Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840350 | AES70473.1 | 93.443 | 549 | 35 | 1 | 1 | 549 | 1 | 548 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840350 | G7J1G0 | 93.443 | 549 | 35 | 1 | 1 | 549 | 1 | 548 | 0.0 | 1072 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737340 | Msa0840350 | 0.818744 | 1.670293e-52 | -8.615850e-47 |
| Msa0840350 | Msa1268600 | 0.939294 | 1.618410e-99 | -8.615850e-47 |
| Msa0213670 | Msa0840350 | 0.803405 | 3.541981e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840350 | MtrunA17_Chr4g0044661 | 43.797 | 532 | 227 | 8 | 28 | 544 | 7 | 481 | 9.13e-140 | 413 |
| Msa0840350 | MtrunA17_Chr1g0171051 | 46.341 | 328 | 108 | 5 | 20 | 314 | 41 | 333 | 7.53e-85 | 267 |
| Msa0840350 | MtrunA17_Chr5g0421991 | 50.719 | 278 | 129 | 2 | 279 | 548 | 2 | 279 | 1.35e-78 | 248 |
| Msa0840350 | MtrunA17_Chr2g0304851 | 35.401 | 387 | 224 | 7 | 25 | 408 | 2 | 365 | 1.57e-74 | 241 |
| Msa0840350 | MtrunA17_Chr1g0167871 | 34.018 | 438 | 273 | 9 | 29 | 461 | 207 | 633 | 9.87e-74 | 248 |
| Msa0840350 | MtrunA17_Chr5g0393531 | 33.971 | 209 | 124 | 4 | 28 | 234 | 1 | 197 | 2.92e-33 | 126 |
| Msa0840350 | MtrunA17_Chr7g0231491 | 35.714 | 210 | 127 | 4 | 29 | 234 | 36 | 241 | 1.88e-32 | 125 |
| Msa0840350 | MtrunA17_Chr5g0420451 | 32.850 | 207 | 126 | 3 | 28 | 234 | 2 | 195 | 1.51e-29 | 115 |
| Msa0840350 | MtrunA17_Chr5g0393521 | 29.614 | 233 | 156 | 5 | 283 | 511 | 9 | 237 | 2.73e-28 | 114 |
| Msa0840350 | MtrunA17_Chr7g0223511 | 39.189 | 148 | 88 | 1 | 26 | 173 | 22 | 167 | 4.49e-28 | 112 |
| Msa0840350 | MtrunA17_Chr8g0347361 | 35.503 | 169 | 103 | 3 | 26 | 192 | 9 | 173 | 9.98e-27 | 107 |
| Msa0840350 | MtrunA17_Chr6g0481111 | 39.706 | 136 | 79 | 2 | 30 | 164 | 3 | 136 | 4.17e-26 | 103 |
| Msa0840350 | MtrunA17_Chr1g0172341 | 43.590 | 117 | 64 | 1 | 26 | 142 | 1 | 115 | 4.56e-26 | 102 |
| Msa0840350 | MtrunA17_Chr1g0206481 | 29.066 | 289 | 182 | 10 | 47 | 325 | 20 | 295 | 1.74e-24 | 103 |
| Msa0840350 | MtrunA17_Chr4g0022201 | 55.102 | 98 | 43 | 1 | 18 | 115 | 66 | 162 | 6.57e-24 | 98.6 |
| Msa0840350 | MtrunA17_Chr5g0417421 | 30.978 | 184 | 121 | 4 | 316 | 497 | 110 | 289 | 6.62e-23 | 99.0 |
| Msa0840350 | MtrunA17_Chr2g0278111 | 24.542 | 273 | 195 | 5 | 32 | 299 | 5 | 271 | 4.81e-22 | 97.1 |
| Msa0840350 | MtrunA17_Chr5g0411141 | 24.542 | 273 | 195 | 5 | 32 | 299 | 6 | 272 | 5.52e-22 | 97.1 |
| Msa0840350 | MtrunA17_Chr5g0423441 | 25.726 | 241 | 171 | 4 | 32 | 267 | 5 | 242 | 1.72e-21 | 94.0 |
| Msa0840350 | MtrunA17_Chr5g0393801 | 44.660 | 103 | 55 | 1 | 28 | 130 | 1 | 101 | 9.04e-21 | 87.8 |
| Msa0840350 | MtrunA17_Chr6g0462951 | 35.385 | 130 | 82 | 1 | 111 | 238 | 2 | 131 | 2.87e-20 | 87.4 |
| Msa0840350 | MtrunA17_Chr2g0280031 | 26.609 | 233 | 156 | 5 | 47 | 266 | 1 | 231 | 1.36e-18 | 85.9 |
| Msa0840350 | MtrunA17_Chr1g0148611 | 30.612 | 147 | 100 | 2 | 91 | 235 | 16 | 162 | 2.97e-18 | 82.4 |
| Msa0840350 | MtrunA17_Chr8g0363071 | 28.758 | 153 | 107 | 2 | 79 | 229 | 5 | 157 | 2.54e-17 | 79.3 |
| Msa0840350 | MtrunA17_Chr3g0096071 | 28.261 | 184 | 122 | 5 | 172 | 355 | 38 | 211 | 7.50e-16 | 77.0 |
| Msa0840350 | MtrunA17_Chr8g0373221 | 57.143 | 56 | 23 | 1 | 20 | 75 | 41 | 95 | 2.57e-15 | 72.0 |
| Msa0840350 | MtrunA17_Chr5g0421841 | 26.961 | 204 | 135 | 4 | 32 | 226 | 5 | 203 | 4.14e-15 | 74.3 |
| Msa0840350 | MtrunA17_Chr7g0234461 | 38.542 | 96 | 59 | 0 | 69 | 164 | 1 | 96 | 5.73e-15 | 70.9 |
| Msa0840350 | MtrunA17_Chr3g0093401 | 28.966 | 145 | 101 | 1 | 31 | 173 | 4 | 148 | 2.65e-14 | 72.8 |
| Msa0840350 | MtrunA17_Chr4g0026601 | 30.573 | 157 | 100 | 3 | 47 | 201 | 33 | 182 | 2.70e-14 | 71.6 |
| Msa0840350 | MtrunA17_Chr6g0469931 | 23.913 | 230 | 160 | 6 | 43 | 265 | 18 | 239 | 2.76e-11 | 66.2 |
| Msa0840350 | MtrunA17_Chr5g0421741 | 28.571 | 126 | 88 | 1 | 32 | 155 | 5 | 130 | 8.41e-11 | 61.2 |
| Msa0840350 | MtrunA17_Chr1g0148711 | 28.571 | 126 | 88 | 1 | 32 | 155 | 5 | 130 | 8.41e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840350 | AT2G05642.1 | 23.797 | 395 | 226 | 12 | 47 | 410 | 20 | 370 | 4.01e-18 | 88.2 |
| Msa0840350 | AT1G52950.1 | 21.939 | 392 | 267 | 11 | 31 | 401 | 6 | 379 | 3.05e-16 | 82.4 |
Find 127 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACAATGCTTAACTTTA+AGG | 0.095342 | 5_4:+16046311 | Msa0840350:CDS |
| CCTTTCAGACTTGCAGTTTC+AGG | 0.106605 | 5_4:+16046372 | Msa0840350:CDS |
| TCCTGAAATTGCTGAGTTTA+AGG | 0.120673 | 5_4:+16047052 | Msa0840350:CDS |
| ATCTTCCTGGGAGTTTCTTT+TGG | 0.165757 | 5_4:-16048796 | None:intergenic |
