Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801370 | XP_003612507.1 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801370 | G7K433 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077910 | Msa0801370 | 0.804629 | 1.970422e-49 | -8.615850e-47 |
| Msa0801370 | Msa0839840 | 0.991192 | 2.308348e-186 | -8.615850e-47 |
| Msa0125800 | Msa0801370 | 0.805443 | 1.331810e-49 | -8.615850e-47 |
| Msa0170440 | Msa0801370 | 0.807269 | 5.488722e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801370 | MtrunA17_Chr5g0408321 | 93.681 | 364 | 21 | 2 | 1 | 363 | 1 | 363 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801370 | AT5G45310.2 | 39.943 | 353 | 175 | 5 | 2 | 348 | 5 | 326 | 3.09e-75 | 236 |
| Msa0801370 | AT5G45310.1 | 39.943 | 353 | 175 | 5 | 2 | 348 | 5 | 326 | 3.09e-75 | 236 |
Find 77 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATGCACAAAGATATT+TGG | 0.105701 | 5_3:+15171476 | Msa0801370:CDS |
| GGCACTAATTTCTGAGCTTT+TGG | 0.241486 | 5_3:+15169912 | Msa0801370:CDS |
| AGCTTCAACTGGTTCATTCT+TGG | 0.285097 | 5_3:+15171835 | Msa0801370:CDS |
| TTTGGCTAGTGTAATGTTAT+TGG | 0.303475 | 5_3:+15169930 | Msa0801370:CDS |
| GGAATTATCTCATGGACAAT+AGG | 0.312535 | 5_3:+15170078 | Msa0801370:CDS |
| TGCTTGTTTCGTCAATCTTT+CGG | 0.314282 | 5_3:-15171384 | None:intergenic |
| ATGGCATTCACAGCTCTTAC+AGG | 0.314716 | 5_3:-15170114 | None:intergenic |
| TGCTTGTTTCCTATCAGAAT+TGG | 0.320352 | 5_3:+15169985 | Msa0801370:CDS |
| TGCACTCTTTGACGGCCATT+TGG | 0.365602 | 5_3:-15171011 | None:intergenic |
| TCTGATGCACAAAGATATTT+GGG | 0.367940 | 5_3:+15171477 | Msa0801370:CDS |
| AAGGGCTTTCTCTATGCTTA+AGG | 0.373735 | 5_3:+15169957 | Msa0801370:CDS |
| GAATTATCTCATGGACAATA+GGG | 0.380019 | 5_3:+15170079 | Msa0801370:CDS |
| TTATAGTTGGAGTGACTGTC+TGG | 0.380085 | 5_3:+15171683 | Msa0801370:CDS |
| CGAAAATGAAGTTTCCCTTA+AGG | 0.380412 | 5_3:+15171450 | Msa0801370:CDS |
| AAATTCAAGGAAAGGGATAC+TGG | 0.384265 | 5_3:+15171332 | Msa0801370:CDS |
| TTCAATGTGAACATAGTATT+GGG | 0.388919 | 5_3:+15170057 | Msa0801370:CDS |
| GCAAAGAGAGCTACAATAAG+AGG | 0.394688 | 5_3:-15171727 | None:intergenic |
| GACCAAACCATGACACGGTT+TGG | 0.396411 | 5_3:+15171922 | Msa0801370:CDS |
| TTGCTTAAACTCTTGAAAAC+AGG | 0.398794 | 5_3:+15171526 | Msa0801370:CDS |
| CTTCAATGTGAACATAGTAT+TGG | 0.399293 | 5_3:+15170056 | Msa0801370:CDS |
| GTGCATCAGAAGATCCTTAA+GGG | 0.404349 | 5_3:-15171464 | None:intergenic |
| ACACTTGGACAGAGTTGGTT+AGG | 0.406960 | 5_3:+15170022 | Msa0801370:CDS |
| ACTTGAAGAGGAACATGATA+TGG | 0.426330 | 5_3:+15171059 | Msa0801370:CDS |
| TGTGCATCAGAAGATCCTTA+AGG | 0.431231 | 5_3:-15171465 | None:intergenic |
| ATAACTAATCCAATTCTGAT+AGG | 0.432440 | 5_3:-15169994 | None:intergenic |
| CCTACCCTGCCATGGAAATC+CGG | 0.436412 | 5_3:+15171421 | Msa0801370:CDS |
| GTAGCTCTCTTTGCTGTAGT+AGG | 0.438064 | 5_3:+15171736 | Msa0801370:CDS |
| ATCAGATAAACGAAAATCTT+CGG | 0.440239 | 5_3:+15171302 | Msa0801370:CDS |
| CTTCGGCTTAAAGAAATTCA+AGG | 0.445400 | 5_3:+15171319 | Msa0801370:CDS |
| GACCAAACCGTGTCATGGTT+TGG | 0.448099 | 5_3:-15171924 | None:intergenic |
| TGCCATTCAAAGGGAGAGAC+AGG | 0.479959 | 5_3:+15170131 | Msa0801370:CDS |
| CTTAAAGAAATTCAAGGAAA+GGG | 0.494237 | 5_3:+15171325 | Msa0801370:CDS |
| CCGAGATGGAGAATCTAGAA+TGG | 0.503025 | 5_3:+15170962 | Msa0801370:CDS |
| AGCTGTGAATGCCATTCAAA+GGG | 0.504731 | 5_3:+15170122 | Msa0801370:CDS |
| CTTGAAAACAGGACAAAAGT+TGG | 0.505012 | 5_3:+15171537 | Msa0801370:CDS |
| TATTTACACTTGGACAGAGT+TGG | 0.511630 | 5_3:+15170017 | Msa0801370:CDS |
| GGTTTAACAGCAGAATTAGC+AGG | 0.514236 | 5_3:-15171562 | None:intergenic |
| GATTTCCATGGCAGGGTAGG+AGG | 0.514530 | 5_3:-15171418 | None:intergenic |
| ACCAAGGGTTGCACCTATGT+TGG | 0.517963 | 5_3:+15171879 | Msa0801370:CDS |
| ACTTCAAGAACGGTTCCAAA+TGG | 0.525969 | 5_3:+15170996 | Msa0801370:CDS |
| CGTCAAAGAGTGCAAAATGA+TGG | 0.527375 | 5_3:+15171020 | Msa0801370:CDS |
| AGAGCAACTGCATCAGAAGC+AGG | 0.529915 | 5_3:-15171808 | None:intergenic |
| GCTTAAAGAAATTCAAGGAA+AGG | 0.534539 | 5_3:+15171324 | Msa0801370:CDS |
| GGTGCAACCCTTGGTAGAGT+AGG | 0.535547 | 5_3:-15171871 | None:intergenic |
| TTCCTCCTCCTACCCTGCCA+TGG | 0.536851 | 5_3:+15171413 | Msa0801370:CDS |
| AATTGAAAACTTAGAGGGAA+AGG | 0.537172 | 5_3:+15171092 | Msa0801370:CDS |
| AACCTGTCTCTCCCTTTGAA+TGG | 0.538064 | 5_3:-15170133 | None:intergenic |
| CCGGATTTCCATGGCAGGGT+AGG | 0.538868 | 5_3:-15171421 | None:intergenic |
| GATTAGTTATTATTTACACT+TGG | 0.544163 | 5_3:+15170007 | Msa0801370:CDS |
| TTCCATGGCAGGGTAGGAGG+AGG | 0.544208 | 5_3:-15171415 | None:intergenic |
| GAGCTGTGAATGCCATTCAA+AGG | 0.544742 | 5_3:+15170121 | Msa0801370:CDS |
| CCATTCTAGATTCTCCATCT+CGG | 0.547457 | 5_3:-15170962 | None:intergenic |
