Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801110 | KEH27642.1 | 98.214 | 56 | 1 | 0 | 1 | 56 | 10 | 65 | 1.86e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801110 | A0A072UDD9 | 98.214 | 56 | 1 | 0 | 1 | 56 | 10 | 65 | 8.91e-31 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0801110 | 0.812458 | 4.197296e-51 | -8.615850e-47 |
| Msa0015300 | Msa0801110 | 0.803886 | 2.814024e-49 | -8.615850e-47 |
| Msa0023000 | Msa0801110 | 0.838214 | 3.285497e-57 | -8.615850e-47 |
| Msa0024210 | Msa0801110 | -0.801924 | 7.155396e-49 | -8.615850e-47 |
| Msa0025730 | Msa0801110 | 0.813703 | 2.238419e-51 | -8.615850e-47 |
| Msa0027260 | Msa0801110 | 0.836988 | 6.775804e-57 | -8.615850e-47 |
| Msa0044000 | Msa0801110 | 0.809837 | 1.552936e-50 | -8.615850e-47 |
| Msa0055180 | Msa0801110 | 0.821339 | 4.255973e-53 | -8.615850e-47 |
| Msa0055190 | Msa0801110 | 0.801379 | 9.257209e-49 | -8.615850e-47 |
| Msa0056470 | Msa0801110 | 0.831917 | 1.271615e-55 | -8.615850e-47 |
| Msa0084940 | Msa0801110 | 0.822275 | 2.583858e-53 | -8.615850e-47 |
| Msa0096980 | Msa0801110 | 0.802922 | 4.458171e-49 | -8.615850e-47 |
| Msa0100740 | Msa0801110 | 0.821371 | 4.183893e-53 | -8.615850e-47 |
| Msa0115270 | Msa0801110 | 0.807591 | 4.689674e-50 | -8.615850e-47 |
| Msa0118780 | Msa0801110 | 0.836905 | 7.113823e-57 | -8.615850e-47 |
| Msa0607050 | Msa0801110 | 0.806999 | 6.261745e-50 | -8.615850e-47 |
| Msa0607340 | Msa0801110 | -0.803439 | 3.483776e-49 | -8.615850e-47 |
| Msa0608710 | Msa0801110 | 0.810081 | 1.375961e-50 | -8.615850e-47 |
| Msa0610430 | Msa0801110 | 0.810917 | 9.080904e-51 | -8.615850e-47 |
| Msa0639310 | Msa0801110 | 0.812607 | 3.893659e-51 | -8.615850e-47 |
| Msa0647450 | Msa0801110 | -0.804913 | 1.719212e-49 | -8.615850e-47 |
| Msa0647500 | Msa0801110 | 0.810984 | 8.783750e-51 | -8.615850e-47 |
| Msa0649490 | Msa0801110 | 0.800100 | 1.688879e-48 | -8.615850e-47 |
| Msa0650190 | Msa0801110 | 0.812541 | 4.024384e-51 | -8.615850e-47 |
| Msa0654760 | Msa0801110 | -0.802126 | 6.503248e-49 | -8.615850e-47 |
| Msa0661300 | Msa0801110 | 0.832808 | 7.651527e-56 | -8.615850e-47 |
| Msa0690150 | Msa0801110 | 0.806297 | 8.807671e-50 | -8.615850e-47 |
| Msa0692840 | Msa0801110 | 0.839952 | 1.164498e-57 | -8.615850e-47 |
| Msa0692940 | Msa0801110 | 0.832789 | 7.734717e-56 | -8.615850e-47 |
| Msa0697940 | Msa0801110 | 0.814649 | 1.383443e-51 | -8.615850e-47 |
| Msa0698540 | Msa0801110 | 0.801437 | 9.007953e-49 | -8.615850e-47 |
| Msa0709500 | Msa0801110 | 0.826514 | 2.602432e-54 | -8.615850e-47 |
| Msa0713820 | Msa0801110 | 0.809607 | 1.740588e-50 | -8.615850e-47 |
| Msa0722020 | Msa0801110 | 0.834275 | 3.292450e-56 | -8.615850e-47 |
| Msa0727150 | Msa0801110 | 0.816782 | 4.629827e-52 | -8.615850e-47 |
| Msa0743720 | Msa0801110 | 0.805999 | 1.017774e-49 | -8.615850e-47 |
| Msa0756060 | Msa0801110 | 0.809967 | 1.456316e-50 | -8.615850e-47 |
| Msa0761940 | Msa0801110 | 0.807543 | 4.802453e-50 | -8.615850e-47 |
| Msa0763020 | Msa0801110 | 0.818260 | 2.150981e-52 | -8.615850e-47 |
| Msa0763070 | Msa0801110 | 0.820640 | 6.163766e-53 | -8.615850e-47 |
| Msa0771720 | Msa0801110 | 0.848840 | 4.742661e-60 | -8.615850e-47 |
| Msa0790660 | Msa0801110 | -0.818592 | 1.808719e-52 | -8.615850e-47 |
| Msa0790850 | Msa0801110 | 0.820832 | 5.568165e-53 | -8.615850e-47 |
| Msa0801110 | Msa0808080 | 0.804115 | 2.521952e-49 | -8.615850e-47 |
| Msa0801110 | Msa0813720 | 0.801125 | 1.043506e-48 | -8.615850e-47 |
| Msa0801110 | Msa0839490 | 0.876866 | 9.929156e-69 | -8.615850e-47 |
| Msa0801110 | Msa0842830 | 0.817692 | 2.890542e-52 | -8.615850e-47 |
| Msa0801110 | Msa0847080 | 0.814701 | 1.347683e-51 | -8.615850e-47 |
| Msa0801110 | Msa0849030 | 0.807402 | 5.143400e-50 | -8.615850e-47 |
| Msa0801110 | Msa0866550 | 0.814048 | 1.878765e-51 | -8.615850e-47 |
| Msa0801110 | Msa0869120 | 0.806555 | 7.773130e-50 | -8.615850e-47 |
| Msa0801110 | Msa0876580 | 0.807877 | 4.078862e-50 | -8.615850e-47 |
| Msa0801110 | Msa0877410 | 0.802256 | 6.115690e-49 | -8.615850e-47 |
| Msa0801110 | Msa0881460 | 0.800510 | 1.393423e-48 | -8.615850e-47 |
| Msa0801110 | Msa0894950 | 0.828223 | 1.012958e-54 | -8.615850e-47 |
| Msa0801110 | Msa0902760 | 0.819744 | 9.887483e-53 | -8.615850e-47 |
| Msa0801110 | Msa0968590 | 0.817336 | 3.477359e-52 | -8.615850e-47 |
| Msa0801110 | Msa1012320 | 0.811777 | 5.907407e-51 | -8.615850e-47 |
| Msa0801110 | Msa1013040 | 0.807914 | 4.004340e-50 | -8.615850e-47 |
| Msa0801110 | Msa1013400 | 0.820972 | 5.169630e-53 | -8.615850e-47 |
| Msa0801110 | Msa1040400 | 0.817592 | 3.045114e-52 | -8.615850e-47 |
| Msa0801110 | Msa1046020 | 0.818376 | 2.024612e-52 | -8.615850e-47 |
| Msa0801110 | Msa1046060 | 0.814225 | 1.717141e-51 | -8.615850e-47 |
| Msa0801110 | Msa1060220 | 0.833787 | 4.363469e-56 | -8.615850e-47 |
| Msa0801110 | Msa1063510 | 0.812905 | 3.350048e-51 | -8.615850e-47 |
| Msa0801110 | Msa1081360 | -0.856279 | 3.582244e-62 | -8.615850e-47 |
| Msa0801110 | Msa1081930 | 0.845438 | 4.060913e-59 | -8.615850e-47 |
| Msa0801110 | Msa1091100 | 0.814771 | 1.299873e-51 | -8.615850e-47 |
