Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836240 | XP_003611771.1 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836240 | sp|O23179|PLP1_ARATH | 55.729 | 384 | 162 | 5 | 14 | 393 | 17 | 396 | 1.02e-152 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836240 | G7K804 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715210 | Msa0836240 | 0.846460 | 2.142480e-59 | -8.615850e-47 |
| Msa0757120 | Msa0836240 | 0.830727 | 2.494782e-55 | -8.615850e-47 |
| Msa0798150 | Msa0836240 | 0.870661 | 1.233161e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836240 | MtrunA17_Chr5g0402441 | 97.250 | 400 | 10 | 1 | 1 | 400 | 1 | 399 | 0.0 | 796 |
| Msa0836240 | MtrunA17_Chr5g0402451 | 88.832 | 394 | 40 | 3 | 10 | 400 | 4 | 396 | 0.0 | 701 |
| Msa0836240 | MtrunA17_Chr1g0153781 | 56.878 | 378 | 157 | 4 | 14 | 387 | 19 | 394 | 2.86e-154 | 442 |
| Msa0836240 | MtrunA17_Chr3g0133691 | 53.695 | 406 | 177 | 6 | 3 | 400 | 4 | 406 | 1.04e-141 | 409 |
| Msa0836240 | MtrunA17_Chr3g0133681 | 53.401 | 397 | 176 | 5 | 3 | 393 | 4 | 397 | 2.83e-140 | 405 |
| Msa0836240 | MtrunA17_Chr8g0335651 | 43.896 | 385 | 185 | 9 | 14 | 397 | 31 | 385 | 4.27e-85 | 265 |
| Msa0836240 | MtrunA17_Chr8g0335581 | 39.130 | 391 | 210 | 11 | 14 | 397 | 19 | 388 | 2.58e-80 | 253 |
| Msa0836240 | MtrunA17_Chr8g0335611 | 39.031 | 392 | 205 | 12 | 16 | 397 | 32 | 399 | 5.98e-79 | 249 |
| Msa0836240 | MtrunA17_Chr8g0335621 | 38.776 | 392 | 206 | 12 | 16 | 397 | 63 | 430 | 3.90e-78 | 248 |
| Msa0836240 | MtrunA17_Chr8g0335591 | 38.958 | 403 | 207 | 13 | 4 | 397 | 25 | 397 | 1.44e-74 | 238 |
| Msa0836240 | MtrunA17_Chr8g0335631 | 39.898 | 391 | 203 | 10 | 14 | 397 | 30 | 395 | 1.98e-70 | 227 |
| Msa0836240 | MtrunA17_Chr1g0199801 | 30.618 | 356 | 210 | 14 | 16 | 354 | 75 | 410 | 3.39e-34 | 132 |
| Msa0836240 | MtrunA17_Chr1g0185551 | 27.729 | 339 | 210 | 12 | 18 | 351 | 32 | 340 | 5.42e-27 | 110 |
| Msa0836240 | MtrunA17_Chr2g0292051 | 29.683 | 347 | 188 | 15 | 16 | 354 | 69 | 367 | 4.36e-24 | 103 |
| Msa0836240 | MtrunA17_Chr7g0259871 | 24.928 | 345 | 220 | 10 | 18 | 353 | 32 | 346 | 3.04e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836240 | AT4G37070.2 | 55.729 | 384 | 162 | 5 | 14 | 393 | 17 | 396 | 1.04e-153 | 441 |
| Msa0836240 | AT4G37060.1 | 56.364 | 385 | 160 | 5 | 15 | 395 | 18 | 398 | 2.62e-152 | 437 |
| Msa0836240 | AT4G37070.3 | 56.604 | 371 | 153 | 5 | 14 | 380 | 17 | 383 | 2.23e-150 | 431 |
| Msa0836240 | AT4G37070.1 | 56.604 | 371 | 153 | 5 | 14 | 380 | 17 | 383 | 2.23e-150 | 431 |
| Msa0836240 | AT2G26560.1 | 57.662 | 385 | 149 | 7 | 14 | 393 | 17 | 392 | 2.50e-148 | 426 |
| Msa0836240 | AT4G37060.2 | 52.163 | 416 | 160 | 6 | 15 | 395 | 18 | 429 | 1.05e-145 | 421 |
| Msa0836240 | AT4G37050.1 | 55.526 | 371 | 153 | 5 | 35 | 395 | 54 | 422 | 2.98e-142 | 412 |
| Msa0836240 | AT4G37070.4 | 54.178 | 371 | 151 | 6 | 14 | 380 | 17 | 372 | 3.45e-140 | 404 |
| Msa0836240 | AT5G43590.1 | 52.880 | 382 | 167 | 6 | 14 | 390 | 12 | 385 | 2.87e-117 | 347 |