| TAGTATTGGGAATTATCTCA+TGG | 0.552447 | 5_3:+15170070 | Msa0801370:CDS |
| GCCAACATAGGTGCAACCCT+TGG | 0.553415 | 5_3:-15171880 | None:intergenic |
| TGTAACCGGATTTCCATGGC+AGG | 0.554763 | 5_3:-15171426 | None:intergenic |
| GCTACAATAAGAGGCATGCA+AGG | 0.561076 | 5_3:-15171718 | None:intergenic |
| GTGCAACCCTTGGTAGAGTA+GGG | 0.566951 | 5_3:-15171870 | None:intergenic |
| TTTCAAGAGTTTAAGCAACT+CGG | 0.570856 | 5_3:-15171521 | None:intergenic |
| GGCTTTCTCTATGCTTAAGG+AGG | 0.571686 | 5_3:+15169960 | Msa0801370:CDS |
| TCATCGAATGCAGACCGAGA+TGG | 0.575325 | 5_3:+15170948 | Msa0801370:CDS |
| AACCTACCCTACTCTACCAA+GGG | 0.583818 | 5_3:+15171864 | Msa0801370:CDS |
| GCTACTAGCAGAACTTGAAG+AGG | 0.585655 | 5_3:+15171047 | Msa0801370:CDS |
| ATTGCGAAATTGCAACATCT+CGG | 0.589655 | 5_3:-15171636 | None:intergenic |
| TAACCTACCCTACTCTACCA+AGG | 0.597374 | 5_3:+15171863 | Msa0801370:CDS |
| TGTAATGTTATTGGTGACAA+GGG | 0.597568 | 5_3:+15169939 | Msa0801370:CDS |
| TCGCTGTAACCGGATTTCCA+TGG | 0.601134 | 5_3:-15171430 | None:intergenic |
| TGGTCTAAACGTAACACTAG+TGG | 0.603705 | 5_3:-15171904 | None:intergenic |
| GTGTAATGTTATTGGTGACA+AGG | 0.611263 | 5_3:+15169938 | Msa0801370:CDS |
| TATAGTTGGAGTGACTGTCT+GGG | 0.611721 | 5_3:+15171684 | Msa0801370:CDS |
| AGCAGAACAAACTTCAAGAA+CGG | 0.621236 | 5_3:+15170986 | Msa0801370:CDS |
| TAAGAGACCAAACCGTGTCA+TGG | 0.627227 | 5_3:-15171929 | None:intergenic |
| AACCCTTGGTAGAGTAGGGT+AGG | 0.643864 | 5_3:-15171866 | None:intergenic |
| AACACTAGTGGAGCCAACAT+AGG | 0.645966 | 5_3:-15171892 | None:intergenic |
| CTACAATAAGAGGCATGCAA+GGG | 0.653280 | 5_3:-15171717 | None:intergenic |
| AAGATTGACGAAACAAGCAA+TGG | 0.657302 | 5_3:+15171388 | Msa0801370:CDS |
| GTTTAGACCAAACCATGACA+CGG | 0.684382 | 5_3:+15171917 | Msa0801370:CDS |
| GTAACCGGATTTCCATGGCA+GGG | 0.689857 | 5_3:-15171425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATGATTAATTG+GGG | + | chr5_3:15170230-15170249 | Msa0801370:intron | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | - | chr5_3:15170632-15170651 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | + | chr5_3:15170634-15170653 | Msa0801370:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | + | chr5_3:15170635-15170654 | Msa0801370:intron | 10.0% |
| !! | AAATATTATATGATTAATTG+GGG | + | chr5_3:15170230-15170249 | Msa0801370:intron | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | - | chr5_3:15170632-15170651 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | + | chr5_3:15170634-15170653 | Msa0801370:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | + | chr5_3:15170635-15170654 | Msa0801370:intron | 10.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | + | chr5_3:15170448-15170467 | Msa0801370:intron | 15.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | + | chr5_3:15170448-15170467 | Msa0801370:intron | 15.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | + | chr5_3:15170007-15170026 | Msa0801370:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | - | chr5_3:15170203-15170222 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | - | chr5_3:15170204-15170223 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | - | chr5_3:15170312-15170331 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | + | chr5_3:15170447-15170466 | Msa0801370:intron | 20.0% |
| !! | AATATAAATATTGGGTGTAT+AGG | + | chr5_3:15170604-15170623 | Msa0801370:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | - | chr5_3:15170809-15170828 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | - | chr5_3:15171085-15171104 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | - | chr5_3:15171249-15171268 | None:intergenic | 20.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | + | chr5_3:15170007-15170026 | Msa0801370:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | - | chr5_3:15170203-15170222 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | - | chr5_3:15170204-15170223 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | - | chr5_3:15170312-15170331 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | + | chr5_3:15170447-15170466 | Msa0801370:intron | 20.0% |
