Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839840 | XP_003612507.1 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839840 | G7K433 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801370 | Msa0839840 | 0.991192 | 2.308348e-186 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839840 | MtrunA17_Chr5g0408321 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839840 | AT5G45310.2 | 39.943 | 353 | 175 | 5 | 2 | 348 | 5 | 326 | 3.09e-75 | 236 |
| Msa0839840 | AT5G45310.1 | 39.943 | 353 | 175 | 5 | 2 | 348 | 5 | 326 | 3.09e-75 | 236 |
Find 77 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATGCACAAAGATATT+TGG | 0.105701 | 5_4:+15163490 | Msa0839840:CDS |
| GGCACTAATTTCTGAGCTTT+TGG | 0.241486 | 5_4:+15161916 | Msa0839840:CDS |
| AGCTTCAACTGGTTCATTCT+TGG | 0.285097 | 5_4:+15163849 | Msa0839840:CDS |
| TTTGGCTAGTGTAATGTTAT+TGG | 0.303475 | 5_4:+15161934 | Msa0839840:CDS |
| GGAATTATCTCATGGACAAT+AGG | 0.312535 | 5_4:+15162082 | Msa0839840:CDS |
| TGCTTGTTTCGTCAATCTTT+CGG | 0.314282 | 5_4:-15163398 | None:intergenic |
| ATGGCATTCACAGCTCTTAC+AGG | 0.314716 | 5_4:-15162118 | None:intergenic |
| TGCTTGTTTCCTATCAGAAT+TGG | 0.320352 | 5_4:+15161989 | Msa0839840:CDS |
| TGCACTCTTTGACGGCCATT+TGG | 0.365602 | 5_4:-15163025 | None:intergenic |
| TCTGATGCACAAAGATATTT+GGG | 0.367940 | 5_4:+15163491 | Msa0839840:CDS |
| AAGGGCTTTCTCTATGCTTA+AGG | 0.373735 | 5_4:+15161961 | Msa0839840:CDS |
| GAATTATCTCATGGACAATA+GGG | 0.380019 | 5_4:+15162083 | Msa0839840:CDS |
| TTATAGTTGGAGTGACTGTC+TGG | 0.380085 | 5_4:+15163697 | Msa0839840:CDS |
| CGAAAATGAAGTTTCCCTTA+AGG | 0.380412 | 5_4:+15163464 | Msa0839840:CDS |
| AAATTCAAGGAAAGGGATAC+TGG | 0.384265 | 5_4:+15163346 | Msa0839840:CDS |
| TTCAATGTGAACATAGTATT+GGG | 0.388919 | 5_4:+15162061 | Msa0839840:CDS |
| GCAAAGAGAGCTACAATAAG+AGG | 0.394688 | 5_4:-15163741 | None:intergenic |
| GACCAAACCATGACACGGTT+TGG | 0.396411 | 5_4:+15163936 | Msa0839840:CDS |
| TTGCTTAAACTCTTGAAAAC+AGG | 0.398794 | 5_4:+15163540 | Msa0839840:CDS |
| CTTCAATGTGAACATAGTAT+TGG | 0.399293 | 5_4:+15162060 | Msa0839840:CDS |
| GTGCATCAGAAGATCCTTAA+GGG | 0.404349 | 5_4:-15163478 | None:intergenic |
| ACACTTGGACAGAGTTGGTT+AGG | 0.406960 | 5_4:+15162026 | Msa0839840:CDS |
| ACTTGAAGAGGAACATGATA+TGG | 0.426330 | 5_4:+15163073 | Msa0839840:CDS |
| TGTGCATCAGAAGATCCTTA+AGG | 0.431231 | 5_4:-15163479 | None:intergenic |
| ATAACTAATCCAATTCTGAT+AGG | 0.432440 | 5_4:-15161998 | None:intergenic |
| CCTACCCTGCCATGGAAATC+CGG | 0.436412 | 5_4:+15163435 | Msa0839840:CDS |
| GTAGCTCTCTTTGCTGTAGT+AGG | 0.438064 | 5_4:+15163750 | Msa0839840:CDS |
| ATCAGATAAACGAAAATCTT+CGG | 0.440239 | 5_4:+15163316 | Msa0839840:CDS |
| CTTCGGCTTAAAGAAATTCA+AGG | 0.445400 | 5_4:+15163333 | Msa0839840:CDS |
| GACCAAACCGTGTCATGGTT+TGG | 0.448099 | 5_4:-15163938 | None:intergenic |
| TGCCATTCAAAGGGAGAGAC+AGG | 0.479959 | 5_4:+15162135 | Msa0839840:CDS |
| CTTAAAGAAATTCAAGGAAA+GGG | 0.494237 | 5_4:+15163339 | Msa0839840:CDS |
| CCGAGATGGAGAATCTAGAA+TGG | 0.503025 | 5_4:+15162976 | Msa0839840:CDS |
| AGCTGTGAATGCCATTCAAA+GGG | 0.504731 | 5_4:+15162126 | Msa0839840:CDS |
| CTTGAAAACAGGACAAAAGT+TGG | 0.505012 | 5_4:+15163551 | Msa0839840:CDS |
| TATTTACACTTGGACAGAGT+TGG | 0.511630 | 5_4:+15162021 | Msa0839840:CDS |
| GGTTTAACAGCAGAATTAGC+AGG | 0.514236 | 5_4:-15163576 | None:intergenic |
| GATTTCCATGGCAGGGTAGG+AGG | 0.514530 | 5_4:-15163432 | None:intergenic |
| ACCAAGGGTTGCACCTATGT+TGG | 0.517963 | 5_4:+15163893 | Msa0839840:CDS |
| ACTTCAAGAACGGTTCCAAA+TGG | 0.525969 | 5_4:+15163010 | Msa0839840:CDS |
| CGTCAAAGAGTGCAAAATGA+TGG | 0.527375 | 5_4:+15163034 | Msa0839840:CDS |
| AGAGCAACTGCATCAGAAGC+AGG | 0.529915 | 5_4:-15163822 | None:intergenic |
| GCTTAAAGAAATTCAAGGAA+AGG | 0.534539 | 5_4:+15163338 | Msa0839840:CDS |
| GGTGCAACCCTTGGTAGAGT+AGG | 0.535547 | 5_4:-15163885 | None:intergenic |
| TTCCTCCTCCTACCCTGCCA+TGG | 0.536851 | 5_4:+15163427 | Msa0839840:CDS |
| AATTGAAAACTTAGAGGGAA+AGG | 0.537172 | 5_4:+15163106 | Msa0839840:CDS |
| AACCTGTCTCTCCCTTTGAA+TGG | 0.538064 | 5_4:-15162137 | None:intergenic |
| CCGGATTTCCATGGCAGGGT+AGG | 0.538868 | 5_4:-15163435 | None:intergenic |
| GATTAGTTATTATTTACACT+TGG | 0.544163 | 5_4:+15162011 | Msa0839840:CDS |
| TTCCATGGCAGGGTAGGAGG+AGG | 0.544208 | 5_4:-15163429 | None:intergenic |
| GAGCTGTGAATGCCATTCAA+AGG | 0.544742 | 5_4:+15162125 | Msa0839840:CDS |
| CCATTCTAGATTCTCCATCT+CGG | 0.547457 | 5_4:-15162976 | None:intergenic |
| TAGTATTGGGAATTATCTCA+TGG | 0.552447 | 5_4:+15162074 | Msa0839840:CDS |
| GCCAACATAGGTGCAACCCT+TGG | 0.553415 | 5_4:-15163894 | None:intergenic |
| TGTAACCGGATTTCCATGGC+AGG | 0.554763 | 5_4:-15163440 | None:intergenic |
