AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837850 MtrunA17_Chr5g0405011 99.142 233 2 0 1 233 1 233 4.95e-171 470
Msa0837850 MtrunA17_Chr8g0372241 74.486 243 50 3 1 233 1 241 1.20e-121 345
Msa0837850 MtrunA17_Chr3g0145131 78.261 184 40 0 50 233 43 226 6.32e-103 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837850 AT2G16460.1 71.366 227 65 0 7 233 4 230 2.20e-110 317
Msa0837850 AT3G51090.1 65.339 251 69 2 1 233 48 298 1.94e-106 309
Msa0837850 AT3G51090.2 60.377 212 66 2 1 194 48 259 4.81e-78 236
Msa0837850 AT2G16460.2 64.881 168 59 0 7 174 4 171 2.88e-68 207
Msa0837850 AT2G35070.2 27.326 172 79 3 58 229 28 153 3.05e-12 63.2
Msa0837850 AT2G35070.1 27.326 172 79 3 58 229 28 153 3.05e-12 63.2

Find 96 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTATTGTATTCCCTTTC+AGG 0.067323 5_4:-11956106 Msa0837850:intron
TCAAATTGTTGGAGGAATTT+TGG 0.076247 5_4:-11955956 Msa0837850:five_prime_UTR
TTCAGGAAATCCACGCTTTA+AGG 0.099975 5_4:-11951878 Msa0837850:intron
ATTGCCTCAGCTTGCTTTAA+AGG 0.139852 5_4:+11955170 None:intergenic
GTACTTTATCACATCATATT+TGG 0.179302 5_4:+11951839 None:intergenic
GGAGATTAATTGAGATAAAA+TGG 0.193236 5_4:+11956130 None:intergenic
CGAAATTGAAGGTGAAAATT+TGG 0.217342 5_4:+11955807 None:intergenic
TGGCCGCTGTGGCGGCTTGC+CGG 0.234576 5_4:-11955900 Msa0837850:CDS
TTTGAGATATGTAATGAATA+TGG 0.237720 5_4:+11951589 None:intergenic
AAAGGGATTACGCGGTTTAT+TGG 0.280001 5_4:+11956183 None:intergenic
ATTGAGATAAAATGGGGATT+AGG 0.284181 5_4:+11956138 None:intergenic
TTGAGATAAAATGGGGATTA+GGG 0.293640 5_4:+11956139 None:intergenic
CTCTATCAAGTTTGTTAGTC+AGG 0.294634 5_4:+11952008 None:intergenic
AATTCCGGGGTTGGTTTAAC+TGG 0.298466 5_4:-11955856 Msa0837850:CDS
GTGGCGGCTTGCCGGCGATT+GGG 0.303722 5_4:-11955892 Msa0837850:CDS
TTTGGGGTTGCAATAAAGTT+TGG 0.315206 5_4:-11955938 Msa0837850:five_prime_UTR
GATTAACACTGACAAAATTA+AGG 0.320328 5_4:-11951738 Msa0837850:three_prime_UTR
GGGAGATTGAGGACCAATTC+CGG 0.327565 5_4:-11955871 Msa0837850:CDS
GGAGATTGAGGACCAATTCC+GGG 0.359811 5_4:-11955870 Msa0837850:CDS
AGTTAAACCAACCCCGGAAT+TGG 0.368913 5_4:+11955858 None:intergenic
GACCATCGATTTCAAATTGT+TGG 0.377927 5_4:-11955967 Msa0837850:five_prime_UTR
TTGAGATATGTAATGAATAT+GGG 0.381512 5_4:+11951590 None:intergenic
GGTTTCCATTAGACTTCAAA+TGG 0.386815 5_4:-11951630 Msa0837850:three_prime_UTR
ACTGTAAGTGCAGGAGGATA+AGG 0.391252 5_4:-11952066 Msa0837850:intron
GAGATTAATTGAGATAAAAT+GGG 0.393023 5_4:+11956131 None:intergenic
AAGGCCCATTTGAAGTCTAA+TGG 0.399026 5_4:+11951625 None:intergenic
TGTGGCGGCTTGCCGGCGAT+TGG 0.400407 5_4:-11955893 Msa0837850:CDS
TTGTTGTTGTGTAGGTTAAG+AGG 0.404187 5_4:-11955211 Msa0837850:intron
AAGCAAGCTGAGGCAATAAC+TGG 0.420014 5_4:-11955164 Msa0837850:CDS
TCAAAGAAGATTACCTGAAA+GGG 0.429725 5_4:+11956093 None:intergenic
CCACGCTTTAAGGGCTCAGC+TGG 0.431576 5_4:-11951868 Msa0837850:CDS
TCAGGAAATCCACGCTTTAA+GGG 0.443180 5_4:-11951877 Msa0837850:intron
AGGAAACTAGAGAAGCTGTT+TGG 0.457219 5_4:-11951712 Msa0837850:three_prime_UTR
GTTAGTTTCAGCATTCTGAT+TGG 0.457445 5_4:+11952033 None:intergenic
TACCTGAAAGGGAATACAAT+AGG 0.457810 5_4:+11956104 None:intergenic
ATGGGGATTAGGGAAGTAAA+TGG 0.460452 5_4:+11956149 None:intergenic
CTGTAAGTGCAGGAGGATAA+GGG 0.466625 5_4:-11952065 Msa0837850:intron
TAAATGGTGGGAATTAGAAA+AGG 0.469675 5_4:+11956165 None:intergenic
TGGCGGCTTGCCGGCGATTG+GGG 0.472945 5_4:-11955891 Msa0837850:CDS
CATCGATTTCAAATTGTTGG+AGG 0.488755 5_4:-11955964 Msa0837850:five_prime_UTR
ATCAAAGAAGATTACCTGAA+AGG 0.490859 5_4:+11956092 None:intergenic
TACATAGAACCCGAAATTGA+AGG 0.491329 5_4:+11955796 None:intergenic
AAACAATTGCATGGCAGTGC+TGG 0.492277 5_4:-11951665 Msa0837850:three_prime_UTR
GTGTAGGTTAAGAGGCTTGA+GGG 0.492293 5_4:-11955203 Msa0837850:intron
TTGAGGACCAATTCCGGGGT+TGG 0.493555 5_4:-11955865 Msa0837850:CDS
GCCGGCGATTGGGGAGATTG+AGG 0.494997 5_4:-11955882 Msa0837850:CDS
GTTGGATTTAAACCTTGAAA+GGG 0.496533 5_4:-11952185 Msa0837850:CDS
CTCCAACAATTTGAAATCGA+TGG 0.499531 5_4:+11955965 None:intergenic
GGTTGGATTTAAACCTTGAA+AGG 0.499726 5_4:-11952186 Msa0837850:CDS
TAAGCTTCTCAGTTTCGTGT+TGG 0.504715 5_4:+11952375 None:intergenic
GAATCAAATGGCCGCTGTGG+CGG 0.509153 5_4:-11955908 Msa0837850:exon
CTTGTTTCAATATCTGCTGT+TGG 0.511375 5_4:-11951804 Msa0837850:CDS
GGAGAATGTATCTCGGTCAT+TGG 0.516080 5_4:-11955111 Msa0837850:CDS
AAATGGTGGGAATTAGAAAA+GGG 0.520968 5_4:+11956166 None:intergenic
GAGATAGATAAAGTCACGGC+TGG 0.523910 5_4:-11952214 Msa0837850:CDS
AAAGCGTGTCATAATCGTAA+TGG 0.525478 5_4:-11956273 None:intergenic
TCCTCAATCTCCCCAATCGC+CGG 0.535142 5_4:+11955881 None:intergenic
CTGAAAGGGAATACAATAGG+AGG 0.538638 5_4:+11956107 None:intergenic
TCGCCGGCAAGCCGCCACAG+CGG 0.543052 5_4:+11955897 None:intergenic
CAGTGCTGGTGGAGCTGAAG+TGG 0.543924 5_4:-11951651 Msa0837850:three_prime_UTR
TGAGGTGTTGAATGATAGCT+TGG 0.550034 5_4:-11955132 Msa0837850:CDS
CGTGTTGGAGCAGAGAAAAG+TGG 0.557662 5_4:+11952390 None:intergenic
CAATTGCATGGCAGTGCTGG+TGG 0.559379 5_4:-11951662 Msa0837850:three_prime_UTR
AGTCACGGCTGGACAGCGGT+TGG 0.560017 5_4:-11952203 Msa0837850:CDS