| !! | AATATAAATATTGGGTGTAT+AGG | + | chr5_3:15170604-15170623 | Msa0801370:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | - | chr5_3:15170809-15170828 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | - | chr5_3:15171085-15171104 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | - | chr5_3:15171249-15171268 | None:intergenic | 20.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | - | chr5_3:15169997-15170016 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACATAGTATT+GGG | + | chr5_3:15170057-15170076 | Msa0801370:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | + | chr5_3:15170316-15170335 | Msa0801370:intron | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | - | chr5_3:15170338-15170357 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | + | chr5_3:15170472-15170491 | Msa0801370:intron | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | + | chr5_3:15170662-15170681 | Msa0801370:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | + | chr5_3:15171086-15171105 | Msa0801370:CDS | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | + | chr5_3:15171087-15171106 | Msa0801370:CDS | 25.0% |
| ! | AAATTGATGTACAAGTTACA+AGG | - | chr5_3:15171143-15171162 | None:intergenic | 25.0% |
| ! | ATCAGATAAACGAAAATCTT+CGG | + | chr5_3:15171302-15171321 | Msa0801370:CDS | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | + | chr5_3:15171325-15171344 | Msa0801370:CDS | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | - | chr5_3:15171362-15171381 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | - | chr5_3:15171592-15171611 | None:intergenic | 25.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | - | chr5_3:15169997-15170016 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACATAGTATT+GGG | + | chr5_3:15170057-15170076 | Msa0801370:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | + | chr5_3:15170316-15170335 | Msa0801370:intron | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | - | chr5_3:15170338-15170357 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | + | chr5_3:15170472-15170491 | Msa0801370:intron | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | + | chr5_3:15170662-15170681 | Msa0801370:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | + | chr5_3:15171086-15171105 | Msa0801370:CDS | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | + | chr5_3:15171087-15171106 | Msa0801370:CDS | 25.0% |
| ! | AAATTGATGTACAAGTTACA+AGG | - | chr5_3:15171143-15171162 | None:intergenic | 25.0% |
| ! | ATCAGATAAACGAAAATCTT+CGG | + | chr5_3:15171302-15171321 | Msa0801370:CDS | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | + | chr5_3:15171325-15171344 | Msa0801370:CDS | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | - | chr5_3:15171362-15171381 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | - | chr5_3:15171592-15171611 | None:intergenic | 25.0% |
| TTTGGCTAGTGTAATGTTAT+TGG | + | chr5_3:15169930-15169949 | Msa0801370:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | + | chr5_3:15169939-15169958 | Msa0801370:CDS | 30.0% |
| CTTCAATGTGAACATAGTAT+TGG | + | chr5_3:15170056-15170075 | Msa0801370:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | + | chr5_3:15170070-15170089 | Msa0801370:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | + | chr5_3:15170079-15170098 | Msa0801370:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | + | chr5_3:15170237-15170256 | Msa0801370:intron | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | + | chr5_3:15170335-15170354 | Msa0801370:intron | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | - | chr5_3:15170474-15170493 | None:intergenic | 30.0% |
| ! | TAAAGTGAGAACACATTTTC+AGG | + | chr5_3:15170500-15170519 | Msa0801370:intron | 30.0% |
| AAGACACATGAGATGTAATA+TGG | - | chr5_3:15170526-15170545 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | + | chr5_3:15170533-15170552 | Msa0801370:intron | 30.0% |
| TGGTGCGTGAATATAAATAT+TGG | + | chr5_3:15170595-15170614 | Msa0801370:intron | 30.0% | |
| GGTGCGTGAATATAAATATT+GGG | + | chr5_3:15170596-15170615 | Msa0801370:intron | 30.0% | |
| ! | ACATAGGAAACAGTTCATTT+TGG | + | chr5_3:15170764-15170783 | Msa0801370:intron | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | + | chr5_3:15171092-15171111 | Msa0801370:CDS | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | - | chr5_3:15171182-15171201 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | + | chr5_3:15171324-15171343 | Msa0801370:CDS | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | + | chr5_3:15171476-15171495 | Msa0801370:CDS | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | + | chr5_3:15171477-15171496 | Msa0801370:CDS | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | - | chr5_3:15171524-15171543 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | + | chr5_3:15171526-15171545 | Msa0801370:CDS | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | - | chr5_3:15171586-15171605 | None:intergenic | 30.0% |
| TTTGGCTAGTGTAATGTTAT+TGG | + | chr5_3:15169930-15169949 | Msa0801370:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | + | chr5_3:15169939-15169958 | Msa0801370:CDS | 30.0% |