| Msa0836240 | AT5G43590.2 | 52.880 | 382 | 167 | 6 | 14 | 390 | 79 | 452 | 2.80e-116 | 347 |
| Msa0836240 | AT3G54950.1 | 30.548 | 347 | 209 | 9 | 16 | 354 | 98 | 420 | 6.11e-37 | 140 |
| Msa0836240 | AT2G39220.1 | 31.304 | 345 | 212 | 10 | 16 | 354 | 108 | 433 | 1.72e-36 | 139 |
| Msa0836240 | AT4G29800.1 | 29.189 | 370 | 223 | 12 | 2 | 353 | 108 | 456 | 4.08e-30 | 122 |
| Msa0836240 | AT4G29800.2 | 29.380 | 371 | 222 | 13 | 2 | 353 | 108 | 457 | 5.61e-30 | 121 |
| Msa0836240 | AT3G63200.1 | 26.115 | 314 | 200 | 10 | 18 | 325 | 32 | 319 | 1.59e-26 | 110 |
Find 79 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATGGTGCCCTTATC+TGG | 0.232624 | 5_4:+9727540 | None:intergenic |
| ATGCTAAGATGGTTGCTAAA+TGG | 0.247274 | 5_4:-9728468 | Msa0836240:CDS |
| TAACAACGTTTGTCAAAGTT+TGG | 0.299732 | 5_4:+9729314 | None:intergenic |
| ATCACTGTTCTTAGCATTGA+TGG | 0.321271 | 5_4:-9729964 | Msa0836240:CDS |
| GGGAGAAGTGGGAATGGTAT+AGG | 0.351084 | 5_4:-9728553 | Msa0836240:CDS |
| ATTTCCTTGGCAGCAAATAA+AGG | 0.355627 | 5_4:+9729616 | None:intergenic |
| TAAAACAAATTTGAATAATC+TGG | 0.359589 | 5_4:-9727637 | Msa0836240:CDS |
| AATAAAGGACGGTTATCCTT+TGG | 0.370442 | 5_4:+9729631 | None:intergenic |
| CTACCTTGAATCACAACTTC+AGG | 0.374157 | 5_4:-9729902 | Msa0836240:intron |
| TGCTAAGATGGTTGCTAAAT+GGG | 0.379655 | 5_4:-9728467 | Msa0836240:CDS |
| CAATGAAGCTAGCACTGATA+TGG | 0.386604 | 5_4:-9728392 | Msa0836240:CDS |
| CAATCCTTGCATCCTCATTA+TGG | 0.389232 | 5_4:+9729725 | None:intergenic |
| GGAGAAGTGGGAATGGTATA+GGG | 0.414361 | 5_4:-9728552 | Msa0836240:CDS |
| GAAACAGGACGATACATTAC+AGG | 0.420080 | 5_4:-9727688 | Msa0836240:intron |
| TAACCTGAAGTTGTGATTCA+AGG | 0.425350 | 5_4:+9729899 | None:intergenic |
| TAGGTTTGCTAGGTTACTTT+CGG | 0.427174 | 5_4:-9727410 | Msa0836240:CDS |
| AGGACGGTTATCCTTTGGAT+TGG | 0.427991 | 5_4:+9729636 | None:intergenic |
| CTAAATGGGGTGCTTTGACT+TGG | 0.433220 | 5_4:-9728453 | Msa0836240:CDS |
| TTGACTTGGTTATTCAACTC+TGG | 0.437374 | 5_4:-9728439 | Msa0836240:CDS |
| TATGAAACTGTTCCAGATAA+GGG | 0.437927 | 5_4:-9727552 | Msa0836240:CDS |
| GGCGTCAGAGGAATCATTCC+TGG | 0.439433 | 5_4:-9729937 | Msa0836240:CDS |
| CCCAAGCCTTATCATATCCT+TGG | 0.439573 | 5_4:+9728573 | None:intergenic |
| TCATTGAAACAATCTAGAAT+TGG | 0.440126 | 5_4:+9728409 | None:intergenic |
| GGACGGTTATCCTTTGGATT+GGG | 0.448475 | 5_4:+9729637 | None:intergenic |
| CCGTCCTTTATTTGCTGCCA+AGG | 0.456116 | 5_4:-9729620 | Msa0836240:CDS |
| ACCAAGGATATGATAAGGCT+TGG | 0.457168 | 5_4:-9728574 | Msa0836240:CDS |
| TGATAAGGCTTGGGAGAAGT+GGG | 0.472469 | 5_4:-9728564 | Msa0836240:CDS |
| ATATGAAACTGTTCCAGATA+AGG | 0.477514 | 5_4:-9727553 | Msa0836240:CDS |
| GTAAAATGGGACAATTTCCT+TGG | 0.485032 | 5_4:+9729603 | None:intergenic |
| ATGATAAGGCTTGGGAGAAG+TGG | 0.485821 | 5_4:-9728565 | Msa0836240:CDS |
| TTGAATAATCTGGTAAAAGC+TGG | 0.487021 | 5_4:-9727627 | Msa0836240:CDS |
| TAGTGAGCTGGTAAATAAGT+TGG | 0.487210 | 5_4:+9729084 | None:intergenic |
| ATAGTTATCTCAATAGGGAC+AGG | 0.489956 | 5_4:-9728517 | Msa0836240:CDS |