GTTTCCATTAGACTTCAAAT+GGG 0.563495 5_4:-11951629 Msa0837850:three_prime_UTR
AGAAGATGCGTAGTGAATTG+AGG 0.566616 5_4:-11952340 Msa0837850:intron
TGAAAGGGAATACAATAGGA+GGG 0.569950 5_4:+11956108 None:intergenic
AGCAAGGCAAGTAAATGAGT+TGG 0.574372 5_4:+11951531 None:intergenic
TTACATCAATATACGAAGAA+CGG 0.580904 5_4:+11951776 None:intergenic
CACTGACAAAATTAAGGTGA+AGG 0.581609 5_4:-11951732 Msa0837850:three_prime_UTR
GTTAAGAGGCTTGAGGGACA+AGG 0.590914 5_4:-11955197 Msa0837850:CDS
TTGGAATCAAATGGCCGCTG+TGG 0.593151 5_4:-11955911 Msa0837850:exon
CCAGCTGAGCCCTTAAAGCG+TGG 0.594471 5_4:+11951868 None:intergenic
TTGGATTTAAACCTTGAAAG+GGG 0.608817 5_4:-11952184 Msa0837850:CDS
GATGTGATAAAGTACTGCAT+AGG 0.611784 5_4:-11951831 Msa0837850:CDS
AGATTAATTGAGATAAAATG+GGG 0.617198 5_4:+11956132 None:intergenic
AACAGAAGTGCAGAGCTCAC+AGG 0.617774 5_4:-11954848 Msa0837850:intron
GGGATTAGGGAAGTAAATGG+TGG 0.617915 5_4:+11956152 None:intergenic
TGGATTTAAACCTTGAAAGG+GGG 0.618514 5_4:-11952183 Msa0837850:intron
GGATTAGGGAAGTAAATGGT+GGG 0.622002 5_4:+11956153 None:intergenic
GAGATTGAGGACCAATTCCG+GGG 0.623639 5_4:-11955869 Msa0837850:CDS
TTGGTAAATCAAATGGACAA+CGG 0.627930 5_4:-11955762 Msa0837850:CDS
ATAGCTTGGAGAATGTATCT+CGG 0.632775 5_4:-11955118 Msa0837850:CDS
GAAAGGGAATACAATAGGAG+GGG 0.636306 5_4:+11956109 None:intergenic
AATAACTGGTGCTATAACTG+AGG 0.638529 5_4:-11955150 Msa0837850:CDS
CTGTAAGAGAAACAATTGCA+TGG 0.642151 5_4:-11951674 Msa0837850:three_prime_UTR
ATCAAAAGAAGAAATGCAGA+GGG 0.642450 5_4:-11955087 Msa0837850:intron
TATCAAAAGAAGAAATGCAG+AGG 0.651897 5_4:-11955088 Msa0837850:CDS
AGTACTCACAAGCAACAGCA+AGG 0.652229 5_4:+11951515 None:intergenic
AAAACCAGTTAAACCAACCC+CGG 0.659053 5_4:+11955852 None:intergenic
TGTGTAGGTTAAGAGGCTTG+AGG 0.667242 5_4:-11955204 Msa0837850:intron
GAATTAGAAAAGGGATTACG+CGG 0.670151 5_4:+11956175 None:intergenic
ATAAAGTCACGGCTGGACAG+CGG 0.681023 5_4:-11952207 Msa0837850:CDS
AGTGCCTTTAAAGCAAGCTG+AGG 0.684635 5_4:-11955174 Msa0837850:CDS
GTATGAGATAGATAAAGTCA+CGG 0.685262 5_4:-11952218 Msa0837850:CDS
TCAATATACGAAGAACGGCG+AGG 0.726236 5_4:+11951781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATCTATATTGAT+AGG + chr5_4:11951701-11951720 None:intergenic 10.0%
!!! TTTTTTTTTTTTAATTACAC+AGG - chr5_4:11956207-11956226 Msa0837850:five_prime_UTR 10.0%
!!! CATTTTTGATTCAAAAAAAT+AGG - chr5_4:11951542-11951561 Msa0837850:three_prime_UTR 15.0%
!!! TTTTAAAATTAAAACCAAAC+CGG + chr5_4:11952265-11952284 None:intergenic 15.0%
!!! AATTAAAATCTGCATTTTTT+TGG - chr5_4:11952400-11952419 Msa0837850:intron 15.0%
!! ATTGTAAATAAGTTTCAAAA+GGG + chr5_4:11952712-11952731 None:intergenic 15.0%
!! AATTGTAAATAAGTTTCAAA+AGG + chr5_4:11952713-11952732 None:intergenic 15.0%
!!! ATGTAATAATGTTTTTTTGA+AGG - chr5_4:11952807-11952826 Msa0837850:intron 15.0%
!!! ATATGGTAATGAAATTTTAA+AGG - chr5_4:11953001-11953020 Msa0837850:intron 15.0%
!! AGTATTATAACAATATAAAC+TGG + chr5_4:11954872-11954891 None:intergenic 15.0%
!! TATATTCTCTTAAATAAGTT+TGG - chr5_4:11955154-11955173 Msa0837850:CDS 15.0%
!! TAATGAAAATATTATAATGC+AGG - chr5_4:11955347-11955366 Msa0837850:intron 15.0%
!! AATGAAAATATTATAATGCA+GGG - chr5_4:11955348-11955367 Msa0837850:intron 15.0%
!! TTAATATTAATACAATGTTC+AGG - chr5_4:11955869-11955888 Msa0837850:CDS 15.0%
!! AGATTAATTGAGATAAAATG+GGG + chr5_4:11951635-11951654 None:intergenic 20.0%
!! GAGATTAATTGAGATAAAAT+GGG + chr5_4:11951636-11951655 None:intergenic 20.0%
!!! AAATTTTAAAGGTTGAATGA+AGG - chr5_4:11953012-11953031 Msa0837850:intron 20.0%
!!! AATTTTAAAGGTTGAATGAA+GGG - chr5_4:11953013-11953032 Msa0837850:intron 20.0%
!!! TTTGGTTATATTTTTCTGAT+TGG + chr5_4:11953261-11953280 None:intergenic 20.0%
!!! ATGCTATTTTTAAAATCTTC+TGG + chr5_4:11953680-11953699 None:intergenic 20.0%
!!! GATTTTCAAAAACACATAAA+CGG - chr5_4:11953730-11953749 Msa0837850:intron 20.0%
!! AACATTCTAATTCTATTGTT+TGG - chr5_4:11954241-11954260 Msa0837850:intron 20.0%
!! AAGTGTCAATATTAAAAGTA+GGG + chr5_4:11954341-11954360 None:intergenic 20.0%
!!! AAAGTGTCAATATTAAAAGT+AGG + chr5_4:11954342-11954361 None:intergenic 20.0%
!! TGTTAATATTTGTCCTTTAT+CGG - chr5_4:11954610-11954629 Msa0837850:intron 20.0%
!! AAAAAAAAAGGAAGAAAGAA+TGG - chr5_4:11954730-11954749 Msa0837850:intron 20.0%
!! TTTGTATCATGAATAAAACT+AGG + chr5_4:11954776-11954795 None:intergenic 20.0%
!! ATAACAATATAAACTGGATT+TGG + chr5_4:11954866-11954885 None:intergenic 20.0%
!!! TTTTCAGGTAATAAACTTTA+TGG - chr5_4:11955498-11955517 Msa0837850:intron 20.0%
!! TCAAACATTAACAATCATAA+TGG + chr5_4:11955679-11955698 None:intergenic 20.0%
!! TAAAGAAAATCAAAATGACT+AGG + chr5_4:11955852-11955871 None:intergenic 20.0%
!! TTGAGATATGTAATGAATAT+GGG + chr5_4:11956177-11956196 None:intergenic 20.0%
!!! TTTGAGATATGTAATGAATA+TGG + chr5_4:11956178-11956197 None:intergenic 20.0%
! GGAGATTAATTGAGATAAAA+TGG + chr5_4:11951637-11951656 None:intergenic 25.0%
!!! TGCAATAAAGTTTGGTTTTT+TGG - chr5_4:11951834-11951853 Msa0837850:CDS 25.0%
!!! TTTGGTTTTTTGGAATCAAA+TGG - chr5_4:11951844-11951863 Msa0837850:CDS 25.0%