| GCTACAATAAGAGGCATGCA+AGG | 0.561076 | 5_4:-15163732 | None:intergenic |
| GTGCAACCCTTGGTAGAGTA+GGG | 0.566951 | 5_4:-15163884 | None:intergenic |
| TTTCAAGAGTTTAAGCAACT+CGG | 0.570856 | 5_4:-15163535 | None:intergenic |
| GGCTTTCTCTATGCTTAAGG+AGG | 0.571686 | 5_4:+15161964 | Msa0839840:CDS |
| TCATCGAATGCAGACCGAGA+TGG | 0.575325 | 5_4:+15162962 | Msa0839840:CDS |
| AACCTACCCTACTCTACCAA+GGG | 0.583818 | 5_4:+15163878 | Msa0839840:CDS |
| GCTACTAGCAGAACTTGAAG+AGG | 0.585655 | 5_4:+15163061 | Msa0839840:CDS |
| ATTGCGAAATTGCAACATCT+CGG | 0.589655 | 5_4:-15163650 | None:intergenic |
| TAACCTACCCTACTCTACCA+AGG | 0.597374 | 5_4:+15163877 | Msa0839840:CDS |
| TGTAATGTTATTGGTGACAA+GGG | 0.597568 | 5_4:+15161943 | Msa0839840:CDS |
| TCGCTGTAACCGGATTTCCA+TGG | 0.601134 | 5_4:-15163444 | None:intergenic |
| TGGTCTAAACGTAACACTAG+TGG | 0.603705 | 5_4:-15163918 | None:intergenic |
| GTGTAATGTTATTGGTGACA+AGG | 0.611263 | 5_4:+15161942 | Msa0839840:CDS |
| TATAGTTGGAGTGACTGTCT+GGG | 0.611721 | 5_4:+15163698 | Msa0839840:CDS |
| AGCAGAACAAACTTCAAGAA+CGG | 0.621236 | 5_4:+15163000 | Msa0839840:CDS |
| TAAGAGACCAAACCGTGTCA+TGG | 0.627227 | 5_4:-15163943 | None:intergenic |
| AACCCTTGGTAGAGTAGGGT+AGG | 0.643864 | 5_4:-15163880 | None:intergenic |
| AACACTAGTGGAGCCAACAT+AGG | 0.645966 | 5_4:-15163906 | None:intergenic |
| CTACAATAAGAGGCATGCAA+GGG | 0.653280 | 5_4:-15163731 | None:intergenic |
| AAGATTGACGAAACAAGCAA+TGG | 0.657302 | 5_4:+15163402 | Msa0839840:CDS |
| GTTTAGACCAAACCATGACA+CGG | 0.684382 | 5_4:+15163931 | Msa0839840:CDS |
| GTAACCGGATTTCCATGGCA+GGG | 0.689857 | 5_4:-15163439 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATGATTAATTG+GGG | + | chr5_4:15162234-15162253 | Msa0839840:intron | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | - | chr5_4:15162646-15162665 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | + | chr5_4:15162648-15162667 | Msa0839840:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | + | chr5_4:15162649-15162668 | Msa0839840:intron | 10.0% |
| !! | AAATATTATATGATTAATTG+GGG | + | chr5_4:15162234-15162253 | Msa0839840:intron | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | - | chr5_4:15162646-15162665 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | + | chr5_4:15162648-15162667 | Msa0839840:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | + | chr5_4:15162649-15162668 | Msa0839840:intron | 10.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | + | chr5_4:15162452-15162471 | Msa0839840:intron | 15.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | + | chr5_4:15162452-15162471 | Msa0839840:intron | 15.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | + | chr5_4:15162011-15162030 | Msa0839840:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | - | chr5_4:15162207-15162226 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | - | chr5_4:15162208-15162227 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | - | chr5_4:15162316-15162335 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | + | chr5_4:15162451-15162470 | Msa0839840:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | - | chr5_4:15162823-15162842 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | - | chr5_4:15163099-15163118 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | - | chr5_4:15163263-15163282 | None:intergenic | 20.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | + | chr5_4:15162011-15162030 | Msa0839840:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | - | chr5_4:15162207-15162226 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | - | chr5_4:15162208-15162227 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | - | chr5_4:15162316-15162335 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | + | chr5_4:15162451-15162470 | Msa0839840:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | - | chr5_4:15162823-15162842 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | - | chr5_4:15163099-15163118 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | - | chr5_4:15163263-15163282 | None:intergenic | 20.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | - | chr5_4:15162001-15162020 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACATAGTATT+GGG | + | chr5_4:15162061-15162080 | Msa0839840:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | + | chr5_4:15162320-15162339 | Msa0839840:intron | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | - | chr5_4:15162342-15162361 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | + | chr5_4:15162476-15162495 | Msa0839840:intron | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | + | chr5_4:15162676-15162695 | Msa0839840:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | + | chr5_4:15163100-15163119 | Msa0839840:CDS | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | + | chr5_4:15163101-15163120 | Msa0839840:CDS | 25.0% |