| GTAATTGCTGGGACAAGTAC+AGG | 0.493434 | 5_4:-9729688 | Msa0836240:CDS |
| ATATATTTGCTAGGTTTGCT+AGG | 0.494976 | 5_4:-9727420 | Msa0836240:intron |
| TACTCGAGTGAATCTAGATA+CGG | 0.496366 | 5_4:-9727580 | Msa0836240:CDS |
| AACATAACAAAAGCATTGAC+AGG | 0.502042 | 5_4:-9729403 | Msa0836240:CDS |
| AACAACAATCAATACCTGAT+AGG | 0.510484 | 5_4:+9729246 | None:intergenic |
| AATTCACAGGCTTAATATCA+AGG | 0.515925 | 5_4:+9729989 | None:intergenic |
| GCAAAAGTACAATGCTAAGA+TGG | 0.517286 | 5_4:-9728479 | Msa0836240:CDS |
| TGGCGTGTGCGCTAACAATC+CGG | 0.520862 | 5_4:-9729004 | Msa0836240:intron |
| CCAAGGATATGATAAGGCTT+GGG | 0.527337 | 5_4:-9728573 | Msa0836240:CDS |
| CTTAATATCAAGGTAAGATG+TGG | 0.538960 | 5_4:+9729999 | None:intergenic |
| AAGTGACCAAGGATATGATA+AGG | 0.539485 | 5_4:-9728579 | Msa0836240:CDS |
| GCTAGTGGTACATCTAAAGT+TGG | 0.541491 | 5_4:+9729135 | None:intergenic |
| CCATTGAGGAAGAACTCAAA+AGG | 0.542620 | 5_4:-9727527 | Msa0836240:intron |
| TTAATATCAAGGTAAGATGT+GGG | 0.542845 | 5_4:+9730000 | None:intergenic |
| GTTCTTAGCATTGATGGTGG+AGG | 0.559782 | 5_4:-9729958 | Msa0836240:CDS |
| AGGCTTGGGAGAAGTGGGAA+TGG | 0.568362 | 5_4:-9728559 | Msa0836240:CDS |
| AGATTCTGAACATCAAAAGA+TGG | 0.568517 | 5_4:+9729289 | None:intergenic |
| TGGATTGGGAGTTGCTAACA+TGG | 0.571178 | 5_4:+9729651 | None:intergenic |
| AGATATTTGCATAGCTACAT+CGG | 0.575630 | 5_4:-9729112 | Msa0836240:CDS |
| ATTGATGGTGGAGGCGTCAG+AGG | 0.577961 | 5_4:-9729949 | Msa0836240:CDS |
| GGTAGTTGTCTTGAGACTGA+AGG | 0.579464 | 5_4:+9728338 | None:intergenic |
| AAAGAATACAATCTCATCGA+TGG | 0.580009 | 5_4:-9729027 | Msa0836240:CDS |
| AACAATCAATACCTGATAGG+AGG | 0.587198 | 5_4:+9729249 | None:intergenic |
| GTAGTTGTCTTGAGACTGAA+GGG | 0.588919 | 5_4:+9728339 | None:intergenic |
| TCCAGATAAGGGCACCATTG+AGG | 0.588948 | 5_4:-9727541 | Msa0836240:CDS |
| CTGAAGTTGTGATTCAAGGT+AGG | 0.589950 | 5_4:+9729903 | None:intergenic |
| AGAACAGTGATGAAATTCAC+AGG | 0.591725 | 5_4:+9729976 | None:intergenic |
| CCTTGGCAGCAAATAAAGGA+CGG | 0.594651 | 5_4:+9729620 | None:intergenic |
| ACTCGAGTGAATCTAGATAC+GGG | 0.601488 | 5_4:-9727579 | Msa0836240:CDS |
| TAGACCATAATGAGGATGCA+AGG | 0.606947 | 5_4:-9729729 | Msa0836240:CDS |
| AATATCAAGGTAAGATGTGG+GGG | 0.610994 | 5_4:+9730002 | None:intergenic |
| AATTACTTACTTGAATTCTG+AGG | 0.620238 | 5_4:+9728317 | None:intergenic |
| ACTGTTCTTAGCATTGATGG+TGG | 0.626560 | 5_4:-9729961 | Msa0836240:CDS |
| TAATATCAAGGTAAGATGTG+GGG | 0.627540 | 5_4:+9730001 | None:intergenic |
| AAACAGGACGATACATTACA+GGG | 0.628797 | 5_4:-9727687 | Msa0836240:intron |
| GAATACAATCTCATCGATGG+TGG | 0.637571 | 5_4:-9729024 | Msa0836240:CDS |
| TGCAATTAGAGAAGTGACCA+AGG | 0.640808 | 5_4:-9728590 | Msa0836240:CDS |
| TTGACAGGAGCTAAGTACAA+TGG | 0.641305 | 5_4:-9729388 | Msa0836240:CDS |
| GCTATGCAAATATCTGCTAG+TGG | 0.642842 | 5_4:+9729120 | None:intergenic |
| ACAGGAGATAGACCATAATG+AGG | 0.647951 | 5_4:-9729737 | Msa0836240:intron |
| GTTAGCAACTCCCAATCCAA+AGG | 0.650775 | 5_4:-9729647 | Msa0836240:CDS |