!! CAAATTTTCACCTTCAATTT+CGG - chr5_4:11951958-11951977 Msa0837850:intron 25.0%
!! AAATTTTCACCTTCAATTTC+GGG - chr5_4:11951959-11951978 Msa0837850:intron 25.0%
!!! TCTATGTATTTTTCTGGTTT+TGG - chr5_4:11951983-11952002 Msa0837850:intron 25.0%
! AGAGAAAATGTGAATTACAA+GGG + chr5_4:11952050-11952069 None:intergenic 25.0%
! AAGAGAAAATGTGAATTACA+AGG + chr5_4:11952051-11952070 None:intergenic 25.0%
! TTTCTTCATAACTAATCCAA+GGG + chr5_4:11952514-11952533 None:intergenic 25.0%
! TGAAACTTATTTACAATTCC+AGG - chr5_4:11952715-11952734 Msa0837850:intron 25.0%
!! TTACATAACTTTTTGCATCA+CGG + chr5_4:11952793-11952812 None:intergenic 25.0%
! TGCAAAAATAGTGTTATATG+TGG - chr5_4:11952950-11952969 Msa0837850:intron 25.0%
! TAATTGCAGGAAAAAAATCA+AGG + chr5_4:11953400-11953419 None:intergenic 25.0%
! GGCATATATTTATCCAAATA+TGG - chr5_4:11953481-11953500 Msa0837850:intron 25.0%
!!! ATTTCTTGCTGTTTGAATTT+AGG + chr5_4:11953633-11953652 None:intergenic 25.0%
!! GTAACAGAAATTTAGAACTA+TGG + chr5_4:11954025-11954044 None:intergenic 25.0%
!!! ACAAAGTTAAAATTTTCGAG+CGG - chr5_4:11954291-11954310 Msa0837850:intron 25.0%
! CAATATTAAAAGTAGGGAAA+AGG + chr5_4:11954335-11954354 None:intergenic 25.0%
! CAGTTGTACAATAAAAGAAA+GGG + chr5_4:11954391-11954410 None:intergenic 25.0%
! GTATGATAAGAAATGGAAAA+AGG - chr5_4:11954569-11954588 Msa0837850:intron 25.0%
!! ATATGAAATTCTAAAGACCA+GGG + chr5_4:11954645-11954664 None:intergenic 25.0%
! AAATTAGTAAAGCTCTGTTT+GGG - chr5_4:11954675-11954694 Msa0837850:intron 25.0%
! ATACAAAATCCTCCTAATTT+GGG - chr5_4:11954789-11954808 Msa0837850:intron 25.0%
! TAAAAAATTGTATTGGACGA+GGG - chr5_4:11954817-11954836 Msa0837850:intron 25.0%
! TTTGTTCTTGAAATTATCTG+TGG - chr5_4:11955098-11955117 Msa0837850:CDS 25.0%
! TTCTCTTAAATAAGTTTGGT+TGG - chr5_4:11955158-11955177 Msa0837850:CDS 25.0%
!! TAAATAAGTTTGGTTGGTAT+TGG - chr5_4:11955164-11955183 Msa0837850:CDS 25.0%
!! TTTTCATTATATGACCACAT+CGG + chr5_4:11955336-11955355 None:intergenic 25.0%
!!! ATGAAACTAGTAGTTGATAA+AGG + chr5_4:11955478-11955497 None:intergenic 25.0%
!!! AACTACTAGTTTCATTTTTC+AGG - chr5_4:11955483-11955502 Msa0837850:intron 25.0%
! GTACTTTATCACATCATATT+TGG + chr5_4:11955928-11955947 None:intergenic 25.0%
! TTACATCAATATACGAAGAA+CGG + chr5_4:11955991-11956010 None:intergenic 25.0%
! GATTAACACTGACAAAATTA+AGG - chr5_4:11956026-11956045 Msa0837850:intron 25.0%
! ATATGGGCTTGAAAAAAAAA+AGG + chr5_4:11956161-11956180 None:intergenic 25.0%
! AAATGGTGGGAATTAGAAAA+GGG + chr5_4:11951601-11951620 None:intergenic 30.0%
! TAAATGGTGGGAATTAGAAA+AGG + chr5_4:11951602-11951621 None:intergenic 30.0%
TTGAGATAAAATGGGGATTA+GGG + chr5_4:11951628-11951647 None:intergenic 30.0%
ATTGAGATAAAATGGGGATT+AGG + chr5_4:11951629-11951648 None:intergenic 30.0%
TCAAAGAAGATTACCTGAAA+GGG + chr5_4:11951674-11951693 None:intergenic 30.0%
ATCAAAGAAGATTACCTGAA+AGG + chr5_4:11951675-11951694 None:intergenic 30.0%
! CGATGGTCACATAAATTTTA+TGG + chr5_4:11951785-11951804 None:intergenic 30.0%
! TCAAATTGTTGGAGGAATTT+TGG - chr5_4:11951808-11951827 Msa0837850:CDS 30.0%
! CAAATTGTTGGAGGAATTTT+GGG - chr5_4:11951809-11951828 Msa0837850:CDS 30.0%
! AAATTGTTGGAGGAATTTTG+GGG - chr5_4:11951810-11951829 Msa0837850:CDS 30.0%
CGAAATTGAAGGTGAAAATT+TGG + chr5_4:11951960-11951979 None:intergenic 30.0%
!!! TCTGGTTTTGGTAAATCAAA+TGG - chr5_4:11951995-11952014 Msa0837850:intron 30.0%
TTGGTAAATCAAATGGACAA+CGG - chr5_4:11952002-11952021 Msa0837850:intron 30.0%
CGGTTGAATTGTTAAAACAT+TGG + chr5_4:11952121-11952140 None:intergenic 30.0%
TTACTTTAGCAGTTTGACTA+CGG + chr5_4:11952196-11952215 None:intergenic 30.0%
TAATCTTAAACAAACAGCCA+CGG + chr5_4:11952344-11952363 None:intergenic 30.0%
AGATGATCCATATTCAAACT+CGG - chr5_4:11952363-11952382 Msa0837850:CDS 30.0%
ATCCAAATTCTTTATTCCCT+TGG - chr5_4:11952495-11952514 Msa0837850:intron 30.0%
ATCCAAGGGAATAAAGAATT+TGG + chr5_4:11952500-11952519 None:intergenic 30.0%
CTTTCTTCATAACTAATCCA+AGG + chr5_4:11952515-11952534 None:intergenic 30.0%
!! CTTGGATTAGTTATGAAGAA+AGG - chr5_4:11952513-11952532 Msa0837850:intron 30.0%
TTAACCTACACAACAACAAA+GGG + chr5_4:11952552-11952571 None:intergenic 30.0%
TATCAAAAGAAGAAATGCAG+AGG - chr5_4:11952676-11952695 Msa0837850:intron 30.0%
ATCAAAAGAAGAAATGCAGA+GGG - chr5_4:11952677-11952696 Msa0837850:intron 30.0%
TAAATAAGTTTCAAAAGGGC+AGG + chr5_4:11952708-11952727 None:intergenic 30.0%
TATTTACAATTCCAGGAATG+TGG - chr5_4:11952722-11952741 Msa0837850:intron 30.0%
ATTTACAATTCCAGGAATGT+GGG - chr5_4:11952723-11952742 Msa0837850:intron 30.0%
!! TGTACTAATGTTAGCTCTTT+TGG - chr5_4:11952836-11952855 Msa0837850:intron 30.0%
TTCTATTTCCTTGTGTTCTT+AGG + chr5_4:11953221-11953240 None:intergenic 30.0%
!! GCAAGATATTTTTGCCATTT+TGG + chr5_4:11953308-11953327 None:intergenic 30.0%
!! TTGCTGAGGAAAATTTTAGT+AGG + chr5_4:11953330-11953349 None:intergenic 30.0%
! GGAGATCTTTTTATTGCATT+TGG + chr5_4:11953379-11953398 None:intergenic 30.0%
!! TCTGATTTGGAATTGTACTT+GGG + chr5_4:11953431-11953450 None:intergenic 30.0%
ATAGAATGAAAATCCAAGCT+AGG - chr5_4:11953460-11953479 Msa0837850:intron 30.0%