| ! | AAATTGATGTACAAGTTACA+AGG | - | chr5_4:15163157-15163176 | None:intergenic | 25.0% |
| ! | ATCAGATAAACGAAAATCTT+CGG | + | chr5_4:15163316-15163335 | Msa0839840:CDS | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | + | chr5_4:15163339-15163358 | Msa0839840:CDS | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | - | chr5_4:15163376-15163395 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | - | chr5_4:15163606-15163625 | None:intergenic | 25.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | - | chr5_4:15162001-15162020 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACATAGTATT+GGG | + | chr5_4:15162061-15162080 | Msa0839840:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | + | chr5_4:15162320-15162339 | Msa0839840:intron | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | - | chr5_4:15162342-15162361 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | + | chr5_4:15162476-15162495 | Msa0839840:intron | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | + | chr5_4:15162676-15162695 | Msa0839840:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | + | chr5_4:15163100-15163119 | Msa0839840:CDS | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | + | chr5_4:15163101-15163120 | Msa0839840:CDS | 25.0% |
| ! | AAATTGATGTACAAGTTACA+AGG | - | chr5_4:15163157-15163176 | None:intergenic | 25.0% |
| ! | ATCAGATAAACGAAAATCTT+CGG | + | chr5_4:15163316-15163335 | Msa0839840:CDS | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | + | chr5_4:15163339-15163358 | Msa0839840:CDS | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | - | chr5_4:15163376-15163395 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | - | chr5_4:15163606-15163625 | None:intergenic | 25.0% |
| TTTGGCTAGTGTAATGTTAT+TGG | + | chr5_4:15161934-15161953 | Msa0839840:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | + | chr5_4:15161943-15161962 | Msa0839840:CDS | 30.0% |
| CTTCAATGTGAACATAGTAT+TGG | + | chr5_4:15162060-15162079 | Msa0839840:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | + | chr5_4:15162074-15162093 | Msa0839840:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | + | chr5_4:15162083-15162102 | Msa0839840:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | + | chr5_4:15162241-15162260 | Msa0839840:intron | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | + | chr5_4:15162339-15162358 | Msa0839840:intron | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | - | chr5_4:15162478-15162497 | None:intergenic | 30.0% |
| ! | TAAAGTGAGAACACATTTTC+AGG | + | chr5_4:15162504-15162523 | Msa0839840:intron | 30.0% |
| AAGACACATGAGATGTAATA+TGG | - | chr5_4:15162530-15162549 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | + | chr5_4:15162537-15162556 | Msa0839840:intron | 30.0% |
| TGGTGCGTGAATATAAATAT+TGG | + | chr5_4:15162599-15162618 | Msa0839840:intron | 30.0% | |
| GGTGCGTGAATATAAATATT+GGG | + | chr5_4:15162600-15162619 | Msa0839840:intron | 30.0% | |
| ! | ACATAGGAAACAGTTCATTT+TGG | + | chr5_4:15162778-15162797 | Msa0839840:intron | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | + | chr5_4:15163106-15163125 | Msa0839840:CDS | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | - | chr5_4:15163196-15163215 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | + | chr5_4:15163338-15163357 | Msa0839840:CDS | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | + | chr5_4:15163490-15163509 | Msa0839840:CDS | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | + | chr5_4:15163491-15163510 | Msa0839840:CDS | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | - | chr5_4:15163538-15163557 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | + | chr5_4:15163540-15163559 | Msa0839840:CDS | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | - | chr5_4:15163600-15163619 | None:intergenic | 30.0% |
| TTTGGCTAGTGTAATGTTAT+TGG | + | chr5_4:15161934-15161953 | Msa0839840:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | + | chr5_4:15161943-15161962 | Msa0839840:CDS | 30.0% |
| CTTCAATGTGAACATAGTAT+TGG | + | chr5_4:15162060-15162079 | Msa0839840:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | + | chr5_4:15162074-15162093 | Msa0839840:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | + | chr5_4:15162083-15162102 | Msa0839840:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | + | chr5_4:15162241-15162260 | Msa0839840:intron | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | + | chr5_4:15162339-15162358 | Msa0839840:intron | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | - | chr5_4:15162478-15162497 | None:intergenic | 30.0% |