| CTTCAATGTGAACATAGTAT+TGG | + | chr5_3:15170056-15170075 | Msa0801370:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | + | chr5_3:15170070-15170089 | Msa0801370:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | + | chr5_3:15170079-15170098 | Msa0801370:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | + | chr5_3:15170237-15170256 | Msa0801370:intron | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | + | chr5_3:15170335-15170354 | Msa0801370:intron | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | - | chr5_3:15170474-15170493 | None:intergenic | 30.0% |
| ! | TAAAGTGAGAACACATTTTC+AGG | + | chr5_3:15170500-15170519 | Msa0801370:intron | 30.0% |
| AAGACACATGAGATGTAATA+TGG | - | chr5_3:15170526-15170545 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | + | chr5_3:15170533-15170552 | Msa0801370:intron | 30.0% |
| TGGTGCGTGAATATAAATAT+TGG | + | chr5_3:15170595-15170614 | Msa0801370:intron | 30.0% | |
| GGTGCGTGAATATAAATATT+GGG | + | chr5_3:15170596-15170615 | Msa0801370:intron | 30.0% | |
| ! | ACATAGGAAACAGTTCATTT+TGG | + | chr5_3:15170764-15170783 | Msa0801370:intron | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | + | chr5_3:15171092-15171111 | Msa0801370:CDS | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | - | chr5_3:15171182-15171201 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | + | chr5_3:15171324-15171343 | Msa0801370:CDS | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | + | chr5_3:15171476-15171495 | Msa0801370:CDS | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | + | chr5_3:15171477-15171496 | Msa0801370:CDS | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | - | chr5_3:15171524-15171543 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | + | chr5_3:15171526-15171545 | Msa0801370:CDS | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | - | chr5_3:15171586-15171605 | None:intergenic | 30.0% |
| ! | GTGTAATGTTATTGGTGACA+AGG | + | chr5_3:15169938-15169957 | Msa0801370:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | + | chr5_3:15169985-15170004 | Msa0801370:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | + | chr5_3:15170017-15170036 | Msa0801370:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | + | chr5_3:15170078-15170097 | Msa0801370:CDS | 35.0% | |
| GTGTTCTCACTTTACAAATC+CGG | - | chr5_3:15170494-15170513 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | + | chr5_3:15170676-15170695 | Msa0801370:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | - | chr5_3:15170716-15170735 | None:intergenic | 35.0% |
| TTTCCTATGTAGCAGCTATT+GGG | - | chr5_3:15170754-15170773 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | + | chr5_3:15170814-15170833 | Msa0801370:intron | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | - | chr5_3:15170819-15170838 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | + | chr5_3:15170818-15170837 | Msa0801370:intron | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | - | chr5_3:15170873-15170892 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | + | chr5_3:15170986-15171005 | Msa0801370:CDS | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | - | chr5_3:15171022-15171041 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | + | chr5_3:15171059-15171078 | Msa0801370:CDS | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | - | chr5_3:15171178-15171197 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | + | chr5_3:15171279-15171298 | Msa0801370:intron | 35.0% | |
| CTTCGGCTTAAAGAAATTCA+AGG | + | chr5_3:15171319-15171338 | Msa0801370:CDS | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | + | chr5_3:15171332-15171351 | Msa0801370:CDS | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | - | chr5_3:15171387-15171406 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | + | chr5_3:15171388-15171407 | Msa0801370:CDS | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | - | chr5_3:15171443-15171462 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | + | chr5_3:15171450-15171469 | Msa0801370:CDS | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | + | chr5_3:15171537-15171556 | Msa0801370:CDS | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | - | chr5_3:15171639-15171658 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | + | chr5_3:15171824-15171843 | Msa0801370:CDS | 35.0% |
| ! | GTGTAATGTTATTGGTGACA+AGG | + | chr5_3:15169938-15169957 | Msa0801370:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | + | chr5_3:15169985-15170004 | Msa0801370:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | + | chr5_3:15170017-15170036 | Msa0801370:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | + | chr5_3:15170078-15170097 | Msa0801370:CDS | 35.0% | |