TATCCAAATATGGTGAGATA+CGG - chr5_4:11953491-11953510 Msa0837850:intron 30.0%
AAAAGGACTTTGGATTTCAA+AGG + chr5_4:11953785-11953804 None:intergenic 30.0%
! CAGAAATTTAGAACTATGGT+TGG + chr5_4:11954021-11954040 None:intergenic 30.0%
CTAAATTTCTGTTACAGCTA+AGG - chr5_4:11954030-11954049 Msa0837850:intron 30.0%
TTACATGTACATCTACTTGT+TGG - chr5_4:11954120-11954139 Msa0837850:intron 30.0%
AATGACAAAGAATGTCTACT+TGG + chr5_4:11954204-11954223 None:intergenic 30.0%
TGTACAATAAAAGAAAGGGA+AGG + chr5_4:11954387-11954406 None:intergenic 30.0%
GCAGTTGTACAATAAAAGAA+AGG + chr5_4:11954392-11954411 None:intergenic 30.0%
TAAGTGACACCAATATCAAA+AGG + chr5_4:11954473-11954492 None:intergenic 30.0%
CCATTTCTTATCATACAATC+TGG + chr5_4:11954565-11954584 None:intergenic 30.0%
CCAGATTGTATGATAAGAAA+TGG - chr5_4:11954562-11954581 Msa0837850:intron 30.0%
ATATTTGTCCTTTATCGGAA+TGG - chr5_4:11954615-11954634 Msa0837850:intron 30.0%
! CATATGAAATTCTAAAGACC+AGG + chr5_4:11954646-11954665 None:intergenic 30.0%
GAAATTAGTAAAGCTCTGTT+TGG - chr5_4:11954674-11954693 Msa0837850:intron 30.0%
GGAGAGCTTGAAAAAAAAAA+AGG - chr5_4:11954718-11954737 Msa0837850:intron 30.0%
GATACAAAATCCTCCTAATT+TGG - chr5_4:11954788-11954807 Msa0837850:intron 30.0%
TACAAAATCCTCCTAATTTG+GGG - chr5_4:11954790-11954809 Msa0837850:intron 30.0%
!!! TTTTTTAGTTCCCCCAAATT+AGG + chr5_4:11954804-11954823 None:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG - chr5_4:11954810-11954829 Msa0837850:intron 30.0%
CTAAAAAATTGTATTGGACG+AGG - chr5_4:11954816-11954835 Msa0837850:intron 30.0%
!!! ACACTCGCAATTTTTTTTGA+AGG - chr5_4:11954948-11954967 Msa0837850:intron 30.0%
! ATATACGTATTTTCCATCAC+AGG + chr5_4:11955137-11955156 None:intergenic 30.0%
! AAGATTTAGGACATTATGCA+GGG - chr5_4:11955191-11955210 Msa0837850:CDS 30.0%
TTATAAGGACAAGGAAAACA+AGG + chr5_4:11955269-11955288 None:intergenic 30.0%
TTGTCCTTATAATGTTTCCT+CGG - chr5_4:11955277-11955296 Msa0837850:intron 30.0%
TTTCATTATATGACCACATC+GGG + chr5_4:11955335-11955354 None:intergenic 30.0%
GTATGAGATAGATAAAGTCA+CGG - chr5_4:11955546-11955565 Msa0837850:intron 30.0%
GTTGGATTTAAACCTTGAAA+GGG - chr5_4:11955579-11955598 Msa0837850:intron 30.0%
TTGGATTTAAACCTTGAAAG+GGG - chr5_4:11955580-11955599 Msa0837850:intron 30.0%
GTTTCCATTAGACTTCAAAT+GGG - chr5_4:11956135-11956154 Msa0837850:five_prime_UTR 30.0%
GAATTAGAAAAGGGATTACG+CGG + chr5_4:11951592-11951611 None:intergenic 35.0%
TGAAAGGGAATACAATAGGA+GGG + chr5_4:11951659-11951678 None:intergenic 35.0%
TACCTGAAAGGGAATACAAT+AGG + chr5_4:11951663-11951682 None:intergenic 35.0%
!! GACCATCGATTTCAAATTGT+TGG - chr5_4:11951797-11951816 Msa0837850:CDS 35.0%
! CTCCAACAATTTGAAATCGA+TGG + chr5_4:11951802-11951821 None:intergenic 35.0%
!! CATCGATTTCAAATTGTTGG+AGG - chr5_4:11951800-11951819 Msa0837850:CDS 35.0%
! TTTGGGGTTGCAATAAAGTT+TGG - chr5_4:11951826-11951845 Msa0837850:CDS 35.0%
TACATAGAACCCGAAATTGA+AGG + chr5_4:11951971-11951990 None:intergenic 35.0%
! TCGGGTTCTATGTATTTTTC+TGG - chr5_4:11951977-11951996 Msa0837850:intron 35.0%
TGAAATTGAATATGACCCAG+AGG + chr5_4:11952162-11952181 None:intergenic 35.0%
CTGCTAAAGTAAATGAACTG+TGG - chr5_4:11952204-11952223 Msa0837850:CDS 35.0%
! AAACACTGCCATTTCATTTG+TGG - chr5_4:11952283-11952302 Msa0837850:intron 35.0%
CAAAATGCCGAGTTTGAATA+TGG + chr5_4:11952373-11952392 None:intergenic 35.0%
CTTAACCTACACAACAACAA+AGG + chr5_4:11952553-11952572 None:intergenic 35.0%
! TTGTTGTTGTGTAGGTTAAG+AGG - chr5_4:11952553-11952572 Msa0837850:intron 35.0%
!! AATAACTGGTGCTATAACTG+AGG - chr5_4:11952614-11952633 Msa0837850:intron 35.0%
ATAGCTTGGAGAATGTATCT+CGG - chr5_4:11952646-11952665 Msa0837850:intron 35.0%
!! TGTTTTGAATTTGGACAGGT+TGG + chr5_4:11952900-11952919 None:intergenic 35.0%
!! CTTCTGTTTTGAATTTGGAC+AGG + chr5_4:11952904-11952923 None:intergenic 35.0%
!! CTGCACTTCTGTTTTGAATT+TGG + chr5_4:11952909-11952928 None:intergenic 35.0%
! TATGTGGACTTTGATGACTT+AGG - chr5_4:11952966-11952985 Msa0837850:intron 35.0%
TTAGGTGCATGTGTATGATA+TGG - chr5_4:11952984-11953003 Msa0837850:intron 35.0%
TGCTTTAGTGTTGTAGACAT+AGG - chr5_4:11953075-11953094 Msa0837850:intron 35.0%
GGACTTGTATTGTAAAAGGT+TGG + chr5_4:11953194-11953213 None:intergenic 35.0%
TGCTGGACTTGTATTGTAAA+AGG + chr5_4:11953198-11953217 None:intergenic 35.0%
CACAAGGAAATAGAAGAGAT+TGG - chr5_4:11953226-11953245 Msa0837850:intron 35.0%
! TCAAAGTCGAAATGTGGTTT+TGG + chr5_4:11953279-11953298 None:intergenic 35.0%
ACTTGATCAAAGTCGAAATG+TGG + chr5_4:11953285-11953304 None:intergenic 35.0%
GACTTTGATCAAGTCCAAAA+TGG - chr5_4:11953291-11953310 Msa0837850:intron 35.0%
!! CTCTGATTTGGAATTGTACT+TGG + chr5_4:11953432-11953451 None:intergenic 35.0%
CAAGTACAATTCCAAATCAG+AGG - chr5_4:11953430-11953449 Msa0837850:intron 35.0%
TACAATTCCAAATCAGAGGA+AGG - chr5_4:11953434-11953453 Msa0837850:intron 35.0%
GGATAAATATATGCCTAGCT+TGG + chr5_4:11953476-11953495 None:intergenic 35.0%
! TTATTCCTCTGAAGGTGAAA+AGG + chr5_4:11953802-11953821 None:intergenic 35.0%
!! TATTGTGTTGGTCTTGAAGA+TGG + chr5_4:11953890-11953909 None:intergenic 35.0%