| ! | TAAAGTGAGAACACATTTTC+AGG | + | chr5_4:15162504-15162523 | Msa0839840:intron | 30.0% |
| AAGACACATGAGATGTAATA+TGG | - | chr5_4:15162530-15162549 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | + | chr5_4:15162537-15162556 | Msa0839840:intron | 30.0% |
| TGGTGCGTGAATATAAATAT+TGG | + | chr5_4:15162599-15162618 | Msa0839840:intron | 30.0% | |
| GGTGCGTGAATATAAATATT+GGG | + | chr5_4:15162600-15162619 | Msa0839840:intron | 30.0% | |
| ! | ACATAGGAAACAGTTCATTT+TGG | + | chr5_4:15162778-15162797 | Msa0839840:intron | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | + | chr5_4:15163106-15163125 | Msa0839840:CDS | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | - | chr5_4:15163196-15163215 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | + | chr5_4:15163338-15163357 | Msa0839840:CDS | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | + | chr5_4:15163490-15163509 | Msa0839840:CDS | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | + | chr5_4:15163491-15163510 | Msa0839840:CDS | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | - | chr5_4:15163538-15163557 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | + | chr5_4:15163540-15163559 | Msa0839840:CDS | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | - | chr5_4:15163600-15163619 | None:intergenic | 30.0% |
| ! | GTGTAATGTTATTGGTGACA+AGG | + | chr5_4:15161942-15161961 | Msa0839840:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | + | chr5_4:15161989-15162008 | Msa0839840:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | + | chr5_4:15162021-15162040 | Msa0839840:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | + | chr5_4:15162082-15162101 | Msa0839840:CDS | 35.0% | |
| GTGTTCTCACTTTACAAATC+CGG | - | chr5_4:15162498-15162517 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | + | chr5_4:15162690-15162709 | Msa0839840:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | - | chr5_4:15162730-15162749 | None:intergenic | 35.0% |
| TTTCCTATGTAGCAGCTATT+GGG | - | chr5_4:15162768-15162787 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | + | chr5_4:15162828-15162847 | Msa0839840:intron | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | - | chr5_4:15162833-15162852 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | + | chr5_4:15162832-15162851 | Msa0839840:intron | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | - | chr5_4:15162887-15162906 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | + | chr5_4:15163000-15163019 | Msa0839840:CDS | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | - | chr5_4:15163036-15163055 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | + | chr5_4:15163073-15163092 | Msa0839840:CDS | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | - | chr5_4:15163192-15163211 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | + | chr5_4:15163293-15163312 | Msa0839840:intron | 35.0% | |
| CTTCGGCTTAAAGAAATTCA+AGG | + | chr5_4:15163333-15163352 | Msa0839840:CDS | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | + | chr5_4:15163346-15163365 | Msa0839840:CDS | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | - | chr5_4:15163401-15163420 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | + | chr5_4:15163402-15163421 | Msa0839840:CDS | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | - | chr5_4:15163457-15163476 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | + | chr5_4:15163464-15163483 | Msa0839840:CDS | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | + | chr5_4:15163551-15163570 | Msa0839840:CDS | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | - | chr5_4:15163653-15163672 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | + | chr5_4:15163838-15163857 | Msa0839840:CDS | 35.0% |
| ! | GTGTAATGTTATTGGTGACA+AGG | + | chr5_4:15161942-15161961 | Msa0839840:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | + | chr5_4:15161989-15162008 | Msa0839840:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | + | chr5_4:15162021-15162040 | Msa0839840:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | + | chr5_4:15162082-15162101 | Msa0839840:CDS | 35.0% | |
| GTGTTCTCACTTTACAAATC+CGG | - | chr5_4:15162498-15162517 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | + | chr5_4:15162690-15162709 | Msa0839840:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | - | chr5_4:15162730-15162749 | None:intergenic | 35.0% |