| Msa0801110 | Msa1091530 | 0.811120 | 8.204662e-51 | -8.615850e-47 |
| Msa0801110 | Msa1093530 | 0.822181 | 2.717326e-53 | -8.615850e-47 |
| Msa0801110 | Msa1125760 | 0.807579 | 4.718971e-50 | -8.615850e-47 |
| Msa0801110 | Msa1126510 | 0.807755 | 4.328888e-50 | -8.615850e-47 |
| Msa0801110 | Msa1126830 | 0.807773 | 4.290858e-50 | -8.615850e-47 |
| Msa0801110 | Msa1134090 | 0.805334 | 1.403877e-49 | -8.615850e-47 |
| Msa0801110 | Msa1150710 | 0.802934 | 4.432366e-49 | -8.615850e-47 |
| Msa0801110 | Msa1165940 | 0.854387 | 1.273205e-61 | -8.615850e-47 |
| Msa0801110 | Msa1171360 | 0.826539 | 2.565944e-54 | -8.615850e-47 |
| Msa0801110 | Msa1174040 | 0.811652 | 6.291259e-51 | -8.615850e-47 |
| Msa0801110 | Msa1190930 | 0.810669 | 1.027671e-50 | -8.615850e-47 |
| Msa0801110 | Msa1201560 | 0.800132 | 1.663636e-48 | -8.615850e-47 |
| Msa0801110 | Msa1204250 | 0.814966 | 1.177038e-51 | -8.615850e-47 |
| Msa0801110 | Msa1207270 | 0.833290 | 5.807509e-56 | -8.615850e-47 |
| Msa0801110 | Msa1211890 | 0.813998 | 1.926452e-51 | -8.615850e-47 |
| Msa0801110 | Msa1218600 | 0.806476 | 8.077310e-50 | -8.615850e-47 |
| Msa0801110 | Msa1239910 | 0.833899 | 4.090817e-56 | -8.615850e-47 |
| Msa0801110 | Msa1244600 | 0.811140 | 8.125257e-51 | -8.615850e-47 |
| Msa0801110 | Msa1244610 | 0.810957 | 8.901018e-51 | -8.615850e-47 |
| Msa0801110 | Msa1247250 | 0.822031 | 2.944198e-53 | -8.615850e-47 |
| Msa0801110 | Msa1251160 | 0.813797 | 2.134196e-51 | -8.615850e-47 |
| Msa0801110 | Msa1253020 | 0.841392 | 4.884724e-58 | -8.615850e-47 |
| Msa0801110 | Msa1254730 | 0.840116 | 1.055546e-57 | -8.615850e-47 |
| Msa0801110 | Msa1275360 | 0.833932 | 4.012643e-56 | -8.615850e-47 |
| Msa0801110 | Msa1279400 | 0.802392 | 5.734057e-49 | -8.615850e-47 |
| Msa0801110 | Msa1294480 | 0.801003 | 1.105203e-48 | -8.615850e-47 |
| Msa0801110 | Msa1294820 | 0.827136 | 1.848262e-54 | -8.615850e-47 |
| Msa0801110 | Msa1296830 | 0.811379 | 7.210685e-51 | -8.615850e-47 |
| Msa0801110 | Msa1305710 | 0.803040 | 4.214415e-49 | -8.615850e-47 |
| Msa0801110 | Msa1333110 | 0.818751 | 1.664119e-52 | -8.615850e-47 |
| Msa0801110 | Msa1355970 | 0.804934 | 1.702246e-49 | -8.615850e-47 |
| Msa0801110 | Msa1361100 | 0.804611 | 1.988272e-49 | -8.615850e-47 |
| Msa0801110 | Msa1361520 | 0.805497 | 1.297503e-49 | -8.615850e-47 |
| Msa0801110 | Msa1367590 | 0.820862 | 5.481656e-53 | -8.615850e-47 |
| Msa0801110 | Msa1368120 | 0.816843 | 4.486819e-52 | -8.615850e-47 |
| Msa0801110 | Msa1385770 | 0.820251 | 7.571109e-53 | -8.615850e-47 |
| Msa0801110 | Msa1386780 | 0.814568 | 1.441769e-51 | -8.615850e-47 |
| Msa0801110 | Msa1393740 | 0.815486 | 9.018257e-52 | -8.615850e-47 |
| Msa0801110 | Msa1402420 | -0.861577 | 9.301768e-64 | -8.615850e-47 |
| Msa0801110 | Msa1403800 | 0.804343 | 2.260882e-49 | -8.615850e-47 |
| Msa0801110 | Msa1404010 | 0.806872 | 6.662341e-50 | -8.615850e-47 |
| Msa0801110 | Msa1407460 | 0.805723 | 1.163007e-49 | -8.615850e-47 |
| Msa0801110 | Msa1409240 | 0.819023 | 1.443864e-52 | -8.615850e-47 |
| Msa0801110 | Msa1428880 | 0.808316 | 3.288742e-50 | -8.615850e-47 |
| Msa0801110 | Msa1432420 | 0.803269 | 3.779426e-49 | -8.615850e-47 |
| Msa0801110 | Msa1434140 | 0.811648 | 6.303424e-51 | -8.615850e-47 |
| Msa0801110 | Msa1434420 | -0.843823 | 1.105544e-58 | -8.615850e-47 |
| Msa0801110 | Msa1444740 | 0.802502 | 5.442664e-49 | -8.615850e-47 |
| Msa0801110 | Msa1451550 | 0.815171 | 1.060070e-51 | -8.615850e-47 |
| Msa0801110 | Msa1451560 | 0.818072 | 2.371782e-52 | -8.615850e-47 |
| Msa0801110 | Msa1453080 | 0.803788 | 2.949538e-49 | -8.615850e-47 |
| Msa0801110 | Msa1461280 | 0.833599 | 4.861364e-56 | -8.615850e-47 |
| Msa0127800 | Msa0801110 | 0.803398 | 3.553516e-49 | -8.615850e-47 |
| Msa0140110 | Msa0801110 | 0.838984 | 2.078245e-57 | -8.615850e-47 |
| Msa0140650 | Msa0801110 | 0.850077 | 2.144178e-60 | -8.615850e-47 |
| Msa0140820 | Msa0801110 | 0.859059 | 5.372996e-63 | -8.615850e-47 |
| Msa0145010 | Msa0801110 | 0.806518 | 7.910508e-50 | -8.615850e-47 |
| Msa0157100 | Msa0801110 | 0.817049 | 4.033260e-52 | -8.615850e-47 |
| Msa0162130 | Msa0801110 | 0.827027 | 1.962232e-54 | -8.615850e-47 |
| Msa0184780 | Msa0801110 | 0.815929 | 7.187098e-52 | -8.615850e-47 |
| Msa0189520 | Msa0801110 | 0.830411 | 2.982015e-55 | -8.615850e-47 |
| Msa0194480 | Msa0801110 | 0.826218 | 3.060788e-54 | -8.615850e-47 |
| Msa0194950 | Msa0801110 | -0.817881 | 2.620118e-52 | -8.615850e-47 |
| Msa0199690 | Msa0801110 | 0.812531 | 4.044759e-51 | -8.615850e-47 |
| Msa0199880 | Msa0801110 | 0.821905 | 3.148101e-53 | -8.615850e-47 |
| Msa0220250 | Msa0801110 | 0.808245 | 3.404326e-50 | -8.615850e-47 |
| Msa0231980 | Msa0801110 | 0.846265 | 2.420995e-59 | -8.615850e-47 |
| Msa0232050 | Msa0801110 | 0.841114 | 5.783372e-58 | -8.615850e-47 |
| Msa0233350 | Msa0801110 | 0.800518 | 1.388387e-48 | -8.615850e-47 |
| Msa0366890 | Msa0801110 | 0.842453 | 2.561733e-58 | -8.615850e-47 |
| Msa0369450 | Msa0801110 | 0.827944 | 1.182742e-54 | -8.615850e-47 |
