AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842200 MtrunA17_Chr5g0412131 90.295 474 45 1 1 473 1 474 0.0 875
Msa0842200 MtrunA17_Chr5g0412101 84.632 475 71 2 1 473 1 475 0.0 824
Msa0842200 MtrunA17_Chr5g0412111 80.472 466 87 3 10 473 3 466 0.0 783
Msa0842200 MtrunA17_Chr3g0092641 39.085 481 262 14 8 468 8 477 1.86e-98 304
Msa0842200 MtrunA17_Chr5g0426431 39.877 489 247 16 8 468 8 477 2.56e-98 304
Msa0842200 MtrunA17_Chr3g0118691 35.714 476 287 9 8 468 11 482 1.52e-95 297
Msa0842200 MtrunA17_Chr3g0118671 35.443 474 277 11 12 465 6 470 6.25e-94 292
Msa0842200 MtrunA17_Chr4g0050341 35.404 483 287 11 7 469 14 491 1.09e-93 292
Msa0842200 MtrunA17_Chr6g0454191 37.083 480 272 13 11 468 9 480 1.37e-93 291
Msa0842200 MtrunA17_Chr3g0118771 34.990 483 271 10 11 466 20 486 2.82e-93 291
Msa0842200 MtrunA17_Chr2g0278711 36.920 474 276 12 11 468 10 476 2.98e-92 288
Msa0842200 MtrunA17_Chr3g0118711 35.041 488 289 11 1 468 1 480 8.83e-92 287
Msa0842200 MtrunA17_Chr3g0118661 36.701 485 259 14 11 466 12 477 1.06e-91 287
Msa0842200 MtrunA17_Chr3g0118701 35.146 478 283 10 8 466 11 480 1.55e-91 286
Msa0842200 MtrunA17_Chr6g0454121 35.464 485 273 11 8 466 6 476 2.97e-91 285
Msa0842200 MtrunA17_Chr6g0454401 35.417 480 280 11 11 468 9 480 5.60e-91 285
Msa0842200 MtrunA17_Chr6g0454261 34.356 489 280 12 7 468 5 479 7.29e-91 285
Msa0842200 MtrunA17_Chr6g0454141 35.366 492 269 12 8 468 6 479 2.99e-90 283
Msa0842200 MtrunA17_Chr6g0454131 37.267 483 267 15 8 466 6 476 6.04e-90 282
Msa0842200 MtrunA17_Chr6g0454331 34.025 482 289 11 9 468 4 478 6.52e-90 282
Msa0842200 MtrunA17_Chr6g0454291 35.729 487 272 12 9 468 4 476 2.01e-89 281
Msa0842200 MtrunA17_Chr7g0217881 36.287 474 265 10 11 468 9 461 4.00e-89 280
Msa0842200 MtrunA17_Chr6g0453951 33.747 483 291 12 7 468 52 526 1.44e-88 280
Msa0842200 MtrunA17_Chr6g0454181 34.511 481 288 12 8 468 6 479 1.59e-88 278
Msa0842200 MtrunA17_Chr8g0359821 33.820 479 292 11 8 468 6 477 3.59e-88 278
Msa0842200 MtrunA17_Chr6g0453961 33.063 493 280 13 8 468 15 489 7.98e-88 277
Msa0842200 MtrunA17_Chr6g0454301 35.579 475 283 12 11 468 262 730 4.88e-87 281
Msa0842200 MtrunA17_Chr6g0454301 40.969 227 130 3 242 466 3 227 2.77e-51 185
Msa0842200 MtrunA17_Chr3g0078841 33.895 475 291 12 9 466 7 475 2.45e-86 273
Msa0842200 MtrunA17_Chr6g0452771 35.197 483 282 12 8 468 6 479 2.98e-86 273
Msa0842200 MtrunA17_Chr6g0454361 34.855 482 283 13 7 466 6 478 1.94e-85 271
Msa0842200 MtrunA17_Chr6g0454341 33.472 481 281 12 11 466 9 475 1.30e-83 266