| TTTCCTATGTAGCAGCTATT+GGG | - | chr5_4:15162768-15162787 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | + | chr5_4:15162828-15162847 | Msa0839840:intron | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | - | chr5_4:15162833-15162852 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | + | chr5_4:15162832-15162851 | Msa0839840:intron | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | - | chr5_4:15162887-15162906 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | + | chr5_4:15163000-15163019 | Msa0839840:CDS | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | - | chr5_4:15163036-15163055 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | + | chr5_4:15163073-15163092 | Msa0839840:CDS | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | - | chr5_4:15163192-15163211 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | + | chr5_4:15163293-15163312 | Msa0839840:intron | 35.0% | |
| CTTCGGCTTAAAGAAATTCA+AGG | + | chr5_4:15163333-15163352 | Msa0839840:CDS | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | + | chr5_4:15163346-15163365 | Msa0839840:CDS | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | - | chr5_4:15163401-15163420 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | + | chr5_4:15163402-15163421 | Msa0839840:CDS | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | - | chr5_4:15163457-15163476 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | + | chr5_4:15163464-15163483 | Msa0839840:CDS | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | + | chr5_4:15163551-15163570 | Msa0839840:CDS | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | - | chr5_4:15163653-15163672 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | + | chr5_4:15163838-15163857 | Msa0839840:CDS | 35.0% |
| ! | GGCACTAATTTCTGAGCTTT+TGG | + | chr5_4:15161916-15161935 | Msa0839840:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | + | chr5_4:15161961-15161980 | Msa0839840:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | + | chr5_4:15162126-15162145 | Msa0839840:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | - | chr5_4:15162381-15162400 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | + | chr5_4:15162379-15162398 | Msa0839840:intron | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | + | chr5_4:15162409-15162428 | Msa0839840:intron | 40.0% | |
| TTGGGTAGTCCTGAATGTAT+AGG | + | chr5_4:15162618-15162637 | Msa0839840:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | + | chr5_4:15162724-15162743 | Msa0839840:intron | 40.0% |
| TTTCCCAATAGCTGCTACAT+AGG | + | chr5_4:15162762-15162781 | Msa0839840:intron | 40.0% | |
| GTTTCCTATGTAGCAGCTAT+TGG | - | chr5_4:15162769-15162788 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | - | chr5_4:15162923-15162942 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | - | chr5_4:15162924-15162943 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | + | chr5_4:15162929-15162948 | Msa0839840:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | - | chr5_4:15162979-15162998 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | + | chr5_4:15163010-15163029 | Msa0839840:CDS | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | + | chr5_4:15163034-15163053 | Msa0839840:CDS | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | - | chr5_4:15163153-15163172 | None:intergenic | 40.0% | |
| GTACATCAATTTATCTGCCC+AGG | + | chr5_4:15163165-15163184 | Msa0839840:intron | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | + | chr5_4:15163292-15163311 | Msa0839840:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | - | chr5_4:15163481-15163500 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | - | chr5_4:15163482-15163501 | None:intergenic | 40.0% | |
| GGTTTAACAGCAGAATTAGC+AGG | - | chr5_4:15163579-15163598 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | + | chr5_4:15163665-15163684 | Msa0839840:CDS | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | + | chr5_4:15163684-15163703 | Msa0839840:CDS | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | + | chr5_4:15163697-15163716 | Msa0839840:CDS | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | + | chr5_4:15163698-15163717 | Msa0839840:CDS | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | - | chr5_4:15163734-15163753 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | - | chr5_4:15163744-15163763 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | + | chr5_4:15163849-15163868 | Msa0839840:CDS | 40.0% |
| TGGTCTAAACGTAACACTAG+TGG | - | chr5_4:15163921-15163940 | None:intergenic | 40.0% | |
| GTTTAGACCAAACCATGACA+CGG | + | chr5_4:15163931-15163950 | Msa0839840:CDS | 40.0% | |
| ! | GGCACTAATTTCTGAGCTTT+TGG | + | chr5_4:15161916-15161935 | Msa0839840:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | + | chr5_4:15161961-15161980 | Msa0839840:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | + | chr5_4:15162126-15162145 | Msa0839840:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | - | chr5_4:15162381-15162400 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | + | chr5_4:15162379-15162398 | Msa0839840:intron | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | + | chr5_4:15162409-15162428 | Msa0839840:intron | 40.0% | |
| TTGGGTAGTCCTGAATGTAT+AGG | + | chr5_4:15162618-15162637 | Msa0839840:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | + | chr5_4:15162724-15162743 | Msa0839840:intron | 40.0% |
| TTTCCCAATAGCTGCTACAT+AGG | + | chr5_4:15162762-15162781 | Msa0839840:intron | 40.0% | |
| GTTTCCTATGTAGCAGCTAT+TGG | - | chr5_4:15162769-15162788 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | - | chr5_4:15162923-15162942 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | - | chr5_4:15162924-15162943 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | + | chr5_4:15162929-15162948 | Msa0839840:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | - | chr5_4:15162979-15162998 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | + | chr5_4:15163010-15163029 | Msa0839840:CDS | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | + | chr5_4:15163034-15163053 | Msa0839840:CDS | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | - | chr5_4:15163153-15163172 | None:intergenic | 40.0% | |
| GTACATCAATTTATCTGCCC+AGG | + | chr5_4:15163165-15163184 | Msa0839840:intron | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | + | chr5_4:15163292-15163311 | Msa0839840:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | - | chr5_4:15163481-15163500 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | - | chr5_4:15163482-15163501 | None:intergenic | 40.0% | |
| GGTTTAACAGCAGAATTAGC+AGG | - | chr5_4:15163579-15163598 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | + | chr5_4:15163665-15163684 | Msa0839840:CDS | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | + | chr5_4:15163684-15163703 | Msa0839840:CDS | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | + | chr5_4:15163697-15163716 | Msa0839840:CDS | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | + | chr5_4:15163698-15163717 | Msa0839840:CDS | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | - | chr5_4:15163734-15163753 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | - | chr5_4:15163744-15163763 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | + | chr5_4:15163849-15163868 | Msa0839840:CDS | 40.0% |
| TGGTCTAAACGTAACACTAG+TGG | - | chr5_4:15163921-15163940 | None:intergenic | 40.0% | |
| GTTTAGACCAAACCATGACA+CGG | + | chr5_4:15163931-15163950 | Msa0839840:CDS | 40.0% | |
| GGCTTTCTCTATGCTTAAGG+AGG | + | chr5_4:15161964-15161983 | Msa0839840:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | + | chr5_4:15162026-15162045 | Msa0839840:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | - | chr5_4:15162121-15162140 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | + | chr5_4:15162125-15162144 | Msa0839840:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | - | chr5_4:15162140-15162159 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | + | chr5_4:15162287-15162306 | Msa0839840:intron | 45.0% |
| GTATCGGAGCCTATACATTC+AGG | - | chr5_4:15162630-15162649 | None:intergenic | 45.0% | |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | + | chr5_4:15162837-15162856 | Msa0839840:intron | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | - | chr5_4:15162904-15162923 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | + | chr5_4:15162905-15162924 | Msa0839840:intron | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | + | chr5_4:15162906-15162925 | Msa0839840:intron | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | - | chr5_4:15162936-15162955 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | + | chr5_4:15162976-15162995 | Msa0839840:CDS | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | + | chr5_4:15163061-15163080 | Msa0839840:CDS | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | - | chr5_4:15163735-15163754 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | + | chr5_4:15163750-15163769 | Msa0839840:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | + | chr5_4:15163877-15163896 | Msa0839840:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | + | chr5_4:15163878-15163897 | Msa0839840:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | - | chr5_4:15163909-15163928 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | - | chr5_4:15163946-15163965 | None:intergenic | 45.0% | |