| GCCTTAAACTCAGCAATTTC+AGG | 0.216851 | 5_4:-16047053 | None:intergenic |
| AGAACAATGAAAATTGTTTC+AGG | 0.231352 | 5_4:-16046825 | None:intergenic |
| TAAAGACTTTGGAGAGATTC+TGG | 0.250427 | 5_4:+16046452 | Msa0840350:CDS |
| ATCTTATGATTGTCCCCTTC+TGG | 0.254095 | 5_4:-16046617 | None:intergenic |
| CATTATTATGTTTAGGTATA+GGG | 0.260474 | 5_4:+16048064 | Msa0840350:intron |
| AGGTGGTCTGATTAGTTCTT+TGG | 0.261895 | 5_4:-16048900 | None:intergenic |
| AAGATCAATGCCAACAAATA+TGG | 0.270148 | 5_4:+16047415 | Msa0840350:CDS |
| TGGCTCCAACTTGGGTTGTT+TGG | 0.270885 | 5_4:-16048880 | None:intergenic |
| ATGGATCTTTGGTGTGTTAC+TGG | 0.282388 | 5_4:+16046081 | Msa0840350:CDS |
| AGTTGTGTGCCCAAAGAATA+AGG | 0.284516 | 5_4:+16048319 | Msa0840350:CDS |
| CTGTGAGGGTCATGGATCTT+TGG | 0.306298 | 5_4:+16046070 | Msa0840350:CDS |
| GGTTTAAATTAGTAATATCT+TGG | 0.328442 | 5_4:-16046596 | None:intergenic |
| CACACAACTTGATCCAGAAT+TGG | 0.335002 | 5_4:-16048305 | None:intergenic |
| TCTTTCAGATTTAAAGACTT+TGG | 0.368798 | 5_4:+16046441 | Msa0840350:CDS |
| CGTCTGAGGAAGTTGCTAAA+TGG | 0.370508 | 5_4:+16046262 | Msa0840350:CDS |
| ACAAGGGGATATCATGTCTA+AGG | 0.370564 | 5_4:+16047234 | Msa0840350:CDS |
| AGCAAGACTCCAAACATCTT+TGG | 0.373079 | 5_4:-16046049 | None:intergenic |
| CAATACCTGGTCTGGAACTA+AGG | 0.378876 | 5_4:+16047010 | Msa0840350:CDS |
| AATGATTCATGCCACACTTT+GGG | 0.379707 | 5_4:+16046755 | Msa0840350:CDS |
| CAAGCTTAGTTGAAGAAAGT+TGG | 0.383832 | 5_4:-16048857 | None:intergenic |
| GTTGAGTTATCTGAGATCCT+TGG | 0.390647 | 5_4:-16047213 | None:intergenic |
| ACACAACTTGATCCAGAATT+GGG | 0.394412 | 5_4:-16048304 | None:intergenic |
| CAACCCAATCAACATCTTCC+TGG | 0.399297 | 5_4:-16048809 | None:intergenic |
| CAGGAAGATGTTGATTGGGT+TGG | 0.399704 | 5_4:+16048810 | Msa0840350:CDS |
| TTCAAAATCAAAGCTTGTCC+TGG | 0.402552 | 5_4:+16048344 | Msa0840350:CDS |
| AAGAAATTCTGAAGGAGAAC+AGG | 0.404484 | 5_4:+16046286 | Msa0840350:CDS |
| TTGAGTTATCTGAGATCCTT+GGG | 0.405606 | 5_4:-16047212 | None:intergenic |
| TAGTTCTTTGGCTCCAACTT+GGG | 0.418318 | 5_4:-16048888 | None:intergenic |
| AAAATCAACTGGTGTGATAA+TGG | 0.421011 | 5_4:-16046400 | None:intergenic |
| TAATGATTCATGCCACACTT+TGG | 0.422861 | 5_4:+16046754 | Msa0840350:CDS |
| GGGTAAGTTGTGACAATTGT+TGG | 0.422919 | 5_4:-16047192 | None:intergenic |
| ACTCCCAGGAAGATGTTGAT+TGG | 0.425963 | 5_4:+16048805 | Msa0840350:CDS |
| GCTGAAAGAACAATTGGTTC+AGG | 0.430719 | 5_4:+16048178 | Msa0840350:CDS |
| CTCCCAGGAAGATGTTGATT+GGG | 0.438370 | 5_4:+16048806 | Msa0840350:CDS |
| CTTAGTTCCAGACCAGGTAT+TGG | 0.438836 | 5_4:-16047009 | None:intergenic |
| CTTGCATTGACATCATCAAT+TGG | 0.439409 | 5_4:-16047169 | None:intergenic |
| TGTGTTACCAATACCTGGTC+TGG | 0.440026 | 5_4:+16047002 | Msa0840350:CDS |
| CGAGGAGCTGAAAGAACAAT+TGG | 0.443502 | 5_4:+16048172 | Msa0840350:CDS |
| AAGCTTAGTTGAAGAAAGTT+GGG | 0.445023 | 5_4:-16048856 | None:intergenic |
| TGAATGACTCCAAAGATGTT+TGG | 0.448015 | 5_4:+16046040 | Msa0840350:CDS |
| TAAATCTGAAAGAGGCTAAA+GGG | 0.448445 | 5_4:-16046431 | None:intergenic |
| ATAGATCCATCCATATTTGT+TGG | 0.453507 | 5_4:-16047425 | None:intergenic |
| CCCTTGTTCATCCTAACAGT+GGG | 0.454640 | 5_4:-16045973 | None:intergenic |
| CTTTGTGTGTTACCAATACC+TGG | 0.454911 | 5_4:+16046997 | Msa0840350:CDS |
| TCTTACATGCATCACATGAT+TGG | 0.460659 | 5_4:-16047281 | None:intergenic |
| GGAGATGGTGATTGCTGATA+AGG | 0.464362 | 5_4:+16046128 | Msa0840350:CDS |
| TGCCCTTCTTGATGAGGTGA+AGG | 0.464872 | 5_4:+16048545 | Msa0840350:CDS |
| AGGATCAGTTTCACCACAAA+GGG | 0.465305 | 5_4:-16048748 | None:intergenic |
| AAGAAGGGCAAGCTTTGAAC+TGG | 0.466656 | 5_4:-16048532 | None:intergenic |
| TTAGTTCTTTGGCTCCAACT+TGG | 0.469123 | 5_4:-16048889 | None:intergenic |
| ATCTATGTAAGCCCACTGTT+AGG | 0.473351 | 5_4:+16045962 | Msa0840350:CDS |
| TTCAGCAATAGTTACACAAA+TGG | 0.476623 | 5_4:-16047386 | None:intergenic |
| CCTCAGACGGAACAGTCAGC+TGG | 0.487210 | 5_4:-16046248 | None:intergenic |
| GAGTCTTGCTGTGAGGGTCA+TGG | 0.489172 | 5_4:+16046062 | Msa0840350:CDS |
| TTAAATCTGAAAGAGGCTAA+AGG | 0.489515 | 5_4:-16046432 | None:intergenic |
| CTGATTTGAATAACAGAATA+CGG | 0.489798 | 5_4:-16048374 | None:intergenic |
| GACTTTGGAGAGATTCTGGC+TGG | 0.492370 | 5_4:+16046456 | Msa0840350:CDS |
| AGGTGGGGTTGCAGAACTGC+AGG | 0.493318 | 5_4:-16048772 | None:intergenic |
| ATTCAAATCAGTGACAATGA+AGG | 0.496975 | 5_4:+16048386 | Msa0840350:CDS |
| TATGTTTAGGTATAGGGTTG+AGG | 0.503694 | 5_4:+16048070 | Msa0840350:intron |
| TGAGGTTGAAGCTGTTTACA+AGG | 0.504777 | 5_4:+16048088 | Msa0840350:CDS |
| GGGATGGCAGGAAAATCAAC+TGG | 0.507186 | 5_4:-16046411 | None:intergenic |