| Msa0376300 | Msa0801110 | 0.817792 | 2.743808e-52 | -8.615850e-47 |
| Msa0376310 | Msa0801110 | 0.825166 | 5.436282e-54 | -8.615850e-47 |
| Msa0378490 | Msa0801110 | 0.824909 | 6.252965e-54 | -8.615850e-47 |
| Msa0380300 | Msa0801110 | 0.824144 | 9.465865e-54 | -8.615850e-47 |
| Msa0385580 | Msa0801110 | 0.834470 | 2.942215e-56 | -8.615850e-47 |
| Msa0388700 | Msa0801110 | 0.804445 | 2.152434e-49 | -8.615850e-47 |
| Msa0391690 | Msa0801110 | 0.807165 | 5.775488e-50 | -8.615850e-47 |
| Msa0395820 | Msa0801110 | 0.814231 | 1.711855e-51 | -8.615850e-47 |
| Msa0402790 | Msa0801110 | 0.808475 | 3.040952e-50 | -8.615850e-47 |
| Msa0405370 | Msa0801110 | 0.800160 | 1.642019e-48 | -8.615850e-47 |
| Msa0414800 | Msa0801110 | 0.820794 | 5.683121e-53 | -8.615850e-47 |
| Msa0415430 | Msa0801110 | 0.836103 | 1.138353e-56 | -8.615850e-47 |
| Msa0425400 | Msa0801110 | 0.801401 | 9.161772e-49 | -8.615850e-47 |
| Msa0433360 | Msa0801110 | 0.819681 | 1.022068e-52 | -8.615850e-47 |
| Msa0439200 | Msa0801110 | 0.819799 | 9.604933e-53 | -8.615850e-47 |
| Msa0458060 | Msa0801110 | 0.803007 | 4.280412e-49 | -8.615850e-47 |
| Msa0469850 | Msa0801110 | 0.816204 | 6.239297e-52 | -8.615850e-47 |
| Msa0469990 | Msa0801110 | 0.826079 | 3.302681e-54 | -8.615850e-47 |
| Msa0471440 | Msa0801110 | 0.836302 | 1.013276e-56 | -8.615850e-47 |
| Msa0471590 | Msa0801110 | 0.815347 | 9.683189e-52 | -8.615850e-47 |
| Msa0477080 | Msa0801110 | 0.826064 | 3.330697e-54 | -8.615850e-47 |
| Msa0261550 | Msa0801110 | 0.809255 | 2.071617e-50 | -8.615850e-47 |
| Msa0271890 | Msa0801110 | 0.800752 | 1.243881e-48 | -8.615850e-47 |
| Msa0273900 | Msa0801110 | 0.804935 | 1.701218e-49 | -8.615850e-47 |
| Msa0280610 | Msa0801110 | 0.830376 | 3.041865e-55 | -8.615850e-47 |
| Msa0291500 | Msa0801110 | 0.815892 | 7.323489e-52 | -8.615850e-47 |
| Msa0298700 | Msa0801110 | 0.809134 | 2.199047e-50 | -8.615850e-47 |
| Msa0310030 | Msa0801110 | 0.807927 | 3.978619e-50 | -8.615850e-47 |
| Msa0310860 | Msa0801110 | 0.801041 | 1.085630e-48 | -8.615850e-47 |
| Msa0311700 | Msa0801110 | 0.807336 | 5.313124e-50 | -8.615850e-47 |
| Msa0315440 | Msa0801110 | -0.819101 | 1.385740e-52 | -8.615850e-47 |
| Msa0346430 | Msa0801110 | 0.809950 | 1.468435e-50 | -8.615850e-47 |
| Msa0485340 | Msa0801110 | 0.817008 | 4.120799e-52 | -8.615850e-47 |
| Msa0485850 | Msa0801110 | 0.827365 | 1.628827e-54 | -8.615850e-47 |
| Msa0493410 | Msa0801110 | 0.800900 | 1.160100e-48 | -8.615850e-47 |
| Msa0497210 | Msa0801110 | 0.814370 | 1.594875e-51 | -8.615850e-47 |
| Msa0512340 | Msa0801110 | 0.802839 | 4.637613e-49 | -8.615850e-47 |
| Msa0518390 | Msa0801110 | 0.816353 | 5.777223e-52 | -8.615850e-47 |
| Msa0518450 | Msa0801110 | 0.802241 | 6.160012e-49 | -8.615850e-47 |
| Msa0521050 | Msa0801110 | 0.830203 | 3.351158e-55 | -8.615850e-47 |
| Msa0524500 | Msa0801110 | 0.808916 | 2.447681e-50 | -8.615850e-47 |
| Msa0534900 | Msa0801110 | 0.810564 | 1.082730e-50 | -8.615850e-47 |
| Msa0548240 | Msa0801110 | 0.818728 | 1.684377e-52 | -8.615850e-47 |
| Msa0552810 | Msa0801110 | 0.806626 | 7.509306e-50 | -8.615850e-47 |
| Msa0553220 | Msa0801110 | -0.809694 | 1.666879e-50 | -8.615850e-47 |
| Msa0556060 | Msa0801110 | 0.813726 | 2.212265e-51 | -8.615850e-47 |
| Msa0581110 | Msa0801110 | 0.811370 | 7.243207e-51 | -8.615850e-47 |
| Msa0588260 | Msa0801110 | 0.814967 | 1.176420e-51 | -8.615850e-47 |
| Msa0589190 | Msa0801110 | 0.836148 | 1.108654e-56 | -8.615850e-47 |
| Msa0592440 | Msa0801110 | 0.803315 | 3.697010e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801110 | MtrunA17_Chr5g0406991 | 50.575 | 87 | 23 | 1 | 86 | 152 | 237 | 323 | 4.75e-15 | 72.0 |
| Msa0801110 | MtrunA17_Chr5g0407861 | 77.143 | 35 | 8 | 0 | 93 | 127 | 1 | 35 | 1.78e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTAGATTTCAACTAATTT+TGG | 0.141021 | 5_3:-14807897 | None:intergenic |
| GCTTTGCTTTATCCTATTTA+TGG | 0.157298 | 5_3:+14805664 | Msa0801110:CDS |
| GCCTGTTATTTCTCTGCTTA+TGG | 0.158116 | 5_3:+14805890 | Msa0801110:CDS |
| CAATCATGAAAAGCCGAAAA+TGG | 0.236878 | 5_3:-14804674 | None:intergenic |
| AGTTCTCATTCACCATAAAT+AGG | 0.297088 | 5_3:-14805676 | None:intergenic |
| GGGCTACCGTTTCAAGAATC+TGG | 0.301797 | 5_3:+14804648 | Msa0801110:CDS |
| AGTTGAAATCTAGTTGATAT+TGG | 0.314611 | 5_3:+14807905 | Msa0801110:three_prime_UTR |
| TATTTCTCTGCTTATGGATA+AGG | 0.336392 | 5_3:+14805896 | Msa0801110:CDS |
| TACTGTGTCCTTGATTTCTA+AGG | 0.355069 | 5_3:-14804411 | None:intergenic |
| GACAAATAAATCGGCTGAAA+TGG | 0.357707 | 5_3:-14807811 | None:intergenic |
| ATCAAGAAAATGTCGAGCTT+TGG | 0.361421 | 5_3:+14805450 | Msa0801110:CDS |
| AGTTAACCATCCTAACATTT+CGG | 0.363419 | 5_3:-14807874 | None:intergenic |
| TTCCGGTTTGCAAGTGCATT+TGG | 0.365624 | 5_3:+14805632 | Msa0801110:intron |
| TTGTATTAGACCGAAATGTT+AGG | 0.393830 | 5_3:+14807864 | Msa0801110:three_prime_UTR |
| TTGCAAGTGCATTTGGTGAC+CGG | 0.397116 | 5_3:+14805639 | Msa0801110:intron |
| TTGAACAGGATCTGTTCTAT+AGG | 0.397187 | 5_3:-14804441 | None:intergenic |
| GGGGAAGAAACAAGAAGCTT+TGG | 0.399238 | 5_3:+14807580 | Msa0801110:intron |