| GGCTTTCTCTATGCTTAAGG+AGG | + | chr5_4:15161964-15161983 | Msa0839840:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | + | chr5_4:15162026-15162045 | Msa0839840:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | - | chr5_4:15162121-15162140 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | + | chr5_4:15162125-15162144 | Msa0839840:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | - | chr5_4:15162140-15162159 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | + | chr5_4:15162287-15162306 | Msa0839840:intron | 45.0% |
| GTATCGGAGCCTATACATTC+AGG | - | chr5_4:15162630-15162649 | None:intergenic | 45.0% | |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | + | chr5_4:15162837-15162856 | Msa0839840:intron | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | - | chr5_4:15162904-15162923 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | + | chr5_4:15162905-15162924 | Msa0839840:intron | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | + | chr5_4:15162906-15162925 | Msa0839840:intron | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | - | chr5_4:15162936-15162955 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | + | chr5_4:15162976-15162995 | Msa0839840:CDS | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | + | chr5_4:15163061-15163080 | Msa0839840:CDS | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | - | chr5_4:15163735-15163754 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | + | chr5_4:15163750-15163769 | Msa0839840:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | + | chr5_4:15163877-15163896 | Msa0839840:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | + | chr5_4:15163878-15163897 | Msa0839840:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | - | chr5_4:15163909-15163928 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | - | chr5_4:15163946-15163965 | None:intergenic | 45.0% | |
| !! | TAAAATATTATATGATTAAT+TGG | + | chr5_4:15162232-15162251 | Msa0839840:intron | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | + | chr5_4:15162233-15162252 | Msa0839840:intron | 5.0% |
| !! | TAAAATATTATATGATTAAT+TGG | + | chr5_4:15162232-15162251 | Msa0839840:intron | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | + | chr5_4:15162233-15162252 | Msa0839840:intron | 5.0% |
| TGCCATTCAAAGGGAGAGAC+AGG | + | chr5_4:15162135-15162154 | Msa0839840:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | - | chr5_4:15162431-15162450 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | - | chr5_4:15162435-15162454 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | + | chr5_4:15162962-15162981 | Msa0839840:CDS | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | - | chr5_4:15163028-15163047 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | - | chr5_4:15163146-15163165 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | - | chr5_4:15163442-15163461 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | - | chr5_4:15163443-15163462 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | - | chr5_4:15163447-15163466 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | - | chr5_4:15163825-15163844 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | - | chr5_4:15163883-15163902 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | - | chr5_4:15163887-15163906 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | + | chr5_4:15163893-15163912 | Msa0839840:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | + | chr5_4:15163936-15163955 | Msa0839840:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | - | chr5_4:15163941-15163960 | None:intergenic | 50.0% | |
| TGCCATTCAAAGGGAGAGAC+AGG | + | chr5_4:15162135-15162154 | Msa0839840:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | - | chr5_4:15162431-15162450 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | - | chr5_4:15162435-15162454 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | + | chr5_4:15162962-15162981 | Msa0839840:CDS | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | - | chr5_4:15163028-15163047 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | - | chr5_4:15163146-15163165 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | - | chr5_4:15163442-15163461 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | - | chr5_4:15163443-15163462 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | - | chr5_4:15163447-15163466 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | - | chr5_4:15163825-15163844 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | - | chr5_4:15163883-15163902 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | - | chr5_4:15163887-15163906 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | + | chr5_4:15163893-15163912 | Msa0839840:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | + | chr5_4:15163936-15163955 | Msa0839840:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | - | chr5_4:15163941-15163960 | None:intergenic | 50.