| AGGTAGGCAAGAATAACACC+AGG | 0.666909 | 5_4:+9729919 | None:intergenic |
| GCTAAGATGGTTGCTAAATG+GGG | 0.667354 | 5_4:-9728466 | Msa0836240:CDS |
| ACAGGACGATACATTACAGG+GGG | 0.705452 | 5_4:-9727685 | Msa0836240:intron |
| ATTGCTGGGACAAGTACAGG+CGG | 0.738099 | 5_4:-9729685 | Msa0836240:CDS |
| AACAGGACGATACATTACAG+GGG | 0.752844 | 5_4:-9727686 | Msa0836240:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTAAAATAAAA+TGG | - | chr5_4:9729304-9729323 | Msa0836240:CDS | 0.0% |
| !! | TATGTTAATTAATAATTTAC+AGG | - | chr5_4:9727620-9727639 | Msa0836240:CDS | 10.0% |
| !!! | TAGAAATTTTAATATATAGA+TGG | + | chr5_4:9727835-9727854 | None:intergenic | 10.0% |
| !! | TAGATTTCAAATATTATAAT+CGG | + | chr5_4:9728717-9728736 | None:intergenic | 10.0% |
| !! | GATTAAAAGAACTAATTAAT+TGG | - | chr5_4:9727906-9727925 | Msa0836240:intron | 15.0% |
| !!! | TTACTTTAAGAACTTATTTT+TGG | - | chr5_4:9728496-9728515 | Msa0836240:CDS | 15.0% |
| !! | AATAAAAAAAATAGCATAAG+AGG | + | chr5_4:9729295-9729314 | None:intergenic | 15.0% |
| !! | AAAATGAACTATTCATAAAA+CGG | - | chr5_4:9729552-9729571 | Msa0836240:intron | 15.0% |
| !! | TAAAACAAATTTGAATAATC+TGG | - | chr5_4:9729738-9729757 | Msa0836240:intron | 15.0% |
| !!! | TATCAATATTTTTAGAGTTA+GGG | + | chr5_4:9729938-9729957 | None:intergenic | 15.0% |
| !!! | ATATCAATATTTTTAGAGTT+AGG | + | chr5_4:9729939-9729958 | None:intergenic | 15.0% |
| !! | AAAATATTGATATATTTGCT+AGG | - | chr5_4:9729946-9729965 | Msa0836240:CDS | 15.0% |
| !!! | ATTATTTTGATGTAATTGCT+GGG | - | chr5_4:9727676-9727695 | Msa0836240:CDS | 20.0% |
| !! | TAAATATATGATCAAGTTCA+AGG | + | chr5_4:9728203-9728222 | None:intergenic | 20.0% |
| !!! | TAAGTTTTTTTCAATCTGAT+TGG | + | chr5_4:9728415-9728434 | None:intergenic | 20.0% |
| !! | ATTGTTTGATACGAAATTAA+TGG | - | chr5_4:9728573-9728592 | Msa0836240:CDS | 20.0% |
| !!! | GTTTTATAGTTATCTCAATA+GGG | - | chr5_4:9728853-9728872 | Msa0836240:intron | 20.0% |
| !! | TTAATTACTGTTTATGTGTT+AGG | - | chr5_4:9729079-9729098 | Msa0836240:CDS | 20.0% |
| !! | TAATTACTGTTTATGTGTTA+GGG | - | chr5_4:9729080-9729099 | Msa0836240:CDS | 20.0% |
| !!! | GTTTTTTCAAATGACATATA+TGG | - | chr5_4:9729326-9729345 | Msa0836240:CDS | 20.0% |
| !! | CAAACAAAAATAAATCTAGA+TGG | + | chr5_4:9729513-9729532 | None:intergenic | 20.0% |
| !! | TAAATTGTTACAAACTTATG+TGG | - | chr5_4:9729658-9729677 | Msa0836240:CDS | 20.0% |
| ! | TTAATATCAAGGTAAGATGT+GGG | + | chr5_4:9727378-9727397 | None:intergenic | 25.0% |
| !!! | GATTATTTTGATGTAATTGC+TGG | - | chr5_4:9727675-9727694 | Msa0836240:CDS | 25.0% |
| !!! | CTTTTTTGTGGAAAAATAGA+TGG | + | chr5_4:9727810-9727829 | None:intergenic | 25.0% |
| !!! | CATCTATTTTTCCACAAAAA+AGG | - | chr5_4:9727808-9727827 | Msa0836240:intron | 25.0% |
| ! | TTATTACTTAACATATGCAG+TGG | - | chr5_4:9727930-9727949 | Msa0836240:intron | 25.0% |
| !!! | GCTTTTGTTATGTTTATCAA+AGG | + | chr5_4:9727966-9727985 | None:intergenic | 25.0% |
| ! | TTCGAGAAAAAAGATGAAAA+TGG | - | chr5_4:9728315-9728334 | Msa0836240:intron | 25.0% |