| ACATCCTTGACATTGTCATA+AGG | 0.510440 | 5_4:-16046018 | None:intergenic |
| AAAGTGTGGCATGAATCATT+AGG | 0.514708 | 5_4:-16046752 | None:intergenic |
| CAATTGTTCTTTCAGCTCCT+CGG | 0.515105 | 5_4:-16048171 | None:intergenic |
| AAAACAATTTGGATTGGGAG+AGG | 0.522256 | 5_4:+16048427 | Msa0840350:CDS |
| AAAGTCTTTAAATCTGAAAG+AGG | 0.524921 | 5_4:-16046439 | None:intergenic |
| GTTCAGACAAGAGCAGCACT+TGG | 0.529770 | 5_4:+16046107 | Msa0840350:CDS |
| TACAGGACTGATCTGCTCAT+AGG | 0.529931 | 5_4:+16046483 | Msa0840350:CDS |
| GGTTTCCTCTACATTTGAGT+TGG | 0.530353 | 5_4:-16047492 | None:intergenic |
| AAATATGGATGGATCTATGA+TGG | 0.530463 | 5_4:+16047430 | Msa0840350:CDS |
| GCTTGCCAAACAACCCAAGT+TGG | 0.531512 | 5_4:+16048875 | Msa0840350:CDS |
| AAAGCTTGCCCTTCTTGATG+AGG | 0.535128 | 5_4:+16048539 | Msa0840350:CDS |
| AAAGAGGCTAAAGGGATGGC+AGG | 0.536094 | 5_4:-16046423 | None:intergenic |
| GTGTGCTTACCAGATGTCAT+TGG | 0.536468 | 5_4:+16046567 | Msa0840350:intron |
| TTCAAATCAGTGACAATGAA+GGG | 0.538012 | 5_4:+16048387 | Msa0840350:CDS |
| AGATTCTGGCTGGAAACTAC+AGG | 0.541117 | 5_4:+16046466 | Msa0840350:CDS |
| ACAGAATACGGACTTGATCC+AGG | 0.542102 | 5_4:-16048362 | None:intergenic |
| TCCCTTGTTCATCCTAACAG+TGG | 0.543232 | 5_4:-16045974 | None:intergenic |
| TTGTACTAAGGGTGTGAGGA+TGG | 0.546435 | 5_4:+16047462 | Msa0840350:CDS |
| TATTACTAATTTAAACCAGA+AGG | 0.547321 | 5_4:+16046602 | Msa0840350:CDS |
| CCTGAAACTGCAAGTCTGAA+AGG | 0.548677 | 5_4:-16046372 | None:intergenic |
| CAACCTTCACCTCATCAAGA+AGG | 0.551347 | 5_4:-16048548 | None:intergenic |
| ATTACTAATTTAAACCAGAA+GGG | 0.551534 | 5_4:+16046603 | Msa0840350:CDS |
| CATTTAGCAACTTCCTCAGA+CGG | 0.553347 | 5_4:-16046261 | None:intergenic |
| TGTTTGGAGTCTTGCTGTGA+GGG | 0.555113 | 5_4:+16046056 | Msa0840350:CDS |
| CATTGTTCTCAAGCATGTGA+GGG | 0.556192 | 5_4:+16046839 | Msa0840350:CDS |
| AACCCAATCAACATCTTCCT+GGG | 0.565243 | 5_4:-16048808 | None:intergenic |
| TCATTGTTCTCAAGCATGTG+AGG | 0.565651 | 5_4:+16046838 | Msa0840350:CDS |
| ACCTCCCAAAAGAAACTCCC+AGG | 0.566692 | 5_4:+16048791 | Msa0840350:CDS |
| ATTGTGCAGCAATCCCTTTG+TGG | 0.572427 | 5_4:+16048735 | Msa0840350:intron |
| TTACTAATTTAAACCAGAAG+GGG | 0.575332 | 5_4:+16046604 | Msa0840350:CDS |
| TCAATGCCAACAAATATGGA+TGG | 0.576743 | 5_4:+16047419 | Msa0840350:CDS |
| ACAAGAGCAGCACTTGGAGA+TGG | 0.580803 | 5_4:+16046113 | Msa0840350:CDS |
| CAAGCATGTGAGGGTTAGAG+AGG | 0.591398 | 5_4:+16046848 | Msa0840350:CDS |
| AAGGATCAGTTTCACCACAA+AGG | 0.600120 | 5_4:-16048749 | None:intergenic |
| AACCTTCACCTCATCAAGAA+GGG | 0.600131 | 5_4:-16048547 | None:intergenic |
| TCTGAAAGAGGCTAAAGGGA+TGG | 0.601963 | 5_4:-16046427 | None:intergenic |
| TGCAAAATCATCCCAAAGTG+TGG | 0.604134 | 5_4:-16046766 | None:intergenic |
| AATGATGTTGCATCCATCGT+AGG | 0.607267 | 5_4:+16048140 | Msa0840350:CDS |
| CTCGGCAGACATTCCTACGA+TGG | 0.608408 | 5_4:-16048153 | None:intergenic |
| ATCTCAGATAACTCAACAAG+GGG | 0.609389 | 5_4:+16047219 | Msa0840350:CDS |
| CACAACTTGATCCAGAATTG+GGG | 0.613833 | 5_4:-16048303 | None:intergenic |
| GGATCTCAGATAACTCAACA+AGG | 0.636734 | 5_4:+16047217 | Msa0840350:CDS |
| AAATTGCTGAGTTTAAGGCT+AGG | 0.637045 | 5_4:+16047057 | Msa0840350:CDS |
| TAAATGGAAAGAAATTCTGA+AGG | 0.637577 | 5_4:+16046278 | Msa0840350:CDS |
| TATGACCTTAGTTCCAGACC+AGG | 0.637924 | 5_4:-16047015 | None:intergenic |
| AATGGCCAACTCAAATGTAG+AGG | 0.644356 | 5_4:+16047487 | Msa0840350:CDS |
| GATCTCAGATAACTCAACAA+GGG | 0.646120 | 5_4:+16047218 | Msa0840350:CDS |
| GCCCACTGTTAGGATGAACA+AGG | 0.648941 | 5_4:+16045972 | Msa0840350:CDS |
| TCGTCCTTATGACAATGTCA+AGG | 0.652415 | 5_4:+16046014 | Msa0840350:CDS |
| CAGGTATTGGTAACACACAA+AGG | 0.655910 | 5_4:-16046996 | None:intergenic |
| TGGTTCTACACAAGATGTCG+AGG | 0.657432 | 5_4:+16048830 | Msa0840350:CDS |
| GATGGTGATTGCTGATAAGG+AGG | 0.660226 | 5_4:+16046131 | Msa0840350:CDS |
| GGGGTTGCAGAACTGCAGGA+AGG | 0.667416 | 5_4:-16048768 | None:intergenic |
| CCCACTGTTAGGATGAACAA+GGG | 0.674630 | 5_4:+16045973 | Msa0840350:CDS |
| AAGGGTGTGAGGATGGACAA+TGG | 0.675698 | 5_4:+16047469 | Msa0840350:CDS |
| CATCGTAGGAATGTCTGCCG+AGG | 0.677090 | 5_4:+16048154 | Msa0840350:CDS |
| CAATTGTCACAACTTACCCA+AGG | 0.678179 | 5_4:+16047196 | Msa0840350:CDS |
| ATGTTTGGAGTCTTGCTGTG+AGG | 0.688417 | 5_4:+16046055 | Msa0840350:CDS |
| TTAATGATGAAGCAAAACCC+AGG | 0.703439 | 5_4:+16047518 | Msa0840350:CDS |
| GTGAGGGTTAGAGAGGCACA+AGG | 0.733223 | 5_4:+16046855 | Msa0840350:CDS |
| ACAACTTGATCCAGAATTGG+GGG | 0.737840 | 5_4:-16048302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATAAAATATATTGTTA+GGG | - | chr5_4:16047102-16047121 | None:intergenic | 10.0% |