| GGCTACCGTTTCAAGAATCT+GGG | 0.401576 | 5_3:+14804649 | Msa0801110:CDS |
| CAGCTGTAGATGATCGTTCT+CGG | 0.403248 | 5_3:-14804304 | None:intergenic |
| AAGCACGACCTTACTTGAAC+AGG | 0.416803 | 5_3:-14804455 | None:intergenic |
| TATCCCTATCGCCAATGAAT+AGG | 0.431398 | 5_3:-14807731 | None:intergenic |
| TAGGGATAGGTCAGTCTGAC+AGG | 0.434663 | 5_3:+14807746 | Msa0801110:three_prime_UTR |
| TGTGATCAGAGCGTGATTAA+CGG | 0.435008 | 5_3:-14804351 | None:intergenic |
| TCCATAAGCAGAGAAATAAC+AGG | 0.436213 | 5_3:-14805891 | None:intergenic |
| GCAGAGAAATAACAGGCATT+AGG | 0.442471 | 5_3:-14805884 | None:intergenic |
| CAGCTAAACAAAAGCAGCTC+TGG | 0.448952 | 5_3:+14804623 | Msa0801110:intron |
| TCCTGTCTCCTTAGAAATCA+AGG | 0.461663 | 5_3:+14804403 | Msa0801110:CDS |
| TGCAAGTGCATTTGGTGACC+GGG | 0.463131 | 5_3:+14805640 | Msa0801110:intron |
| TCAAAGTGACGCCTATTCAT+TGG | 0.465200 | 5_3:+14807720 | Msa0801110:three_prime_UTR |
| TTGCCATCAGACAAATAAAT+CGG | 0.474041 | 5_3:-14807820 | None:intergenic |
| CAGCCGATTTATTTGTCTGA+TGG | 0.475626 | 5_3:+14807817 | Msa0801110:three_prime_UTR |
| GGGAAGAAACAAGAAGCTTT+GGG | 0.478584 | 5_3:+14807581 | Msa0801110:CDS |
| CTAAACAAAAGCAGCTCTGG+TGG | 0.482668 | 5_3:+14804626 | Msa0801110:CDS |
| GACTTAGTTAAAACAAAAGA+TGG | 0.488429 | 5_3:+14805476 | Msa0801110:CDS |
| AATCATGAAAAGCCGAAAAT+GGG | 0.488445 | 5_3:-14804673 | None:intergenic |
| TCCTTGATTTCTAAGGAGAC+AGG | 0.494432 | 5_3:-14804404 | None:intergenic |
| TCAGAGCGTGATTAACGGCC+AGG | 0.504563 | 5_3:-14804346 | None:intergenic |
| GCTCAATACAGCTTAACTGT+TGG | 0.516772 | 5_3:+14805512 | Msa0801110:CDS |
| ACGCCTATTCATTGGCGATA+GGG | 0.520674 | 5_3:+14807728 | Msa0801110:three_prime_UTR |
| TATTCATTGGCGATAGGGAT+AGG | 0.528495 | 5_3:+14807733 | Msa0801110:three_prime_UTR |
| TGGGCCCCAGATTCTTGAAA+CGG | 0.547553 | 5_3:-14804654 | None:intergenic |
| AGATGATGCGCACATCATCC+TGG | 0.553802 | 5_3:+14804328 | Msa0801110:CDS |
| AGGAGACAGGAACATACGTC+TGG | 0.564339 | 5_3:-14804391 | None:intergenic |
| TAAACAAAAGCAGCTCTGGT+GGG | 0.572757 | 5_3:+14804627 | Msa0801110:CDS |
| AAACAAAAGCAGCTCTGGTG+GGG | 0.582133 | 5_3:+14804628 | Msa0801110:CDS |
| TCTCGCTAACGTGTTTCTAG+AGG | 0.583125 | 5_3:+14807641 | Msa0801110:exon |
| GTAATGATGCAGAAAGTGCT+AGG | 0.584565 | 5_3:+14807603 | Msa0801110:CDS |
| ACGCTCTGATCACACGGTCA+TGG | 0.593836 | 5_3:+14804360 | Msa0801110:CDS |
| GACGCCTATTCATTGGCGAT+AGG | 0.599124 | 5_3:+14807727 | Msa0801110:three_prime_UTR |
| TTCTTGATCGAAATCTACCA+TGG | 0.602048 | 5_3:-14805435 | None:intergenic |
| ATTAGACCGAAATGTTAGGA+TGG | 0.602572 | 5_3:+14807868 | Msa0801110:three_prime_UTR |
| CAAGTGCATTTGGTGACCGG+GGG | 0.603224 | 5_3:+14805642 | Msa0801110:intron |
| ACTCTCGACAAAATAACATA+CGG | 0.603416 | 5_3:+14807668 | Msa0801110:three_prime_UTR |
| AATACAGCTTAACTGTTGGA+AGG | 0.605833 | 5_3:+14805516 | Msa0801110:CDS |
| AGACAGGAACATACGTCTGG+TGG | 0.605959 | 5_3:-14804388 | None:intergenic |
| GCAAGTGCATTTGGTGACCG+GGG | 0.606129 | 5_3:+14805641 | Msa0801110:intron |
| TTAATCACGCTCTGATCACA+CGG | 0.616234 | 5_3:+14804354 | Msa0801110:CDS |
| AGGGATAGGTCAGTCTGACA+GGG | 0.622393 | 5_3:+14807747 | Msa0801110:three_prime_UTR |
| TTATTTGTCTGATGGCAACA+CGG | 0.652389 | 5_3:+14807825 | Msa0801110:three_prime_UTR |
| ATAGGATAAAGCAAAGCCCC+CGG | 0.655923 | 5_3:-14805658 | None:intergenic |
| GCTACCGTTTCAAGAATCTG+GGG | 0.699710 | 5_3:+14804650 | Msa0801110:CDS |
| GGGATAGGTCAGTCTGACAG+GGG | 0.723884 | 5_3:+14807748 | Msa0801110:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTAAGGATATATA+GGG | + | chr5_3:14806954-14806973 | Msa0801110:intron | 10.0% |
| !! | AGAGTTATATTTGTTTAATT+AGG | - | chr5_3:14805048-14805067 | None:intergenic | 15.0% |
| !!! | TGCATTTATTTAAGTTTTAA+AGG | + | chr5_3:14805736-14805755 | Msa0801110:intron | 15.0% |
| !!! | GCATTTATTTAAGTTTTAAA+GGG | + | chr5_3:14805737-14805756 | Msa0801110:intron | 15.0% |
| !! | ATTTAAAGAGAATGAAATTA+AGG | - | chr5_3:14805796-14805815 | None:intergenic | 15.0% |
| !!! | ATATTAAAATTTTGTGAATC+AGG | + | chr5_3:14805857-14805876 | Msa0801110:intron | 15.0% |
| !!! | TGTATATATTTTTCTTGAAA+AGG | + | chr5_3:14806337-14806356 | Msa0801110:intron | 15.0% |
| !!! | ATACTGTAAGTATTTTATTA+AGG | + | chr5_3:14806944-14806963 | Msa0801110:intron | 15.0% |
| !!! | GTATTTTATTAAGGATATAT+AGG | + | chr5_3:14806953-14806972 | Msa0801110:intron | 15.0% |
| !! | AATAATTATCTAATTCTTTC+CGG | + | chr5_3:14807516-14807535 | Msa0801110:intron | 15.0% |
| !!! | TTGCATTGTTCTTTTATATT+TGG | + | chr5_3:14804729-14804748 | Msa0801110:intron | 20.0% |
| !! | CAATGAATTTGACAAAATAA+CGG | - | chr5_3:14804882-14804901 | None:intergenic | 20.0% |
| !! | TCTATTGTAACAAAATTTCA+TGG | - | chr5_3:14805082-14805101 | None:intergenic | 20.0% |
| !! | TATCACTTGATTAAAAATCA+TGG | - | chr5_3:14805575-14805594 | None:intergenic | 20.0% |
| !!! | TGATTTTTAATCAAGTGATA+TGG | + | chr5_3:14805575-14805594 | Msa0801110:intron | 20.0% |
| !!! | TACAGTAAGTATTTTATCAT+AGG | + | chr5_3:14806157-14806176 | Msa0801110:intron | 20.0% |
| !!! | ACAGTAAGTATTTTATCATA+GGG | + | chr5_3:14806158-14806177 | Msa0801110:intron | 20.0% |