| GTGTTCTCACTTTACAAATC+CGG | - | chr5_3:15170494-15170513 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | + | chr5_3:15170676-15170695 | Msa0801370:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | - | chr5_3:15170716-15170735 | None:intergenic | 35.0% |
| TTTCCTATGTAGCAGCTATT+GGG | - | chr5_3:15170754-15170773 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | + | chr5_3:15170814-15170833 | Msa0801370:intron | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | - | chr5_3:15170819-15170838 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | + | chr5_3:15170818-15170837 | Msa0801370:intron | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | - | chr5_3:15170873-15170892 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | + | chr5_3:15170986-15171005 | Msa0801370:CDS | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | - | chr5_3:15171022-15171041 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | + | chr5_3:15171059-15171078 | Msa0801370:CDS | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | - | chr5_3:15171178-15171197 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | + | chr5_3:15171279-15171298 | Msa0801370:intron | 35.0% | |
| CTTCGGCTTAAAGAAATTCA+AGG | + | chr5_3:15171319-15171338 | Msa0801370:CDS | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | + | chr5_3:15171332-15171351 | Msa0801370:CDS | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | - | chr5_3:15171387-15171406 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | + | chr5_3:15171388-15171407 | Msa0801370:CDS | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | - | chr5_3:15171443-15171462 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | + | chr5_3:15171450-15171469 | Msa0801370:CDS | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | + | chr5_3:15171537-15171556 | Msa0801370:CDS | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | - | chr5_3:15171639-15171658 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | + | chr5_3:15171824-15171843 | Msa0801370:CDS | 35.0% |
| ! | GGCACTAATTTCTGAGCTTT+TGG | + | chr5_3:15169912-15169931 | Msa0801370:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | + | chr5_3:15169957-15169976 | Msa0801370:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | + | chr5_3:15170122-15170141 | Msa0801370:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | - | chr5_3:15170377-15170396 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | + | chr5_3:15170375-15170394 | Msa0801370:intron | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | + | chr5_3:15170405-15170424 | Msa0801370:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | + | chr5_3:15170710-15170729 | Msa0801370:intron | 40.0% |
| TTTCCCAATAGCTGCTACAT+AGG | + | chr5_3:15170748-15170767 | Msa0801370:intron | 40.0% | |
| GTTTCCTATGTAGCAGCTAT+TGG | - | chr5_3:15170755-15170774 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | - | chr5_3:15170909-15170928 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | - | chr5_3:15170910-15170929 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | + | chr5_3:15170915-15170934 | Msa0801370:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | - | chr5_3:15170965-15170984 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | + | chr5_3:15170996-15171015 | Msa0801370:CDS | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | + | chr5_3:15171020-15171039 | Msa0801370:CDS | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | - | chr5_3:15171139-15171158 | None:intergenic | 40.0% | |
| GTACATCAATTTATCTGCCC+AGG | + | chr5_3:15171151-15171170 | Msa0801370:intron | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | + | chr5_3:15171278-15171297 | Msa0801370:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | - | chr5_3:15171467-15171486 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | - | chr5_3:15171468-15171487 | None:intergenic | 40.0% | |
| GGTTTAACAGCAGAATTAGC+AGG | - | chr5_3:15171565-15171584 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | + | chr5_3:15171651-15171670 | Msa0801370:CDS | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | + | chr5_3:15171670-15171689 | Msa0801370:CDS | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | + | chr5_3:15171683-15171702 | Msa0801370:CDS | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | + | chr5_3:15171684-15171703 | Msa0801370:CDS | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | - | chr5_3:15171720-15171739 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | - | chr5_3:15171730-15171749 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | + | chr5_3:15171835-15171854 | Msa0801370:CDS | 40.0% |
| TGGTCTAAACGTAACACTAG+TGG | - | chr5_3:15171907-15171926 | None:intergenic | 40.0% | |