GTTCCAACTATCTGAAGATA+AGG + chr5_4:11953952-11953971 None:intergenic 35.0%
AGAACTATGGTTGGATACTA+TGG + chr5_4:11954012-11954031 None:intergenic 35.0%
AGCTAAGGAAAACCAAAGAA+AGG - chr5_4:11954045-11954064 Msa0837850:intron 35.0%
GCTAAGGAAAACCAAAGAAA+GGG - chr5_4:11954046-11954065 Msa0837850:intron 35.0%
CTAAGGAAAACCAAAGAAAG+GGG - chr5_4:11954047-11954066 Msa0837850:intron 35.0%
!!! TTTTTTGTGTCCCCTTTCTT+TGG + chr5_4:11954060-11954079 None:intergenic 35.0%
TAGATCTTTCTACCAACTTG+AGG - chr5_4:11954092-11954111 Msa0837850:intron 35.0%
TTGTTGGTATGCTACACATT+AGG - chr5_4:11954136-11954155 Msa0837850:intron 35.0%
TGCGTAGTAAAAACATGAGA+AGG + chr5_4:11954177-11954196 None:intergenic 35.0%
!! ATATCAAAAGGCATCAATCG+AGG + chr5_4:11954461-11954480 None:intergenic 35.0%
! CGATTGATGCCTTTTGATAT+TGG - chr5_4:11954461-11954480 Msa0837850:intron 35.0%
!! TGGTGTCACTTATGCATATA+AGG - chr5_4:11954481-11954500 Msa0837850:intron 35.0%
AAGAAAGAATGGAGAGCTTT+GGG - chr5_4:11954741-11954760 Msa0837850:intron 35.0%
ACAAAATCCTCCTAATTTGG+GGG - chr5_4:11954791-11954810 Msa0837850:intron 35.0%
GACTTGTGATCTTCAAACTA+AGG - chr5_4:11955071-11955090 Msa0837850:intron 35.0%
TTATTGAAGCAATCCTGTGA+TGG - chr5_4:11955121-11955140 Msa0837850:CDS 35.0%
!! TGGTATTGGTTGCAAGATTT+AGG - chr5_4:11955178-11955197 Msa0837850:CDS 35.0%
! CAAGATTTAGGACATTATGC+AGG - chr5_4:11955190-11955209 Msa0837850:CDS 35.0%
AAGTAACTTCAGCAGAAAGA+TGG + chr5_4:11955219-11955238 None:intergenic 35.0%
GAGGAAACATTATAAGGACA+AGG + chr5_4:11955278-11955297 None:intergenic 35.0%
AAGGAAAGTCGATGAAATCA+AGG + chr5_4:11955459-11955478 None:intergenic 35.0%
AACTTTATGGTGCATTGTTC+TGG - chr5_4:11955511-11955530 Msa0837850:intron 35.0%
ACTTTATGGTGCATTGTTCT+GGG - chr5_4:11955512-11955531 Msa0837850:intron 35.0%
GGTTGGATTTAAACCTTGAA+AGG - chr5_4:11955578-11955597 Msa0837850:intron 35.0%
TGGATTTAAACCTTGAAAGG+GGG - chr5_4:11955581-11955600 Msa0837850:intron 35.0%
TTCAGTAATGCTCAGACAAT+TGG + chr5_4:11955627-11955646 None:intergenic 35.0%
TAATGTTTGACTGTAAGTGC+AGG - chr5_4:11955689-11955708 Msa0837850:intron 35.0%
! GTTAGTTTCAGCATTCTGAT+TGG + chr5_4:11955734-11955753 None:intergenic 35.0%
!! CTCTATCAAGTTTGTTAGTC+AGG + chr5_4:11955759-11955778 None:intergenic 35.0%
!! GATGTGATAAAGTACTGCAT+AGG - chr5_4:11955933-11955952 Msa0837850:five_prime_UTR 35.0%
CTTGTTTCAATATCTGCTGT+TGG - chr5_4:11955960-11955979 Msa0837850:five_prime_UTR 35.0%
CACTGACAAAATTAAGGTGA+AGG - chr5_4:11956032-11956051 Msa0837850:intron 35.0%
CTGTAAGAGAAACAATTGCA+TGG - chr5_4:11956090-11956109 Msa0837850:intron 35.0%
GGTTTCCATTAGACTTCAAA+TGG - chr5_4:11956134-11956153 Msa0837850:five_prime_UTR 35.0%
AAAGGGATTACGCGGTTTAT+TGG + chr5_4:11951584-11951603 None:intergenic 40.0%
GGATTAGGGAAGTAAATGGT+GGG + chr5_4:11951614-11951633 None:intergenic 40.0%
ATGGGGATTAGGGAAGTAAA+TGG + chr5_4:11951618-11951637 None:intergenic 40.0%
GAAAGGGAATACAATAGGAG+GGG + chr5_4:11951658-11951677 None:intergenic 40.0%
CTGAAAGGGAATACAATAGG+AGG + chr5_4:11951660-11951679 None:intergenic 40.0%
CTCCTATTGTATTCCCTTTC+AGG - chr5_4:11951658-11951677 Msa0837850:three_prime_UTR 40.0%
AAAACCAGTTAAACCAACCC+CGG + chr5_4:11951915-11951934 None:intergenic 40.0%
!!! GTTGGTTTAACTGGTTTTGC+TGG - chr5_4:11951917-11951936 Msa0837850:intron 40.0%
!!! TTAACTGGTTTTGCTGGCTA+TGG - chr5_4:11951923-11951942 Msa0837850:intron 40.0%
AGTTTGACTACGGTTTAAGG+CGG + chr5_4:11952186-11952205 None:intergenic 40.0%
AGCAGTTTGACTACGGTTTA+AGG + chr5_4:11952189-11952208 None:intergenic 40.0%
CTGTGGTAAAGACATGTTCA+AGG - chr5_4:11952221-11952240 Msa0837850:CDS 40.0%
GTTTAACCGATTGAACTGTC+CGG - chr5_4:11952243-11952262 Msa0837850:intron 40.0%
TCATCCGATCTTTGACCAAA+AGG - chr5_4:11952424-11952443 Msa0837850:intron 40.0%
! ATTGCCTCAGCTTGCTTTAA+AGG + chr5_4:11952597-11952616 None:intergenic 40.0%
!! TGAGGTGTTGAATGATAGCT+TGG - chr5_4:11952632-11952651 Msa0837850:intron 40.0%
CAATGAAAATCCCACATTCC+TGG + chr5_4:11952736-11952755 None:intergenic 40.0%
TGCGAATAAATGTGAGTGCA+AGG - chr5_4:11953156-11953175 Msa0837850:intron 40.0%
AATGTGAGTGCAAGGAGTAA+TGG - chr5_4:11953164-11953183 Msa0837850:intron 40.0%
CTATATGCCTTCCTCTGATT+TGG + chr5_4:11953444-11953463 None:intergenic 40.0%
GTTCCGTATCTCACCATATT+TGG + chr5_4:11953497-11953516 None:intergenic 40.0%
!! AGGTGTTGTTAATTCTGCAG+GGG + chr5_4:11953577-11953596 None:intergenic 40.0%
!! GAGGTGTTGTTAATTCTGCA+GGG + chr5_4:11953578-11953597 None:intergenic 40.0%
!! AGAGGTGTTGTTAATTCTGC+AGG + chr5_4:11953579-11953598 None:intergenic 40.0%
!! CTTGCTGTTTGAATTTAGGC+AGG + chr5_4:11953629-11953648 None:intergenic 40.0%
AGCATCAGCAGAAATCAAAG+AGG - chr5_4:11953695-11953714 Msa0837850:intron 40.0%
GCATCAGCAGAAATCAAAGA+GGG - chr5_4:11953696-11953715 Msa0837850:intron 40.0%
AGGACTTTGGATTTCAAAGG+AGG + chr5_4:11953782-11953801 None:intergenic 40.0%
TCTGAAGGTGAAAAGGACTT+TGG + chr5_4:11953795-11953814 None:intergenic 40.0%
! AAAGTCCTTTTCACCTTCAG+AGG - chr5_4:11953794-11953813 Msa0837850:intron 40.0%
GAGAATATCCTCTCTAGCAT+GGG + chr5_4:11953868-11953887 None:intergenic 40.0%