| !!! | ATTTTTATCTAACTTTAATA+TGG | + | chr5_4:16047995-16048014 | Msa0840350:intron | 10.0% |
| !!! | TTTTTATCTAACTTTAATAT+GGG | + | chr5_4:16047996-16048015 | Msa0840350:intron | 10.0% |
| !! | TATCATGTATATAAATATAG+TGG | + | chr5_4:16046729-16046748 | Msa0840350:intron | 15.0% |
| !! | CATTATTACGATTATAATTA+TGG | - | chr5_4:16046941-16046960 | None:intergenic | 15.0% |
| !! | GTTCTATAAAATATATTGTT+AGG | - | chr5_4:16047103-16047122 | None:intergenic | 15.0% |
| !! | TATTAAAAACATAGTAACAA+TGG | - | chr5_4:16047125-16047144 | None:intergenic | 15.0% |
| !! | ATGTTTATAAATTCATAGAT+TGG | + | chr5_4:16048257-16048276 | Msa0840350:intron | 15.0% |
| !!! | ATAATTTGAGTATTTTATGT+AGG | - | chr5_4:16048687-16048706 | None:intergenic | 15.0% |
| !! | TTATACAATGCTTAACTTTA+AGG | + | chr5_4:16046311-16046330 | Msa0840350:CDS | 20.0% |
| !! | GGTTTAAATTAGTAATATCT+TGG | - | chr5_4:16046599-16046618 | None:intergenic | 20.0% |
| !! | TATTACTAATTTAAACCAGA+AGG | + | chr5_4:16046602-16046621 | Msa0840350:CDS | 20.0% |
| !! | ATTACTAATTTAAACCAGAA+GGG | + | chr5_4:16046603-16046622 | Msa0840350:CDS | 20.0% |
| !! | GTTAGTATATACTTAGAATA+TGG | - | chr5_4:16046700-16046719 | None:intergenic | 20.0% |
| !! | GCATAACAATAAATAGATAA+AGG | - | chr5_4:16046894-16046913 | None:intergenic | 20.0% |
| !! | TATCTATTTATTGTTATGCA+AGG | + | chr5_4:16046895-16046914 | Msa0840350:intron | 20.0% |
| !!! | TAGTGATAATTGTTGATAAT+AGG | - | chr5_4:16047314-16047333 | None:intergenic | 20.0% |
| !! | AATGAAACTTATAGACTTAT+GGG | - | chr5_4:16047930-16047949 | None:intergenic | 20.0% |
| !! | AAATGAAACTTATAGACTTA+TGG | - | chr5_4:16047931-16047950 | None:intergenic | 20.0% |
| !!! | CATAATAATGCTCATATTTT+AGG | - | chr5_4:16048054-16048073 | None:intergenic | 20.0% |
| !! | ATATGAGCATTATTATGTTT+AGG | + | chr5_4:16048057-16048076 | Msa0840350:intron | 20.0% |
| !! | CATTATTATGTTTAGGTATA+GGG | + | chr5_4:16048064-16048083 | Msa0840350:intron | 20.0% |
| !! | AACACTATATTTAGAAGTAA+TGG | - | chr5_4:16048214-16048233 | None:intergenic | 20.0% |
| !! | ATTACTTCTAAATATAGTGT+TGG | + | chr5_4:16048213-16048232 | Msa0840350:intron | 20.0% |
| !! | ATTAGACACATATCTAAAAA+GGG | - | chr5_4:16048239-16048258 | None:intergenic | 20.0% |
| !!! | TTTTGAAAACCTTATTCTTT+GGG | - | chr5_4:16048331-16048350 | None:intergenic | 20.0% |
| !!! | ATTTTGAAAACCTTATTCTT+TGG | - | chr5_4:16048332-16048351 | None:intergenic | 20.0% |
| !! | AAAAACCTTGAAAAACAATT+TGG | + | chr5_4:16048416-16048435 | Msa0840350:CDS | 20.0% |
| ! | TAAATGGAAAGAAATTCTGA+AGG | + | chr5_4:16046278-16046297 | Msa0840350:CDS | 25.0% |
| ! | AAAGTCTTTAAATCTGAAAG+AGG | - | chr5_4:16046442-16046461 | None:intergenic | 25.0% |
| ! | TCTTTCAGATTTAAAGACTT+TGG | + | chr5_4:16046441-16046460 | Msa0840350:CDS | 25.0% |
| ! | TTACTAATTTAAACCAGAAG+GGG | + | chr5_4:16046604-16046623 | Msa0840350:CDS | 25.0% |
| ! | AGAACAATGAAAATTGTTTC+AGG | - | chr5_4:16046828-16046847 | None:intergenic | 25.0% |
| !! | GAACTATTGTATAACTGTTT+TGG | + | chr5_4:16047340-16047359 | Msa0840350:intron | 25.0% |
| ! | TGGTTATTGTTGTATGTTTA+AGG | + | chr5_4:16047360-16047379 | Msa0840350:intron | 25.0% |
| !! | ATTTGATTAAGGGTGTATAA+TGG | + | chr5_4:16047592-16047611 | Msa0840350:intron | 25.0% |
| ! | AGATAAACCATGTATAAAGA+GGG | - | chr5_4:16047754-16047773 | None:intergenic | 25.0% |
| !!! | TTTCTGGTTTTCTGTTTTTA+GGG | + | chr5_4:16047790-16047809 | Msa0840350:intron | 25.0% |
| ! | ATGAAACTTATAGACTTATG+GGG | - | chr5_4:16047929-16047948 | None:intergenic | 25.0% |
| ! | ATCGAATAATATTGAATCTG+AGG | - | chr5_4:16047955-16047974 | None:intergenic | 25.0% |
| ! | CAGATTCAATATTATTCGAT+CGG | + | chr5_4:16047955-16047974 | Msa0840350:intron | 25.0% |
| ! | GCATTATTATGTTTAGGTAT+AGG | + | chr5_4:16048063-16048082 | Msa0840350:intron | 25.0% |
| !! | ACAAAGCAAAGTTTTTGTTA+TGG | + | chr5_4:16048114-16048133 | Msa0840350:CDS | 25.0% |
| !!! | CAAAGCAAAGTTTTTGTTAT+GGG | + | chr5_4:16048115-16048134 | Msa0840350:CDS | 25.0% |
| ! | CATTAGACACATATCTAAAA+AGG | - | chr5_4:16048240-16048259 | None:intergenic | 25.0% |
| !! | CTGATTTGAATAACAGAATA+CGG | - | chr5_4:16048377-16048396 | None:intergenic | 25.0% |
| ! | CTTGAAAAACAATTTGGATT+GGG | + | chr5_4:16048422-16048441 | Msa0840350:CDS | 25.0% |
| ! | AAATTTCCATCAATGATTGT+AGG | + | chr5_4:16048509-16048528 | Msa0840350:intron | 25.0% |
| GAATGATTCAAGATTAAGAG+AGG | + | chr5_4:16046204-16046223 | Msa0840350:intron | 30.0% | |
| AAAATCAACTGGTGTGATAA+TGG | - | chr5_4:16046403-16046422 | None:intergenic | 30.0% | |
