Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837850 | XP_003612111.1 | 99.142 | 233 | 2 | 0 | 1 | 233 | 1 | 233 | 5.39e-167 | 470 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837850 | sp|P43557|FMP32_YEAST | 33.121 | 157 | 105 | 0 | 76 | 232 | 50 | 206 | 1.12e-25 | 102 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837850 | G7KGC7 | 99.142 | 233 | 2 | 0 | 1 | 233 | 1 | 233 | 2.57e-167 | 470 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0758230 | Msa0837850 | 0.843278 | 1.545851e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837850 | MtrunA17_Chr5g0405011 | 99.142 | 233 | 2 | 0 | 1 | 233 | 1 | 233 | 4.95e-171 | 470 |
Msa0837850 | MtrunA17_Chr8g0372241 | 74.486 | 243 | 50 | 3 | 1 | 233 | 1 | 241 | 1.20e-121 | 345 |
Msa0837850 | MtrunA17_Chr3g0145131 | 78.261 | 184 | 40 | 0 | 50 | 233 | 43 | 226 | 6.32e-103 | 297 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837850 | AT2G16460.1 | 71.366 | 227 | 65 | 0 | 7 | 233 | 4 | 230 | 2.20e-110 | 317 |
Msa0837850 | AT3G51090.1 | 65.339 | 251 | 69 | 2 | 1 | 233 | 48 | 298 | 1.94e-106 | 309 |
Msa0837850 | AT3G51090.2 | 60.377 | 212 | 66 | 2 | 1 | 194 | 48 | 259 | 4.81e-78 | 236 |
Msa0837850 | AT2G16460.2 | 64.881 | 168 | 59 | 0 | 7 | 174 | 4 | 171 | 2.88e-68 | 207 |
Msa0837850 | AT2G35070.2 | 27.326 | 172 | 79 | 3 | 58 | 229 | 28 | 153 | 3.05e-12 | 63.2 |
Msa0837850 | AT2G35070.1 | 27.326 | 172 | 79 | 3 | 58 | 229 | 28 | 153 | 3.05e-12 | 63.2 |
Find 96 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTATTGTATTCCCTTTC+AGG | 0.067323 | 5_4:-11956106 | Msa0837850:intron |
TCAAATTGTTGGAGGAATTT+TGG | 0.076247 | 5_4:-11955956 | Msa0837850:five_prime_UTR |
TTCAGGAAATCCACGCTTTA+AGG | 0.099975 | 5_4:-11951878 | Msa0837850:intron |
ATTGCCTCAGCTTGCTTTAA+AGG | 0.139852 | 5_4:+11955170 | None:intergenic |
GTACTTTATCACATCATATT+TGG | 0.179302 | 5_4:+11951839 | None:intergenic |
GGAGATTAATTGAGATAAAA+TGG | 0.193236 | 5_4:+11956130 | None:intergenic |
CGAAATTGAAGGTGAAAATT+TGG | 0.217342 | 5_4:+11955807 | None:intergenic |
TGGCCGCTGTGGCGGCTTGC+CGG | 0.234576 | 5_4:-11955900 | Msa0837850:CDS |
TTTGAGATATGTAATGAATA+TGG | 0.237720 | 5_4:+11951589 | None:intergenic |
AAAGGGATTACGCGGTTTAT+TGG | 0.280001 | 5_4:+11956183 | None:intergenic |
ATTGAGATAAAATGGGGATT+AGG | 0.284181 | 5_4:+11956138 | None:intergenic |
TTGAGATAAAATGGGGATTA+GGG | 0.293640 | 5_4:+11956139 | None:intergenic |
CTCTATCAAGTTTGTTAGTC+AGG | 0.294634 | 5_4:+11952008 | None:intergenic |
AATTCCGGGGTTGGTTTAAC+TGG | 0.298466 | 5_4:-11955856 | Msa0837850:CDS |
GTGGCGGCTTGCCGGCGATT+GGG | 0.303722 | 5_4:-11955892 | Msa0837850:CDS |
TTTGGGGTTGCAATAAAGTT+TGG | 0.315206 | 5_4:-11955938 | Msa0837850:five_prime_UTR |
GATTAACACTGACAAAATTA+AGG | 0.320328 | 5_4:-11951738 | Msa0837850:three_prime_UTR |
GGGAGATTGAGGACCAATTC+CGG | 0.327565 | 5_4:-11955871 | Msa0837850:CDS |
GGAGATTGAGGACCAATTCC+GGG | 0.359811 | 5_4:-11955870 | Msa0837850:CDS |
AGTTAAACCAACCCCGGAAT+TGG | 0.368913 | 5_4:+11955858 | None:intergenic |
GACCATCGATTTCAAATTGT+TGG | 0.377927 | 5_4:-11955967 | Msa0837850:five_prime_UTR |
TTGAGATATGTAATGAATAT+GGG | 0.381512 | 5_4:+11951590 | None:intergenic |
GGTTTCCATTAGACTTCAAA+TGG | 0.386815 | 5_4:-11951630 | Msa0837850:three_prime_UTR |
ACTGTAAGTGCAGGAGGATA+AGG | 0.391252 | 5_4:-11952066 | Msa0837850:intron |
GAGATTAATTGAGATAAAAT+GGG | 0.393023 | 5_4:+11956131 | None:intergenic |
AAGGCCCATTTGAAGTCTAA+TGG | 0.399026 | 5_4:+11951625 | None:intergenic |
TGTGGCGGCTTGCCGGCGAT+TGG | 0.400407 | 5_4:-11955893 | Msa0837850:CDS |
TTGTTGTTGTGTAGGTTAAG+AGG | 0.404187 | 5_4:-11955211 | Msa0837850:intron |
AAGCAAGCTGAGGCAATAAC+TGG | 0.420014 | 5_4:-11955164 | Msa0837850:CDS |
TCAAAGAAGATTACCTGAAA+GGG | 0.429725 | 5_4:+11956093 | None:intergenic |
CCACGCTTTAAGGGCTCAGC+TGG | 0.431576 | 5_4:-11951868 | Msa0837850:CDS |
TCAGGAAATCCACGCTTTAA+GGG | 0.443180 | 5_4:-11951877 | Msa0837850:intron |
AGGAAACTAGAGAAGCTGTT+TGG | 0.457219 | 5_4:-11951712 | Msa0837850:three_prime_UTR |
GTTAGTTTCAGCATTCTGAT+TGG | 0.457445 | 5_4:+11952033 | None:intergenic |
TACCTGAAAGGGAATACAAT+AGG | 0.457810 | 5_4:+11956104 | None:intergenic |
ATGGGGATTAGGGAAGTAAA+TGG | 0.460452 | 5_4:+11956149 | None:intergenic |
CTGTAAGTGCAGGAGGATAA+GGG | 0.466625 | 5_4:-11952065 | Msa0837850:intron |
TAAATGGTGGGAATTAGAAA+AGG | 0.469675 | 5_4:+11956165 | None:intergenic |
TGGCGGCTTGCCGGCGATTG+GGG | 0.472945 | 5_4:-11955891 | Msa0837850:CDS |
CATCGATTTCAAATTGTTGG+AGG | 0.488755 | 5_4:-11955964 | Msa0837850:five_prime_UTR |
ATCAAAGAAGATTACCTGAA+AGG | 0.490859 | 5_4:+11956092 | None:intergenic |
TACATAGAACCCGAAATTGA+AGG | 0.491329 | 5_4:+11955796 | None:intergenic |
AAACAATTGCATGGCAGTGC+TGG | 0.492277 | 5_4:-11951665 | Msa0837850:three_prime_UTR |
GTGTAGGTTAAGAGGCTTGA+GGG | 0.492293 | 5_4:-11955203 | Msa0837850:intron |
TTGAGGACCAATTCCGGGGT+TGG | 0.493555 | 5_4:-11955865 | Msa0837850:CDS |
GCCGGCGATTGGGGAGATTG+AGG | 0.494997 | 5_4:-11955882 | Msa0837850:CDS |
GTTGGATTTAAACCTTGAAA+GGG | 0.496533 | 5_4:-11952185 | Msa0837850:CDS |
CTCCAACAATTTGAAATCGA+TGG | 0.499531 | 5_4:+11955965 | None:intergenic |
GGTTGGATTTAAACCTTGAA+AGG | 0.499726 | 5_4:-11952186 | Msa0837850:CDS |
TAAGCTTCTCAGTTTCGTGT+TGG | 0.504715 | 5_4:+11952375 | None:intergenic |
GAATCAAATGGCCGCTGTGG+CGG | 0.509153 | 5_4:-11955908 | Msa0837850:exon |
CTTGTTTCAATATCTGCTGT+TGG | 0.511375 | 5_4:-11951804 | Msa0837850:CDS |
GGAGAATGTATCTCGGTCAT+TGG | 0.516080 | 5_4:-11955111 | Msa0837850:CDS |
AAATGGTGGGAATTAGAAAA+GGG | 0.520968 | 5_4:+11956166 | None:intergenic |
GAGATAGATAAAGTCACGGC+TGG | 0.523910 | 5_4:-11952214 | Msa0837850:CDS |
AAAGCGTGTCATAATCGTAA+TGG | 0.525478 | 5_4:-11956273 | None:intergenic |