| ! | TCGAGAAAAAAGATGAAAAT+GGG | - | chr5_4:9728316-9728335 | Msa0836240:intron | 25.0% |
| !! | CGTTTTATAGTTATCTCAAT+AGG | - | chr5_4:9728852-9728871 | Msa0836240:intron | 25.0% |
| !! | TCATTGAAACAATCTAGAAT+TGG | + | chr5_4:9728969-9728988 | None:intergenic | 25.0% |
| ! | AATTACTTACTTGAATTCTG+AGG | + | chr5_4:9729061-9729080 | None:intergenic | 25.0% |
| ! | AAAAAATCATTCATCAAGCT+AGG | + | chr5_4:9729474-9729493 | None:intergenic | 25.0% |
| ! | TTGTATATTAGTCCTAACTA+AGG | - | chr5_4:9729909-9729928 | Msa0836240:CDS | 25.0% |
| ! | TGTATATTAGTCCTAACTAA+GGG | - | chr5_4:9729910-9729929 | Msa0836240:CDS | 25.0% |
| TAATATCAAGGTAAGATGTG+GGG | + | chr5_4:9727377-9727396 | None:intergenic | 30.0% | |
| CTTAATATCAAGGTAAGATG+TGG | + | chr5_4:9727379-9727398 | None:intergenic | 30.0% | |
| AATTCACAGGCTTAATATCA+AGG | + | chr5_4:9727389-9727408 | None:intergenic | 30.0% | |
| !!! | GCAAGTTTTGAAGGTAAAAT+GGG | + | chr5_4:9727788-9727807 | None:intergenic | 30.0% |
| !! | AAATAGATGGCAAGTTTTGA+AGG | + | chr5_4:9727797-9727816 | None:intergenic | 30.0% |
| !!! | ATATAGATGGACCTTTTTTG+TGG | + | chr5_4:9727822-9727841 | None:intergenic | 30.0% |
| !! | AACATAACAAAAGCATTGAC+AGG | - | chr5_4:9727972-9727991 | Msa0836240:intron | 30.0% |
| TAACAACGTTTGTCAAAGTT+TGG | + | chr5_4:9728064-9728083 | None:intergenic | 30.0% | |
| AGATTCTGAACATCAAAAGA+TGG | + | chr5_4:9728089-9728108 | None:intergenic | 30.0% | |
| AACAACAATCAATACCTGAT+AGG | + | chr5_4:9728132-9728151 | None:intergenic | 30.0% | |
| !!! | GTTTTTTACATAGTCATGCA+TGG | - | chr5_4:9728149-9728168 | Msa0836240:intron | 30.0% |
| AGATATTTGCATAGCTACAT+CGG | - | chr5_4:9728263-9728282 | Msa0836240:intron | 30.0% | |
| AAAGAATACAATCTCATCGA+TGG | - | chr5_4:9728348-9728367 | Msa0836240:CDS | 30.0% | |
| ! | ACTATTCGATCTGAAATCAA+TGG | - | chr5_4:9728519-9728538 | Msa0836240:CDS | 30.0% |
| !! | GATGATTATTTTGCAGACAA+TGG | - | chr5_4:9728761-9728780 | Msa0836240:intron | 30.0% |
| ATGTGTTAGGGATTTACAAT+TGG | - | chr5_4:9729092-9729111 | Msa0836240:CDS | 30.0% | |
| AATTGCCTAGACAATCTAAA+GGG | + | chr5_4:9729126-9729145 | None:intergenic | 30.0% | |
| GTAAACTTATTGTATGACGT+TGG | - | chr5_4:9729164-9729183 | Msa0836240:intron | 30.0% | |
| !! | CAATGTTAATCTGTTTCTGT+TGG | - | chr5_4:9729218-9729237 | Msa0836240:intron | 30.0% |
| ATAATGATTGCATAAGTGTG+CGG | - | chr5_4:9729442-9729461 | Msa0836240:intron | 30.0% | |
| TTGAATAATCTGGTAAAAGC+TGG | - | chr5_4:9729748-9729767 | Msa0836240:intron | 30.0% | |
| ATATGAAACTGTTCCAGATA+AGG | - | chr5_4:9729822-9729841 | Msa0836240:intron | 30.0% | |
| TATGAAACTGTTCCAGATAA+GGG | - | chr5_4:9729823-9729842 | Msa0836240:intron | 30.0% | |
| ! | ATATATTTGCTAGGTTTGCT+AGG | - | chr5_4:9729955-9729974 | Msa0836240:CDS | 30.0% |
| AAAAAGTCGAAGCTACAAAA+TGG | - | chr5_4:9730002-9730021 | Msa0836240:CDS | 30.0% | |
| AATATCAAGGTAAGATGTGG+GGG | + | chr5_4:9727376-9727395 | None:intergenic | 35.0% | |
| AGAACAGTGATGAAATTCAC+AGG | + | chr5_4:9727402-9727421 | None:intergenic | 35.0% | |