| TAAATCTGAAAGAGGCTAAA+GGG | - | chr5_4:16046434-16046453 | None:intergenic | 30.0% | |
| TTAAATCTGAAAGAGGCTAA+AGG | - | chr5_4:16046435-16046454 | None:intergenic | 30.0% | |
| !!! | ATCAGTCACTTTTCTTCTTA+AGG | + | chr5_4:16046638-16046657 | Msa0840350:CDS | 30.0% |
| !!! | ATTCTTTGCTGCTTTTAATC+AGG | + | chr5_4:16046794-16046813 | Msa0840350:CDS | 30.0% |
| ACAAAGGATAAATACCTAAC+AGG | - | chr5_4:16046983-16047002 | None:intergenic | 30.0% | |
| TTCAGCAATAGTTACACAAA+TGG | - | chr5_4:16047389-16047408 | None:intergenic | 30.0% | |
| AAGATCAATGCCAACAAATA+TGG | + | chr5_4:16047415-16047434 | Msa0840350:CDS | 30.0% | |
| ATAGATCCATCCATATTTGT+TGG | - | chr5_4:16047428-16047447 | None:intergenic | 30.0% | |
| AAATATGGATGGATCTATGA+TGG | + | chr5_4:16047430-16047449 | Msa0840350:CDS | 30.0% | |
| ! | TGGATGCAATTTTTGTACTA+AGG | + | chr5_4:16047450-16047469 | Msa0840350:CDS | 30.0% |
| ! | GGATGCAATTTTTGTACTAA+GGG | + | chr5_4:16047451-16047470 | Msa0840350:CDS | 30.0% |
| ! | GTTTTGCTTCATCATTAACA+TGG | - | chr5_4:16047516-16047535 | None:intergenic | 30.0% |
| ! | ATTTGTTAGTATGCATAGAG+AGG | + | chr5_4:16047565-16047584 | Msa0840350:intron | 30.0% |
| TTGTTGTCCTAAGCAAAATA+GGG | - | chr5_4:16047634-16047653 | None:intergenic | 30.0% | |
| TGTAACCATTTAGGAAGATA+GGG | - | chr5_4:16047678-16047697 | None:intergenic | 30.0% | |
| ATGTAACCATTTAGGAAGAT+AGG | - | chr5_4:16047679-16047698 | None:intergenic | 30.0% | |
| CCAAAATCATGTAACCATTT+AGG | - | chr5_4:16047687-16047706 | None:intergenic | 30.0% | |
| ! | CCTAAATGGTTACATGATTT+TGG | + | chr5_4:16047684-16047703 | Msa0840350:intron | 30.0% |
| CAGATAAACCATGTATAAAG+AGG | - | chr5_4:16047755-16047774 | None:intergenic | 30.0% | |
| CTCTTTATACATGGTTTATC+TGG | + | chr5_4:16047753-16047772 | Msa0840350:intron | 30.0% | |
| !! | ATACATGGTTTATCTGGTTT+TGG | + | chr5_4:16047759-16047778 | Msa0840350:intron | 30.0% |
| !!! | GTTTCTGGTTTTCTGTTTTT+AGG | + | chr5_4:16047789-16047808 | Msa0840350:intron | 30.0% |
| TAATATACATCATACCCCTT+TGG | + | chr5_4:16047887-16047906 | Msa0840350:intron | 30.0% | |
| TGAAACTTATAGACTTATGG+GGG | - | chr5_4:16047928-16047947 | None:intergenic | 30.0% | |
| ATTCAAATCAGTGACAATGA+AGG | + | chr5_4:16048386-16048405 | Msa0840350:CDS | 30.0% | |
| TTCAAATCAGTGACAATGAA+GGG | + | chr5_4:16048387-16048406 | Msa0840350:CDS | 30.0% | |
| !! | CCAATCCAAATTGTTTTTCA+AGG | - | chr5_4:16048424-16048443 | None:intergenic | 30.0% |
| CCTTGAAAAACAATTTGGAT+TGG | + | chr5_4:16048421-16048440 | Msa0840350:CDS | 30.0% | |
| ATCATTCAATGGAATACATG+AGG | - | chr5_4:16048717-16048736 | None:intergenic | 30.0% | |
| AAGCTTAGTTGAAGAAAGTT+GGG | - | chr5_4:16048859-16048878 | None:intergenic | 30.0% | |
| ACATCCTTGACATTGTCATA+AGG | - | chr5_4:16046021-16046040 | None:intergenic | 35.0% | |
| TGAATGACTCCAAAGATGTT+TGG | + | chr5_4:16046040-16046059 | Msa0840350:CDS | 35.0% | |
| ! | AAGAAATTCTGAAGGAGAAC+AGG | + | chr5_4:16046286-16046305 | Msa0840350:CDS | 35.0% |
| ! | TAAAGACTTTGGAGAGATTC+TGG | + | chr5_4:16046452-16046471 | Msa0840350:CDS | 35.0% |
| ! | CTTTTCTTCTTAAGGATGCT+AGG | + | chr5_4:16046646-16046665 | Msa0840350:CDS | 35.0% |
| AAAGTGTGGCATGAATCATT+AGG | - | chr5_4:16046755-16046774 | None:intergenic | 35.0% | |
| TAATGATTCATGCCACACTT+TGG | + | chr5_4:16046754-16046773 | Msa0840350:CDS | 35.0% | |
| AATGATTCATGCCACACTTT+GGG | + | chr5_4:16046755-16046774 | Msa0840350:CDS | 35.0% | |
| ! | TGATGTCTATTTTGCCTGTT+AGG | + | chr5_4:16046966-16046985 | Msa0840350:intron | 35.0% |
| TCCTGAAATTGCTGAGTTTA+AGG | + | chr5_4:16047052-16047071 | Msa0840350:CDS | 35.0% | |
| ! | AAATTGCTGAGTTTAAGGCT+AGG | + | chr5_4:16047057-16047076 | Msa0840350:CDS | 35.0% |
| ! | CTTGCATTGACATCATCAAT+TGG | - | chr5_4:16047172-16047191 | None:intergenic | 35.0% |
| ! | TTGAGTTATCTGAGATCCTT+GGG | - | chr5_4:16047215-16047234 | None:intergenic | 35.0% |
| GATCTCAGATAACTCAACAA+GGG | + | chr5_4:16047218-16047237 | Msa0840350:CDS | 35.0% | |
| ATCTCAGATAACTCAACAAG+GGG | + | chr5_4:16047219-16047238 | Msa0840350:CDS | 35.0% | |
| ! | TCATTTTCTCACTCTTTCTG+AGG | + | chr5_4:16047258-16047277 | Msa0840350:CDS | 35.0% |
| TCTTACATGCATCACATGAT+TGG | - | chr5_4:16047284-16047303 | None:intergenic | 35.0% | |
| TCAATGCCAACAAATATGGA+TGG | + | chr5_4:16047419-16047438 | Msa0840350:CDS | 35.0% | |
| !! | ATTTTTGTACTAAGGGTGTG+AGG | + | chr5_4:16047458-16047477 | Msa0840350:CDS | 35.0% |
| TTAATGATGAAGCAAAACCC+AGG | + | chr5_4:16047518-16047537 | Msa0840350:CDS | 35.0% | |
| AATATCAACTCTACCTACCT+GGG | - | chr5_4:16047538-16047557 | None:intergenic | 35.0% | |