GGAAGGATGATGTATTGTGT+TGG + chr5_4:11953902-11953921 None:intergenic 40.0%
TCATTATTGACATGGGAGAG+TGG + chr5_4:11953923-11953942 None:intergenic 40.0%
CTCTCCCATGTCAATAATGA+AGG - chr5_4:11953923-11953942 Msa0837850:intron 40.0%
GAGGCCTTCATTATTGACAT+GGG + chr5_4:11953930-11953949 None:intergenic 40.0%
CCAACTATCTGAAGATAAGG+AGG + chr5_4:11953949-11953968 None:intergenic 40.0%
CCTCCTTATCTTCAGATAGT+TGG - chr5_4:11953946-11953965 Msa0837850:intron 40.0%
! ACTTCCAATCTTTGTTTCCG+AGG + chr5_4:11953977-11953996 None:intergenic 40.0%
CTATGGTTGGATACTATGGT+TGG + chr5_4:11954008-11954027 None:intergenic 40.0%
CATGTAACAAAGCCTCAAGT+TGG + chr5_4:11954107-11954126 None:intergenic 40.0%
GTTTGTCATGATGTTGTCAC+TGG - chr5_4:11954421-11954440 Msa0837850:intron 40.0%
GTCACTTATGCATATAAGGC+TGG - chr5_4:11954485-11954504 Msa0837850:intron 40.0%
GGTGCAAAGAGTGATAATTC+TGG - chr5_4:11954506-11954525 Msa0837850:intron 40.0%
GCAAAGAGTGATAATTCTGG+AGG - chr5_4:11954509-11954528 Msa0837850:intron 40.0%
TAAAGCTCTGTTTGGGAGTT+TGG - chr5_4:11954682-11954701 Msa0837850:intron 40.0%
GAAGAAAGAATGGAGAGCTT+TGG - chr5_4:11954740-11954759 Msa0837850:intron 40.0%
! TTTAGTTCCCCCAAATTAGG+AGG + chr5_4:11954801-11954820 None:intergenic 40.0%
! ATTGTATTGGACGAGGGTTT+TGG - chr5_4:11954823-11954842 Msa0837850:intron 40.0%
! TTGTATTGGACGAGGGTTTT+GGG - chr5_4:11954824-11954843 Msa0837850:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr5_4:11955031-11955050 None:intergenic 40.0%
TGCACCGAGGAAACATTATA+AGG + chr5_4:11955284-11955303 None:intergenic 40.0%
!!! TGACTTTTTTTTGCCCGATG+TGG - chr5_4:11955319-11955338 Msa0837850:intron 40.0%
TAAGCTTCTCAGTTTCGTGT+TGG + chr5_4:11955392-11955411 None:intergenic 40.0%
AGAAGATGCGTAGTGAATTG+AGG - chr5_4:11955424-11955443 Msa0837850:intron 40.0%
GTAATTCTTACCCCCTTTCA+AGG + chr5_4:11955594-11955613 None:intergenic 40.0%
TTCAGGAAATCCACGCTTTA+AGG - chr5_4:11955886-11955905 Msa0837850:CDS 40.0%
TCAGGAAATCCACGCTTTAA+GGG - chr5_4:11955887-11955906 Msa0837850:CDS 40.0%
AGGAAACTAGAGAAGCTGTT+TGG - chr5_4:11956052-11956071 Msa0837850:intron 40.0%
! AAGGCCCATTTGAAGTCTAA+TGG + chr5_4:11956142-11956161 None:intergenic 40.0%
AGCAAGGCAAGTAAATGAGT+TGG + chr5_4:11956236-11956255 None:intergenic 40.0%
GGGATTAGGGAAGTAAATGG+TGG + chr5_4:11951615-11951634 None:intergenic 45.0%
AGTTAAACCAACCCCGGAAT+TGG + chr5_4:11951909-11951928 None:intergenic 45.0%
!! AATTCCGGGGTTGGTTTAAC+TGG - chr5_4:11951908-11951927 Msa0837850:intron 45.0%
!! GGTTTTGCTGGCTATGGAAT+TGG - chr5_4:11951929-11951948 Msa0837850:intron 45.0%
GGTTTCGATGGTTCGTTGTT+CGG + chr5_4:11952141-11952160 None:intergenic 45.0%
AACGAACCATCGAAACCTCT+GGG - chr5_4:11952144-11952163 Msa0837850:intron 45.0%
ATATGACCCAGAGGTTTCGA+TGG + chr5_4:11952153-11952172 None:intergenic 45.0%
ACCAAACCGGACAGTTCAAT+CGG + chr5_4:11952252-11952271 None:intergenic 45.0%
! TGCCATTTCATTTGTGGACC+CGG - chr5_4:11952289-11952308 Msa0837850:intron 45.0%
! GTGGCCTTTTGGTCAAAGAT+CGG + chr5_4:11952431-11952450 None:intergenic 45.0%
!! TGCACCCTTTGTTGTTGTGT+AGG - chr5_4:11952545-11952564 Msa0837850:intron 45.0%
TGTGTAGGTTAAGAGGCTTG+AGG - chr5_4:11952560-11952579 Msa0837850:intron 45.0%
GTGTAGGTTAAGAGGCTTGA+GGG - chr5_4:11952561-11952580 Msa0837850:intron 45.0%
!! AGTGCCTTTAAAGCAAGCTG+AGG - chr5_4:11952590-11952609 Msa0837850:intron 45.0%
AAGCAAGCTGAGGCAATAAC+TGG - chr5_4:11952600-11952619 Msa0837850:intron 45.0%
GGAGAATGTATCTCGGTCAT+TGG - chr5_4:11952653-11952672 Msa0837850:intron 45.0%
TTCCTTGTGTTCTTAGGTGC+TGG + chr5_4:11953215-11953234 None:intergenic 45.0%
TGGTCTCTATTTGGTTGCTG+AGG + chr5_4:11953344-11953363 None:intergenic 45.0%
TTATTGCATTTGGCACGCTG+CGG + chr5_4:11953369-11953388 None:intergenic 45.0%
TTTAGGCAGGTTGTCCACAA+GGG + chr5_4:11953616-11953635 None:intergenic 45.0%
ATTTAGGCAGGTTGTCCACA+AGG + chr5_4:11953617-11953636 None:intergenic 45.0%
GCGGTCATTTATTCCTCTGA+AGG + chr5_4:11953810-11953829 None:intergenic 45.0%
AGGAATAAATGACCGCAACC+AGG - chr5_4:11953814-11953833 Msa0837850:intron 45.0%
GGAATAAATGACCGCAACCA+GGG - chr5_4:11953815-11953834 Msa0837850:intron 45.0%
! GAAGACTTGGTCAGTGAACT+AGG + chr5_4:11953843-11953862 None:intergenic 45.0%
TCTAGCATGGGAAGAAGACT+TGG + chr5_4:11953856-11953875 None:intergenic 45.0%
GGAGAATATCCTCTCTAGCA+TGG + chr5_4:11953869-11953888 None:intergenic 45.0%
TATTGACATGGGAGAGTGGA+AGG + chr5_4:11953919-11953938 None:intergenic 45.0%
GGAGGCCTTCATTATTGACA+TGG + chr5_4:11953931-11953950 None:intergenic 45.0%
TCAGATAGTTGGAACGACCT+CGG - chr5_4:11953957-11953976 Msa0837850:intron 45.0%
ACGACCTCGGAAACAAAGAT+TGG - chr5_4:11953970-11953989 Msa0837850:intron 45.0%
AGGGAGAACCATTCCGATAA+AGG + chr5_4:11954626-11954645 None:intergenic 45.0%
TTTATCGGAATGGTTCTCCC+TGG - chr5_4:11954625-11954644 Msa0837850:intron 45.0%
TTTGGGAGTTTGGAGAGGAT+GGG - chr5_4:11954692-11954711 Msa0837850:intron 45.0%
!! AAAGAATGGAGAGCTTTGGG+AGG - chr5_4:11954744-11954763 Msa0837850:intron 45.0%