| !!! | TTTTCTTGAAAAGGTTAAAT+TGG | + | chr5_3:14806346-14806365 | Msa0801110:intron | 20.0% |
| !! | AAATACTTACAGTATTAACA+AGG | - | chr5_3:14806939-14806958 | None:intergenic | 20.0% |
| !!! | CATAGTTTAGTTTATGAATT+GGG | - | chr5_3:14807242-14807261 | None:intergenic | 20.0% |
| !! | TTGTGTAAAATTAGATTAGT+AGG | + | chr5_3:14807493-14807512 | Msa0801110:intron | 20.0% |
| !! | ATAATTATCTAATTCTTTCC+GGG | + | chr5_3:14807517-14807536 | Msa0801110:intron | 20.0% |
| !!! | AACTAGATTTCAACTAATTT+TGG | - | chr5_3:14807900-14807919 | None:intergenic | 20.0% |
| !! | CATTGTTCTTTTATATTTGG+TGG | + | chr5_3:14804732-14804751 | Msa0801110:intron | 25.0% |
| !! | GATTCAAGTTATTGTAATGA+AGG | + | chr5_3:14804903-14804922 | Msa0801110:intron | 25.0% |
| ! | TTGTCATTATAATTGATGGA+TGG | - | chr5_3:14805011-14805030 | None:intergenic | 25.0% |
| ! | GCTATTGTCATTATAATTGA+TGG | - | chr5_3:14805015-14805034 | None:intergenic | 25.0% |
| !! | AAATGCAGATTTGTATTTTG+TGG | - | chr5_3:14805121-14805140 | None:intergenic | 25.0% |
| ! | ATAATTCATATTGTTGCAGT+TGG | - | chr5_3:14805206-14805225 | None:intergenic | 25.0% |
| ! | ATGCACTATAAACAGTTATT+AGG | - | chr5_3:14805342-14805361 | None:intergenic | 25.0% |
| ! | GACTTAGTTAAAACAAAAGA+TGG | + | chr5_3:14805476-14805495 | Msa0801110:CDS | 25.0% |
| ! | ATATTTATCTTTGTCCTTTC+CGG | + | chr5_3:14805615-14805634 | Msa0801110:intron | 25.0% |
| !!! | AAGTTTTAAAGGGATTTATG+AGG | + | chr5_3:14805747-14805766 | Msa0801110:intron | 25.0% |
| ! | TAAAGACTTAACACAAAAGA+CGG | + | chr5_3:14806705-14806724 | Msa0801110:intron | 25.0% |
| !! | GCATAGTTTAGTTTATGAAT+TGG | - | chr5_3:14807243-14807262 | None:intergenic | 25.0% |
| !! | GCAAGTTTAAAATTAGAACA+GGG | - | chr5_3:14807450-14807469 | None:intergenic | 25.0% |
| !! | AGCAAGTTTAAAATTAGAAC+AGG | - | chr5_3:14807451-14807470 | None:intergenic | 25.0% |
| ! | TAATTATCTAATTCTTTCCG+GGG | + | chr5_3:14807518-14807537 | Msa0801110:intron | 25.0% |
| !! | AGTTGAAATCTAGTTGATAT+TGG | + | chr5_3:14807905-14807924 | Msa0801110:three_prime_UTR | 25.0% |
| ! | TTTTCTGTTATTAACCGATG+TGG | + | chr5_3:14804514-14804533 | Msa0801110:intron | 30.0% |
| TTTCTGTTATTAACCGATGT+GGG | + | chr5_3:14804515-14804534 | Msa0801110:intron | 30.0% | |
| TTCTATATCTGAACTCCAAA+GGG | - | chr5_3:14804570-14804589 | None:intergenic | 30.0% | |
| ATTCTATATCTGAACTCCAA+AGG | - | chr5_3:14804571-14804590 | None:intergenic | 30.0% | |
| AATCATGAAAAGCCGAAAAT+GGG | - | chr5_3:14804676-14804695 | None:intergenic | 30.0% | |
| TGAATTTGACAAAATAACGG+TGG | - | chr5_3:14804879-14804898 | None:intergenic | 30.0% | |
| ! | CAGATTTGTATTTTGTGGTA+TGG | - | chr5_3:14805116-14805135 | None:intergenic | 30.0% |
| ATCTGCATTTAGAAGTCATT+TGG | + | chr5_3:14805131-14805150 | Msa0801110:intron | 30.0% | |
| TATCTCGTTTCATAGTTCAT+TGG | + | chr5_3:14805292-14805311 | Msa0801110:intron | 30.0% | |
| GCTTTGCTTTATCCTATTTA+TGG | + | chr5_3:14805664-14805683 | Msa0801110:CDS | 30.0% | |
| AGTTCTCATTCACCATAAAT+AGG | - | chr5_3:14805679-14805698 | None:intergenic | 30.0% | |
| TATTTCTCTGCTTATGGATA+AGG | + | chr5_3:14805896-14805915 | Msa0801110:CDS | 30.0% | |
| !! | AATATTTTTGAGAAGAGACG+AGG | + | chr5_3:14805955-14805974 | Msa0801110:intron | 30.0% |
| TTAGACAAAGATTGTGTTGA+TGG | - | chr5_3:14806107-14806126 | None:intergenic | 30.0% | |
| TCAACACAATCTTTGTCTAA+AGG | + | chr5_3:14806107-14806126 | Msa0801110:intron | 30.0% | |
| AAAAGTTGAGAGATAAGAGT+GGG | - | chr5_3:14806194-14806213 | None:intergenic | 30.0% | |
| AAAAAGTTGAGAGATAAGAG+TGG | - | chr5_3:14806195-14806214 | None:intergenic | 30.0% | |
| CCAATGAAAGATGAAACAAA+TGG | - | chr5_3:14806397-14806416 | None:intergenic | 30.0% | |
| CCATTTGTTTCATCTTTCAT+TGG | + | chr5_3:14806394-14806413 | Msa0801110:intron | 30.0% | |
| TTTCATCTTTCATTGGAACT+TGG | + | chr5_3:14806401-14806420 | Msa0801110:intron | 30.0% | |
| TGCATTGTTTCATCTTTCAT+TGG | + | chr5_3:14806526-14806545 | Msa0801110:intron | 30.0% | |
| AAAGAATCCTGTTGAAGATA+AGG | - | chr5_3:14806636-14806655 | None:intergenic | 30.0% | |
| !! | GGAGATTTTGATCAAGAAAA+TGG | + | chr5_3:14806673-14806692 | Msa0801110:intron | 30.0% |
| ! | TTTTGATCAAGAAAATGGTG+AGG | + | chr5_3:14806678-14806697 | Msa0801110:intron | 30.0% |
| ! | TTGCCTCGAATTTTTATTCA+AGG | + | chr5_3:14806792-14806811 | Msa0801110:intron | 30.0% |
| ! | TGCCTCGAATTTTTATTCAA+GGG | + | chr5_3:14806793-14806812 | Msa0801110:intron | 30.0% |
| ATCCCTTGAATAAAAATTCG+AGG | - | chr5_3:14806798-14806817 | None:intergenic | 30.0% | |
| TTTATTCAAGGGATCTCAAT+TGG | + | chr5_3:14806804-14806823 | Msa0801110:intron | 30.0% | |
| GTACTTATCCATGTTCTTTA+CGG | + | chr5_3:14806843-14806862 | Msa0801110:intron | 30.0% | |
| TACTTATCCATGTTCTTTAC+GGG | + | chr5_3:14806844-14806863 | Msa0801110:intron | 30.0% | |
| !!! | ATTTTTTCCCGTAAAGAACA+TGG | - | chr5_3:14806854-14806873 | None:intergenic | 30.0% |
| TTAACAAGGCATGAATTTAC+AGG | - | chr5_3:14806925-14806944 | None:intergenic | 30.0% | |
| CCTTCACACATTTATTTGAA+AGG | - | chr5_3:14807161-14807180 | None:intergenic | 30.0% | |