| AAATATCAACTCTACCTACC+TGG | - | chr5_4:16047539-16047558 | None:intergenic | 35.0% | |
| AGAGAGGATGCATTTGATTA+AGG | + | chr5_4:16047581-16047600 | Msa0840350:intron | 35.0% | |
| GAGAGGATGCATTTGATTAA+GGG | + | chr5_4:16047582-16047601 | Msa0840350:intron | 35.0% | |
| ! | TAGTCTTCCCTATTTTGCTT+AGG | + | chr5_4:16047624-16047643 | Msa0840350:intron | 35.0% |
| GTTGTTGTCCTAAGCAAAAT+AGG | - | chr5_4:16047635-16047654 | None:intergenic | 35.0% | |
| AAACTTATAGACTTATGGGG+GGG | - | chr5_4:16047926-16047945 | None:intergenic | 35.0% | |
| GAAACTTATAGACTTATGGG+GGG | - | chr5_4:16047927-16047946 | None:intergenic | 35.0% | |
| TATGTTTAGGTATAGGGTTG+AGG | + | chr5_4:16048070-16048089 | Msa0840350:intron | 35.0% | |
| !! | GATTGGTCATTTTCATCCAA+CGG | + | chr5_4:16048274-16048293 | Msa0840350:intron | 35.0% |
| ACACAACTTGATCCAGAATT+GGG | - | chr5_4:16048307-16048326 | None:intergenic | 35.0% | |
| TTCAAAATCAAAGCTTGTCC+TGG | + | chr5_4:16048344-16048363 | Msa0840350:CDS | 35.0% | |
| ! | AAAACAATTTGGATTGGGAG+AGG | + | chr5_4:16048427-16048446 | Msa0840350:CDS | 35.0% |
| ! | GTTGCTAGTTCTTAAACACT+TGG | - | chr5_4:16048665-16048684 | None:intergenic | 35.0% |
| ATTGCTGCACAATCATTCAA+TGG | - | chr5_4:16048728-16048747 | None:intergenic | 35.0% | |
| CAAGCTTAGTTGAAGAAAGT+TGG | - | chr5_4:16048860-16048879 | None:intergenic | 35.0% | |
| ATCTATGTAAGCCCACTGTT+AGG | + | chr5_4:16045962-16045981 | Msa0840350:CDS | 40.0% | |
| TCGTCCTTATGACAATGTCA+AGG | + | chr5_4:16046014-16046033 | Msa0840350:CDS | 40.0% | |
| AGCAAGACTCCAAACATCTT+TGG | - | chr5_4:16046052-16046071 | None:intergenic | 40.0% | |
| ! | ATGGATCTTTGGTGTGTTAC+TGG | + | chr5_4:16046081-16046100 | Msa0840350:CDS | 40.0% |
| CATTTAGCAACTTCCTCAGA+CGG | - | chr5_4:16046264-16046283 | None:intergenic | 40.0% | |
| GGTCTTCAAAAACGATGTTG+TGG | + | chr5_4:16046332-16046351 | Msa0840350:CDS | 40.0% | |
| ATCTTATGATTGTCCCCTTC+TGG | - | chr5_4:16046620-16046639 | None:intergenic | 40.0% | |
| TTCTTCTTAAGGATGCTAGG+TGG | + | chr5_4:16046649-16046668 | Msa0840350:intron | 40.0% | |
| TGCAAAATCATCCCAAAGTG+TGG | - | chr5_4:16046769-16046788 | None:intergenic | 40.0% | |
| !!! | GCTGCTTTTAATCAGGCAAA+TGG | + | chr5_4:16046801-16046820 | Msa0840350:CDS | 40.0% |
| TCATTGTTCTCAAGCATGTG+AGG | + | chr5_4:16046838-16046857 | Msa0840350:CDS | 40.0% | |
| CATTGTTCTCAAGCATGTGA+GGG | + | chr5_4:16046839-16046858 | Msa0840350:CDS | 40.0% | |
| !! | CAGGTATTGGTAACACACAA+AGG | - | chr5_4:16046999-16047018 | None:intergenic | 40.0% |
| CTTTGTGTGTTACCAATACC+TGG | + | chr5_4:16046997-16047016 | Msa0840350:CDS | 40.0% | |
| GCCTTAAACTCAGCAATTTC+AGG | - | chr5_4:16047056-16047075 | None:intergenic | 40.0% | |
| GGGTAAGTTGTGACAATTGT+TGG | - | chr5_4:16047195-16047214 | None:intergenic | 40.0% | |
| CAATTGTCACAACTTACCCA+AGG | + | chr5_4:16047196-16047215 | Msa0840350:CDS | 40.0% | |
| ! | GTTGAGTTATCTGAGATCCT+TGG | - | chr5_4:16047216-16047235 | None:intergenic | 40.0% |
| GGATCTCAGATAACTCAACA+AGG | + | chr5_4:16047217-16047236 | Msa0840350:CDS | 40.0% | |
| ACAAGGGGATATCATGTCTA+AGG | + | chr5_4:16047234-16047253 | Msa0840350:CDS | 40.0% | |
| AATGGCCAACTCAAATGTAG+AGG | + | chr5_4:16047487-16047506 | Msa0840350:CDS | 40.0% | |
| GGTTTCCTCTACATTTGAGT+TGG | - | chr5_4:16047495-16047514 | None:intergenic | 40.0% | |
| TCAGACCCTATCTTCCTAAA+TGG | + | chr5_4:16047670-16047689 | Msa0840350:intron | 40.0% | |
| !!! | GGTTACATGATTTTGGCTAC+TGG | + | chr5_4:16047691-16047710 | Msa0840350:intron | 40.0% |
| TACCAGTCCCTCTTTATACA+TGG | + | chr5_4:16047744-16047763 | Msa0840350:intron | 40.0% | |
| AACCATGTATAAAGAGGGAC+TGG | - | chr5_4:16047749-16047768 | None:intergenic | 40.0% | |
| TTAGGGCTGCAATTTGTGAT+AGG | + | chr5_4:16047807-16047826 | Msa0840350:intron | 40.0% | |
| TACCCCTTTGGTATGTATGT+AGG | + | chr5_4:16047899-16047918 | Msa0840350:intron | 40.0% | |
| GACCTACATACATACCAAAG+GGG | - | chr5_4:16047904-16047923 | None:intergenic | 40.0% | |
| GGACCTACATACATACCAAA+GGG | - | chr5_4:16047905-16047924 | None:intergenic | 40.0% | |
| TGAGGTTGAAGCTGTTTACA+AGG | + | chr5_4:16048088-16048107 | Msa0840350:CDS | 40.0% | |
| AATGATGTTGCATCCATCGT+AGG | + | chr5_4:16048140-16048159 | Msa0840350:CDS | 40.0% | |
| CAATTGTTCTTTCAGCTCCT+CGG | - | chr5_4:16048174-16048193 | None:intergenic | 40.0% | |
| ! | GCTGAAAGAACAATTGGTTC+AGG | + | chr5_4:16048178-16048197 | Msa0840350:CDS | 40.0% |
| ACAACTTGATCCAGAATTGG+GGG | - | chr5_4:16048305-16048324 | None:intergenic | 40.0% | |
| CACAACTTGATCCAGAATTG+GGG | - | chr5_4:16048306-16048325 | None:intergenic | 40.0% | |
| CACACAACTTGATCCAGAAT+TGG | - | chr5_4:16048308-16048327 | None:intergenic | 40.0% | |
| AGTTGTGTGCCCAAAGAATA+AGG | + | chr5_4:16048319-16048338 | Msa0840350:CDS | 40.0% | |
| ! | AACTGGCCTACAATCATTGA+TGG | - | chr5_4:16048518-16048537 | None:intergenic | 40.0% |
| AACCTTCACCTCATCAAGAA+GGG | - | chr5_4:16048550-16048569 | None:intergenic | 40.0% | |
| AGGATCAGTTTCACCACAAA+GGG | - | chr5_4:16048751-16048770 | None:intergenic | 40.0% | |
| AAGGATCAGTTTCACCACAA+AGG | - | chr5_4:16048752-16048771 | None:intergenic | 40.0% | |
| ! | TCTTCCTGGGAGTTTCTTTT+GGG | - | chr5_4:16048798-16048817 | None:intergenic | 40.0% |
| ! | ATCTTCCTGGGAGTTTCTTT+TGG | - | chr5_4:16048799-16048818 | None:intergenic | 40.0% |
| AACCCAATCAACATCTTCCT+GGG | - | chr5_4:16048811-16048830 | None:intergenic | 40.0% | |
| ! | TAGTTCTTTGGCTCCAACTT+GGG | - | chr5_4:16048891-16048910 | None:intergenic | 40.0% |
| ! | TTAGTTCTTTGGCTCCAACT+TGG | - | chr5_4:16048892-16048911 | None:intergenic | 40.0% |
| CCCTTGTTCATCCTAACAGT+GGG | - | chr5_4:16045976-16045995 | None:intergenic | 45.0% | |
| CCCACTGTTAGGATGAACAA+GGG | + | chr5_4:16045973-16045992 | Msa0840350:CDS | 45.0% | |
| TCCCTTGTTCATCCTAACAG+TGG | - | chr5_4:16045977-16045996 | None:intergenic | 45.0% | |
| ! | ATGTTTGGAGTCTTGCTGTG+AGG | + | chr5_4:16046055-16046074 | Msa0840350:CDS | 45.0% |
| ! | TGTTTGGAGTCTTGCTGTGA+GGG | + | chr5_4:16046056-16046075 | Msa0840350:CDS | 45.0% |
| GGAGATGGTGATTGCTGATA+AGG | + | chr5_4:16046128-16046147 | Msa0840350:CDS | 45.0% | |
| GATGGTGATTGCTGATAAGG+AGG | + | chr5_4:16046131-16046150 | Msa0840350:CDS | 45.0% | |
| CGTCTGAGGAAGTTGCTAAA+TGG | + | chr5_4:16046262-16046281 | Msa0840350:CDS | 45.0% | |
| CCTGAAACTGCAAGTCTGAA+AGG | - | chr5_4:16046375-16046394 | None:intergenic | 45.0% | |
| CCTTTCAGACTTGCAGTTTC+AGG | + | chr5_4:16046372-16046391 | Msa0840350:CDS | 45.0% | |
| TCTGAAAGAGGCTAAAGGGA+TGG | - | chr5_4:16046430-16046449 | None:intergenic | 45.0% | |
| ! | AGATTCTGGCTGGAAACTAC+AGG | + | chr5_4:16046466-16046485 | Msa0840350:CDS | 45.0% |
| TACAGGACTGATCTGCTCAT+AGG | + | chr5_4:16046483-16046502 | Msa0840350:CDS | 45.0% | |
| GTGTGCTTACCAGATGTCAT+TGG | + | chr5_4:16046567-16046586 | Msa0840350:intron | 45.0% | |
| TGGAAAGCTCCAATGACATC+TGG | - | chr5_4:16046579-16046598 | None:intergenic | 45.0% | |
| TGTGTTACCAATACCTGGTC+TGG | + | chr5_4:16047002-16047021 | Msa0840350:CDS | 45.0% | |
| CTTAGTTCCAGACCAGGTAT+TGG | - | chr5_4:16047012-16047031 | None:intergenic | 45.0% | |
| ! | CAATACCTGGTCTGGAACTA+AGG | + | chr5_4:16047010-16047029 | Msa0840350:CDS | 45.0% |
| TATGACCTTAGTTCCAGACC+AGG | - | chr5_4:16047018-16047037 | None:intergenic | 45.0% | |
| ! | TTGTACTAAGGGTGTGAGGA+TGG | + | chr5_4:16047462-16047481 | Msa0840350:CDS | 45.0% |
| TGATGAAGCAAAACCCAGGT+AGG | + | chr5_4:16047522-16047541 | Msa0840350:intron | 45.0% | |
| !!! | GGTTTTGGAACTGCAGTTTC+TGG | + | chr5_4:16047774-16047793 | Msa0840350:intron | 45.0% |
| GGGACCTACATACATACCAA+AGG | - | chr5_4:16047906-16047925 | None:intergenic | 45.0% | |
| CGAGGAGCTGAAAGAACAAT+TGG | + | chr5_4:16048172-16048191 | Msa0840350:CDS | 45.0% | |
| ACAGAATACGGACTTGATCC+AGG | - | chr5_4:16048365-16048384 | None:intergenic | 45.0% | |
| !! | AAGAAGGGCAAGCTTTGAAC+TGG | - | chr5_4:16048535-16048554 | None:intergenic | 45.0% |
| AAAGCTTGCCCTTCTTGATG+AGG | + | chr5_4:16048539-16048558 | Msa0840350:CDS | 45.0% | |
| CAACCTTCACCTCATCAAGA+AGG | - | chr5_4:16048551-16048570 | None:intergenic | 45.0% | |
| ATTGTGCAGCAATCCCTTTG+TGG | + | chr5_4:16048735-16048754 | Msa0840350:intron | 45.0% | |
| ACTCCCAGGAAGATGTTGAT+TGG | + | chr5_4:16048805-16048824 | Msa0840350:CDS | 45.0% | |
| ! | CTCCCAGGAAGATGTTGATT+GGG | + | chr5_4:16048806-16048825 | Msa0840350:CDS | 45.0% |
| CAACCCAATCAACATCTTCC+TGG | - | chr5_4:16048812-16048831 | None:intergenic | 45.0% | |
| ! | CAGGAAGATGTTGATTGGGT+TGG | + | chr5_4:16048810-16048829 | Msa0840350:CDS | 45.0% |
| ! | TGGTTCTACACAAGATGTCG+AGG | + | chr5_4:16048830-16048849 | Msa0840350:CDS | 45.0% |
| !! | TATTTAAATTAATGTATTTA+AGG | - | chr5_4:16046169-16046188 | None:intergenic | 5.0% |
| GCCCACTGTTAGGATGAACA+AGG | + | chr5_4:16045972-16045991 | Msa0840350:CDS | 50.0% | |
| CTGTGAGGGTCATGGATCTT+TGG | + | chr5_4:16046070-16046089 | Msa0840350:CDS | 50.0% | |
| GTTCAGACAAGAGCAGCACT+TGG | + | chr5_4:16046107-16046126 | Msa0840350:CDS | 50.0% | |
| ACAAGAGCAGCACTTGGAGA+TGG | + | chr5_4:16046113-16046132 | Msa0840350:CDS | 50.0% | |
| GGGATGGCAGGAAAATCAAC+TGG | - | chr5_4:16046414-16046433 | None:intergenic | 50.0% | |