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | - | chr5_4:15162919-15162938 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | - | chr5_4:15163185-15163204 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | - | chr5_4:15163186-15163205 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | - | chr5_4:15163435-15163454 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | + | chr5_4:15163435-15163454 | Msa0839840:CDS | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | - | chr5_4:15163888-15163907 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | - | chr5_4:15163897-15163916 | None:intergenic | 55.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | - | chr5_4:15162919-15162938 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | - | chr5_4:15163185-15163204 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | - | chr5_4:15163186-15163205 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | - | chr5_4:15163435-15163454 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | + | chr5_4:15163435-15163454 | Msa0839840:CDS | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | - | chr5_4:15163888-15163907 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | - | chr5_4:15163897-15163916 | None:intergenic | 55.0% | |
| TTCCCAATGCACCTCACGCC+CGG | + | chr5_4:15162563-15162582 | Msa0839840:intron | 60.0% | |
| CACCAAGCCCAGTAAGTGCC+GGG | - | chr5_4:15162584-15162603 | None:intergenic | 60.0% | |
| GCACCAAGCCCAGTAAGTGC+CGG | - | chr5_4:15162585-15162604 | None:intergenic | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | + | chr5_4:15163427-15163446 | Msa0839840:CDS | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | - | chr5_4:15163432-15163451 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | - | chr5_4:15163438-15163457 | None:intergenic | 60.0% | |
| TTCCCAATGCACCTCACGCC+CGG | + | chr5_4:15162563-15162582 | Msa0839840:intron | 60.0% | |
| CACCAAGCCCAGTAAGTGCC+GGG | - | chr5_4:15162584-15162603 | None:intergenic | 60.0% | |
| GCACCAAGCCCAGTAAGTGC+CGG | - | chr5_4:15162585-15162604 | None:intergenic | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | + | chr5_4:15163427-15163446 | Msa0839840:CDS | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | - | chr5_4:15163432-15163451 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | - | chr5_4:15163438-15163457 | None:intergenic | 60.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | - | chr5_4:15162568-15162587 | None:intergenic | 65.0% | |
| ACCTCACGCCCGGCACTTAC+TGG | + | chr5_4:15162573-15162592 | Msa0839840:intron | 65.0% | |
| CCTCACGCCCGGCACTTACT+GGG | + | chr5_4:15162574-15162593 | Msa0839840:intron | 65.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | - | chr5_4:15162568-15162587 | None:intergenic | 65.0% | |
| ACCTCACGCCCGGCACTTAC+TGG | + | chr5_4:15162573-15162592 | Msa0839840:intron | 65.0% | |
| CCTCACGCCCGGCACTTACT+GGG | + | chr5_4:15162574-15162593 | Msa0839840:intron | 65.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | - | chr5_4:15162569-15162588 | None:intergenic | 70.0% | |
| !! | CCCAGTAAGTGCCGGGCGTG+AGG | - | chr5_4:15162577-15162596 | None:intergenic | 70.0% |
| CGCCCGGCACTTACTGGGCT+TGG | + | chr5_4:15162579-15162598 | Msa0839840:intron | 70.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | - | chr5_4:15162569-15162588 | None:intergenic | 70.0% | |
| !! | CCCAGTAAGTGCCGGGCGTG+AGG | - | chr5_4:15162577-15162596 | None:intergenic | 70.0% |
| CGCCCGGCACTTACTGGGCT+TGG | + | chr5_4:15162579-15162598 | Msa0839840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 15161914 | 15163977 | 15161914 | ID=Msa0839840;Name=Msa0839840 |
| chr5_4 | mRNA | 15161914 | 15163977 | 15161914 | ID=Msa0839840-mRNA-1;Parent=Msa0839840;Name=Msa0839840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.33|1|1|1|3|0|363 |
| chr5_4 | exon | 15161914 | 15162156 | 15161914 | ID=Msa0839840-mRNA-1:exon:6563;Parent=Msa0839840-mRNA-1 |
| chr5_4 | exon | 15162948 | 15163127 | 15162948 | ID=Msa0839840-mRNA-1:exon:6564;Parent=Msa0839840-mRNA-1 |
| chr5_4 | exon | 15163309 | 15163977 | 15163309 | ID=Msa0839840-mRNA-1:exon:6565;Parent=Msa0839840-mRNA-1 |
| chr5_4 | CDS | 15161914 | 15162156 | 15161914 | ID=Msa0839840-mRNA-1:cds;Parent=Msa0839840-mRNA-1 |
| chr5_4 | CDS | 15162948 | 15163127 | 15162948 | ID=Msa0839840-mRNA-1:cds;Parent=Msa0839840-mRNA-1 |
| chr5_4 | CDS | 15163309 | 15163977 | 15163309 | ID=Msa0839840-mRNA-1:cds;Parent=Msa0839840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