! TGTATTGGACGAGGGTTTTG+GGG - chr5_4:11954825-11954844 Msa0837850:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr5_4:11955026-11955045 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr5_4:11955027-11955046 None:intergenic 45.0%
!! GAGTGGGTTAGGCTTTGTTT+GGG + chr5_4:11955038-11955057 None:intergenic 45.0%
TCACAAGTCAGCTAGCCAAA+GGG + chr5_4:11955060-11955079 None:intergenic 45.0%
ATCACAAGTCAGCTAGCCAA+AGG + chr5_4:11955061-11955080 None:intergenic 45.0%
CTCAATTCGATAATGCACCG+AGG + chr5_4:11955297-11955316 None:intergenic 45.0%
ATGCGTAGTGAATTGAGGTC+TGG - chr5_4:11955429-11955448 Msa0837850:intron 45.0%
! ATTGTTCTGGGTTGTGGTGT+AGG - chr5_4:11955524-11955543 Msa0837850:intron 45.0%
GAGATAGATAAAGTCACGGC+TGG - chr5_4:11955550-11955569 Msa0837850:intron 45.0%
TGTTTGACTGTAAGTGCAGG+AGG - chr5_4:11955692-11955711 Msa0837850:intron 45.0%
ACTGTAAGTGCAGGAGGATA+AGG - chr5_4:11955698-11955717 Msa0837850:intron 45.0%
CTGTAAGTGCAGGAGGATAA+GGG - chr5_4:11955699-11955718 Msa0837850:intron 45.0%
TCAATATACGAAGAACGGCG+AGG + chr5_4:11955986-11956005 None:intergenic 45.0%
AAACAATTGCATGGCAGTGC+TGG - chr5_4:11956099-11956118 Msa0837850:intron 45.0%
AGTACTCACAAGCAACAGCA+AGG + chr5_4:11956252-11956271 None:intergenic 45.0%
TTGGAATCAAATGGCCGCTG+TGG - chr5_4:11951853-11951872 Msa0837850:CDS 50.0%
GGGAGATTGAGGACCAATTC+CGG - chr5_4:11951893-11951912 Msa0837850:intron 50.0%
GGAGATTGAGGACCAATTCC+GGG - chr5_4:11951894-11951913 Msa0837850:intron 50.0%
GAGATTGAGGACCAATTCCG+GGG - chr5_4:11951895-11951914 Msa0837850:intron 50.0%
CAACGAACCATCGAAACCTC+TGG - chr5_4:11952143-11952162 Msa0837850:intron 50.0%
ACCGATTGAACTGTCCGGTT+TGG - chr5_4:11952248-11952267 Msa0837850:intron 50.0%
GCCATTTCATTTGTGGACCC+GGG - chr5_4:11952290-11952309 Msa0837850:intron 50.0%
TGTGGGATCTTCTGACTGCA+AGG - chr5_4:11952471-11952490 Msa0837850:intron 50.0%
GTTAAGAGGCTTGAGGGACA+AGG - chr5_4:11952567-11952586 Msa0837850:intron 50.0%
! AACAGAAGTGCAGAGCTCAC+AGG - chr5_4:11952916-11952935 Msa0837850:intron 50.0%
GTCCAGCACCTAAGAACACA+AGG - chr5_4:11953210-11953229 Msa0837850:intron 50.0%
GCTGCGGAATGGTCTCTATT+TGG + chr5_4:11953353-11953372 None:intergenic 50.0%
TTGGGCAGCTAGCTAATTGC+AGG + chr5_4:11953413-11953432 None:intergenic 50.0%
GTCTTCTTCCCATGCTAGAG+AGG - chr5_4:11953857-11953876 Msa0837850:intron 50.0%
CTCTGTTTGGGAGTTTGGAG+AGG - chr5_4:11954687-11954706 Msa0837850:intron 50.0%
GTTTGGGAGTTTGGAGAGGA+TGG - chr5_4:11954691-11954710 Msa0837850:intron 50.0%
GAGTTTGGAGAGGATGGGAA+GGG - chr5_4:11954697-11954716 Msa0837850:intron 50.0%
!! GTATTGGACGAGGGTTTTGG+GGG - chr5_4:11954826-11954845 Msa0837850:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + chr5_4:11955021-11955040 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr5_4:11955028-11955047 None:intergenic 50.0%
!! GGAGTGGGTTAGGCTTTGTT+TGG + chr5_4:11955039-11955058 None:intergenic 50.0%
AAAGCCTAACCCACTCCCTT+TGG - chr5_4:11955042-11955061 Msa0837850:intron 50.0%
CGTGTTGGAGCAGAGAAAAG+TGG + chr5_4:11955377-11955396 None:intergenic 50.0%
! TGGTGCATTGTTCTGGGTTG+TGG - chr5_4:11955518-11955537 Msa0837850:intron 50.0%
ATAAAGTCACGGCTGGACAG+CGG - chr5_4:11955557-11955576 Msa0837850:intron 50.0%
GAATCAAATGGCCGCTGTGG+CGG - chr5_4:11951856-11951875 Msa0837850:CDS 55.0%
TCCTCAATCTCCCCAATCGC+CGG + chr5_4:11951886-11951905 None:intergenic 55.0%
TTGAGGACCAATTCCGGGGT+TGG - chr5_4:11951899-11951918 Msa0837850:intron 55.0%
GCCCGGGTCCACAAATGAAA+TGG + chr5_4:11952294-11952313 None:intergenic 55.0%
CCAAAAGGCCACTAACGTCC+CGG - chr5_4:11952439-11952458 Msa0837850:intron 55.0%
! AGGGCTGCTCTCTCTAAGAG+AGG + chr5_4:11953597-11953616 None:intergenic 55.0%
CTTAGAGAGAGCAGCCCTTG+TGG - chr5_4:11953599-11953618 Msa0837850:intron 55.0%
TGAACTAGGCACCCTGGTTG+CGG + chr5_4:11953829-11953848 None:intergenic 55.0%
GGAGTTTGGAGAGGATGGGA+AGG - chr5_4:11954696-11954715 Msa0837850:intron 55.0%
!!! GACGAGGGTTTTGGGGGTTT+GGG - chr5_4:11954832-11954851 Msa0837850:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + chr5_4:11955022-11955041 None:intergenic 55.0%
! CTAGCCAAAGGGAGTGGGTT+AGG + chr5_4:11955049-11955068 None:intergenic 55.0%
GTCAGCTAGCCAAAGGGAGT+GGG + chr5_4:11955054-11955073 None:intergenic 55.0%
AGTCAGCTAGCCAAAGGGAG+TGG + chr5_4:11955055-11955074 None:intergenic 55.0%
! CAATTGCATGGCAGTGCTGG+TGG - chr5_4:11956102-11956121 Msa0837850:intron 55.0%
TCCTGACTGCGTGGATGCAG+GGG + chr5_4:11952318-11952337 None:intergenic 60.0%
GTCCTGACTGCGTGGATGCA+GGG + chr5_4:11952319-11952338 None:intergenic 60.0%
TGTCCTGACTGCGTGGATGC+AGG + chr5_4:11952320-11952339 None:intergenic 60.0%
! CCGGGACGTTAGTGGCCTTT+TGG + chr5_4:11952442-11952461 None:intergenic 60.0%
AGATCCCACATCCACGCAGC+CGG + chr5_4:11952461-11952480 None:intergenic 60.0%
GCATTTGGCACGCTGCGGAA+TGG + chr5_4:11953364-11953383 None:intergenic 60.0%
GGTCAGTGAACTAGGCACCC+TGG + chr5_4:11953835-11953854 None:intergenic 60.0%
!!! GGACGAGGGTTTTGGGGGTT+TGG - chr5_4:11954831-11954850 Msa0837850:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr5_4:11955016-11955035 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + chr5_4:11955017-11955036 None:intergenic 60.0%