| GTTTAGACCAAACCATGACA+CGG | + | chr5_3:15171917-15171936 | Msa0801370:CDS | 40.0% | |
| ! | GGCACTAATTTCTGAGCTTT+TGG | + | chr5_3:15169912-15169931 | Msa0801370:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | + | chr5_3:15169957-15169976 | Msa0801370:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | + | chr5_3:15170122-15170141 | Msa0801370:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | - | chr5_3:15170377-15170396 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | + | chr5_3:15170375-15170394 | Msa0801370:intron | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | + | chr5_3:15170405-15170424 | Msa0801370:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | + | chr5_3:15170710-15170729 | Msa0801370:intron | 40.0% |
| TTTCCCAATAGCTGCTACAT+AGG | + | chr5_3:15170748-15170767 | Msa0801370:intron | 40.0% | |
| GTTTCCTATGTAGCAGCTAT+TGG | - | chr5_3:15170755-15170774 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | - | chr5_3:15170909-15170928 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | - | chr5_3:15170910-15170929 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | + | chr5_3:15170915-15170934 | Msa0801370:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | - | chr5_3:15170965-15170984 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | + | chr5_3:15170996-15171015 | Msa0801370:CDS | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | + | chr5_3:15171020-15171039 | Msa0801370:CDS | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | - | chr5_3:15171139-15171158 | None:intergenic | 40.0% | |
| GTACATCAATTTATCTGCCC+AGG | + | chr5_3:15171151-15171170 | Msa0801370:intron | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | + | chr5_3:15171278-15171297 | Msa0801370:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | - | chr5_3:15171467-15171486 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | - | chr5_3:15171468-15171487 | None:intergenic | 40.0% | |
| GGTTTAACAGCAGAATTAGC+AGG | - | chr5_3:15171565-15171584 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | + | chr5_3:15171651-15171670 | Msa0801370:CDS | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | + | chr5_3:15171670-15171689 | Msa0801370:CDS | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | + | chr5_3:15171683-15171702 | Msa0801370:CDS | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | + | chr5_3:15171684-15171703 | Msa0801370:CDS | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | - | chr5_3:15171720-15171739 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | - | chr5_3:15171730-15171749 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | + | chr5_3:15171835-15171854 | Msa0801370:CDS | 40.0% |
| TGGTCTAAACGTAACACTAG+TGG | - | chr5_3:15171907-15171926 | None:intergenic | 40.0% | |
| GTTTAGACCAAACCATGACA+CGG | + | chr5_3:15171917-15171936 | Msa0801370:CDS | 40.0% | |
| GGCTTTCTCTATGCTTAAGG+AGG | + | chr5_3:15169960-15169979 | Msa0801370:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | + | chr5_3:15170022-15170041 | Msa0801370:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | - | chr5_3:15170117-15170136 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | + | chr5_3:15170121-15170140 | Msa0801370:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | - | chr5_3:15170136-15170155 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | + | chr5_3:15170283-15170302 | Msa0801370:intron | 45.0% |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | + | chr5_3:15170823-15170842 | Msa0801370:intron | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | - | chr5_3:15170890-15170909 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | + | chr5_3:15170891-15170910 | Msa0801370:intron | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | + | chr5_3:15170892-15170911 | Msa0801370:intron | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | - | chr5_3:15170922-15170941 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | + | chr5_3:15170962-15170981 | Msa0801370:CDS | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | + | chr5_3:15171047-15171066 | Msa0801370:CDS | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | - | chr5_3:15171721-15171740 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | + | chr5_3:15171736-15171755 | Msa0801370:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | + | chr5_3:15171863-15171882 | Msa0801370:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | + | chr5_3:15171864-15171883 | Msa0801370:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | - | chr5_3:15171895-15171914 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | - | chr5_3:15171932-15171951 | None:intergenic | 45.0% | |