| CCTTTCAAATAAATGTGTGA+AGG | + | chr5_3:14807158-14807177 | Msa0801110:intron | 30.0% | |
| ACACGGTATTCTTTAGTAAA+AGG | - | chr5_3:14807347-14807366 | None:intergenic | 30.0% | |
| !! | TTTTCTAAAGGAAACCTTTG+TGG | + | chr5_3:14807546-14807565 | Msa0801110:intron | 30.0% |
| ACTCTCGACAAAATAACATA+CGG | + | chr5_3:14807668-14807687 | Msa0801110:three_prime_UTR | 30.0% | |
| TTGCCATCAGACAAATAAAT+CGG | - | chr5_3:14807823-14807842 | None:intergenic | 30.0% | |
| TTGTATTAGACCGAAATGTT+AGG | + | chr5_3:14807864-14807883 | Msa0801110:three_prime_UTR | 30.0% | |
| AGTTAACCATCCTAACATTT+CGG | - | chr5_3:14807877-14807896 | None:intergenic | 30.0% | |
| TACTGTGTCCTTGATTTCTA+AGG | - | chr5_3:14804414-14804433 | None:intergenic | 35.0% | |
| TTGAACAGGATCTGTTCTAT+AGG | - | chr5_3:14804444-14804463 | None:intergenic | 35.0% | |
| CAATCATGAAAAGCCGAAAA+TGG | - | chr5_3:14804677-14804696 | None:intergenic | 35.0% | |
| ! | CATTTTCGGCTTTTCATGAT+TGG | + | chr5_3:14804675-14804694 | Msa0801110:CDS | 35.0% |
| GTTTGAATCGACAATGAACT+AGG | + | chr5_3:14804785-14804804 | Msa0801110:intron | 35.0% | |
| CAATGAACTAGGCAAAATCA+CGG | + | chr5_3:14804796-14804815 | Msa0801110:intron | 35.0% | |
| ! | AGCTTTTGCCAAAATCACAA+TGG | - | chr5_3:14804826-14804845 | None:intergenic | 35.0% |
| GCATACACAAAGTATGAATG+CGG | - | chr5_3:14805160-14805179 | None:intergenic | 35.0% | |
| ! | TCTTTTGTACTCTATAGCCA+TGG | + | chr5_3:14805418-14805437 | Msa0801110:CDS | 35.0% |
| TTCTTGATCGAAATCTACCA+TGG | - | chr5_3:14805438-14805457 | None:intergenic | 35.0% | |
| ATCAAGAAAATGTCGAGCTT+TGG | + | chr5_3:14805450-14805469 | Msa0801110:CDS | 35.0% | |
| AATACAGCTTAACTGTTGGA+AGG | + | chr5_3:14805516-14805535 | Msa0801110:CDS | 35.0% | |
| TCCATAAGCAGAGAAATAAC+AGG | - | chr5_3:14805894-14805913 | None:intergenic | 35.0% | |
| ATGAAATTGCTTTGCACTTG+GGG | - | chr5_3:14805990-14806009 | None:intergenic | 35.0% | |
| GATGAAATTGCTTTGCACTT+GGG | - | chr5_3:14805991-14806010 | None:intergenic | 35.0% | |
| AGATGAAATTGCTTTGCACT+TGG | - | chr5_3:14805992-14806011 | None:intergenic | 35.0% | |
| ! | GTTGATGGAATTACGAAACA+TGG | - | chr5_3:14806092-14806111 | None:intergenic | 35.0% |
| CTTTGTCTAAAGGAGTAACT+AGG | + | chr5_3:14806117-14806136 | Msa0801110:intron | 35.0% | |
| ACTCAGTGAAATGTGATGAT+TGG | + | chr5_3:14806234-14806253 | Msa0801110:intron | 35.0% | |
| ! | GTTTGAAGTCTTGAGATGTT+TGG | + | chr5_3:14806264-14806283 | Msa0801110:intron | 35.0% |
| ! | TCTTTTGTATGCTATAGCCA+TGG | + | chr5_3:14806651-14806670 | Msa0801110:intron | 35.0% |
| ! | CTTTTGTATGCTATAGCCAT+GGG | + | chr5_3:14806652-14806671 | Msa0801110:intron | 35.0% |
| TTCTTGATCAAAATCTCCCA+TGG | - | chr5_3:14806671-14806690 | None:intergenic | 35.0% | |
| AAGGCATGAATTTACAGGAA+GGG | - | chr5_3:14806920-14806939 | None:intergenic | 35.0% | |
| AGAAAGAGACTAAGATACAG+AGG | - | chr5_3:14807038-14807057 | None:intergenic | 35.0% | |
| ACCTCTCCTTGTAAAAATCA+CGG | + | chr5_3:14807285-14807304 | Msa0801110:intron | 35.0% | |
| ! | TCCTTTAGAAAAAACATCCC+CGG | - | chr5_3:14807538-14807557 | None:intergenic | 35.0% |
| GACAAATAAATCGGCTGAAA+TGG | - | chr5_3:14807814-14807833 | None:intergenic | 35.0% | |
| TTATTTGTCTGATGGCAACA+CGG | + | chr5_3:14807825-14807844 | Msa0801110:three_prime_UTR | 35.0% | |
| ATTAGACCGAAATGTTAGGA+TGG | + | chr5_3:14807868-14807887 | Msa0801110:three_prime_UTR | 35.0% | |
| TGTGATCAGAGCGTGATTAA+CGG | - | chr5_3:14804354-14804373 | None:intergenic | 40.0% | |
| TTAATCACGCTCTGATCACA+CGG | + | chr5_3:14804354-14804373 | Msa0801110:CDS | 40.0% | |
| TCCTGTCTCCTTAGAAATCA+AGG | + | chr5_3:14804403-14804422 | Msa0801110:CDS | 40.0% | |
| ! | TCCTTGATTTCTAAGGAGAC+AGG | - | chr5_3:14804407-14804426 | None:intergenic | 40.0% |
| GAACAGATCCTGTTCAAGTA+AGG | + | chr5_3:14804447-14804466 | Msa0801110:intron | 40.0% | |
| AAAGGGAGAGTCACAACAAA+AGG | - | chr5_3:14804553-14804572 | None:intergenic | 40.0% | |
| !! | TTTTGTTGTGACTCTCCCTT+TGG | + | chr5_3:14804552-14804571 | Msa0801110:intron | 40.0% |
| ! | TAAACAAAAGCAGCTCTGGT+GGG | + | chr5_3:14804627-14804646 | Msa0801110:CDS | 40.0% |
| GTACTCTTCAATGCACAAGA+AGG | - | chr5_3:14805272-14805291 | None:intergenic | 40.0% | |
| ! | TTATCTTAGTGTACTGACGC+TGG | - | chr5_3:14805375-14805394 | None:intergenic | 40.0% |
| GCTCAATACAGCTTAACTGT+TGG | + | chr5_3:14805512-14805531 | Msa0801110:CDS | 40.0% | |
| GCAGAGAAATAACAGGCATT+AGG | - | chr5_3:14805887-14805906 | None:intergenic | 40.0% | |
| !! | GCCTGTTATTTCTCTGCTTA+TGG | + | chr5_3:14805890-14805909 | Msa0801110:CDS | 40.0% |
| TGAAATTGCTTTGCACTTGG+GGG | - | chr5_3:14805989-14806008 | None:intergenic | 40.0% | |
| GAATTACGAAACATGGATCC+AGG | - | chr5_3:14806085-14806104 | None:intergenic | 40.0% | |
| CTCTGTATGCTTAAGCATTC+TGG | + | chr5_3:14806306-14806325 | Msa0801110:intron | 40.0% | |
| TATGCTTAAGCATTCTGGTG+CGG | + | chr5_3:14806311-14806330 | Msa0801110:intron | 40.0% | |
| GATGAAACAATGCATGCACA+TGG | - | chr5_3:14806520-14806539 | None:intergenic | 40.0% | |
| GCTTTACCTTAGTGTACTGA+CGG | - | chr5_3:14806611-14806630 | None:intergenic | 40.0% | |