Msa0842200 MtrunA17_Chr8g0336331 33.051 472 296 10 12 468 10 476 1.42e-83 266
Msa0842200 MtrunA17_Chr6g0454151 34.497 487 280 14 7 468 5 477 6.11e-83 264
Msa0842200 MtrunA17_Chr6g0454201 35.950 484 279 14 7 468 6 480 9.73e-83 263
Msa0842200 MtrunA17_Chr3g0118751 33.333 477 258 10 11 466 5 442 1.58e-82 262
Msa0842200 MtrunA17_Chr6g0454211 34.292 487 275 12 11 468 296 766 5.75e-82 269
Msa0842200 MtrunA17_Chr6g0454211 33.588 262 135 6 132 387 8 236 1.38e-38 149
Msa0842200 MtrunA17_Chr5g0423981 35.043 468 268 14 8 468 6 444 9.08e-82 260
Msa0842200 MtrunA17_Chr6g0454351 32.992 488 263 12 11 468 11 464 2.09e-81 259
Msa0842200 MtrunA17_Chr6g0454321 33.045 463 289 11 12 458 10 467 3.30e-79 259
Msa0842200 MtrunA17_Chr3g0112771 33.471 484 277 14 1 470 1 453 1.55e-78 252
Msa0842200 MtrunA17_Chr3g0112761 33.895 475 279 12 6 470 2 451 2.58e-73 238
Msa0842200 MtrunA17_Chr4g0032331 33.947 489 266 16 1 470 1 451 9.14e-71 231
Msa0842200 MtrunA17_Chr5g0426401 42.434 304 161 9 173 468 13 310 1.22e-70 227
Msa0842200 MtrunA17_Chr6g0454271 38.596 285 170 4 187 468 4 286 5.12e-68 219
Msa0842200 MtrunA17_Chr6g0454251 35.589 399 227 13 11 388 6 395 4.06e-67 220
Msa0842200 MtrunA17_Chr8g0380531 32.438 484 286 16 4 471 2 460 2.03e-63 212
Msa0842200 MtrunA17_Chr7g0218821 30.625 480 280 11 11 469 4 451 5.96e-63 211
Msa0842200 MtrunA17_Chr7g0218811 31.277 470 275 14 11 467 14 448 2.88e-62 209
Msa0842200 MtrunA17_Chr6g0464871 32.692 468 274 15 12 465 23 463 4.07e-62 209
Msa0842200 MtrunA17_Chr7g0218831 30.556 468 280 11 11 467 5 438 1.07e-61 207
Msa0842200 MtrunA17_Chr3g0118721 36.042 283 177 3 190 468 7 289 1.49e-61 202
Msa0842200 MtrunA17_Chr5g0414331 30.720 472 289 11 12 472 13 457 2.31e-61 207
Msa0842200 MtrunA17_Chr5g0414321 31.646 474 282 14 12 472 11 455 3.15e-61 207
Msa0842200 MtrunA17_Chr6g0464921 32.365 482 279 18 1 465 1 452 8.40e-61 205
Msa0842200 MtrunA17_Chr6g0464881 32.421 475 268 17 11 465 10 451 2.74e-60 204
Msa0842200 MtrunA17_Chr7g0250001 30.704 469 280 16 12 465 6 444 1.78e-58 199
Msa0842200 MtrunA17_Chr7g0218841 30.720 472 275 15 11 467 5 439 9.87e-58 197
Msa0842200 MtrunA17_Chr6g0464841 32.278 474 268 17 12 465 11 451 1.85e-57 196
Msa0842200 MtrunA17_Chr8g0377921 30.498 482 285 15 11 465 2 460 4.83e-57 196
Msa0842200 MtrunA17_Chr7g0249981 30.172 464 289 13 12 465 25 463 1.26e-56 195
Msa0842200 MtrunA17_Chr6g0464861 31.276 486 277 19 1 465 1 450 3.73e-56 193
Msa0842200 MtrunA17_Chr1g0207981 30.480 479 300 13 12 472 13 476 6.42e-56 193
Msa0842200 MtrunA17_Chr6g0454221 42.291 227 128 3 242 466 3 228 9.90e-56 187