| GGCTTTCTCTATGCTTAAGG+AGG | + | chr5_3:15169960-15169979 | Msa0801370:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | + | chr5_3:15170022-15170041 | Msa0801370:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | - | chr5_3:15170117-15170136 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | + | chr5_3:15170121-15170140 | Msa0801370:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | - | chr5_3:15170136-15170155 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | + | chr5_3:15170283-15170302 | Msa0801370:intron | 45.0% |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | + | chr5_3:15170823-15170842 | Msa0801370:intron | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | - | chr5_3:15170890-15170909 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | + | chr5_3:15170891-15170910 | Msa0801370:intron | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | + | chr5_3:15170892-15170911 | Msa0801370:intron | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | - | chr5_3:15170922-15170941 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | + | chr5_3:15170962-15170981 | Msa0801370:CDS | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | + | chr5_3:15171047-15171066 | Msa0801370:CDS | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | - | chr5_3:15171721-15171740 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | + | chr5_3:15171736-15171755 | Msa0801370:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | + | chr5_3:15171863-15171882 | Msa0801370:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | + | chr5_3:15171864-15171883 | Msa0801370:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | - | chr5_3:15171895-15171914 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | - | chr5_3:15171932-15171951 | None:intergenic | 45.0% | |
| !! | TAAAATATTATATGATTAAT+TGG | + | chr5_3:15170228-15170247 | Msa0801370:intron | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | + | chr5_3:15170229-15170248 | Msa0801370:intron | 5.0% |
| !! | TAAAATATTATATGATTAAT+TGG | + | chr5_3:15170228-15170247 | Msa0801370:intron | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | + | chr5_3:15170229-15170248 | Msa0801370:intron | 5.0% |
| TGCCATTCAAAGGGAGAGAC+AGG | + | chr5_3:15170131-15170150 | Msa0801370:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | - | chr5_3:15170427-15170446 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | - | chr5_3:15170431-15170450 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | + | chr5_3:15170948-15170967 | Msa0801370:CDS | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | - | chr5_3:15171014-15171033 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | - | chr5_3:15171132-15171151 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | - | chr5_3:15171428-15171447 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | - | chr5_3:15171429-15171448 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | - | chr5_3:15171433-15171452 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | - | chr5_3:15171811-15171830 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | - | chr5_3:15171869-15171888 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | - | chr5_3:15171873-15171892 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | + | chr5_3:15171879-15171898 | Msa0801370:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | + | chr5_3:15171922-15171941 | Msa0801370:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | - | chr5_3:15171927-15171946 | None:intergenic | 50.0% | |
| TGCCATTCAAAGGGAGAGAC+AGG | + | chr5_3:15170131-15170150 | Msa0801370:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | - | chr5_3:15170427-15170446 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | - | chr5_3:15170431-15170450 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | + | chr5_3:15170948-15170967 | Msa0801370:CDS | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | - | chr5_3:15171014-15171033 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | - | chr5_3:15171132-15171151 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | - | chr5_3:15171428-15171447 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | - | chr5_3:15171429-15171448 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | - | chr5_3:15171433-15171452 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | - | chr5_3:15171811-15171830 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | - | chr5_3:15171869-15171888 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | - | chr5_3:15171873-15171892 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | + | chr5_3:15171879-15171898 | Msa0801370:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | + | chr5_3:15171922-15171941 | Msa0801370:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | - | chr5_3:15171927-15171946 | None:intergenic | 50.