| AAAGCCTCCTTATCTTCAAC+AGG | + | chr5_3:14806626-14806645 | Msa0801110:intron | 40.0% | |
| GAATCCTGTTGAAGATAAGG+AGG | - | chr5_3:14806633-14806652 | None:intergenic | 40.0% | |
| TAGTGTGCAGTAAGAGACTT+CGG | - | chr5_3:14806886-14806905 | None:intergenic | 40.0% | |
| CAAGGCATGAATTTACAGGA+AGG | - | chr5_3:14806921-14806940 | None:intergenic | 40.0% | |
| AAATGTGTGAAGGAGTGAAC+AGG | + | chr5_3:14807168-14807187 | Msa0801110:intron | 40.0% | |
| GTGAAACATGTTGTGAGAAC+AGG | + | chr5_3:14807190-14807209 | Msa0801110:intron | 40.0% | |
| GTTTATGAATTGGGCGATGT+GGG | - | chr5_3:14807233-14807252 | None:intergenic | 40.0% | |
| AGTTTATGAATTGGGCGATG+TGG | - | chr5_3:14807234-14807253 | None:intergenic | 40.0% | |
| CTATGCAGCTCGCATATAAA+AGG | + | chr5_3:14807257-14807276 | Msa0801110:intron | 40.0% | |
| ! | TCCGTGATTTTTACAAGGAG+AGG | - | chr5_3:14807289-14807308 | None:intergenic | 40.0% |
| TTCGCTATGTGATCATCACA+CGG | - | chr5_3:14807313-14807332 | None:intergenic | 40.0% | |
| !! | TTTTGGAAGAGTCCTCTTCA+TGG | + | chr5_3:14807396-14807415 | Msa0801110:intron | 40.0% |
| TTTGGAAGAGTCCTCTTCAT+GGG | + | chr5_3:14807397-14807416 | Msa0801110:intron | 40.0% | |
| !!! | TCCGGGGATGTTTTTTCTAA+AGG | + | chr5_3:14807534-14807553 | Msa0801110:intron | 40.0% |
| ACCTTTGTGGTCTATTTGAC+AGG | + | chr5_3:14807559-14807578 | Msa0801110:intron | 40.0% | |
| CCTTTGTGGTCTATTTGACA+GGG | + | chr5_3:14807560-14807579 | Msa0801110:intron | 40.0% | |
| CTTTGTGGTCTATTTGACAG+GGG | + | chr5_3:14807561-14807580 | Msa0801110:intron | 40.0% | |
| GGGAAGAAACAAGAAGCTTT+GGG | + | chr5_3:14807581-14807600 | Msa0801110:CDS | 40.0% | |
| !! | GTAATGATGCAGAAAGTGCT+AGG | + | chr5_3:14807603-14807622 | Msa0801110:CDS | 40.0% |
| TCAAAGTGACGCCTATTCAT+TGG | + | chr5_3:14807720-14807739 | Msa0801110:three_prime_UTR | 40.0% | |
| TATCCCTATCGCCAATGAAT+AGG | - | chr5_3:14807734-14807753 | None:intergenic | 40.0% | |
| TATTCATTGGCGATAGGGAT+AGG | + | chr5_3:14807733-14807752 | Msa0801110:three_prime_UTR | 40.0% | |
| ! | CAGCCGATTTATTTGTCTGA+TGG | + | chr5_3:14807817-14807836 | Msa0801110:three_prime_UTR | 40.0% |
| CAGCTGTAGATGATCGTTCT+CGG | - | chr5_3:14804307-14804326 | None:intergenic | 45.0% | |
| AAGCACGACCTTACTTGAAC+AGG | - | chr5_3:14804458-14804477 | None:intergenic | 45.0% | |
| GCATGAAGTTAGTCCCACAT+CGG | - | chr5_3:14804531-14804550 | None:intergenic | 45.0% | |
| CAGCTAAACAAAAGCAGCTC+TGG | + | chr5_3:14804623-14804642 | Msa0801110:intron | 45.0% | |
| ! | CTAAACAAAAGCAGCTCTGG+TGG | + | chr5_3:14804626-14804645 | Msa0801110:CDS | 45.0% |
| ! | AAACAAAAGCAGCTCTGGTG+GGG | + | chr5_3:14804628-14804647 | Msa0801110:CDS | 45.0% |
| GGCTACCGTTTCAAGAATCT+GGG | + | chr5_3:14804649-14804668 | Msa0801110:CDS | 45.0% | |
| GCTACCGTTTCAAGAATCTG+GGG | + | chr5_3:14804650-14804669 | Msa0801110:CDS | 45.0% | |
| !! | AAGAATCTGGGGCCCATTTT+CGG | + | chr5_3:14804661-14804680 | Msa0801110:CDS | 45.0% |
| ! | ACGGCAAGCCATTGTGATTT+TGG | + | chr5_3:14804815-14804834 | Msa0801110:intron | 45.0% |
| GTGGCAACATGATGTTGTTG+AGG | - | chr5_3:14804860-14804879 | None:intergenic | 45.0% | |
| AATGCACTTGCAAACCGGAA+AGG | - | chr5_3:14805632-14805651 | None:intergenic | 45.0% | |
| ! | TTCCGGTTTGCAAGTGCATT+TGG | + | chr5_3:14805632-14805651 | Msa0801110:intron | 45.0% |
| CACCAAATGCACTTGCAAAC+CGG | - | chr5_3:14805637-14805656 | None:intergenic | 45.0% | |
| ! | TTGCAAGTGCATTTGGTGAC+CGG | + | chr5_3:14805639-14805658 | Msa0801110:intron | 45.0% |
| ATAGGATAAAGCAAAGCCCC+CGG | - | chr5_3:14805661-14805680 | None:intergenic | 45.0% | |
| AACGAATGTTGCAGACTTGC+AGG | + | chr5_3:14806024-14806043 | Msa0801110:intron | 45.0% | |
| CAGGTGACTGAGTTGTGTAA+AGG | + | chr5_3:14806043-14806062 | Msa0801110:intron | 45.0% | |
| AGTCTTGAGATGTTTGGCAG+TGG | + | chr5_3:14806270-14806289 | Msa0801110:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_3:14806470-14806489 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_3:14806471-14806490 | None:intergenic | 45.0% |
| ATGCATGCACATGGAGAGTA+AGG | - | chr5_3:14806511-14806530 | None:intergenic | 45.0% | |
| ! | TTACCTTAGTGTACTGACGG+AGG | - | chr5_3:14806608-14806627 | None:intergenic | 45.0% |
| AATGCAGCTCATCTGTTGGA+CGG | + | chr5_3:14806745-14806764 | Msa0801110:intron | 45.0% | |
| ! | TTCTTTCTCCCTTTGGTGGT+TGG | - | chr5_3:14807014-14807033 | None:intergenic | 45.0% |
| ! | ACGGCTCCGTGATTTTTACA+AGG | - | chr5_3:14807294-14807313 | None:intergenic | 45.0% |
| !!! | TAGCGGCATACGCTAGTTTT+TGG | + | chr5_3:14807379-14807398 | Msa0801110:intron | 45.0% |
| TTGGAAGAGTCCTCTTCATG+GGG | + | chr5_3:14807398-14807417 | Msa0801110:intron | 45.0% | |
| CCCTGTCAAATAGACCACAA+AGG | - | chr5_3:14807563-14807582 | None:intergenic | 45.0% | |
| GGGGAAGAAACAAGAAGCTT+TGG | + | chr5_3:14807580-14807599 | Msa0801110:intron | 45.0% | |
| !! | TCTCGCTAACGTGTTTCTAG+AGG | + | chr5_3:14807641-14807660 | Msa0801110:exon | 45.0% |
| ACGCCTATTCATTGGCGATA+GGG | + | chr5_3:14807728-14807747 | Msa0801110:three_prime_UTR | 45.0% | |
| AGATGATGCGCACATCATCC+TGG | + | chr5_3:14804328-14804347 | Msa0801110:CDS | 50.0% | |
| AGACAGGAACATACGTCTGG+TGG | - | chr5_3:14804391-14804410 | None:intergenic | 50.0% | |
| AGGAGACAGGAACATACGTC+TGG | - | chr5_3:14804394-14804413 | None:intergenic | 50.0% | |
| GGGCTACCGTTTCAAGAATC+TGG | + | chr5_3:14804648-14804667 | Msa0801110:CDS | 50.0% | |
| TGGGCCCCAGATTCTTGAAA+CGG | - | chr5_3:14804657-14804676 | None:intergenic | 50.0% | |
| ! | TGCAAGTGCATTTGGTGACC+GGG | + | chr5_3:14805640-14805659 | Msa0801110:intron | 50.0% |
| ! | GACAGAAGCACGACGACAAA+AGG | - | chr5_3:14805710-14805729 | None:intergenic | 50.0% |
| TGTCGTCGTGCTTCTGTCAA+AGG | + | chr5_3:14805712-14805731 | Msa0801110:intron | 50.0% | |
| GGTGTCAGATCAGCTTATCC+TGG | + | chr5_3:14806064-14806083 | Msa0801110:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_3:14806466-14806485 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_3:14806472-14806491 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_3:14806469-14806488 | Msa0801110:intron | 50.0% | |
| ! | GTGTACTGACGGAGGTCAAT+AGG | - | chr5_3:14806600-14806619 | None:intergenic | 50.0% |
| TGACCTCCGTCAGTACACTA+AGG | + | chr5_3:14806602-14806621 | Msa0801110:intron | 50.0% | |
| GCTCAATGCAGCTCATCTGT+TGG | + | chr5_3:14806741-14806760 | Msa0801110:intron | 50.0% | |
| ACCTGTGTTCCAACCACCAA+AGG | + | chr5_3:14807002-14807021 | Msa0801110:intron | 50.0% | |
| CCTGTGTTCCAACCACCAAA+GGG | + | chr5_3:14807003-14807022 | Msa0801110:intron | 50.0% | |
| AGGCTTCTTTCTCCCTTTGG+TGG | - | chr5_3:14807018-14807037 | None:intergenic | 50.0% | |
| CAGAGGCTTCTTTCTCCCTT+TGG | - | chr5_3:14807021-14807040 | None:intergenic | 50.0% | |
| CGCTAATTGTGACGCTCACA+CGG | - | chr5_3:14807364-14807383 | None:intergenic | 50.0% | |
| CGTGTGAGCGTCACAATTAG+CGG | + | chr5_3:14807362-14807381 | Msa0801110:intron | 50.0% | |
| TGGAAGAGTCCTCTTCATGG+GGG | + | chr5_3:14807399-14807418 | Msa0801110:intron | 50.0% | |
| GACGCCTATTCATTGGCGAT+AGG | + | chr5_3:14807727-14807746 | Msa0801110:three_prime_UTR | 50.0% | |
| TAGGGATAGGTCAGTCTGAC+AGG | + | chr5_3:14807746-14807765 | Msa0801110:three_prime_UTR | 50.0% | |
| AGGGATAGGTCAGTCTGACA+GGG | + | chr5_3:14807747-14807766 | Msa0801110:three_prime_UTR | 50.0% | |
| ! | TCAGTCTGACAGGGGTTTTC+TGG | + | chr5_3:14807756-14807775 | Msa0801110:three_prime_UTR | 50.0% |
| TCAGAGCGTGATTAACGGCC+AGG | - | chr5_3:14804349-14804368 | None:intergenic | 55.0% | |
| ACGCTCTGATCACACGGTCA+TGG | + | chr5_3:14804360-14804379 | Msa0801110:CDS | 55.0% | |
| ! | GCAAGTGCATTTGGTGACCG+GGG | + | chr5_3:14805641-14805660 | Msa0801110:intron | 55.0% |
| ! | CAAGTGCATTTGGTGACCGG+GGG | + | chr5_3:14805642-14805661 | Msa0801110:intron | 55.0% |
| CATAGCCGACCCCACTTAGT+GGG | + | chr5_3:14806458-14806477 | Msa0801110:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_3:14806464-14806483 | Msa0801110:intron | 55.0% | |
| ! | CCCTTTGGTGGTTGGAACAC+AGG | - | chr5_3:14807006-14807025 | None:intergenic | 55.0% |
| GGAAGAGTCCTCTTCATGGG+GGG | + | chr5_3:14807400-14807419 | Msa0801110:intron | 55.0% | |
| GGGATAGGTCAGTCTGACAG+GGG | + | chr5_3:14807748-14807767 | Msa0801110:three_prime_UTR | 55.0% | |
| GGGGTCGGCTATGGAGAGTA+AGG | - | chr5_3:14806451-14806470 | None:intergenic | 60.0% | |
| CCACTAAGTGGGGTCGGCTA+TGG | - | chr5_3:14806460-14806479 | None:intergenic | 60.0% | |
| CCATAGCCGACCCCACTTAG+TGG | + | chr5_3:14806457-14806476 | Msa0801110:intron | 60.0% | |
| TTGCAGAGCCCCCCATGAAG+AGG | - | chr5_3:14807411-14807430 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 14804299 | 14807949 | 14804299 | ID=Msa0801110;Name=Msa0801110 |
| chr5_3 | mRNA | 14804299 | 14807949 | 14804299 | ID=Msa0801110-mRNA-1;Parent=Msa0801110;Name=Msa0801110-mRNA-1;_AED=0.27;_eAED=0.32;_QI=0|0.2|0.33|1|0|0.16|6|300|174 |
| chr5_3 | exon | 14804299 | 14804463 | 14804299 | ID=Msa0801110-mRNA-1:exon:6230;Parent=Msa0801110-mRNA-1 |
| chr5_3 | exon | 14804626 | 14804696 | 14804626 | ID=Msa0801110-mRNA-1:exon:6231;Parent=Msa0801110-mRNA-1 |
| chr5_3 | exon | 14805397 | 14805537 | 14805397 | ID=Msa0801110-mRNA-1:exon:6232;Parent=Msa0801110-mRNA-1 |
| chr5_3 | exon | 14805646 | 14805685 | 14805646 | ID=Msa0801110-mRNA-1:exon:6233;Parent=Msa0801110-mRNA-1 |
| chr5_3 | exon | 14805879 | 14805917 | 14805879 | ID=Msa0801110-mRNA-1:exon:6234;Parent=Msa0801110-mRNA-1 |
| chr5_3 | exon | 14807581 | 14807949 | 14807581 | ID=Msa0801110-mRNA-1:exon:6235;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14804299 | 14804463 | 14804299 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14804626 | 14804696 | 14804626 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14805397 | 14805537 | 14805397 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14805646 | 14805685 | 14805646 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14805879 | 14805917 | 14805879 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | CDS | 14807581 | 14807649 | 14807581 | ID=Msa0801110-mRNA-1:cds;Parent=Msa0801110-mRNA-1 |
| chr5_3 | three_prime_UTR | 14807650 | 14807949 | 14807650 | ID=Msa0801110-mRNA-1:three_prime_utr;Parent=Msa0801110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