Msa0842200 MtrunA17_Chr1g0207861 30.849 483 298 14 8 470 4 470 1.61e-54 189
Msa0842200 MtrunA17_Chr3g0121991 30.550 491 283 14 12 468 79 545 6.91e-54 189
Msa0842200 MtrunA17_Chr8g0355011 31.680 363 192 10 115 468 46 361 1.91e-53 183
Msa0842200 MtrunA17_Chr8g0366391 30.285 492 302 19 8 472 4 481 2.21e-53 186
Msa0842200 MtrunA17_Chr6g0454171 31.672 341 186 6 132 466 8 307 4.81e-53 181
Msa0842200 MtrunA17_Chr1g0161351 29.730 481 296 14 12 469 37 498 5.87e-53 186
Msa0842200 MtrunA17_Chr7g0249931 29.167 480 297 17 1 465 29 480 1.39e-52 184
Msa0842200 MtrunA17_Chr4g0044511 28.056 499 309 16 3 472 31 508 1.42e-52 185
Msa0842200 MtrunA17_Chr3g0122001 31.772 491 277 15 12 468 486 952 9.64e-52 188
Msa0842200 MtrunA17_Chr3g0122001 30.645 496 288 13 12 472 6 480 8.04e-51 185
Msa0842200 MtrunA17_Chr5g0401721 28.330 473 299 15 8 457 4 459 6.38e-51 179
Msa0842200 MtrunA17_Chr3g0098111 28.958 480 303 14 12 470 9 471 1.53e-50 179
Msa0842200 MtrunA17_Chr8g0347281 30.303 495 279 20 3 465 9 469 2.34e-50 178
Msa0842200 MtrunA17_Chr8g0365811 28.747 487 305 15 8 470 491 959 3.18e-50 184
Msa0842200 MtrunA17_Chr8g0365811 28.761 452 281 15 12 438 9 444 3.47e-46 172
Msa0842200 MtrunA17_Chr7g0265151 30.784 510 265 21 12 468 9 483 5.10e-50 177
Msa0842200 MtrunA17_Chr1g0207971 28.452 478 299 14 8 469 4 454 6.72e-50 176
Msa0842200 MtrunA17_Chr6g0462571 29.053 475 277 17 13 457 5 449 1.37e-49 176
Msa0842200 MtrunA17_Chr4g0053501 28.803 493 280 17 7 465 6 461 1.43e-49 176
Msa0842200 MtrunA17_Chr8g0377941 30.185 487 276 17 13 468 8 461 2.34e-49 175
Msa0842200 MtrunA17_Chr1g0179901 28.831 496 302 16 9 468 13 493 2.43e-48 173
Msa0842200 MtrunA17_Chr6g0462531 28.252 492 281 17 13 466 5 462 3.04e-48 172
Msa0842200 MtrunA17_Chr7g0218791 27.505 469 294 12 9 461 2 440 6.10e-48 171
Msa0842200 MtrunA17_Chr8g0347271 29.899 495 281 21 3 465 10 470 9.81e-48 171
Msa0842200 MtrunA17_Chr4g0053321 29.053 475 302 14 7 465 21 476 1.36e-47 171
Msa0842200 MtrunA17_Chr1g0207951 29.583 480 284 16 12 469 124 571 3.96e-47 175
Msa0842200 MtrunA17_Chr1g0207951 28.942 463 291 15 12 457 656 1097 3.32e-45 169
Msa0842200 MtrunA17_Chr4g0044501 30.943 488 288 20 12 470 10 477 4.44e-47 169
Msa0842200 MtrunA17_Chr5g0401851 27.400 500 314 17 2 470 4 485 5.02e-47 169
Msa0842200 MtrunA17_Chr7g0265041 27.856 499 299 15 11 468 10 488 1.02e-46 169
Msa0842200 MtrunA17_Chr7g0243631 27.800 500 296 17 12 470 13 488 4.66e-46 167
Msa0842200 MtrunA17_Chr5g0429711 29.730 481 292 18 12 472 11 465 8.30e-46 166