| AAAGAGGCTAAAGGGATGGC+AGG | - | chr5_4:16046426-16046445 | None:intergenic | 50.0% | |
| ! | GACTTTGGAGAGATTCTGGC+TGG | + | chr5_4:16046456-16046475 | Msa0840350:CDS | 50.0% |
| CAAGCATGTGAGGGTTAGAG+AGG | + | chr5_4:16046848-16046867 | Msa0840350:CDS | 50.0% | |
| ! | AAGGGTGTGAGGATGGACAA+TGG | + | chr5_4:16047469-16047488 | Msa0840350:CDS | 50.0% |
| AGAATTGGGGGATAAGCCGT+TGG | - | chr5_4:16048293-16048312 | None:intergenic | 50.0% | |
| AACGGCTTATCCCCCAATTC+TGG | + | chr5_4:16048292-16048311 | Msa0840350:CDS | 50.0% | |
| TGCCCTTCTTGATGAGGTGA+AGG | + | chr5_4:16048545-16048564 | Msa0840350:CDS | 50.0% | |
| !! | GGAGTTTCTTTTGGGAGGTG+GGG | - | chr5_4:16048790-16048809 | None:intergenic | 50.0% |
| !! | GGGAGTTTCTTTTGGGAGGT+GGG | - | chr5_4:16048791-16048810 | None:intergenic | 50.0% |
| !! | TGGGAGTTTCTTTTGGGAGG+TGG | - | chr5_4:16048792-16048811 | None:intergenic | 50.0% |
| ACCTCCCAAAAGAAACTCCC+AGG | + | chr5_4:16048791-16048810 | Msa0840350:CDS | 50.0% | |
| ! | TCCTGGGAGTTTCTTTTGGG+AGG | - | chr5_4:16048795-16048814 | None:intergenic | 50.0% |
| GCTTGCCAAACAACCCAAGT+TGG | + | chr5_4:16048875-16048894 | Msa0840350:CDS | 50.0% | |
| ! | TGGCTCCAACTTGGGTTGTT+TGG | - | chr5_4:16048883-16048902 | None:intergenic | 50.0% |
| ! | GAGTCTTGCTGTGAGGGTCA+TGG | + | chr5_4:16046062-16046081 | Msa0840350:CDS | 55.0% |
| ! | GTGAGGGTTAGAGAGGCACA+AGG | + | chr5_4:16046855-16046874 | Msa0840350:CDS | 55.0% |
| CTCGGCAGACATTCCTACGA+TGG | - | chr5_4:16048156-16048175 | None:intergenic | 55.0% | |
| CATCGTAGGAATGTCTGCCG+AGG | + | chr5_4:16048154-16048173 | Msa0840350:CDS | 55.0% | |
| CCTCAGACGGAACAGTCAGC+TGG | - | chr5_4:16046251-16046270 | None:intergenic | 60.0% | |
| CCAGCTGACTGTTCCGTCTG+AGG | + | chr5_4:16046248-16046267 | Msa0840350:CDS | 60.0% | |
| GGGGTTGCAGAACTGCAGGA+AGG | - | chr5_4:16048771-16048790 | None:intergenic | 60.0% | |
| AGGTGGGGTTGCAGAACTGC+AGG | - | chr5_4:16048775-16048794 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16045928 | 16048911 | 16045928 | ID=Msa0840350;Name=Msa0840350 |
| chr5_4 | mRNA | 16045928 | 16048911 | 16045928 | ID=Msa0840350-mRNA-1;Parent=Msa0840350;Name=Msa0840350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|11|0|549 |
| chr5_4 | exon | 16045928 | 16046152 | 16045928 | ID=Msa0840350-mRNA-1:exon:6871;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16046237 | 16046504 | 16046237 | ID=Msa0840350-mRNA-1:exon:6872;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16046580 | 16046667 | 16046580 | ID=Msa0840350-mRNA-1:exon:6873;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16046749 | 16046876 | 16046749 | ID=Msa0840350-mRNA-1:exon:6874;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16046988 | 16047078 | 16046988 | ID=Msa0840350-mRNA-1:exon:6875;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16047156 | 16047297 | 16047156 | ID=Msa0840350-mRNA-1:exon:6876;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16047382 | 16047539 | 16047382 | ID=Msa0840350-mRNA-1:exon:6877;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16048079 | 16048199 | 16048079 | ID=Msa0840350-mRNA-1:exon:6878;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16048275 | 16048448 | 16048275 | ID=Msa0840350-mRNA-1:exon:6879;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16048531 | 16048617 | 16048531 | ID=Msa0840350-mRNA-1:exon:6880;Parent=Msa0840350-mRNA-1 |
| chr5_4 | exon | 16048744 | 16048911 | 16048744 | ID=Msa0840350-mRNA-1:exon:6881;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16045928 | 16046152 | 16045928 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16046237 | 16046504 | 16046237 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16046580 | 16046667 | 16046580 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16046749 | 16046876 | 16046749 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16046988 | 16047078 | 16046988 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16047156 | 16047297 | 16047156 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16047382 | 16047539 | 16047382 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16048079 | 16048199 | 16048079 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16048275 | 16048448 | 16048275 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16048531 | 16048617 | 16048531 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| chr5_4 | CDS | 16048744 | 16048911 | 16048744 | ID=Msa0840350-mRNA-1:cds;Parent=Msa0840350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