TCCTCAATCTCCCCAATCGC+CGG | 0.535142 | 5_4:+11955881 | None:intergenic |
CTGAAAGGGAATACAATAGG+AGG | 0.538638 | 5_4:+11956107 | None:intergenic |
TCGCCGGCAAGCCGCCACAG+CGG | 0.543052 | 5_4:+11955897 | None:intergenic |
CAGTGCTGGTGGAGCTGAAG+TGG | 0.543924 | 5_4:-11951651 | Msa0837850:three_prime_UTR |
TGAGGTGTTGAATGATAGCT+TGG | 0.550034 | 5_4:-11955132 | Msa0837850:CDS |
CGTGTTGGAGCAGAGAAAAG+TGG | 0.557662 | 5_4:+11952390 | None:intergenic |
CAATTGCATGGCAGTGCTGG+TGG | 0.559379 | 5_4:-11951662 | Msa0837850:three_prime_UTR |
AGTCACGGCTGGACAGCGGT+TGG | 0.560017 | 5_4:-11952203 | Msa0837850:CDS |
GTTTCCATTAGACTTCAAAT+GGG | 0.563495 | 5_4:-11951629 | Msa0837850:three_prime_UTR |
AGAAGATGCGTAGTGAATTG+AGG | 0.566616 | 5_4:-11952340 | Msa0837850:intron |
TGAAAGGGAATACAATAGGA+GGG | 0.569950 | 5_4:+11956108 | None:intergenic |
AGCAAGGCAAGTAAATGAGT+TGG | 0.574372 | 5_4:+11951531 | None:intergenic |
TTACATCAATATACGAAGAA+CGG | 0.580904 | 5_4:+11951776 | None:intergenic |
CACTGACAAAATTAAGGTGA+AGG | 0.581609 | 5_4:-11951732 | Msa0837850:three_prime_UTR |
GTTAAGAGGCTTGAGGGACA+AGG | 0.590914 | 5_4:-11955197 | Msa0837850:CDS |
TTGGAATCAAATGGCCGCTG+TGG | 0.593151 | 5_4:-11955911 | Msa0837850:exon |
CCAGCTGAGCCCTTAAAGCG+TGG | 0.594471 | 5_4:+11951868 | None:intergenic |
TTGGATTTAAACCTTGAAAG+GGG | 0.608817 | 5_4:-11952184 | Msa0837850:CDS |
GATGTGATAAAGTACTGCAT+AGG | 0.611784 | 5_4:-11951831 | Msa0837850:CDS |
AGATTAATTGAGATAAAATG+GGG | 0.617198 | 5_4:+11956132 | None:intergenic |
AACAGAAGTGCAGAGCTCAC+AGG | 0.617774 | 5_4:-11954848 | Msa0837850:intron |
GGGATTAGGGAAGTAAATGG+TGG | 0.617915 | 5_4:+11956152 | None:intergenic |
TGGATTTAAACCTTGAAAGG+GGG | 0.618514 | 5_4:-11952183 | Msa0837850:intron |
GGATTAGGGAAGTAAATGGT+GGG | 0.622002 | 5_4:+11956153 | None:intergenic |
GAGATTGAGGACCAATTCCG+GGG | 0.623639 | 5_4:-11955869 | Msa0837850:CDS |
TTGGTAAATCAAATGGACAA+CGG | 0.627930 | 5_4:-11955762 | Msa0837850:CDS |
ATAGCTTGGAGAATGTATCT+CGG | 0.632775 | 5_4:-11955118 | Msa0837850:CDS |
GAAAGGGAATACAATAGGAG+GGG | 0.636306 | 5_4:+11956109 | None:intergenic |
AATAACTGGTGCTATAACTG+AGG | 0.638529 | 5_4:-11955150 | Msa0837850:CDS |
CTGTAAGAGAAACAATTGCA+TGG | 0.642151 | 5_4:-11951674 | Msa0837850:three_prime_UTR |
ATCAAAAGAAGAAATGCAGA+GGG | 0.642450 | 5_4:-11955087 | Msa0837850:intron |
TATCAAAAGAAGAAATGCAG+AGG | 0.651897 | 5_4:-11955088 | Msa0837850:CDS |
AGTACTCACAAGCAACAGCA+AGG | 0.652229 | 5_4:+11951515 | None:intergenic |
AAAACCAGTTAAACCAACCC+CGG | 0.659053 | 5_4:+11955852 | None:intergenic |
TGTGTAGGTTAAGAGGCTTG+AGG | 0.667242 | 5_4:-11955204 | Msa0837850:intron |
GAATTAGAAAAGGGATTACG+CGG | 0.670151 | 5_4:+11956175 | None:intergenic |
ATAAAGTCACGGCTGGACAG+CGG | 0.681023 | 5_4:-11952207 | Msa0837850:CDS |
AGTGCCTTTAAAGCAAGCTG+AGG | 0.684635 | 5_4:-11955174 | Msa0837850:CDS |
GTATGAGATAGATAAAGTCA+CGG | 0.685262 | 5_4:-11952218 | Msa0837850:CDS |
TCAATATACGAAGAACGGCG+AGG | 0.726236 | 5_4:+11951781 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAATATCTATATTGAT+AGG | + | chr5_4:11951701-11951720 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTAATTACAC+AGG | - | chr5_4:11956207-11956226 | Msa0837850:five_prime_UTR | 10.0% |
!!! | CATTTTTGATTCAAAAAAAT+AGG | - | chr5_4:11951542-11951561 | Msa0837850:three_prime_UTR | 15.0% |
!!! | TTTTAAAATTAAAACCAAAC+CGG | + | chr5_4:11952265-11952284 | None:intergenic | 15.0% |
!!! | AATTAAAATCTGCATTTTTT+TGG | - | chr5_4:11952400-11952419 | Msa0837850:intron | 15.0% |
!! | ATTGTAAATAAGTTTCAAAA+GGG | + | chr5_4:11952712-11952731 | None:intergenic | 15.0% |
!! | AATTGTAAATAAGTTTCAAA+AGG | + | chr5_4:11952713-11952732 | None:intergenic | 15.0% |
!!! | ATGTAATAATGTTTTTTTGA+AGG | - | chr5_4:11952807-11952826 | Msa0837850:intron | 15.0% |
!!! | ATATGGTAATGAAATTTTAA+AGG | - | chr5_4:11953001-11953020 | Msa0837850:intron | 15.0% |
!! | AGTATTATAACAATATAAAC+TGG | + | chr5_4:11954872-11954891 | None:intergenic | 15.0% |
!! | TATATTCTCTTAAATAAGTT+TGG | - | chr5_4:11955154-11955173 | Msa0837850:CDS | 15.0% |
!! | TAATGAAAATATTATAATGC+AGG | - | chr5_4:11955347-11955366 | Msa0837850:intron | 15.0% |
!! | AATGAAAATATTATAATGCA+GGG | - | chr5_4:11955348-11955367 | Msa0837850:intron | 15.0% |
!! | TTAATATTAATACAATGTTC+AGG | - | chr5_4:11955869-11955888 | Msa0837850:CDS | 15.0% |
!! | AGATTAATTGAGATAAAATG+GGG | + | chr5_4:11951635-11951654 | None:intergenic | 20.0% |
!! | GAGATTAATTGAGATAAAAT+GGG | + | chr5_4:11951636-11951655 | None:intergenic | 20.0% |
!!! | AAATTTTAAAGGTTGAATGA+AGG | - | chr5_4:11953012-11953031 | Msa0837850:intron | 20.0% |
!!! | AATTTTAAAGGTTGAATGAA+GGG | - | chr5_4:11953013-11953032 | Msa0837850:intron | 20.0% |
!!! | TTTGGTTATATTTTTCTGAT+TGG | + | chr5_4:11953261-11953280 | None:intergenic | 20.0% |
!!! | ATGCTATTTTTAAAATCTTC+TGG | + | chr5_4:11953680-11953699 | None:intergenic | 20.0% |
!!! | GATTTTCAAAAACACATAAA+CGG | - | chr5_4:11953730-11953749 | Msa0837850:intron | 20.0% |
!! | AACATTCTAATTCTATTGTT+TGG | - | chr5_4:11954241-11954260 | Msa0837850:intron | 20.0% |
!! | AAGTGTCAATATTAAAAGTA+GGG | + | chr5_4:11954341-11954360 | None:intergenic | 20.0% |
!!! | AAAGTGTCAATATTAAAAGT+AGG | + | chr5_4:11954342-11954361 | None:intergenic | 20.0% |
!! | TGTTAATATTTGTCCTTTAT+CGG | - | chr5_4:11954610-11954629 | Msa0837850:intron | 20.0% |
!! | AAAAAAAAAGGAAGAAAGAA+TGG | - | chr5_4:11954730-11954749 | Msa0837850:intron | 20.0% |
!! | TTTGTATCATGAATAAAACT+AGG | + | chr5_4:11954776-11954795 | None:intergenic | 20.0% |
!! | ATAACAATATAAACTGGATT+TGG | + | chr5_4:11954866-11954885 | None:intergenic | 20.0% |
!!! | TTTTCAGGTAATAAACTTTA+TGG | - | chr5_4:11955498-11955517 | Msa0837850:intron | 20.0% |
!! | TCAAACATTAACAATCATAA+TGG | + | chr5_4:11955679-11955698 | None:intergenic | 20.0% |
!! | TAAAGAAAATCAAAATGACT+AGG | + | chr5_4:11955852-11955871 | None:intergenic | 20.0% |
!! | TTGAGATATGTAATGAATAT+GGG | + | chr5_4:11956177-11956196 | None:intergenic | 20.0% |
!!! | TTTGAGATATGTAATGAATA+TGG | + | chr5_4:11956178-11956197 | None:intergenic | 20.0% |
! | GGAGATTAATTGAGATAAAA+TGG | + | chr5_4:11951637-11951656 | None:intergenic | 25.0% |
!!! | TGCAATAAAGTTTGGTTTTT+TGG | - | chr5_4:11951834-11951853 | Msa0837850:CDS | 25.0% |
!!! | TTTGGTTTTTTGGAATCAAA+TGG | - | chr5_4:11951844-11951863 | Msa0837850:CDS | 25.0% |
!! | CAAATTTTCACCTTCAATTT+CGG | - | chr5_4:11951958-11951977 | Msa0837850:intron | 25.0% |
!! | AAATTTTCACCTTCAATTTC+GGG | - | chr5_4:11951959-11951978 | Msa0837850:intron | 25.0% |
!!! | TCTATGTATTTTTCTGGTTT+TGG | - | chr5_4:11951983-11952002 | Msa0837850:intron | 25.0% |
! | AGAGAAAATGTGAATTACAA+GGG | + | chr5_4:11952050-11952069 | None:intergenic | 25.0% |
! | AAGAGAAAATGTGAATTACA+AGG | + | chr5_4:11952051-11952070 | None:intergenic | 25.0% |
! | TTTCTTCATAACTAATCCAA+GGG | + | chr5_4:11952514-11952533 | None:intergenic | 25.0% |
! | TGAAACTTATTTACAATTCC+AGG | - | chr5_4:11952715-11952734 | Msa0837850:intron | 25.0% |
!! | TTACATAACTTTTTGCATCA+CGG | + | chr5_4:11952793-11952812 | None:intergenic | 25.0% |
! | TGCAAAAATAGTGTTATATG+TGG | - | chr5_4:11952950-11952969 | Msa0837850:intron | 25.0% |
! | TAATTGCAGGAAAAAAATCA+AGG | + | chr5_4:11953400-11953419 | None:intergenic | 25.0% |
! | GGCATATATTTATCCAAATA+TGG | - | chr5_4:11953481-11953500 | Msa0837850:intron | 25.0% |
!!! | ATTTCTTGCTGTTTGAATTT+AGG | + | chr5_4:11953633-11953652 | None:intergenic | 25.0% |
!! | GTAACAGAAATTTAGAACTA+TGG | + | chr5_4:11954025-11954044 | None:intergenic | 25.0% |
!!! | ACAAAGTTAAAATTTTCGAG+CGG | - | chr5_4:11954291-11954310 | Msa0837850:intron | 25.0% |
! | CAATATTAAAAGTAGGGAAA+AGG | + | chr5_4:11954335-11954354 | None:intergenic | 25.0% |
! | CAGTTGTACAATAAAAGAAA+GGG | + | chr5_4:11954391-11954410 | None:intergenic | 25.0% |
! | GTATGATAAGAAATGGAAAA+AGG | - | chr5_4:11954569-11954588 | Msa0837850:intron | 25.0% |
!! | ATATGAAATTCTAAAGACCA+GGG | + | chr5_4:11954645-11954664 | None:intergenic | 25.0% |
! | AAATTAGTAAAGCTCTGTTT+GGG | - | chr5_4:11954675-11954694 | Msa0837850:intron | 25.0% |
! | ATACAAAATCCTCCTAATTT+GGG | - | chr5_4:11954789-11954808 | Msa0837850:intron | 25.0% |
! | TAAAAAATTGTATTGGACGA+GGG | - | chr5_4:11954817-11954836 | Msa0837850:intron | 25.0% |
! | TTTGTTCTTGAAATTATCTG+TGG | - | chr5_4:11955098-11955117 | Msa0837850:CDS | 25.0% |
! | TTCTCTTAAATAAGTTTGGT+TGG | - | chr5_4:11955158-11955177 | Msa0837850:CDS | 25.0% |
!! | TAAATAAGTTTGGTTGGTAT+TGG | - | chr5_4:11955164-11955183 | Msa0837850:CDS | 25.0% |
!! | TTTTCATTATATGACCACAT+CGG | + | chr5_4:11955336-11955355 | None:intergenic | 25.0% |
!!! | ATGAAACTAGTAGTTGATAA+AGG | + | chr5_4:11955478-11955497 | None:intergenic | 25.0% |
!!! | AACTACTAGTTTCATTTTTC+AGG | - | chr5_4:11955483-11955502 | Msa0837850:intron | 25.0% |
! | GTACTTTATCACATCATATT+TGG | + | chr5_4:11955928-11955947 | None:intergenic | 25.0% |
! | TTACATCAATATACGAAGAA+CGG | + | chr5_4:11955991-11956010 | None:intergenic | 25.0% |
! | GATTAACACTGACAAAATTA+AGG | - | chr5_4:11956026-11956045 | Msa0837850:intron | 25.0% |
! | ATATGGGCTTGAAAAAAAAA+AGG | + | chr5_4:11956161-11956180 | None:intergenic | 25.0% |
! | AAATGGTGGGAATTAGAAAA+GGG | + | chr5_4:11951601-11951620 | None:intergenic | 30.0% |
! | TAAATGGTGGGAATTAGAAA+AGG | + | chr5_4:11951602-11951621 | None:intergenic | 30.0% |
TTGAGATAAAATGGGGATTA+GGG | + | chr5_4:11951628-11951647 | None:intergenic | 30.0% | |
ATTGAGATAAAATGGGGATT+AGG | + | chr5_4:11951629-11951648 | None:intergenic | 30.0% | |
TCAAAGAAGATTACCTGAAA+GGG | + | chr5_4:11951674-11951693 | None:intergenic | 30.0% | |
ATCAAAGAAGATTACCTGAA+AGG | + | chr5_4:11951675-11951694 | None:intergenic | 30.0% | |
! | CGATGGTCACATAAATTTTA+TGG | + | chr5_4:11951785-11951804 | None:intergenic | 30.0% |
! | TCAAATTGTTGGAGGAATTT+TGG | - | chr5_4:11951808-11951827 | Msa0837850:CDS | 30.0% |
! | CAAATTGTTGGAGGAATTTT+GGG | - | chr5_4:11951809-11951828 | Msa0837850:CDS | 30.0% |
! | AAATTGTTGGAGGAATTTTG+GGG | - | chr5_4:11951810-11951829 | Msa0837850:CDS | 30.0% |
CGAAATTGAAGGTGAAAATT+TGG | + | chr5_4:11951960-11951979 | None:intergenic | 30.0% | |
!!! | TCTGGTTTTGGTAAATCAAA+TGG | - | chr5_4:11951995-11952014 | Msa0837850:intron | 30.0% |
TTGGTAAATCAAATGGACAA+CGG | - | chr5_4:11952002-11952021 | Msa0837850:intron | 30.0% | |
CGGTTGAATTGTTAAAACAT+TGG | + | chr5_4:11952121-11952140 | None:intergenic | 30.0% | |
TTACTTTAGCAGTTTGACTA+CGG | + | chr5_4:11952196-11952215 | None:intergenic | 30.0% | |
TAATCTTAAACAAACAGCCA+CGG | + | chr5_4:11952344-11952363 | None:intergenic | 30.0% | |
AGATGATCCATATTCAAACT+CGG | - | chr5_4:11952363-11952382 | Msa0837850:CDS | 30.0% | |
ATCCAAATTCTTTATTCCCT+TGG | - | chr5_4:11952495-11952514 | Msa0837850:intron | 30.0% | |
ATCCAAGGGAATAAAGAATT+TGG | + | chr5_4:11952500-11952519 | None:intergenic | 30.0% | |
CTTTCTTCATAACTAATCCA+AGG | + | chr5_4:11952515-11952534 | None:intergenic | 30.0% | |
!! | CTTGGATTAGTTATGAAGAA+AGG | - | chr5_4:11952513-11952532 | Msa0837850:intron | 30.0% |
TTAACCTACACAACAACAAA+GGG | + | chr5_4:11952552-11952571 | None:intergenic | 30.0% | |
TATCAAAAGAAGAAATGCAG+AGG | - | chr5_4:11952676-11952695 | Msa0837850:intron | 30.0% | |
ATCAAAAGAAGAAATGCAGA+GGG | - | chr5_4:11952677-11952696 | Msa0837850:intron | 30.0% | |
TAAATAAGTTTCAAAAGGGC+AGG | + | chr5_4:11952708-11952727 | None:intergenic | 30.0% | |
TATTTACAATTCCAGGAATG+TGG | - | chr5_4:11952722-11952741 | Msa0837850:intron | 30.0% | |
ATTTACAATTCCAGGAATGT+GGG | - | chr5_4:11952723-11952742 | Msa0837850:intron | 30.0% | |
!! | TGTACTAATGTTAGCTCTTT+TGG | - | chr5_4:11952836-11952855 | Msa0837850:intron | 30.0% |
TTCTATTTCCTTGTGTTCTT+AGG | + | chr5_4:11953221-11953240 | None:intergenic | 30.0% | |
!! | GCAAGATATTTTTGCCATTT+TGG | + | chr5_4:11953308-11953327 | None:intergenic | 30.0% |
!! | TTGCTGAGGAAAATTTTAGT+AGG | + | chr5_4:11953330-11953349 | None:intergenic | 30.0% |
! | GGAGATCTTTTTATTGCATT+TGG | + | chr5_4:11953379-11953398 | None:intergenic | 30.0% |
!! | TCTGATTTGGAATTGTACTT+GGG | + | chr5_4:11953431-11953450 | None:intergenic | 30.0% |
ATAGAATGAAAATCCAAGCT+AGG | - | chr5_4:11953460-11953479 | Msa0837850:intron | 30.0% | |
TATCCAAATATGGTGAGATA+CGG | - | chr5_4:11953491-11953510 | Msa0837850:intron | 30.0% | |
AAAAGGACTTTGGATTTCAA+AGG | + | chr5_4:11953785-11953804 | None:intergenic | 30.0% | |
! | CAGAAATTTAGAACTATGGT+TGG | + | chr5_4:11954021-11954040 | None:intergenic | 30.0% |
CTAAATTTCTGTTACAGCTA+AGG | - | chr5_4:11954030-11954049 | Msa0837850:intron | 30.0% | |
TTACATGTACATCTACTTGT+TGG | - | chr5_4:11954120-11954139 | Msa0837850:intron | 30.0% | |
AATGACAAAGAATGTCTACT+TGG | + | chr5_4:11954204-11954223 | None:intergenic | 30.0% | |
TGTACAATAAAAGAAAGGGA+AGG | + | chr5_4:11954387-11954406 | None:intergenic | 30.0% | |
GCAGTTGTACAATAAAAGAA+AGG | + | chr5_4:11954392-11954411 | None:intergenic | 30.0% | |
TAAGTGACACCAATATCAAA+AGG | + | chr5_4:11954473-11954492 | None:intergenic | 30.0% | |
CCATTTCTTATCATACAATC+TGG | + | chr5_4:11954565-11954584 | None:intergenic | 30.0% | |
CCAGATTGTATGATAAGAAA+TGG | - | chr5_4:11954562-11954581 | Msa0837850:intron | 30.0% | |
ATATTTGTCCTTTATCGGAA+TGG | - | chr5_4:11954615-11954634 | Msa0837850:intron | 30.0% | |
! | CATATGAAATTCTAAAGACC+AGG | + | chr5_4:11954646-11954665 | None:intergenic | 30.0% |
GAAATTAGTAAAGCTCTGTT+TGG | - | chr5_4:11954674-11954693 | Msa0837850:intron | 30.0% | |
GGAGAGCTTGAAAAAAAAAA+AGG | - | chr5_4:11954718-11954737 | Msa0837850:intron | 30.0% | |
GATACAAAATCCTCCTAATT+TGG | - | chr5_4:11954788-11954807 | Msa0837850:intron | 30.0% | |
TACAAAATCCTCCTAATTTG+GGG | - | chr5_4:11954790-11954809 | Msa0837850:intron | 30.0% | |
!!! | TTTTTTAGTTCCCCCAAATT+AGG | + | chr5_4:11954804-11954823 | None:intergenic | 30.0% |
GGGGAACTAAAAAATTGTAT+TGG | - | chr5_4:11954810-11954829 | Msa0837850:intron | 30.0% | |
CTAAAAAATTGTATTGGACG+AGG | - | chr5_4:11954816-11954835 | Msa0837850:intron | 30.0% | |
!!! | ACACTCGCAATTTTTTTTGA+AGG | - | chr5_4:11954948-11954967 | Msa0837850:intron | 30.0% |
! | ATATACGTATTTTCCATCAC+AGG | + | chr5_4:11955137-11955156 | None:intergenic | 30.0% |
! | AAGATTTAGGACATTATGCA+GGG | - | chr5_4:11955191-11955210 | Msa0837850:CDS | 30.0% |
TTATAAGGACAAGGAAAACA+AGG | + | chr5_4:11955269-11955288 | None:intergenic | 30.0% | |
TTGTCCTTATAATGTTTCCT+CGG | - | chr5_4:11955277-11955296 | Msa0837850:intron | 30.0% | |
TTTCATTATATGACCACATC+GGG | + | chr5_4:11955335-11955354 | None:intergenic | 30.0% | |
GTATGAGATAGATAAAGTCA+CGG | - | chr5_4:11955546-11955565 | Msa0837850:intron | 30.0% | |
GTTGGATTTAAACCTTGAAA+GGG | - | chr5_4:11955579-11955598 | Msa0837850:intron | 30.0% | |
TTGGATTTAAACCTTGAAAG+GGG | - | chr5_4:11955580-11955599 | Msa0837850:intron | 30.0% | |
GTTTCCATTAGACTTCAAAT+GGG | - | chr5_4:11956135-11956154 | Msa0837850:five_prime_UTR | 30.0% | |
GAATTAGAAAAGGGATTACG+CGG | + | chr5_4:11951592-11951611 | None:intergenic | 35.0% | |
TGAAAGGGAATACAATAGGA+GGG | + | chr5_4:11951659-11951678 | None:intergenic | 35.0% | |
TACCTGAAAGGGAATACAAT+AGG | + | chr5_4:11951663-11951682 | None:intergenic | 35.0% | |
!! | GACCATCGATTTCAAATTGT+TGG | - | chr5_4:11951797-11951816 | Msa0837850:CDS | 35.0% |
! | CTCCAACAATTTGAAATCGA+TGG | + | chr5_4:11951802-11951821 | None:intergenic | 35.0% |
!! | CATCGATTTCAAATTGTTGG+AGG | - | chr5_4:11951800-11951819 | Msa0837850:CDS | 35.0% |
! | TTTGGGGTTGCAATAAAGTT+TGG | - | chr5_4:11951826-11951845 | Msa0837850:CDS | 35.0% |
TACATAGAACCCGAAATTGA+AGG | + | chr5_4:11951971-11951990 | None:intergenic | 35.0% | |
! | TCGGGTTCTATGTATTTTTC+TGG | - | chr5_4:11951977-11951996 | Msa0837850:intron | 35.0% |
TGAAATTGAATATGACCCAG+AGG | + | chr5_4:11952162-11952181 | None:intergenic | 35.0% | |
CTGCTAAAGTAAATGAACTG+TGG | - | chr5_4:11952204-11952223 | Msa0837850:CDS | 35.0% | |
! | AAACACTGCCATTTCATTTG+TGG | - | chr5_4:11952283-11952302 | Msa0837850:intron | 35.0% |
CAAAATGCCGAGTTTGAATA+TGG | + | chr5_4:11952373-11952392 | None:intergenic | 35.0% | |
CTTAACCTACACAACAACAA+AGG | + | chr5_4:11952553-11952572 | None:intergenic | 35.0% | |
! | TTGTTGTTGTGTAGGTTAAG+AGG | - | chr5_4:11952553-11952572 | Msa0837850:intron | 35.0% |
!! | AATAACTGGTGCTATAACTG+AGG | - | chr5_4:11952614-11952633 | Msa0837850:intron | 35.0% |
ATAGCTTGGAGAATGTATCT+CGG | - | chr5_4:11952646-11952665 | Msa0837850:intron | 35.0% | |
!! | TGTTTTGAATTTGGACAGGT+TGG | + | chr5_4:11952900-11952919 | None:intergenic | 35.0% |
!! | CTTCTGTTTTGAATTTGGAC+AGG | + | chr5_4:11952904-11952923 | None:intergenic | 35.0% |
!! | CTGCACTTCTGTTTTGAATT+TGG | + | chr5_4:11952909-11952928 | None:intergenic | 35.0% |
! | TATGTGGACTTTGATGACTT+AGG | - | chr5_4:11952966-11952985 | Msa0837850:intron | 35.0% |
TTAGGTGCATGTGTATGATA+TGG | - | chr5_4:11952984-11953003 | Msa0837850:intron | 35.0% | |
TGCTTTAGTGTTGTAGACAT+AGG | - | chr5_4:11953075-11953094 | Msa0837850:intron | 35.0% | |
GGACTTGTATTGTAAAAGGT+TGG | + | chr5_4:11953194-11953213 | None:intergenic | 35.0% | |
TGCTGGACTTGTATTGTAAA+AGG | + | chr5_4:11953198-11953217 | None:intergenic | 35.0% | |
CACAAGGAAATAGAAGAGAT+TGG | - | chr5_4:11953226-11953245 | Msa0837850:intron | 35.0% | |
! | TCAAAGTCGAAATGTGGTTT+TGG | + | chr5_4:11953279-11953298 | None:intergenic | 35.0% |
ACTTGATCAAAGTCGAAATG+TGG | + | chr5_4:11953285-11953304 | None:intergenic | 35.0% | |
GACTTTGATCAAGTCCAAAA+TGG | - | chr5_4:11953291-11953310 | Msa0837850:intron | 35.0% | |
!! | CTCTGATTTGGAATTGTACT+TGG | + | chr5_4:11953432-11953451 | None:intergenic | 35.0% |
CAAGTACAATTCCAAATCAG+AGG | - | chr5_4:11953430-11953449 | Msa0837850:intron | 35.0% | |
TACAATTCCAAATCAGAGGA+AGG | - | chr5_4:11953434-11953453 | Msa0837850:intron | 35.0% | |
GGATAAATATATGCCTAGCT+TGG | + | chr5_4:11953476-11953495 | None:intergenic | 35.0% | |
! | TTATTCCTCTGAAGGTGAAA+AGG | + | chr5_4:11953802-11953821 | None:intergenic | 35.0% |
!! | TATTGTGTTGGTCTTGAAGA+TGG | + | chr5_4:11953890-11953909 | None:intergenic | 35.0% |
GTTCCAACTATCTGAAGATA+AGG | + | chr5_4:11953952-11953971 | None:intergenic | 35.0% | |
AGAACTATGGTTGGATACTA+TGG | + | chr5_4:11954012-11954031 | None:intergenic | 35.0% | |
AGCTAAGGAAAACCAAAGAA+AGG | - | chr5_4:11954045-11954064 | Msa0837850:intron | 35.0% | |
GCTAAGGAAAACCAAAGAAA+GGG | - | chr5_4:11954046-11954065 | Msa0837850:intron | 35.0% | |
CTAAGGAAAACCAAAGAAAG+GGG | - | chr5_4:11954047-11954066 | Msa0837850:intron | 35.0% | |
!!! | TTTTTTGTGTCCCCTTTCTT+TGG | + | chr5_4:11954060-11954079 | None:intergenic | 35.0% |
TAGATCTTTCTACCAACTTG+AGG | - | chr5_4:11954092-11954111 | Msa0837850:intron | 35.0% | |
TTGTTGGTATGCTACACATT+AGG | - | chr5_4:11954136-11954155 | Msa0837850:intron | 35.0% | |
TGCGTAGTAAAAACATGAGA+AGG | + | chr5_4:11954177-11954196 | None:intergenic | 35.0% | |
!! | ATATCAAAAGGCATCAATCG+AGG | + | chr5_4:11954461-11954480 | None:intergenic | 35.0% |
! | CGATTGATGCCTTTTGATAT+TGG | - | chr5_4:11954461-11954480 | Msa0837850:intron | 35.0% |
!! | TGGTGTCACTTATGCATATA+AGG | - | chr5_4:11954481-11954500 | Msa0837850:intron | 35.0% |
AAGAAAGAATGGAGAGCTTT+GGG | - | chr5_4:11954741-11954760 | Msa0837850:intron | 35.0% | |
ACAAAATCCTCCTAATTTGG+GGG | - | chr5_4:11954791-11954810 | Msa0837850:intron | 35.0% | |
GACTTGTGATCTTCAAACTA+AGG | - | chr5_4:11955071-11955090 | Msa0837850:intron | 35.0% | |
TTATTGAAGCAATCCTGTGA+TGG | - | chr5_4:11955121-11955140 | Msa0837850:CDS | 35.0% | |
!! | TGGTATTGGTTGCAAGATTT+AGG | - | chr5_4:11955178-11955197 | Msa0837850:CDS | 35.0% |
! | CAAGATTTAGGACATTATGC+AGG | - | chr5_4:11955190-11955209 | Msa0837850:CDS | 35.0% |
AAGTAACTTCAGCAGAAAGA+TGG | + | chr5_4:11955219-11955238 | None:intergenic | 35.0% | |
GAGGAAACATTATAAGGACA+AGG | + | chr5_4:11955278-11955297 | None:intergenic | 35.0% | |
AAGGAAAGTCGATGAAATCA+AGG | + | chr5_4:11955459-11955478 | None:intergenic | 35.0% | |
AACTTTATGGTGCATTGTTC+TGG | - | chr5_4:11955511-11955530 | Msa0837850:intron | 35.0% | |
ACTTTATGGTGCATTGTTCT+GGG | - | chr5_4:11955512-11955531 | Msa0837850:intron | 35.0% | |
GGTTGGATTTAAACCTTGAA+AGG | - | chr5_4:11955578-11955597 | Msa0837850:intron | 35.0% | |
TGGATTTAAACCTTGAAAGG+GGG | - | chr5_4:11955581-11955600 | Msa0837850:intron | 35.0% | |
TTCAGTAATGCTCAGACAAT+TGG | + | chr5_4:11955627-11955646 | None:intergenic | 35.0% | |
TAATGTTTGACTGTAAGTGC+AGG | - | chr5_4:11955689-11955708 | Msa0837850:intron | 35.0% | |
! | GTTAGTTTCAGCATTCTGAT+TGG | + | chr5_4:11955734-11955753 | None:intergenic | 35.0% |
!! | CTCTATCAAGTTTGTTAGTC+AGG | + | chr5_4:11955759-11955778 | None:intergenic | 35.0% |
!! | GATGTGATAAAGTACTGCAT+AGG | - | chr5_4:11955933-11955952 | Msa0837850:five_prime_UTR | 35.0% |
CTTGTTTCAATATCTGCTGT+TGG | - | chr5_4:11955960-11955979 | Msa0837850:five_prime_UTR | 35.0% | |
CACTGACAAAATTAAGGTGA+AGG | - | chr5_4:11956032-11956051 | Msa0837850:intron | 35.0% | |
CTGTAAGAGAAACAATTGCA+TGG | - | chr5_4:11956090-11956109 | Msa0837850:intron | 35.0% | |
GGTTTCCATTAGACTTCAAA+TGG | - | chr5_4:11956134-11956153 | Msa0837850:five_prime_UTR | 35.0% | |
AAAGGGATTACGCGGTTTAT+TGG | + | chr5_4:11951584-11951603 | None:intergenic | 40.0% | |
GGATTAGGGAAGTAAATGGT+GGG | + | chr5_4:11951614-11951633 | None:intergenic | 40.0% | |
ATGGGGATTAGGGAAGTAAA+TGG | + | chr5_4:11951618-11951637 | None:intergenic | 40.0% | |
GAAAGGGAATACAATAGGAG+GGG | + | chr5_4:11951658-11951677 | None:intergenic | 40.0% | |
CTGAAAGGGAATACAATAGG+AGG | + | chr5_4:11951660-11951679 | None:intergenic | 40.0% | |
CTCCTATTGTATTCCCTTTC+AGG | - | chr5_4:11951658-11951677 | Msa0837850:three_prime_UTR | 40.0% | |
AAAACCAGTTAAACCAACCC+CGG | + | chr5_4:11951915-11951934 | None:intergenic | 40.0% | |
!!! | GTTGGTTTAACTGGTTTTGC+TGG | - | chr5_4:11951917-11951936 | Msa0837850:intron | 40.0% |
!!! | TTAACTGGTTTTGCTGGCTA+TGG | - | chr5_4:11951923-11951942 | Msa0837850:intron | 40.0% |
AGTTTGACTACGGTTTAAGG+CGG | + | chr5_4:11952186-11952205 | None:intergenic | 40.0% | |
AGCAGTTTGACTACGGTTTA+AGG | + | chr5_4:11952189-11952208 | None:intergenic | 40.0% | |
CTGTGGTAAAGACATGTTCA+AGG | - | chr5_4:11952221-11952240 | Msa0837850:CDS | 40.0% | |
GTTTAACCGATTGAACTGTC+CGG | - | chr5_4:11952243-11952262 | Msa0837850:intron | 40.0% | |
TCATCCGATCTTTGACCAAA+AGG | - | chr5_4:11952424-11952443 | Msa0837850:intron | 40.0% | |
! | ATTGCCTCAGCTTGCTTTAA+AGG | + | chr5_4:11952597-11952616 | None:intergenic | 40.0% |
!! | TGAGGTGTTGAATGATAGCT+TGG | - | chr5_4:11952632-11952651 | Msa0837850:intron | 40.0% |
CAATGAAAATCCCACATTCC+TGG | + | chr5_4:11952736-11952755 | None:intergenic | 40.0% | |
TGCGAATAAATGTGAGTGCA+AGG | - | chr5_4:11953156-11953175 | Msa0837850:intron | 40.0% | |
AATGTGAGTGCAAGGAGTAA+TGG | - | chr5_4:11953164-11953183 | Msa0837850:intron | 40.0% | |
CTATATGCCTTCCTCTGATT+TGG | + | chr5_4:11953444-11953463 | None:intergenic | 40.0% | |
GTTCCGTATCTCACCATATT+TGG | + | chr5_4:11953497-11953516 | None:intergenic | 40.0% | |
!! | AGGTGTTGTTAATTCTGCAG+GGG | + | chr5_4:11953577-11953596 | None:intergenic | 40.0% |
!! | GAGGTGTTGTTAATTCTGCA+GGG | + | chr5_4:11953578-11953597 | None:intergenic | 40.0% |
!! | AGAGGTGTTGTTAATTCTGC+AGG | + | chr5_4:11953579-11953598 | None:intergenic | 40.0% |
!! | CTTGCTGTTTGAATTTAGGC+AGG | + | chr5_4:11953629-11953648 | None:intergenic | 40.0% |
AGCATCAGCAGAAATCAAAG+AGG | - | chr5_4:11953695-11953714 | Msa0837850:intron | 40.0% | |
GCATCAGCAGAAATCAAAGA+GGG | - | chr5_4:11953696-11953715 | Msa0837850:intron | 40.0% | |
AGGACTTTGGATTTCAAAGG+AGG | + | chr5_4:11953782-11953801 | None:intergenic | 40.0% | |
TCTGAAGGTGAAAAGGACTT+TGG | + | chr5_4:11953795-11953814 | None:intergenic | 40.0% | |
! | AAAGTCCTTTTCACCTTCAG+AGG | - | chr5_4:11953794-11953813 | Msa0837850:intron | 40.0% |
GAGAATATCCTCTCTAGCAT+GGG | + | chr5_4:11953868-11953887 | None:intergenic | 40.0% | |
GGAAGGATGATGTATTGTGT+TGG | + | chr5_4:11953902-11953921 | None:intergenic | 40.0% | |
TCATTATTGACATGGGAGAG+TGG | + | chr5_4:11953923-11953942 | None:intergenic | 40.0% | |
CTCTCCCATGTCAATAATGA+AGG | - | chr5_4:11953923-11953942 | Msa0837850:intron | 40.0% | |
GAGGCCTTCATTATTGACAT+GGG | + | chr5_4:11953930-11953949 | None:intergenic | 40.0% | |
CCAACTATCTGAAGATAAGG+AGG | + | chr5_4:11953949-11953968 | None:intergenic | 40.0% | |
CCTCCTTATCTTCAGATAGT+TGG | - | chr5_4:11953946-11953965 | Msa0837850:intron | 40.0% | |
! | ACTTCCAATCTTTGTTTCCG+AGG | + | chr5_4:11953977-11953996 | None:intergenic | 40.0% |
CTATGGTTGGATACTATGGT+TGG | + | chr5_4:11954008-11954027 | None:intergenic | 40.0% | |
CATGTAACAAAGCCTCAAGT+TGG | + | chr5_4:11954107-11954126 | None:intergenic | 40.0% | |
GTTTGTCATGATGTTGTCAC+TGG | - | chr5_4:11954421-11954440 | Msa0837850:intron | 40.0% | |
GTCACTTATGCATATAAGGC+TGG | - | chr5_4:11954485-11954504 | Msa0837850:intron | 40.0% | |
GGTGCAAAGAGTGATAATTC+TGG | - | chr5_4:11954506-11954525 | Msa0837850:intron | 40.0% | |
GCAAAGAGTGATAATTCTGG+AGG | - | chr5_4:11954509-11954528 | Msa0837850:intron | 40.0% | |
TAAAGCTCTGTTTGGGAGTT+TGG | - | chr5_4:11954682-11954701 | Msa0837850:intron | 40.0% | |
GAAGAAAGAATGGAGAGCTT+TGG | - | chr5_4:11954740-11954759 | Msa0837850:intron | 40.0% | |
! | TTTAGTTCCCCCAAATTAGG+AGG | + | chr5_4:11954801-11954820 | None:intergenic | 40.0% |
! | ATTGTATTGGACGAGGGTTT+TGG | - | chr5_4:11954823-11954842 | Msa0837850:intron | 40.0% |
! | TTGTATTGGACGAGGGTTTT+GGG | - | chr5_4:11954824-11954843 | Msa0837850:intron | 40.0% |
!! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr5_4:11955031-11955050 | None:intergenic | 40.0% |
TGCACCGAGGAAACATTATA+AGG | + | chr5_4:11955284-11955303 | None:intergenic | 40.0% | |
!!! | TGACTTTTTTTTGCCCGATG+TGG | - | chr5_4:11955319-11955338 | Msa0837850:intron | 40.0% |
TAAGCTTCTCAGTTTCGTGT+TGG | + | chr5_4:11955392-11955411 | None:intergenic | 40.0% | |
AGAAGATGCGTAGTGAATTG+AGG | - | chr5_4:11955424-11955443 | Msa0837850:intron | 40.0% | |
GTAATTCTTACCCCCTTTCA+AGG | + | chr5_4:11955594-11955613 | None:intergenic | 40.0% | |
TTCAGGAAATCCACGCTTTA+AGG | - | chr5_4:11955886-11955905 | Msa0837850:CDS | 40.0% | |
TCAGGAAATCCACGCTTTAA+GGG | - | chr5_4:11955887-11955906 | Msa0837850:CDS | 40.0% | |
AGGAAACTAGAGAAGCTGTT+TGG | - | chr5_4:11956052-11956071 | Msa0837850:intron | 40.0% | |
! | AAGGCCCATTTGAAGTCTAA+TGG | + | chr5_4:11956142-11956161 | None:intergenic | 40.0% |
AGCAAGGCAAGTAAATGAGT+TGG | + | chr5_4:11956236-11956255 | None:intergenic | 40.0% | |
GGGATTAGGGAAGTAAATGG+TGG | + | chr5_4:11951615-11951634 | None:intergenic | 45.0% | |
AGTTAAACCAACCCCGGAAT+TGG | + | chr5_4:11951909-11951928 | None:intergenic | 45.0% | |
!! | AATTCCGGGGTTGGTTTAAC+TGG | - | chr5_4:11951908-11951927 | Msa0837850:intron | 45.0% |
!! | GGTTTTGCTGGCTATGGAAT+TGG | - | chr5_4:11951929-11951948 | Msa0837850:intron | 45.0% |
GGTTTCGATGGTTCGTTGTT+CGG | + | chr5_4:11952141-11952160 | None:intergenic | 45.0% | |
AACGAACCATCGAAACCTCT+GGG | - | chr5_4:11952144-11952163 | Msa0837850:intron | 45.0% | |
ATATGACCCAGAGGTTTCGA+TGG | + | chr5_4:11952153-11952172 | None:intergenic | 45.0% | |
ACCAAACCGGACAGTTCAAT+CGG | + | chr5_4:11952252-11952271 | None:intergenic | 45.0% | |
! | TGCCATTTCATTTGTGGACC+CGG | - | chr5_4:11952289-11952308 | Msa0837850:intron | 45.0% |
! | GTGGCCTTTTGGTCAAAGAT+CGG | + | chr5_4:11952431-11952450 | None:intergenic | 45.0% |
!! | TGCACCCTTTGTTGTTGTGT+AGG | - | chr5_4:11952545-11952564 | Msa0837850:intron | 45.0% |
TGTGTAGGTTAAGAGGCTTG+AGG | - | chr5_4:11952560-11952579 | Msa0837850:intron | 45.0% | |
GTGTAGGTTAAGAGGCTTGA+GGG | - | chr5_4:11952561-11952580 | Msa0837850:intron | 45.0% | |
!! | AGTGCCTTTAAAGCAAGCTG+AGG | - | chr5_4:11952590-11952609 | Msa0837850:intron | 45.0% |
AAGCAAGCTGAGGCAATAAC+TGG | - | chr5_4:11952600-11952619 | Msa0837850:intron | 45.0% | |
GGAGAATGTATCTCGGTCAT+TGG | - | chr5_4:11952653-11952672 | Msa0837850:intron | 45.0% | |
TTCCTTGTGTTCTTAGGTGC+TGG | + | chr5_4:11953215-11953234 | None:intergenic | 45.0% | |
TGGTCTCTATTTGGTTGCTG+AGG | + | chr5_4:11953344-11953363 | None:intergenic | 45.0% | |
TTATTGCATTTGGCACGCTG+CGG | + | chr5_4:11953369-11953388 | None:intergenic | 45.0% | |
TTTAGGCAGGTTGTCCACAA+GGG | + | chr5_4:11953616-11953635 | None:intergenic | 45.0% | |
ATTTAGGCAGGTTGTCCACA+AGG | + | chr5_4:11953617-11953636 | None:intergenic | 45.0% | |
GCGGTCATTTATTCCTCTGA+AGG | + | chr5_4:11953810-11953829 | None:intergenic | 45.0% | |
AGGAATAAATGACCGCAACC+AGG | - | chr5_4:11953814-11953833 | Msa0837850:intron | 45.0% | |
GGAATAAATGACCGCAACCA+GGG | - | chr5_4:11953815-11953834 | Msa0837850:intron | 45.0% | |
! | GAAGACTTGGTCAGTGAACT+AGG | + | chr5_4:11953843-11953862 | None:intergenic | 45.0% |
TCTAGCATGGGAAGAAGACT+TGG | + | chr5_4:11953856-11953875 | None:intergenic | 45.0% | |
GGAGAATATCCTCTCTAGCA+TGG | + | chr5_4:11953869-11953888 | None:intergenic | 45.0% | |
TATTGACATGGGAGAGTGGA+AGG | + | chr5_4:11953919-11953938 | None:intergenic | 45.0% | |
GGAGGCCTTCATTATTGACA+TGG | + | chr5_4:11953931-11953950 | None:intergenic | 45.0% | |
TCAGATAGTTGGAACGACCT+CGG | - | chr5_4:11953957-11953976 | Msa0837850:intron | 45.0% | |
ACGACCTCGGAAACAAAGAT+TGG | - | chr5_4:11953970-11953989 | Msa0837850:intron | 45.0% | |
AGGGAGAACCATTCCGATAA+AGG | + | chr5_4:11954626-11954645 | None:intergenic | 45.0% | |
TTTATCGGAATGGTTCTCCC+TGG | - | chr5_4:11954625-11954644 | Msa0837850:intron | 45.0% | |
TTTGGGAGTTTGGAGAGGAT+GGG | - | chr5_4:11954692-11954711 | Msa0837850:intron | 45.0% | |
!! | AAAGAATGGAGAGCTTTGGG+AGG | - | chr5_4:11954744-11954763 | Msa0837850:intron | 45.0% |
! | TGTATTGGACGAGGGTTTTG+GGG | - | chr5_4:11954825-11954844 | Msa0837850:intron | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr5_4:11955026-11955045 | None:intergenic | 45.0% |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr5_4:11955027-11955046 | None:intergenic | 45.0% |
!! | GAGTGGGTTAGGCTTTGTTT+GGG | + | chr5_4:11955038-11955057 | None:intergenic | 45.0% |
TCACAAGTCAGCTAGCCAAA+GGG | + | chr5_4:11955060-11955079 | None:intergenic | 45.0% | |
ATCACAAGTCAGCTAGCCAA+AGG | + | chr5_4:11955061-11955080 | None:intergenic | 45.0% | |
CTCAATTCGATAATGCACCG+AGG | + | chr5_4:11955297-11955316 | None:intergenic | 45.0% | |
ATGCGTAGTGAATTGAGGTC+TGG | - | chr5_4:11955429-11955448 | Msa0837850:intron | 45.0% | |
! | ATTGTTCTGGGTTGTGGTGT+AGG | - | chr5_4:11955524-11955543 | Msa0837850:intron | 45.0% |
GAGATAGATAAAGTCACGGC+TGG | - | chr5_4:11955550-11955569 | Msa0837850:intron | 45.0% | |
TGTTTGACTGTAAGTGCAGG+AGG | - | chr5_4:11955692-11955711 | Msa0837850:intron | 45.0% | |
ACTGTAAGTGCAGGAGGATA+AGG | - | chr5_4:11955698-11955717 | Msa0837850:intron | 45.0% | |
CTGTAAGTGCAGGAGGATAA+GGG | - | chr5_4:11955699-11955718 | Msa0837850:intron | 45.0% | |
TCAATATACGAAGAACGGCG+AGG | + | chr5_4:11955986-11956005 | None:intergenic | 45.0% | |
AAACAATTGCATGGCAGTGC+TGG | - | chr5_4:11956099-11956118 | Msa0837850:intron | 45.0% | |
AGTACTCACAAGCAACAGCA+AGG | + | chr5_4:11956252-11956271 | None:intergenic | 45.0% | |
TTGGAATCAAATGGCCGCTG+TGG | - | chr5_4:11951853-11951872 | Msa0837850:CDS | 50.0% | |
GGGAGATTGAGGACCAATTC+CGG | - | chr5_4:11951893-11951912 | Msa0837850:intron | 50.0% | |
GGAGATTGAGGACCAATTCC+GGG | - | chr5_4:11951894-11951913 | Msa0837850:intron | 50.0% | |
GAGATTGAGGACCAATTCCG+GGG | - | chr5_4:11951895-11951914 | Msa0837850:intron | 50.0% | |
CAACGAACCATCGAAACCTC+TGG | - | chr5_4:11952143-11952162 | Msa0837850:intron | 50.0% | |
ACCGATTGAACTGTCCGGTT+TGG | - | chr5_4:11952248-11952267 | Msa0837850:intron | 50.0% | |
GCCATTTCATTTGTGGACCC+GGG | - | chr5_4:11952290-11952309 | Msa0837850:intron | 50.0% | |
TGTGGGATCTTCTGACTGCA+AGG | - | chr5_4:11952471-11952490 | Msa0837850:intron | 50.0% | |
GTTAAGAGGCTTGAGGGACA+AGG | - | chr5_4:11952567-11952586 | Msa0837850:intron | 50.0% | |
! | AACAGAAGTGCAGAGCTCAC+AGG | - | chr5_4:11952916-11952935 | Msa0837850:intron | 50.0% |
GTCCAGCACCTAAGAACACA+AGG | - | chr5_4:11953210-11953229 | Msa0837850:intron | 50.0% | |
GCTGCGGAATGGTCTCTATT+TGG | + | chr5_4:11953353-11953372 | None:intergenic | 50.0% | |
TTGGGCAGCTAGCTAATTGC+AGG | + | chr5_4:11953413-11953432 | None:intergenic | 50.0% | |
GTCTTCTTCCCATGCTAGAG+AGG | - | chr5_4:11953857-11953876 | Msa0837850:intron | 50.0% | |
CTCTGTTTGGGAGTTTGGAG+AGG | - | chr5_4:11954687-11954706 | Msa0837850:intron | 50.0% | |
GTTTGGGAGTTTGGAGAGGA+TGG | - | chr5_4:11954691-11954710 | Msa0837850:intron | 50.0% | |
GAGTTTGGAGAGGATGGGAA+GGG | - | chr5_4:11954697-11954716 | Msa0837850:intron | 50.0% | |
!! | GTATTGGACGAGGGTTTTGG+GGG | - | chr5_4:11954826-11954845 | Msa0837850:intron | 50.0% |
TTTGGGAGTTTGGAGGGGAA+GGG | + | chr5_4:11955021-11955040 | None:intergenic | 50.0% | |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr5_4:11955028-11955047 | None:intergenic | 50.0% |
!! | GGAGTGGGTTAGGCTTTGTT+TGG | + | chr5_4:11955039-11955058 | None:intergenic | 50.0% |
AAAGCCTAACCCACTCCCTT+TGG | - | chr5_4:11955042-11955061 | Msa0837850:intron | 50.0% | |
CGTGTTGGAGCAGAGAAAAG+TGG | + | chr5_4:11955377-11955396 | None:intergenic | 50.0% | |
! | TGGTGCATTGTTCTGGGTTG+TGG | - | chr5_4:11955518-11955537 | Msa0837850:intron | 50.0% |
ATAAAGTCACGGCTGGACAG+CGG | - | chr5_4:11955557-11955576 | Msa0837850:intron | 50.0% | |
GAATCAAATGGCCGCTGTGG+CGG | - | chr5_4:11951856-11951875 | Msa0837850:CDS | 55.0% | |
TCCTCAATCTCCCCAATCGC+CGG | + | chr5_4:11951886-11951905 | None:intergenic | 55.0% | |
TTGAGGACCAATTCCGGGGT+TGG | - | chr5_4:11951899-11951918 | Msa0837850:intron | 55.0% | |
GCCCGGGTCCACAAATGAAA+TGG | + | chr5_4:11952294-11952313 | None:intergenic | 55.0% | |
CCAAAAGGCCACTAACGTCC+CGG | - | chr5_4:11952439-11952458 | Msa0837850:intron | 55.0% | |
! | AGGGCTGCTCTCTCTAAGAG+AGG | + | chr5_4:11953597-11953616 | None:intergenic | 55.0% |
CTTAGAGAGAGCAGCCCTTG+TGG | - | chr5_4:11953599-11953618 | Msa0837850:intron | 55.0% | |
TGAACTAGGCACCCTGGTTG+CGG | + | chr5_4:11953829-11953848 | None:intergenic | 55.0% | |
GGAGTTTGGAGAGGATGGGA+AGG | - | chr5_4:11954696-11954715 | Msa0837850:intron | 55.0% | |
!!! | GACGAGGGTTTTGGGGGTTT+GGG | - | chr5_4:11954832-11954851 | Msa0837850:intron | 55.0% |
GTTTGGGAGTTTGGAGGGGA+AGG | + | chr5_4:11955022-11955041 | None:intergenic | 55.0% | |
! | CTAGCCAAAGGGAGTGGGTT+AGG | + | chr5_4:11955049-11955068 | None:intergenic | 55.0% |
GTCAGCTAGCCAAAGGGAGT+GGG | + | chr5_4:11955054-11955073 | None:intergenic | 55.0% | |
AGTCAGCTAGCCAAAGGGAG+TGG | + | chr5_4:11955055-11955074 | None:intergenic | 55.0% | |
! | CAATTGCATGGCAGTGCTGG+TGG | - | chr5_4:11956102-11956121 | Msa0837850:intron | 55.0% |
TCCTGACTGCGTGGATGCAG+GGG | + | chr5_4:11952318-11952337 | None:intergenic | 60.0% | |
GTCCTGACTGCGTGGATGCA+GGG | + | chr5_4:11952319-11952338 | None:intergenic | 60.0% | |
TGTCCTGACTGCGTGGATGC+AGG | + | chr5_4:11952320-11952339 | None:intergenic | 60.0% | |
! | CCGGGACGTTAGTGGCCTTT+TGG | + | chr5_4:11952442-11952461 | None:intergenic | 60.0% |
AGATCCCACATCCACGCAGC+CGG | + | chr5_4:11952461-11952480 | None:intergenic | 60.0% | |
GCATTTGGCACGCTGCGGAA+TGG | + | chr5_4:11953364-11953383 | None:intergenic | 60.0% | |
GGTCAGTGAACTAGGCACCC+TGG | + | chr5_4:11953835-11953854 | None:intergenic | 60.0% | |
!!! | GGACGAGGGTTTTGGGGGTT+TGG | - | chr5_4:11954831-11954850 | Msa0837850:intron | 60.0% |
GAGTTTGGAGGGGAAGGGAG+GGG | + | chr5_4:11955016-11955035 | None:intergenic | 60.0% | |
GGAGTTTGGAGGGGAAGGGA+GGG | + | chr5_4:11955017-11955036 | None:intergenic | 60.0% | |
CCAGCTGAGCCCTTAAAGCG+TGG | + | chr5_4:11955899-11955918 | None:intergenic | 60.0% | |
!! | CCACGCTTTAAGGGCTCAGC+TGG | - | chr5_4:11955896-11955915 | Msa0837850:CDS | 60.0% |
!! | CAGTGCTGGTGGAGCTGAAG+TGG | - | chr5_4:11956113-11956132 | Msa0837850:five_prime_UTR | 60.0% |
GCCGGCGATTGGGGAGATTG+AGG | - | chr5_4:11951882-11951901 | Msa0837850:intron | 65.0% | |
TCCCCTGCATCCACGCAGTC+AGG | - | chr5_4:11952314-11952333 | Msa0837850:intron | 65.0% | |
CCACGGATGTCCTGACTGCG+TGG | + | chr5_4:11952327-11952346 | None:intergenic | 65.0% | |
CCACGCAGTCAGGACATCCG+TGG | - | chr5_4:11952324-11952343 | Msa0837850:intron | 65.0% | |
GATCCCACATCCACGCAGCC+GGG | + | chr5_4:11952460-11952479 | None:intergenic | 65.0% | |
!! | AGGGAGGGGAGGGCTTTGGA+GGG | + | chr5_4:11955002-11955021 | None:intergenic | 65.0% |
! | AAGGGAGGGGAGGGCTTTGG+AGG | + | chr5_4:11955003-11955022 | None:intergenic | 65.0% |
TTGGAGGGGAAGGGAGGGGA+GGG | + | chr5_4:11955012-11955031 | None:intergenic | 65.0% | |
TTTGGAGGGGAAGGGAGGGG+AGG | + | chr5_4:11955013-11955032 | None:intergenic | 65.0% | |
GGGAGTTTGGAGGGGAAGGG+AGG | + | chr5_4:11955018-11955037 | None:intergenic | 65.0% | |
AGTCACGGCTGGACAGCGGT+TGG | - | chr5_4:11955561-11955580 | Msa0837850:intron | 65.0% | |
TGTGGCGGCTTGCCGGCGAT+TGG | - | chr5_4:11951871-11951890 | Msa0837850:CDS | 70.0% | |
GTGGCGGCTTGCCGGCGATT+GGG | - | chr5_4:11951872-11951891 | Msa0837850:CDS | 70.0% | |
TGGCGGCTTGCCGGCGATTG+GGG | - | chr5_4:11951873-11951892 | Msa0837850:CDS | 70.0% | |
TGCGTGGATGCAGGGGAGCC+CGG | + | chr5_4:11952311-11952330 | None:intergenic | 70.0% | |
CCACGCAGCCGGGACGTTAG+TGG | + | chr5_4:11952450-11952469 | None:intergenic | 70.0% | |
CCACTAACGTCCCGGCTGCG+TGG | - | chr5_4:11952447-11952466 | Msa0837850:intron | 70.0% | |
ACGTCCCGGCTGCGTGGATG+TGG | - | chr5_4:11952453-11952472 | Msa0837850:intron | 70.0% | |
CGTCCCGGCTGCGTGGATGT+GGG | - | chr5_4:11952454-11952473 | Msa0837850:intron | 70.0% | |
GGGAAGGGAGGGGAGGGCTT+TGG | + | chr5_4:11955006-11955025 | None:intergenic | 70.0% | |
TGGCCGCTGTGGCGGCTTGC+CGG | - | chr5_4:11951864-11951883 | Msa0837850:CDS | 75.0% | |
TCGCCGGCAAGCCGCCACAG+CGG | + | chr5_4:11951870-11951889 | None:intergenic | 75.0% | |
GCGTGGATGCAGGGGAGCCC+GGG | + | chr5_4:11952310-11952329 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 11951499 | 11956287 | 11951499 | ID=Msa0837850;Name=Msa0837850 |
chr5_4 | mRNA | 11951499 | 11956287 | 11951499 | ID=Msa0837850-mRNA-1;Parent=Msa0837850;Name=Msa0837850-mRNA-1;_AED=0.19;_eAED=0.19;_QI=282|1|1|1|0.85|0.75|8|277|233 |
chr5_4 | exon | 11951499 | 11951895 | 11951499 | ID=Msa0837850-mRNA-1:exon:5290;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11952009 | 11952075 | 11952009 | ID=Msa0837850-mRNA-1:exon:5289;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11952184 | 11952240 | 11952184 | ID=Msa0837850-mRNA-1:exon:5288;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11952341 | 11952417 | 11952341 | ID=Msa0837850-mRNA-1:exon:5287;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11954849 | 11954908 | 11954849 | ID=Msa0837850-mRNA-1:exon:5286;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11955088 | 11955219 | 11955088 | ID=Msa0837850-mRNA-1:exon:5285;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11955735 | 11956024 | 11955735 | ID=Msa0837850-mRNA-1:exon:5284;Parent=Msa0837850-mRNA-1 |
chr5_4 | exon | 11956107 | 11956287 | 11956107 | ID=Msa0837850-mRNA-1:exon:5283;Parent=Msa0837850-mRNA-1 |
chr5_4 | five_prime_UTR | 11956107 | 11956287 | 11956107 | ID=Msa0837850-mRNA-1:five_prime_utr;Parent=Msa0837850-mRNA-1 |
chr5_4 | five_prime_UTR | 11955924 | 11956024 | 11955924 | ID=Msa0837850-mRNA-1:five_prime_utr;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11955735 | 11955923 | 11955735 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11955088 | 11955219 | 11955088 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11954849 | 11954908 | 11954849 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11952341 | 11952417 | 11952341 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11952184 | 11952240 | 11952184 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11952009 | 11952075 | 11952009 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | CDS | 11951776 | 11951895 | 11951776 | ID=Msa0837850-mRNA-1:cds;Parent=Msa0837850-mRNA-1 |
chr5_4 | three_prime_UTR | 11951499 | 11951775 | 11951499 | ID=Msa0837850-mRNA-1:three_prime_utr;Parent=Msa0837850-mRNA-1 |
Gene Sequence |
Protein sequence |