| ! | ATCACTGTTCTTAGCATTGA+TGG | - | chr5_4:9727411-9727430 | Msa0836240:intron | 35.0% |
| TAACCTGAAGTTGTGATTCA+AGG | + | chr5_4:9727479-9727498 | None:intergenic | 35.0% | |
| AATAAAGGACGGTTATCCTT+TGG | + | chr5_4:9727747-9727766 | None:intergenic | 35.0% | |
| ATTTCCTTGGCAGCAAATAA+AGG | + | chr5_4:9727762-9727781 | None:intergenic | 35.0% | |
| GTAAAATGGGACAATTTCCT+TGG | + | chr5_4:9727775-9727794 | None:intergenic | 35.0% | |
| !!! | GGCAAGTTTTGAAGGTAAAA+TGG | + | chr5_4:9727789-9727808 | None:intergenic | 35.0% |
| TGATAGGAGGAAAAAATGGT+GGG | + | chr5_4:9728116-9728135 | None:intergenic | 35.0% | |
| TACCTGATAGGAGGAAAAAA+TGG | + | chr5_4:9728120-9728139 | None:intergenic | 35.0% | |
| AACAATCAATACCTGATAGG+AGG | + | chr5_4:9728129-9728148 | None:intergenic | 35.0% | |
| TAGTGAGCTGGTAAATAAGT+TGG | + | chr5_4:9728294-9728313 | None:intergenic | 35.0% | |
| ! | TTTTTCTCGAAATAGTGAGC+TGG | + | chr5_4:9728306-9728325 | None:intergenic | 35.0% |
| AAGTGACCAAGGATATGATA+AGG | - | chr5_4:9728796-9728815 | Msa0836240:intron | 35.0% | |
| ATAGTTATCTCAATAGGGAC+AGG | - | chr5_4:9728858-9728877 | Msa0836240:intron | 35.0% | |
| ! | GCAAAAGTACAATGCTAAGA+TGG | - | chr5_4:9728896-9728915 | Msa0836240:intron | 35.0% |
| ATGCTAAGATGGTTGCTAAA+TGG | - | chr5_4:9728907-9728926 | Msa0836240:intron | 35.0% | |
| TGCTAAGATGGTTGCTAAAT+GGG | - | chr5_4:9728908-9728927 | Msa0836240:intron | 35.0% | |
| !! | TTGACTTGGTTATTCAACTC+TGG | - | chr5_4:9728936-9728955 | Msa0836240:intron | 35.0% |
| CAGTAAAAAGAACTGAGTTG+TGG | + | chr5_4:9729016-9729035 | None:intergenic | 35.0% | |
| CAATTGCCTAGACAATCTAA+AGG | + | chr5_4:9729127-9729146 | None:intergenic | 35.0% | |
| ! | GTTTTCAACATACTTGCAAG+TGG | - | chr5_4:9729397-9729416 | Msa0836240:CDS | 35.0% |
| TAATGATTGCATAAGTGTGC+GGG | - | chr5_4:9729443-9729462 | Msa0836240:intron | 35.0% | |
| AAACAGGACGATACATTACA+GGG | - | chr5_4:9729688-9729707 | Msa0836240:CDS | 35.0% | |
| TACTCGAGTGAATCTAGATA+CGG | - | chr5_4:9729795-9729814 | Msa0836240:intron | 35.0% | |
| !! | TAGGTTTGCTAGGTTACTTT+CGG | - | chr5_4:9729965-9729984 | Msa0836240:CDS | 35.0% |
| !! | ACTGTTCTTAGCATTGATGG+TGG | - | chr5_4:9727414-9727433 | Msa0836240:intron | 40.0% |
| CTGAAGTTGTGATTCAAGGT+AGG | + | chr5_4:9727475-9727494 | None:intergenic | 40.0% | |
| CTACCTTGAATCACAACTTC+AGG | - | chr5_4:9727473-9727492 | Msa0836240:intron | 40.0% | |
| ACAGGAGATAGACCATAATG+AGG | - | chr5_4:9727638-9727657 | Msa0836240:CDS | 40.0% | |
| TAGACCATAATGAGGATGCA+AGG | - | chr5_4:9727646-9727665 | Msa0836240:CDS | 40.0% | |
| CAATCCTTGCATCCTCATTA+TGG | + | chr5_4:9727653-9727672 | None:intergenic | 40.0% | |
| TTGACAGGAGCTAAGTACAA+TGG | - | chr5_4:9727987-9728006 | Msa0836240:intron | 40.0% | |
| CTGATAGGAGGAAAAAATGG+TGG | + | chr5_4:9728117-9728136 | None:intergenic | 40.0% | |
| !!! | CACCATTTTTTCCTCCTATC+AGG | - | chr5_4:9728115-9728134 | Msa0836240:intron | 40.0% |
| ! | GCTAGTGGTACATCTAAAGT+TGG | + | chr5_4:9728243-9728262 | None:intergenic | 40.0% |
| GCTATGCAAATATCTGCTAG+TGG | + | chr5_4:9728258-9728277 | None:intergenic | 40.0% | |
| GAATACAATCTCATCGATGG+TGG | - | chr5_4:9728351-9728370 | Msa0836240:CDS | 40.0% | |
| TGCAATTAGAGAAGTGACCA+AGG | - | chr5_4:9728785-9728804 | Msa0836240:intron | 40.0% | |
| ACCAAGGATATGATAAGGCT+TGG | - | chr5_4:9728801-9728820 | Msa0836240:intron | 40.0% | |
| CCAAGGATATGATAAGGCTT+GGG | - | chr5_4:9728802-9728821 | Msa0836240:intron | 40.0% | |
| GCTAAGATGGTTGCTAAATG+GGG | - | chr5_4:9728909-9728928 | Msa0836240:intron | 40.0% | |
| !! | CAATGAAGCTAGCACTGATA+TGG | - | chr5_4:9728983-9729002 | Msa0836240:intron | 40.0% |
| GTAGTTGTCTTGAGACTGAA+GGG | + | chr5_4:9729039-9729058 | None:intergenic | 40.0% | |
| GAATGCCCTTTAGATTGTCT+AGG | - | chr5_4:9729118-9729137 | Msa0836240:CDS | 40.0% | |
| CATACTTGCAAGTGGATAGA+TGG | - | chr5_4:9729405-9729424 | Msa0836240:CDS | 40.0% | |
| CTTATGTGGTTGCTTGAAAC+AGG | - | chr5_4:9729672-9729691 | Msa0836240:CDS | 40.0% | |
| GAAACAGGACGATACATTAC+AGG | - | chr5_4:9729687-9729706 | Msa0836240:CDS | 40.0% | |
| AACAGGACGATACATTACAG+GGG | - | chr5_4:9729689-9729708 | Msa0836240:CDS | 40.0% | |
| ACTCGAGTGAATCTAGATAC+GGG | - | chr5_4:9729796-9729815 | Msa0836240:intron | 40.0% | |
| !!! | CCTTTTGAGTTCTTCCTCAA+TGG | + | chr5_4:9729851-9729870 | None:intergenic | 40.0% |
| CCATTGAGGAAGAACTCAAA+AGG | - | chr5_4:9729848-9729867 | Msa0836240:intron | 40.0% | |
| !! | GTTCTTAGCATTGATGGTGG+AGG | - | chr5_4:9727417-9727436 | Msa0836240:intron | 45.0% |
| AGGTAGGCAAGAATAACACC+AGG | + | chr5_4:9727459-9727478 | None:intergenic | 45.0% | |
| GTAATTGCTGGGACAAGTAC+AGG | - | chr5_4:9727687-9727706 | Msa0836240:intron | 45.0% | |
| ! | TGGATTGGGAGTTGCTAACA+TGG | + | chr5_4:9727727-9727746 | None:intergenic | 45.0% |
| GTTAGCAACTCCCAATCCAA+AGG | - | chr5_4:9727728-9727747 | Msa0836240:intron | 45.0% | |
| GGACGGTTATCCTTTGGATT+GGG | + | chr5_4:9727741-9727760 | None:intergenic | 45.0% | |
| AGGACGGTTATCCTTTGGAT+TGG | + | chr5_4:9727742-9727761 | None:intergenic | 45.0% | |
| CCTTGGCAGCAAATAAAGGA+CGG | + | chr5_4:9727758-9727777 | None:intergenic | 45.0% | |
| ! | TTCAATCTGATTGGCCCTTG+AGG | + | chr5_4:9728406-9728425 | None:intergenic | 45.0% |
| ACGATTGAATAGTCTGCTGG+TGG | + | chr5_4:9728694-9728713 | None:intergenic | 45.0% | |
| ! | CCCAAGCCTTATCATATCCT+TGG | + | chr5_4:9728805-9728824 | None:intergenic | 45.0% |
| ATGATAAGGCTTGGGAGAAG+TGG | - | chr5_4:9728810-9728829 | Msa0836240:intron | 45.0% | |
| TGATAAGGCTTGGGAGAAGT+GGG | - | chr5_4:9728811-9728830 | Msa0836240:intron | 45.0% | |
| GGAGAAGTGGGAATGGTATA+GGG | - | chr5_4:9728823-9728842 | Msa0836240:intron | 45.0% | |
| ! | CTAAATGGGGTGCTTTGACT+TGG | - | chr5_4:9728922-9728941 | Msa0836240:intron | 45.0% |
| GGTAGTTGTCTTGAGACTGA+AGG | + | chr5_4:9729040-9729059 | None:intergenic | 45.0% | |
| ACAGGACGATACATTACAGG+GGG | - | chr5_4:9729690-9729709 | Msa0836240:CDS | 45.0% | |
| !! | TTCAAAAAAAAAAAAAAAAT+CGG | + | chr5_4:9728649-9728668 | None:intergenic | 5.0% |
| !!! | ATTTTTTAATAGATATTATT+TGG | + | chr5_4:9729537-9729556 | None:intergenic | 5.0% |
| ATTGCTGGGACAAGTACAGG+CGG | - | chr5_4:9727690-9727709 | Msa0836240:intron | 50.0% | |
| ! | CCGTCCTTTATTTGCTGCCA+AGG | - | chr5_4:9727755-9727774 | Msa0836240:intron | 50.0% |
| CGGACGATTGAATAGTCTGC+TGG | + | chr5_4:9728697-9728716 | None:intergenic | 50.0% | |
| GGGAGAAGTGGGAATGGTAT+AGG | - | chr5_4:9728822-9728841 | Msa0836240:intron | 50.0% | |
| !! | TCCAGATAAGGGCACCATTG+AGG | - | chr5_4:9729834-9729853 | Msa0836240:intron | 50.0% |
| TCCTCAATGGTGCCCTTATC+TGG | + | chr5_4:9729838-9729857 | None:intergenic | 50.0% | |
| ! | GAGTTAGGGCACCCTTAGTT+AGG | + | chr5_4:9729924-9729943 | None:intergenic | 50.0% |
| !! | ATTGATGGTGGAGGCGTCAG+AGG | - | chr5_4:9727426-9727445 | Msa0836240:intron | 55.0% |
| GGCGTCAGAGGAATCATTCC+TGG | - | chr5_4:9727438-9727457 | Msa0836240:intron | 55.0% | |
| TGGCGTGTGCGCTAACAATC+CGG | - | chr5_4:9728371-9728390 | Msa0836240:CDS | 55.0% | |
| ATCCGGTAAGCGCTACCTCA+AGG | - | chr5_4:9728388-9728407 | Msa0836240:CDS | 55.0% | |
| TCCGGTAAGCGCTACCTCAA+GGG | - | chr5_4:9728389-9728408 | Msa0836240:CDS | 55.0% | |
| AGGCTTGGGAGAAGTGGGAA+TGG | - | chr5_4:9728816-9728835 | Msa0836240:intron | 55.0% | |
| GCCCTTGAGGTAGCGCTTAC+CGG | + | chr5_4:9728393-9728412 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9727366 | 9730031 | 9727366 | ID=Msa0836240;Name=Msa0836240 |
| chr5_4 | mRNA | 9727366 | 9730031 | 9727366 | ID=Msa0836240-mRNA-1;Parent=Msa0836240;Name=Msa0836240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|7|0|400 |
| chr5_4 | exon | 9729903 | 9730031 | 9729903 | ID=Msa0836240-mRNA-1:exon:4354;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9729568 | 9729755 | 9729568 | ID=Msa0836240-mRNA-1:exon:4353;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9729261 | 9729447 | 9729261 | ID=Msa0836240-mRNA-1:exon:4352;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9729005 | 9729169 | 9729005 | ID=Msa0836240-mRNA-1:exon:4351;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9728327 | 9728620 | 9728327 | ID=Msa0836240-mRNA-1:exon:4350;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9727528 | 9727703 | 9727528 | ID=Msa0836240-mRNA-1:exon:4349;Parent=Msa0836240-mRNA-1 |
| chr5_4 | exon | 9727366 | 9727429 | 9727366 | ID=Msa0836240-mRNA-1:exon:4348;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9729903 | 9730031 | 9729903 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9729568 | 9729755 | 9729568 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9729261 | 9729447 | 9729261 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9729005 | 9729169 | 9729005 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9728327 | 9728620 | 9728327 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9727528 | 9727703 | 9727528 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| chr5_4 | CDS | 9727366 | 9727429 | 9727366 | ID=Msa0836240-mRNA-1:cds;Parent=Msa0836240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