CCAGCTGAGCCCTTAAAGCG+TGG + chr5_4:11955899-11955918 None:intergenic 60.0%
!! CCACGCTTTAAGGGCTCAGC+TGG - chr5_4:11955896-11955915 Msa0837850:CDS 60.0%
!! CAGTGCTGGTGGAGCTGAAG+TGG - chr5_4:11956113-11956132 Msa0837850:five_prime_UTR 60.0%
GCCGGCGATTGGGGAGATTG+AGG - chr5_4:11951882-11951901 Msa0837850:intron 65.0%
TCCCCTGCATCCACGCAGTC+AGG - chr5_4:11952314-11952333 Msa0837850:intron 65.0%
CCACGGATGTCCTGACTGCG+TGG + chr5_4:11952327-11952346 None:intergenic 65.0%
CCACGCAGTCAGGACATCCG+TGG - chr5_4:11952324-11952343 Msa0837850:intron 65.0%
GATCCCACATCCACGCAGCC+GGG + chr5_4:11952460-11952479 None:intergenic 65.0%
!! AGGGAGGGGAGGGCTTTGGA+GGG + chr5_4:11955002-11955021 None:intergenic 65.0%
! AAGGGAGGGGAGGGCTTTGG+AGG + chr5_4:11955003-11955022 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + chr5_4:11955012-11955031 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + chr5_4:11955013-11955032 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + chr5_4:11955018-11955037 None:intergenic 65.0%
AGTCACGGCTGGACAGCGGT+TGG - chr5_4:11955561-11955580 Msa0837850:intron 65.0%
TGTGGCGGCTTGCCGGCGAT+TGG - chr5_4:11951871-11951890 Msa0837850:CDS 70.0%
GTGGCGGCTTGCCGGCGATT+GGG - chr5_4:11951872-11951891 Msa0837850:CDS 70.0%
TGGCGGCTTGCCGGCGATTG+GGG - chr5_4:11951873-11951892 Msa0837850:CDS 70.0%
TGCGTGGATGCAGGGGAGCC+CGG + chr5_4:11952311-11952330 None:intergenic 70.0%
CCACGCAGCCGGGACGTTAG+TGG + chr5_4:11952450-11952469 None:intergenic 70.0%
CCACTAACGTCCCGGCTGCG+TGG - chr5_4:11952447-11952466 Msa0837850:intron 70.0%
ACGTCCCGGCTGCGTGGATG+TGG - chr5_4:11952453-11952472 Msa0837850:intron 70.0%
CGTCCCGGCTGCGTGGATGT+GGG - chr5_4:11952454-11952473 Msa0837850:intron 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + chr5_4:11955006-11955025 None:intergenic 70.0%
TGGCCGCTGTGGCGGCTTGC+CGG - chr5_4:11951864-11951883 Msa0837850:CDS 75.0%
TCGCCGGCAAGCCGCCACAG+CGG + chr5_4:11951870-11951889 None:intergenic 75.0%
GCGTGGATGCAGGGGAGCCC+GGG + chr5_4:11952310-11952329 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11951499 11956287 11951499 ID=Msa0837850;Name=Msa0837850
chr5_4 mRNA 11951499 11956287 11951499 ID=Msa0837850-mRNA-1;Parent=Msa0837850;Name=Msa0837850-mRNA-1;_AED=0.19;_eAED=0.19;_QI=282|1|1|1|0.85|0.75|8|277|233
chr5_4 exon 11951499 11951895 11951499 ID=Msa0837850-mRNA-1:exon:5290;Parent=Msa0837850-mRNA-1
chr5_4 exon 11952009 11952075 11952009 ID=Msa0837850-mRNA-1:exon:5289;Parent=Msa0837850-mRNA-1
chr5_4 exon 11952184 11952240 11952184 ID=Msa0837850-mRNA-1:exon:5288;Parent=Msa0837850-mRNA-1
chr5_4 exon 11952341 11952417 11952341 ID=Msa0837850-mRNA-1:exon:5287;Parent=Msa0837850-mRNA-1
chr5_4 exon 11954849 11954908 11954849 ID=Msa0837850-mRNA-1:exon:5286;Parent=Msa0837850-mRNA-1
chr5_4 exon 11955088 11955219 11955088 ID=Msa0837850-mRNA-1:exon:5285;Parent=Msa0837850-mRNA-1
chr5_4 exon 11955735 11956024 11955735 ID=Msa0837850-mRNA-1:exon:5284;Parent=Msa0837850-mRNA-1
chr5_4 exon 11956107 11956287 11956107 ID=Msa0837850-mRNA-1:exon:5283;Parent=Msa0837850-mRNA-1
chr5_4 five_prime_UTR 11956107 11956287 11956107 ID=Msa0837850-mRNA-1:five_prime_utr;Parent=Msa0837850-mRNA-1
chr5_4 five_prime_UTR 11955924 11956024 11955924 ID=Msa0837850-mRNA-1:five_prime_utr;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11955735 11955923 11955735 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11955088 11955219 11955088 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11954849 11954908 11954849 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11952341 11952417 11952341 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11952184 11952240 11952184 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11952009 11952075 11952009 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 CDS 11951776 11951895 11951776 ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1
chr5_4 three_prime_UTR 11951499 11951775 11951499 ID=Msa0837850-mRNA-1:three_prime_utr;Parent=Msa0837850-mRNA-1
Gene Sequence

>Msa0837850

ATGGCCGCTGTGGCGGCTTGCCGGCGATTGGGGAGATTGAGGACCAATTCCGGGGTTGGTTTAACTGGTTTTGCTGGCTATGGAATTGGAGCTTCCAAATTTTCACCTTCAATTTCGGGTTCTATGTATTTTTCTGGTTTTGGTAAATCAAATGGACAACGGTTGTTTCTTGTTGATACATTAGCCCTTGTTAAGAGGCTTGAGGGACAAGGAGTGCCTTTAAAGCAAGCTGAGGCAATAACTGGTGCTATAACTGAGGTGTTGAATGATAGCTTGGAGAATGTATCTCGGTCATTGGTATCAAAAGAAGAAATGCAGAGGACTGAGATGCAACAAGAAGCCAACCTGTCCAAATTCAAAACAGAAGTGCAGAGCTCACAGGGACACCACTTTTCTCTGCTCCAACACGAAACTGAGAAGCTTAAAAATGATATAGAGAAGATGCGTAGTGAATTGAGGTATGAGATAGATAAAGTCACGGCTGGACAGCGGTTGGATTTAAACCTTGAAAGGGGGAGGATAAGGGAAGAGCTAACCAATCAGAATGCTGAAACTAACAACCTGACTAACAAACTTGATAGAGAAATCCACGCTTTAAGGGCTCAGCTGGAAGCAGCCAAATATGATGTGATAAAGTACTGCATAGGAACACTTGTTTCAATATCTGCTGTTGGCCTCGCCGTTCTTCGTATATTGATGTAA

Protein sequence

>Msa0837850

MAAVAACRRLGRLRTNSGVGLTGFAGYGIGASKFSPSISGSMYFSGFGKSNGQRLFLVDTLALVKRLEGQGVPLKQAEAITGAITEVLNDSLENVSRSLVSKEEMQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIREELTNQNAETNNLTNKLDREIHALRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM*