Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839490 | KEH27642.1 | 95.000 | 60 | 3 | 0 | 18 | 77 | 6 | 65 | 1.51e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839490 | A0A072UDD9 | 95.000 | 60 | 3 | 0 | 18 | 77 | 6 | 65 | 7.20e-32 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801110 | Msa0839490 | 0.876866 | 9.929156e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839490 | MtrunA17_Chr5g0406991 | 50.575 | 87 | 23 | 1 | 107 | 173 | 237 | 323 | 9.32e-15 | 71.6 |
| Msa0839490 | MtrunA17_Chr5g0407861 | 77.143 | 35 | 8 | 0 | 114 | 148 | 1 | 35 | 2.79e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTAGATTTCAACTAATTT+TGG | 0.141021 | 5_4:-14529386 | None:intergenic |
| GCTTTGCTTTATCCTATTTA+TGG | 0.157298 | 5_4:+14527161 | Msa0839490:CDS |
| GCCTGTTATTTCTCTGCTTA+TGG | 0.158116 | 5_4:+14527387 | Msa0839490:CDS |
| CAATCATGAAAAGCCGAAAA+TGG | 0.236878 | 5_4:-14526171 | None:intergenic |
| AGTTCTCATTCACCATAAAT+AGG | 0.297088 | 5_4:-14527173 | None:intergenic |
| GGGCTACCGTTTCAAGAATC+TGG | 0.301797 | 5_4:+14526145 | Msa0839490:CDS |
| AGTTGAAATCTAGTTGATAT+TGG | 0.314611 | 5_4:+14529394 | Msa0839490:three_prime_UTR |
| ACCATCCCGGCCAGTAGAAC+TGG | 0.326851 | 5_4:+14525777 | Msa0839490:intron |
| TTCTTGTTGCCTGTGTTCTA+TGG | 0.328018 | 5_4:-14525590 | None:intergenic |
| TATTTCTCTGCTTATGGATA+AGG | 0.336392 | 5_4:+14527393 | Msa0839490:CDS |
| TACTGTGTCCTTGATTTCTA+AGG | 0.355069 | 5_4:-14525908 | None:intergenic |
| GACAAATAAATCGGCTGAAA+TGG | 0.357707 | 5_4:-14529300 | None:intergenic |
| ATCAAGAAAATGTCGAGCTT+TGG | 0.361421 | 5_4:+14526947 | Msa0839490:CDS |
| AGTTAACCATCCTAACATTT+CGG | 0.363419 | 5_4:-14529363 | None:intergenic |
| TTCCGGTTTGCAAGTGCATT+TGG | 0.365624 | 5_4:+14527129 | Msa0839490:intron |
| TTGTATTAGACCGAAATGTT+AGG | 0.393830 | 5_4:+14529353 | Msa0839490:three_prime_UTR |
| TTGCAAGTGCATTTGGTGAC+CGG | 0.397116 | 5_4:+14527136 | Msa0839490:intron |
| TTGAACAGGATCTGTTCTAT+AGG | 0.397187 | 5_4:-14525938 | None:intergenic |
| GGGGAAGAAACAAGAAGCTT+TGG | 0.399238 | 5_4:+14529069 | Msa0839490:intron |
| GGCTACCGTTTCAAGAATCT+GGG | 0.401576 | 5_4:+14526146 | Msa0839490:CDS |
| CAGCTGTAGATGATCGTTCT+CGG | 0.403248 | 5_4:-14525801 | None:intergenic |
| AAGCACGACCTTACTTGAAC+AGG | 0.416803 | 5_4:-14525952 | None:intergenic |
| TATCCCTATCGCCAATGAAT+AGG | 0.431398 | 5_4:-14529220 | None:intergenic |
| TAGGGATAGGTCAGTCTGAC+AGG | 0.434663 | 5_4:+14529235 | Msa0839490:three_prime_UTR |
| TGTGATCAGAGCGTGATTAA+CGG | 0.435008 | 5_4:-14525848 | None:intergenic |
| TCCATAAGCAGAGAAATAAC+AGG | 0.436213 | 5_4:-14527388 | None:intergenic |
| GCAGAGAAATAACAGGCATT+AGG | 0.442471 | 5_4:-14527381 | None:intergenic |
| CAGCTAAACAAAAGCAGCTC+TGG | 0.448952 | 5_4:+14526120 | Msa0839490:intron |
| TCCTGTCTCCTTAGAAATCA+AGG | 0.461663 | 5_4:+14525900 | Msa0839490:CDS |
| TGCAAGTGCATTTGGTGACC+GGG | 0.463131 | 5_4:+14527137 | Msa0839490:intron |
| TCAAAGTGACGCCTATTCAT+TGG | 0.465200 | 5_4:+14529209 | Msa0839490:three_prime_UTR |
| TTGCCATCAGACAAATAAAT+CGG | 0.474041 | 5_4:-14529309 | None:intergenic |
| CAGCCGATTTATTTGTCTGA+TGG | 0.475626 | 5_4:+14529306 | Msa0839490:three_prime_UTR |
| GGGAAGAAACAAGAAGCTTT+GGG | 0.478584 | 5_4:+14529070 | Msa0839490:CDS |
| CTAAACAAAAGCAGCTCTGG+TGG | 0.482668 | 5_4:+14526123 | Msa0839490:CDS |
| GACTTAGTTAAAACAAAAGA+TGG | 0.488429 | 5_4:+14526973 | Msa0839490:CDS |
| AATCATGAAAAGCCGAAAAT+GGG | 0.488445 | 5_4:-14526170 | None:intergenic |
| TCCTTGATTTCTAAGGAGAC+AGG | 0.494432 | 5_4:-14525901 | None:intergenic |
| TCAGAGCGTGATTAACGGCC+AGG | 0.504563 | 5_4:-14525843 | None:intergenic |
| GCTCAATACAGCTTAACTGT+TGG | 0.516772 | 5_4:+14527009 | Msa0839490:CDS |
| ACGCCTATTCATTGGCGATA+GGG | 0.520674 | 5_4:+14529217 | Msa0839490:three_prime_UTR |
| TATTCATTGGCGATAGGGAT+AGG | 0.528495 | 5_4:+14529222 | Msa0839490:three_prime_UTR |
| TGGGCCCCAGATTCTTGAAA+CGG | 0.547553 | 5_4:-14526151 | None:intergenic |
| AGATGATGCGCACATCATCC+TGG | 0.553802 | 5_4:+14525825 | Msa0839490:CDS |
| TCTTGCTAATGTGTTTCTAG+AGG | 0.554418 | 5_4:+14529130 | Msa0839490:exon |
| AGGAGACAGGAACATACGTC+TGG | 0.564339 | 5_4:-14525888 | None:intergenic |
| CCATCCCGGCCAGTAGAACT+GGG | 0.565548 | 5_4:+14525778 | Msa0839490:intron |
| TAAACAAAAGCAGCTCTGGT+GGG | 0.572757 | 5_4:+14526124 | Msa0839490:CDS |
| AAACAAAAGCAGCTCTGGTG+GGG | 0.582133 | 5_4:+14526125 | Msa0839490:CDS |
| GTAATGATGCAGAAAGTGCT+AGG | 0.584565 | 5_4:+14529092 | Msa0839490:CDS |
| ACGCTCTGATCACACGGTCA+TGG | 0.593836 | 5_4:+14525857 | Msa0839490:CDS |
| GACGCCTATTCATTGGCGAT+AGG | 0.599124 | 5_4:+14529216 | Msa0839490:three_prime_UTR |
| TTCTTGATCGAAATCTACCA+TGG | 0.602048 | 5_4:-14526932 | None:intergenic |
| ATTAGACCGAAATGTTAGGA+TGG | 0.602572 | 5_4:+14529357 | Msa0839490:three_prime_UTR |
| CAAGTGCATTTGGTGACCGG+GGG | 0.603224 | 5_4:+14527139 | Msa0839490:intron |
| ACTCTCGACAAAATAACATA+CGG | 0.603416 | 5_4:+14529157 | Msa0839490:three_prime_UTR |
| AATACAGCTTAACTGTTGGA+AGG | 0.605833 | 5_4:+14527013 | Msa0839490:CDS |
| AGACAGGAACATACGTCTGG+TGG | 0.605959 | 5_4:-14525885 | None:intergenic |
| GCAAGTGCATTTGGTGACCG+GGG | 0.606129 | 5_4:+14527138 | Msa0839490:intron |
| TTAATCACGCTCTGATCACA+CGG | 0.616234 | 5_4:+14525851 | Msa0839490:CDS |
| GTTCACAAAGATGACATCGT+AGG | 0.619558 | 5_4:-14525613 | None:intergenic |
| AGGGATAGGTCAGTCTGACA+GGG | 0.622393 | 5_4:+14529236 | Msa0839490:three_prime_UTR |
| TTATTTGTCTGATGGCAACA+CGG | 0.652389 | 5_4:+14529314 | Msa0839490:three_prime_UTR |
| ATAGGATAAAGCAAAGCCCC+CGG | 0.655923 | 5_4:-14527155 | None:intergenic |
| GGGAATGGACCATAGAACAC+AGG | 0.683602 | 5_4:+14525581 | None:intergenic |
| GATGTCATCTTTGTGAACCA+AGG | 0.689567 | 5_4:+14525618 | Msa0839490:CDS |
| GCTACCGTTTCAAGAATCTG+GGG | 0.699710 | 5_4:+14526147 | Msa0839490:CDS |
| GGGATAGGTCAGTCTGACAG+GGG | 0.723884 | 5_4:+14529237 | Msa0839490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTAAGGATATATA+GGG | + | chr5_4:14528451-14528470 | Msa0839490:intron | 10.0% |
| !!! | ATAGAAAATAATTTTGAGAA+GGG | - | chr5_4:14525660-14525679 | None:intergenic | 15.0% |
| !! | CAAAAAACATGATAAAAAAA+GGG | + | chr5_4:14525728-14525747 | Msa0839490:intron | 15.0% |
| !!! | TGCATTTATTTAAGTTTTAA+AGG | + | chr5_4:14527233-14527252 | Msa0839490:intron | 15.0% |
| !!! | GCATTTATTTAAGTTTTAAA+GGG | + | chr5_4:14527234-14527253 | Msa0839490:intron | 15.0% |
| !! | ATTTAAAGAGAATGAAATTA+AGG | - | chr5_4:14527293-14527312 | None:intergenic | 15.0% |
| !!! | ATATTAAAATTTTGTGAATC+AGG | + | chr5_4:14527354-14527373 | Msa0839490:intron | 15.0% |
| !!! | TGTATATATTTTTCTTGAAA+AGG | + | chr5_4:14527834-14527853 | Msa0839490:intron | 15.0% |
| !!! | ATACTGTAAGTATTTTATTA+AGG | + | chr5_4:14528441-14528460 | Msa0839490:intron | 15.0% |
| !!! | GTATTTTATTAAGGATATAT+AGG | + | chr5_4:14528450-14528469 | Msa0839490:intron | 15.0% |
| !! | AATAATTATCTAATTCTTTC+CGG | + | chr5_4:14529005-14529024 | Msa0839490:intron | 15.0% |
| !!! | CATAGAAAATAATTTTGAGA+AGG | - | chr5_4:14525661-14525680 | None:intergenic | 20.0% |
| !!! | CTTCTCAAAATTATTTTCTA+TGG | + | chr5_4:14525659-14525678 | Msa0839490:intron | 20.0% |
| !! | TAAAAATGTGCAATGAATAA+CGG | + | chr5_4:14525690-14525709 | Msa0839490:intron | 20.0% |
| !! | GCAAAAAACATGATAAAAAA+AGG | + | chr5_4:14525727-14525746 | Msa0839490:intron | 20.0% |
| !! | CAATGAATTTGACAAAATAA+CGG | - | chr5_4:14526379-14526398 | None:intergenic | 20.0% |
| !! | AGAGTTATAGTTGTTTAATT+AGG | - | chr5_4:14526545-14526564 | None:intergenic | 20.0% |
| !! | TCTATTGTAACAAAATTTCA+TGG | - | chr5_4:14526579-14526598 | None:intergenic | 20.0% |
| !! | TATCACTTGATTAAAAATCA+TGG | - | chr5_4:14527072-14527091 | None:intergenic | 20.0% |
| !!! | TGATTTTTAATCAAGTGATA+TGG | + | chr5_4:14527072-14527091 | Msa0839490:intron | 20.0% |
| !!! | TACAGTAAGTATTTTATCAT+AGG | + | chr5_4:14527654-14527673 | Msa0839490:intron | 20.0% |
| !!! | ACAGTAAGTATTTTATCATA+GGG | + | chr5_4:14527655-14527674 | Msa0839490:intron | 20.0% |
| !!! | TTTTCTTGAAAAGGTTAAAT+TGG | + | chr5_4:14527843-14527862 | Msa0839490:intron | 20.0% |
| !! | AAATACTTACAGTATTAACA+AGG | - | chr5_4:14528436-14528455 | None:intergenic | 20.0% |
| !!! | CATAGTTTAGTTTATGAATT+GGG | - | chr5_4:14528739-14528758 | None:intergenic | 20.0% |
| !! | TTGTGTAAAATTAGATTAGT+AGG | + | chr5_4:14528982-14529001 | Msa0839490:intron | 20.0% |
| !! | ATAATTATCTAATTCTTTCC+GGG | + | chr5_4:14529006-14529025 | Msa0839490:intron | 20.0% |
| !!! | AACTAGATTTCAACTAATTT+TGG | - | chr5_4:14529389-14529408 | None:intergenic | 20.0% |
| !!! | GAATGATAATGTTTTTACCT+TGG | - | chr5_4:14525638-14525657 | None:intergenic | 25.0% |
| ! | AAAAATGTGCAATGAATAAC+GGG | + | chr5_4:14525691-14525710 | Msa0839490:intron | 25.0% |
| !! | TTGCATTGTGCTTTTATATT+TGG | + | chr5_4:14526226-14526245 | Msa0839490:intron | 25.0% |
| !! | GATTCAAGTTATTGTAATGA+AGG | + | chr5_4:14526400-14526419 | Msa0839490:intron | 25.0% |
| ! | TTGTCATTATAATTGATGGA+TGG | - | chr5_4:14526508-14526527 | None:intergenic | 25.0% |
| ! | GCTATTGTCATTATAATTGA+TGG | - | chr5_4:14526512-14526531 | None:intergenic | 25.0% |
| !! | AAATGCAGATTTGTATTTTG+TGG | - | chr5_4:14526618-14526637 | None:intergenic | 25.0% |
| ! | ATAATTCATATTGTTGCAGT+TGG | - | chr5_4:14526703-14526722 | None:intergenic | 25.0% |
| ! | ATGCACTATAAACAGTTATT+AGG | - | chr5_4:14526839-14526858 | None:intergenic | 25.0% |
| ! | GACTTAGTTAAAACAAAAGA+TGG | + | chr5_4:14526973-14526992 | Msa0839490:CDS | 25.0% |
| ! | ATATTTATCTTTGTCCTTTC+CGG | + | chr5_4:14527112-14527131 | Msa0839490:intron | 25.0% |
| !!! | AAGTTTTAAAGGGATTTATG+AGG | + | chr5_4:14527244-14527263 | Msa0839490:intron | 25.0% |
| ! | TAAAGACTTAACACAAAAGA+CGG | + | chr5_4:14528202-14528221 | Msa0839490:intron | 25.0% |
| !! | GCATAGTTTAGTTTATGAAT+TGG | - | chr5_4:14528740-14528759 | None:intergenic | 25.0% |
| !! | GCAAGTTTAAAATTAGAACA+GGG | - | chr5_4:14528955-14528974 | None:intergenic | 25.0% |
| !! | AGCAAGTTTAAAATTAGAAC+AGG | - | chr5_4:14528956-14528975 | None:intergenic | 25.0% |
| ! | TAATTATCTAATTCTTTCCG+GGG | + | chr5_4:14529007-14529026 | Msa0839490:intron | 25.0% |
| !! | AGTTGAAATCTAGTTGATAT+TGG | + | chr5_4:14529394-14529413 | Msa0839490:three_prime_UTR | 25.0% |
| ! | TTTTCTGTTATTAACCGATG+TGG | + | chr5_4:14526011-14526030 | Msa0839490:intron | 30.0% |
| TTTCTGTTATTAACCGATGT+GGG | + | chr5_4:14526012-14526031 | Msa0839490:intron | 30.0% | |
| TTCTATATCTGAACTCCAAA+GGG | - | chr5_4:14526067-14526086 | None:intergenic | 30.0% | |
| ATTCTATATCTGAACTCCAA+AGG | - | chr5_4:14526068-14526087 | None:intergenic | 30.0% | |
| AATCATGAAAAGCCGAAAAT+GGG | - | chr5_4:14526173-14526192 | None:intergenic | 30.0% | |
| ! | CATTGTGCTTTTATATTTGG+TGG | + | chr5_4:14526229-14526248 | Msa0839490:intron | 30.0% |
| TGAATTTGACAAAATAACGG+TGG | - | chr5_4:14526376-14526395 | None:intergenic | 30.0% | |
| ! | CAGATTTGTATTTTGTGGTA+TGG | - | chr5_4:14526613-14526632 | None:intergenic | 30.0% |
| ATCTGCATTTAGAAGTCATT+TGG | + | chr5_4:14526628-14526647 | Msa0839490:intron | 30.0% | |
| TATCTCGTTTCATAGTTCAT+TGG | + | chr5_4:14526789-14526808 | Msa0839490:intron | 30.0% | |
| GCTTTGCTTTATCCTATTTA+TGG | + | chr5_4:14527161-14527180 | Msa0839490:CDS | 30.0% | |
| AGTTCTCATTCACCATAAAT+AGG | - | chr5_4:14527176-14527195 | None:intergenic | 30.0% | |
| TATTTCTCTGCTTATGGATA+AGG | + | chr5_4:14527393-14527412 | Msa0839490:CDS | 30.0% | |
| !! | AATATTTTTGAGAAGAGACG+AGG | + | chr5_4:14527452-14527471 | Msa0839490:intron | 30.0% |
| TTAGACAAAGATTGTGTTGA+TGG | - | chr5_4:14527604-14527623 | None:intergenic | 30.0% | |
| TCAACACAATCTTTGTCTAA+AGG | + | chr5_4:14527604-14527623 | Msa0839490:intron | 30.0% | |
| AAAAGTTGAGAGATAAGAGT+GGG | - | chr5_4:14527691-14527710 | None:intergenic | 30.0% | |
| AAAAAGTTGAGAGATAAGAG+TGG | - | chr5_4:14527692-14527711 | None:intergenic | 30.0% | |
| CCAATGAAAGATGAAACAAA+TGG | - | chr5_4:14527894-14527913 | None:intergenic | 30.0% | |
| CCATTTGTTTCATCTTTCAT+TGG | + | chr5_4:14527891-14527910 | Msa0839490:intron | 30.0% | |
| TTTCATCTTTCATTGGAACT+TGG | + | chr5_4:14527898-14527917 | Msa0839490:intron | 30.0% | |
| TGCATTGTTTCATCTTTCAT+TGG | + | chr5_4:14528023-14528042 | Msa0839490:intron | 30.0% | |
| AAAGAATCCTGTTGAAGATA+AGG | - | chr5_4:14528133-14528152 | None:intergenic | 30.0% | |
| !! | GGAGATTTTGATCAAGAAAA+TGG | + | chr5_4:14528170-14528189 | Msa0839490:intron | 30.0% |
| ! | TTTTGATCAAGAAAATGGTG+AGG | + | chr5_4:14528175-14528194 | Msa0839490:intron | 30.0% |
| ! | TTGCCTCGAATTTTTATTCA+AGG | + | chr5_4:14528289-14528308 | Msa0839490:intron | 30.0% |
| ! | TGCCTCGAATTTTTATTCAA+GGG | + | chr5_4:14528290-14528309 | Msa0839490:intron | 30.0% |
| ATCCCTTGAATAAAAATTCG+AGG | - | chr5_4:14528295-14528314 | None:intergenic | 30.0% | |
| TTTATTCAAGGGATCTCAAT+TGG | + | chr5_4:14528301-14528320 | Msa0839490:intron | 30.0% | |
| GTACTTATCCATGTTCTTTA+CGG | + | chr5_4:14528340-14528359 | Msa0839490:intron | 30.0% | |
| TACTTATCCATGTTCTTTAC+GGG | + | chr5_4:14528341-14528360 | Msa0839490:intron | 30.0% | |
| !!! | ATTTTTTCCCGTAAAGAACA+TGG | - | chr5_4:14528351-14528370 | None:intergenic | 30.0% |
| TTAACAAGGCATGAATTTAC+AGG | - | chr5_4:14528422-14528441 | None:intergenic | 30.0% | |
| CCTTCACACATTTATTTGAA+AGG | - | chr5_4:14528658-14528677 | None:intergenic | 30.0% | |
| CCTTTCAAATAAATGTGTGA+AGG | + | chr5_4:14528655-14528674 | Msa0839490:intron | 30.0% | |
| ACACGGTATTCTTTAGTAAA+AGG | - | chr5_4:14528844-14528863 | None:intergenic | 30.0% | |
| !!! | TACGCTAGTTTTTGGATTTT+TGG | + | chr5_4:14528884-14528903 | Msa0839490:intron | 30.0% |
| !! | TTTTCTAAAGGAAACCTTTG+TGG | + | chr5_4:14529035-14529054 | Msa0839490:intron | 30.0% |
| ! | TTTCTAAAGGAAACCTTTGT+GGG | + | chr5_4:14529036-14529055 | Msa0839490:intron | 30.0% |
| ACTCTCGACAAAATAACATA+CGG | + | chr5_4:14529157-14529176 | Msa0839490:three_prime_UTR | 30.0% | |
| TTGCCATCAGACAAATAAAT+CGG | - | chr5_4:14529312-14529331 | None:intergenic | 30.0% | |
| TTGTATTAGACCGAAATGTT+AGG | + | chr5_4:14529353-14529372 | Msa0839490:three_prime_UTR | 30.0% | |
| AGTTAACCATCCTAACATTT+CGG | - | chr5_4:14529366-14529385 | None:intergenic | 30.0% | |
| TACTGTGTCCTTGATTTCTA+AGG | - | chr5_4:14525911-14525930 | None:intergenic | 35.0% | |
| TTGAACAGGATCTGTTCTAT+AGG | - | chr5_4:14525941-14525960 | None:intergenic | 35.0% | |
| CAATCATGAAAAGCCGAAAA+TGG | - | chr5_4:14526174-14526193 | None:intergenic | 35.0% | |
| ! | CATTTTCGGCTTTTCATGAT+TGG | + | chr5_4:14526172-14526191 | Msa0839490:CDS | 35.0% |
| GTTTGAATCGACAATGAACT+AGG | + | chr5_4:14526282-14526301 | Msa0839490:intron | 35.0% | |
| CAATGAACTAGGCAAAATCA+CGG | + | chr5_4:14526293-14526312 | Msa0839490:intron | 35.0% | |
| ! | AGCTTTTGCCAAAATCACAA+TGG | - | chr5_4:14526323-14526342 | None:intergenic | 35.0% |
| GCATACACAAAGTATGAATG+CGG | - | chr5_4:14526657-14526676 | None:intergenic | 35.0% | |
| ! | TCTTTTGTACTCTATAGCCA+TGG | + | chr5_4:14526915-14526934 | Msa0839490:CDS | 35.0% |
| TTCTTGATCGAAATCTACCA+TGG | - | chr5_4:14526935-14526954 | None:intergenic | 35.0% | |
| ATCAAGAAAATGTCGAGCTT+TGG | + | chr5_4:14526947-14526966 | Msa0839490:CDS | 35.0% | |
| AATACAGCTTAACTGTTGGA+AGG | + | chr5_4:14527013-14527032 | Msa0839490:CDS | 35.0% | |
| TCCATAAGCAGAGAAATAAC+AGG | - | chr5_4:14527391-14527410 | None:intergenic | 35.0% | |
| ATGAAATTGCTTTGCACTTG+GGG | - | chr5_4:14527487-14527506 | None:intergenic | 35.0% | |
| GATGAAATTGCTTTGCACTT+GGG | - | chr5_4:14527488-14527507 | None:intergenic | 35.0% | |
| AGATGAAATTGCTTTGCACT+TGG | - | chr5_4:14527489-14527508 | None:intergenic | 35.0% | |
| ! | GTTGATGGAATTACGAAACA+TGG | - | chr5_4:14527589-14527608 | None:intergenic | 35.0% |
| CTTTGTCTAAAGGAGTAACT+AGG | + | chr5_4:14527614-14527633 | Msa0839490:intron | 35.0% | |
| ACTCAGTGAAATGTGATGAT+TGG | + | chr5_4:14527731-14527750 | Msa0839490:intron | 35.0% | |
| ! | GTTTGAAGTCTTGAGATGTT+TGG | + | chr5_4:14527761-14527780 | Msa0839490:intron | 35.0% |
| ! | TCTTTTGTATGCTATAGCCA+TGG | + | chr5_4:14528148-14528167 | Msa0839490:intron | 35.0% |
| ! | CTTTTGTATGCTATAGCCAT+GGG | + | chr5_4:14528149-14528168 | Msa0839490:intron | 35.0% |
| TTCTTGATCAAAATCTCCCA+TGG | - | chr5_4:14528168-14528187 | None:intergenic | 35.0% | |
| AAGGCATGAATTTACAGGAA+GGG | - | chr5_4:14528417-14528436 | None:intergenic | 35.0% | |
| AGAAAGAGACTAAGATACAG+AGG | - | chr5_4:14528535-14528554 | None:intergenic | 35.0% | |
| ACCTCTCCTTGTAAAAATCA+CGG | + | chr5_4:14528782-14528801 | Msa0839490:intron | 35.0% | |
| ! | TCCTTTAGAAAAAACATCCC+CGG | - | chr5_4:14529027-14529046 | None:intergenic | 35.0% |
| !! | TCTTGCTAATGTGTTTCTAG+AGG | + | chr5_4:14529130-14529149 | Msa0839490:exon | 35.0% |
| GACAAATAAATCGGCTGAAA+TGG | - | chr5_4:14529303-14529322 | None:intergenic | 35.0% | |
| TTATTTGTCTGATGGCAACA+CGG | + | chr5_4:14529314-14529333 | Msa0839490:three_prime_UTR | 35.0% | |
| ATTAGACCGAAATGTTAGGA+TGG | + | chr5_4:14529357-14529376 | Msa0839490:three_prime_UTR | 35.0% | |
| TTCTTGTTGCCTGTGTTCTA+TGG | - | chr5_4:14525593-14525612 | None:intergenic | 40.0% | |
| GTTCACAAAGATGACATCGT+AGG | - | chr5_4:14525616-14525635 | None:intergenic | 40.0% | |
| GATGTCATCTTTGTGAACCA+AGG | + | chr5_4:14525618-14525637 | Msa0839490:CDS | 40.0% | |
| !! | TGCAATGAATAACGGGTTTG+AGG | + | chr5_4:14525698-14525717 | Msa0839490:intron | 40.0% |
| TGTGATCAGAGCGTGATTAA+CGG | - | chr5_4:14525851-14525870 | None:intergenic | 40.0% | |
| TTAATCACGCTCTGATCACA+CGG | + | chr5_4:14525851-14525870 | Msa0839490:CDS | 40.0% | |
| TCCTGTCTCCTTAGAAATCA+AGG | + | chr5_4:14525900-14525919 | Msa0839490:CDS | 40.0% | |
| ! | TCCTTGATTTCTAAGGAGAC+AGG | - | chr5_4:14525904-14525923 | None:intergenic | 40.0% |
| GAACAGATCCTGTTCAAGTA+AGG | + | chr5_4:14525944-14525963 | Msa0839490:intron | 40.0% | |
| AAAGGGAGAGTCACAACAAA+AGG | - | chr5_4:14526050-14526069 | None:intergenic | 40.0% | |
| !! | TTTTGTTGTGACTCTCCCTT+TGG | + | chr5_4:14526049-14526068 | Msa0839490:intron | 40.0% |
| ! | TAAACAAAAGCAGCTCTGGT+GGG | + | chr5_4:14526124-14526143 | Msa0839490:CDS | 40.0% |
| GTACTCTTCAATGCACAAGA+AGG | - | chr5_4:14526769-14526788 | None:intergenic | 40.0% | |
| ! | TTATCTTAGTGTACTGACGC+TGG | - | chr5_4:14526872-14526891 | None:intergenic | 40.0% |
| GCTCAATACAGCTTAACTGT+TGG | + | chr5_4:14527009-14527028 | Msa0839490:CDS | 40.0% | |
| GCAGAGAAATAACAGGCATT+AGG | - | chr5_4:14527384-14527403 | None:intergenic | 40.0% | |
| !! | GCCTGTTATTTCTCTGCTTA+TGG | + | chr5_4:14527387-14527406 | Msa0839490:CDS | 40.0% |
| TGAAATTGCTTTGCACTTGG+GGG | - | chr5_4:14527486-14527505 | None:intergenic | 40.0% | |
| GAATTACGAAACATGGATCC+AGG | - | chr5_4:14527582-14527601 | None:intergenic | 40.0% | |
| CTCTGTATGCTTAAGCATTC+TGG | + | chr5_4:14527803-14527822 | Msa0839490:intron | 40.0% | |
| TATGCTTAAGCATTCTGGTG+CGG | + | chr5_4:14527808-14527827 | Msa0839490:intron | 40.0% | |
| GATGAAACAATGCATGCACA+TGG | - | chr5_4:14528017-14528036 | None:intergenic | 40.0% | |
| GCTTTACCTTAGTGTACTGA+CGG | - | chr5_4:14528108-14528127 | None:intergenic | 40.0% | |
| AAAGCCTCCTTATCTTCAAC+AGG | + | chr5_4:14528123-14528142 | Msa0839490:intron | 40.0% | |
| GAATCCTGTTGAAGATAAGG+AGG | - | chr5_4:14528130-14528149 | None:intergenic | 40.0% | |
| TAGTGTGCAGTAAGAGACTT+CGG | - | chr5_4:14528383-14528402 | None:intergenic | 40.0% | |
| CAAGGCATGAATTTACAGGA+AGG | - | chr5_4:14528418-14528437 | None:intergenic | 40.0% | |
| AAATGTGTGAAGGAGTGAAC+AGG | + | chr5_4:14528665-14528684 | Msa0839490:intron | 40.0% | |
| GTGAAACATGTTGTGAGAAC+AGG | + | chr5_4:14528687-14528706 | Msa0839490:intron | 40.0% | |
| GTTTATGAATTGGGCGATGT+GGG | - | chr5_4:14528730-14528749 | None:intergenic | 40.0% | |
| AGTTTATGAATTGGGCGATG+TGG | - | chr5_4:14528731-14528750 | None:intergenic | 40.0% | |
| CTATGCAGCTCGCATATAAA+AGG | + | chr5_4:14528754-14528773 | Msa0839490:intron | 40.0% | |
| ! | TCCGTGATTTTTACAAGGAG+AGG | - | chr5_4:14528786-14528805 | None:intergenic | 40.0% |
| TTCGCTATGTGATCATCACA+CGG | - | chr5_4:14528810-14528829 | None:intergenic | 40.0% | |
| !! | TTTTGGAAGAGTCCTCTTCA+TGG | + | chr5_4:14528901-14528920 | Msa0839490:intron | 40.0% |
| !!! | TCCGGGGATGTTTTTTCTAA+AGG | + | chr5_4:14529023-14529042 | Msa0839490:intron | 40.0% |
| GGGAAGAAACAAGAAGCTTT+GGG | + | chr5_4:14529070-14529089 | Msa0839490:CDS | 40.0% | |
| !! | GTAATGATGCAGAAAGTGCT+AGG | + | chr5_4:14529092-14529111 | Msa0839490:CDS | 40.0% |
| TCAAAGTGACGCCTATTCAT+TGG | + | chr5_4:14529209-14529228 | Msa0839490:three_prime_UTR | 40.0% | |
| TATCCCTATCGCCAATGAAT+AGG | - | chr5_4:14529223-14529242 | None:intergenic | 40.0% | |
| TATTCATTGGCGATAGGGAT+AGG | + | chr5_4:14529222-14529241 | Msa0839490:three_prime_UTR | 40.0% | |
| ! | CAGCCGATTTATTTGTCTGA+TGG | + | chr5_4:14529306-14529325 | Msa0839490:three_prime_UTR | 40.0% |
| CAGCTGTAGATGATCGTTCT+CGG | - | chr5_4:14525804-14525823 | None:intergenic | 45.0% | |
| AAGCACGACCTTACTTGAAC+AGG | - | chr5_4:14525955-14525974 | None:intergenic | 45.0% | |
| GCATGAAGTTAGTCCCACAT+CGG | - | chr5_4:14526028-14526047 | None:intergenic | 45.0% | |
| CAGCTAAACAAAAGCAGCTC+TGG | + | chr5_4:14526120-14526139 | Msa0839490:intron | 45.0% | |
| ! | CTAAACAAAAGCAGCTCTGG+TGG | + | chr5_4:14526123-14526142 | Msa0839490:CDS | 45.0% |
| ! | AAACAAAAGCAGCTCTGGTG+GGG | + | chr5_4:14526125-14526144 | Msa0839490:CDS | 45.0% |
| GGCTACCGTTTCAAGAATCT+GGG | + | chr5_4:14526146-14526165 | Msa0839490:CDS | 45.0% | |
| GCTACCGTTTCAAGAATCTG+GGG | + | chr5_4:14526147-14526166 | Msa0839490:CDS | 45.0% | |
| !! | AAGAATCTGGGGCCCATTTT+CGG | + | chr5_4:14526158-14526177 | Msa0839490:CDS | 45.0% |
| ! | ACGGCAAGCCATTGTGATTT+TGG | + | chr5_4:14526312-14526331 | Msa0839490:intron | 45.0% |
| GTGGCAACATGATGTTGTTG+AGG | - | chr5_4:14526357-14526376 | None:intergenic | 45.0% | |
| AATGCACTTGCAAACCGGAA+AGG | - | chr5_4:14527129-14527148 | None:intergenic | 45.0% | |
| ! | TTCCGGTTTGCAAGTGCATT+TGG | + | chr5_4:14527129-14527148 | Msa0839490:intron | 45.0% |
| CACCAAATGCACTTGCAAAC+CGG | - | chr5_4:14527134-14527153 | None:intergenic | 45.0% | |
| ! | TTGCAAGTGCATTTGGTGAC+CGG | + | chr5_4:14527136-14527155 | Msa0839490:intron | 45.0% |
| ATAGGATAAAGCAAAGCCCC+CGG | - | chr5_4:14527158-14527177 | None:intergenic | 45.0% | |
| AACGAATGTTGCAGACTTGC+AGG | + | chr5_4:14527521-14527540 | Msa0839490:intron | 45.0% | |
| CAGGTGACTGAGTTGTGTAA+AGG | + | chr5_4:14527540-14527559 | Msa0839490:intron | 45.0% | |
| AGTCTTGAGATGTTTGGCAG+TGG | + | chr5_4:14527767-14527786 | Msa0839490:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_4:14527967-14527986 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_4:14527968-14527987 | None:intergenic | 45.0% |
| ATGCATGCACATGGAGAGTA+AGG | - | chr5_4:14528008-14528027 | None:intergenic | 45.0% | |
| ! | TTACCTTAGTGTACTGACGG+AGG | - | chr5_4:14528105-14528124 | None:intergenic | 45.0% |
| AATGCAGCTCATCTGTTGGA+CGG | + | chr5_4:14528242-14528261 | Msa0839490:intron | 45.0% | |
| ! | TTCTTTCTCCCTTTGGTGGT+TGG | - | chr5_4:14528511-14528530 | None:intergenic | 45.0% |
| ! | ACGGCTCCGTGATTTTTACA+AGG | - | chr5_4:14528791-14528810 | None:intergenic | 45.0% |
| !!! | TAGCGGCATACGCTAGTTTT+TGG | + | chr5_4:14528876-14528895 | Msa0839490:intron | 45.0% |
| ! | ACCTTTGTGGGCTATTTGAC+AGG | + | chr5_4:14529048-14529067 | Msa0839490:intron | 45.0% |
| ! | CCTTTGTGGGCTATTTGACA+GGG | + | chr5_4:14529049-14529068 | Msa0839490:intron | 45.0% |
| ! | CTTTGTGGGCTATTTGACAG+GGG | + | chr5_4:14529050-14529069 | Msa0839490:intron | 45.0% |
| GGGGAAGAAACAAGAAGCTT+TGG | + | chr5_4:14529069-14529088 | Msa0839490:intron | 45.0% | |
| ACGCCTATTCATTGGCGATA+GGG | + | chr5_4:14529217-14529236 | Msa0839490:three_prime_UTR | 45.0% | |
| AGACAACCGTGTAACCATCC+CGG | + | chr5_4:14525764-14525783 | Msa0839490:intron | 50.0% | |
| AGATGATGCGCACATCATCC+TGG | + | chr5_4:14525825-14525844 | Msa0839490:CDS | 50.0% | |
| AGACAGGAACATACGTCTGG+TGG | - | chr5_4:14525888-14525907 | None:intergenic | 50.0% | |
| AGGAGACAGGAACATACGTC+TGG | - | chr5_4:14525891-14525910 | None:intergenic | 50.0% | |
| GGGCTACCGTTTCAAGAATC+TGG | + | chr5_4:14526145-14526164 | Msa0839490:CDS | 50.0% | |
| TGGGCCCCAGATTCTTGAAA+CGG | - | chr5_4:14526154-14526173 | None:intergenic | 50.0% | |
| ! | TGCAAGTGCATTTGGTGACC+GGG | + | chr5_4:14527137-14527156 | Msa0839490:intron | 50.0% |
| ! | GACAGAAGCACGACGACAAA+AGG | - | chr5_4:14527207-14527226 | None:intergenic | 50.0% |
| TGTCGTCGTGCTTCTGTCAA+AGG | + | chr5_4:14527209-14527228 | Msa0839490:intron | 50.0% | |
| GGTGTCAGATCAGCTTATCC+TGG | + | chr5_4:14527561-14527580 | Msa0839490:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_4:14527963-14527982 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_4:14527969-14527988 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_4:14527966-14527985 | Msa0839490:intron | 50.0% | |
| ! | GTGTACTGACGGAGGTCAAT+AGG | - | chr5_4:14528097-14528116 | None:intergenic | 50.0% |
| TGACCTCCGTCAGTACACTA+AGG | + | chr5_4:14528099-14528118 | Msa0839490:intron | 50.0% | |
| GCTCAATGCAGCTCATCTGT+TGG | + | chr5_4:14528238-14528257 | Msa0839490:intron | 50.0% | |
| ACCTGTGTTCCAACCACCAA+AGG | + | chr5_4:14528499-14528518 | Msa0839490:intron | 50.0% | |
| CCTGTGTTCCAACCACCAAA+GGG | + | chr5_4:14528500-14528519 | Msa0839490:intron | 50.0% | |
| AGGCTTCTTTCTCCCTTTGG+TGG | - | chr5_4:14528515-14528534 | None:intergenic | 50.0% | |
| CAGAGGCTTCTTTCTCCCTT+TGG | - | chr5_4:14528518-14528537 | None:intergenic | 50.0% | |
| CGCTAATTGTGACGCTCACA+CGG | - | chr5_4:14528861-14528880 | None:intergenic | 50.0% | |
| CGTGTGAGCGTCACAATTAG+CGG | + | chr5_4:14528859-14528878 | Msa0839490:intron | 50.0% | |
| TGGAAGAGTCCTCTTCATGG+AGG | + | chr5_4:14528904-14528923 | Msa0839490:intron | 50.0% | |
| GGAAGAGTCCTCTTCATGGA+GGG | + | chr5_4:14528905-14528924 | Msa0839490:intron | 50.0% | |
| CCCTGTCAAATAGCCCACAA+AGG | - | chr5_4:14529052-14529071 | None:intergenic | 50.0% | |
| GACGCCTATTCATTGGCGAT+AGG | + | chr5_4:14529216-14529235 | Msa0839490:three_prime_UTR | 50.0% | |
| TAGGGATAGGTCAGTCTGAC+AGG | + | chr5_4:14529235-14529254 | Msa0839490:three_prime_UTR | 50.0% | |
| AGGGATAGGTCAGTCTGACA+GGG | + | chr5_4:14529236-14529255 | Msa0839490:three_prime_UTR | 50.0% | |
| ! | TCAGTCTGACAGGGGTTTTC+TGG | + | chr5_4:14529245-14529264 | Msa0839490:three_prime_UTR | 50.0% |
| TACTGGCCGGGATGGTTACA+CGG | - | chr5_4:14525773-14525792 | None:intergenic | 55.0% | |
| TCAGAGCGTGATTAACGGCC+AGG | - | chr5_4:14525846-14525865 | None:intergenic | 55.0% | |
| ACGCTCTGATCACACGGTCA+TGG | + | chr5_4:14525857-14525876 | Msa0839490:CDS | 55.0% | |
| ! | GCAAGTGCATTTGGTGACCG+GGG | + | chr5_4:14527138-14527157 | Msa0839490:intron | 55.0% |
| ! | CAAGTGCATTTGGTGACCGG+GGG | + | chr5_4:14527139-14527158 | Msa0839490:intron | 55.0% |
| CATAGCCGACCCCACTTAGT+GGG | + | chr5_4:14527955-14527974 | Msa0839490:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_4:14527961-14527980 | Msa0839490:intron | 55.0% | |
| ! | CCCTTTGGTGGTTGGAACAC+AGG | - | chr5_4:14528503-14528522 | None:intergenic | 55.0% |
| TTGCAGAGCCCTCCATGAAG+AGG | - | chr5_4:14528916-14528935 | None:intergenic | 55.0% | |
| GGGATAGGTCAGTCTGACAG+GGG | + | chr5_4:14529237-14529256 | Msa0839490:three_prime_UTR | 55.0% | |
| ACCATCCCGGCCAGTAGAAC+TGG | + | chr5_4:14525777-14525796 | Msa0839490:intron | 60.0% | |
| CCATCCCGGCCAGTAGAACT+GGG | + | chr5_4:14525778-14525797 | Msa0839490:intron | 60.0% | |
| CGTTCTCGGCCCAGTTCTAC+TGG | - | chr5_4:14525790-14525809 | None:intergenic | 60.0% | |
| GGGGTCGGCTATGGAGAGTA+AGG | - | chr5_4:14527948-14527967 | None:intergenic | 60.0% | |
| CCACTAAGTGGGGTCGGCTA+TGG | - | chr5_4:14527957-14527976 | None:intergenic | 60.0% | |
| CCATAGCCGACCCCACTTAG+TGG | + | chr5_4:14527954-14527973 | Msa0839490:intron | 60.0% | |
| CCCAGTTCTACTGGCCGGGA+TGG | - | chr5_4:14525781-14525800 | None:intergenic | 65.0% | |
| TCGGCCCAGTTCTACTGGCC+GGG | - | chr5_4:14525785-14525804 | None:intergenic | 65.0% | |
| CTCGGCCCAGTTCTACTGGC+CGG | - | chr5_4:14525786-14525805 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 14525582 | 14529438 | 14525582 | ID=Msa0839490;Name=Msa0839490 |
| chr5_4 | mRNA | 14525582 | 14529438 | 14525582 | ID=Msa0839490-mRNA-1;Parent=Msa0839490;Name=Msa0839490-mRNA-1;_AED=0.25;_eAED=0.30;_QI=0|0.16|0.28|0.85|0|0.14|7|300|195 |
| chr5_4 | exon | 14525582 | 14525639 | 14525582 | ID=Msa0839490-mRNA-1:exon:6341;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14525791 | 14525960 | 14525791 | ID=Msa0839490-mRNA-1:exon:6342;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14526123 | 14526193 | 14526123 | ID=Msa0839490-mRNA-1:exon:6343;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14526894 | 14527034 | 14526894 | ID=Msa0839490-mRNA-1:exon:6344;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14527143 | 14527182 | 14527143 | ID=Msa0839490-mRNA-1:exon:6345;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14527376 | 14527414 | 14527376 | ID=Msa0839490-mRNA-1:exon:6346;Parent=Msa0839490-mRNA-1 |
| chr5_4 | exon | 14529070 | 14529438 | 14529070 | ID=Msa0839490-mRNA-1:exon:6347;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14525582 | 14525639 | 14525582 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14525791 | 14525960 | 14525791 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14526123 | 14526193 | 14526123 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14526894 | 14527034 | 14526894 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14527143 | 14527182 | 14527143 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14527376 | 14527414 | 14527376 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | CDS | 14529070 | 14529138 | 14529070 | ID=Msa0839490-mRNA-1:cds;Parent=Msa0839490-mRNA-1 |
| chr5_4 | three_prime_UTR | 14529139 | 14529438 | 14529139 | ID=Msa0839490-mRNA-1:three_prime_utr;Parent=Msa0839490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