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | - | chr5_3:15170905-15170924 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | - | chr5_3:15171171-15171190 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | - | chr5_3:15171172-15171191 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | - | chr5_3:15171421-15171440 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | + | chr5_3:15171421-15171440 | Msa0801370:CDS | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | - | chr5_3:15171874-15171893 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | - | chr5_3:15171883-15171902 | None:intergenic | 55.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | - | chr5_3:15170905-15170924 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | - | chr5_3:15171171-15171190 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | - | chr5_3:15171172-15171191 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | - | chr5_3:15171421-15171440 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | + | chr5_3:15171421-15171440 | Msa0801370:CDS | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | - | chr5_3:15171874-15171893 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | - | chr5_3:15171883-15171902 | None:intergenic | 55.0% | |
| TTCCCAATGCACCTCACGCC+CGG | + | chr5_3:15170559-15170578 | Msa0801370:intron | 60.0% | |
| CACCAAGCCCAGTAAGTGCC+GGG | - | chr5_3:15170580-15170599 | None:intergenic | 60.0% | |
| GCACCAAGCCCAGTAAGTGC+CGG | - | chr5_3:15170581-15170600 | None:intergenic | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | + | chr5_3:15171413-15171432 | Msa0801370:CDS | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | - | chr5_3:15171418-15171437 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | - | chr5_3:15171424-15171443 | None:intergenic | 60.0% | |
| TTCCCAATGCACCTCACGCC+CGG | + | chr5_3:15170559-15170578 | Msa0801370:intron | 60.0% | |
| CACCAAGCCCAGTAAGTGCC+GGG | - | chr5_3:15170580-15170599 | None:intergenic | 60.0% | |
| GCACCAAGCCCAGTAAGTGC+CGG | - | chr5_3:15170581-15170600 | None:intergenic | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | + | chr5_3:15171413-15171432 | Msa0801370:CDS | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | - | chr5_3:15171418-15171437 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | - | chr5_3:15171424-15171443 | None:intergenic | 60.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | - | chr5_3:15170564-15170583 | None:intergenic | 65.0% | |
| ACCTCACGCCCGGCACTTAC+TGG | + | chr5_3:15170569-15170588 | Msa0801370:intron | 65.0% | |
| CCTCACGCCCGGCACTTACT+GGG | + | chr5_3:15170570-15170589 | Msa0801370:intron | 65.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | - | chr5_3:15170564-15170583 | None:intergenic | 65.0% | |
| ACCTCACGCCCGGCACTTAC+TGG | + | chr5_3:15170569-15170588 | Msa0801370:intron | 65.0% | |
| CCTCACGCCCGGCACTTACT+GGG | + | chr5_3:15170570-15170589 | Msa0801370:intron | 65.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | - | chr5_3:15170565-15170584 | None:intergenic | 70.0% | |
| !! | CCCAGTAAGTGCCGGGCGTG+AGG | - | chr5_3:15170573-15170592 | None:intergenic | 70.0% |
| CGCCCGGCACTTACTGGGCT+TGG | + | chr5_3:15170575-15170594 | Msa0801370:intron | 70.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | - | chr5_3:15170565-15170584 | None:intergenic | 70.0% | |
| !! | CCCAGTAAGTGCCGGGCGTG+AGG | - | chr5_3:15170573-15170592 | None:intergenic | 70.0% |
| CGCCCGGCACTTACTGGGCT+TGG | + | chr5_3:15170575-15170594 | Msa0801370:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15169910 | 15171963 | 15169910 | ID=Msa0801370;Name=Msa0801370 |
| chr5_3 | mRNA | 15169910 | 15171963 | 15169910 | ID=Msa0801370-mRNA-1;Parent=Msa0801370;Name=Msa0801370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.33|1|1|1|3|0|363 |
| chr5_3 | exon | 15169910 | 15170152 | 15169910 | ID=Msa0801370-mRNA-1:exon:6347;Parent=Msa0801370-mRNA-1 |
| chr5_3 | exon | 15170934 | 15171113 | 15170934 | ID=Msa0801370-mRNA-1:exon:6348;Parent=Msa0801370-mRNA-1 |
| chr5_3 | exon | 15171295 | 15171963 | 15171295 | ID=Msa0801370-mRNA-1:exon:6349;Parent=Msa0801370-mRNA-1 |
| chr5_3 | CDS | 15169910 | 15170152 | 15169910 | ID=Msa0801370-mRNA-1:cds;Parent=Msa0801370-mRNA-1 |
| chr5_3 | CDS | 15170934 | 15171113 | 15170934 | ID=Msa0801370-mRNA-1:cds;Parent=Msa0801370-mRNA-1 |
| chr5_3 | CDS | 15171295 | 15171963 | 15171295 | ID=Msa0801370-mRNA-1:cds;Parent=Msa0801370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