Msa0842200 MtrunA17_Chr5g0419771 29.225 503 300 18 9 473 33 517 1.35e-45 166
Msa0842200 MtrunA17_Chr1g0207831 27.484 473 310 10 13 469 9 464 3.12e-45 164
Msa0842200 MtrunA17_Chr7g0275511 29.637 496 285 20 4 465 7 472 3.39e-45 164
Msa0842200 MtrunA17_Chr5g0431441 28.178 472 300 13 12 468 18 465 3.46e-45 164
Msa0842200 MtrunA17_Chr7g0275681 28.947 494 291 18 11 468 11 480 6.30e-45 163
Msa0842200 MtrunA17_Chr7g0243681 27.734 512 297 21 1 470 1 481 6.88e-45 164
Msa0842200 MtrunA17_Chr2g0307961 28.513 491 305 12 1 468 1 468 8.32e-45 163
Msa0842200 MtrunA17_Chr6g0462551 28.452 478 279 18 13 457 5 452 8.75e-45 163
Msa0842200 MtrunA17_Chr4g0011051 27.328 494 307 16 12 468 9 487 2.41e-44 162
Msa0842200 MtrunA17_Chr5g0393591 29.053 475 271 14 12 472 17 439 6.18e-44 160
Msa0842200 MtrunA17_Chr1g0159551 28.024 496 284 15 4 468 6 459 7.90e-44 160
Msa0842200 MtrunA17_Chr6g0454371 42.353 170 96 2 301 468 1 170 1.55e-43 151
Msa0842200 MtrunA17_Chr3g0079731 27.490 502 286 15 13 466 7 478 3.85e-43 159
Msa0842200 MtrunA17_Chr7g0265111 28.431 510 307 18 1 471 28 518 6.43e-43 159
Msa0842200 MtrunA17_Chr8g0382021 27.926 487 279 19 17 468 39 488 7.51e-43 158
Msa0842200 MtrunA17_Chr6g0462541 26.964 471 294 14 13 457 5 451 7.54e-43 158
Msa0842200 MtrunA17_Chr8g0361371 27.833 503 282 18 7 465 2 467 1.87e-42 157
Msa0842200 MtrunA17_Chr6g0462521 26.793 474 297 14 13 466 5 448 2.13e-42 156
Msa0842200 MtrunA17_Chr7g0243931 27.435 503 315 16 1 470 7 492 5.05e-42 156
Msa0842200 MtrunA17_Chr8g0373301 30.446 381 220 14 115 472 112 470 7.52e-42 155
Msa0842200 MtrunA17_Chr5g0431401 27.766 479 288 15 12 470 10 450 8.25e-42 154
Msa0842200 MtrunA17_Chr5g0431361 28.306 484 282 18 12 470 12 455 1.13e-41 154
Msa0842200 MtrunA17_Chr4g0060511 26.613 496 310 14 12 470 11 489 1.91e-41 154
Msa0842200 MtrunA17_Chr7g0265101 27.327 505 292 19 12 468 9 486 2.15e-41 154
Msa0842200 MtrunA17_Chr8g0335141 27.629 485 304 17 11 470 8 470 2.50e-41 153
Msa0842200 MtrunA17_Chr5g0442601 27.290 513 290 23 5 468 397 875 3.44e-41 157
Msa0842200 MtrunA17_Chr5g0442601 29.874 318 156 12 115 408 62 336 3.01e-29 121
Msa0842200 MtrunA17_Chr7g0243951 27.381 504 313 19 1 470 1 485 3.67e-41 153
Msa0842200 MtrunA17_Chr1g0173121 28.261 506 273 19 4 468 6 462 3.76e-41 153
Msa0842200 MtrunA17_Chr6g0459311 27.292 480 293 17 15 465 16 468 4.72e-41 153
Msa0842200 MtrunA17_Chr8g0334831 29.345 443 234 16 13 413 7 412 9.82e-41 152
Msa0842200 MtrunA17_Chr4g0066151 25.549 501 314 17 1 469 7 480 1.67e-40 151
Msa0842200 MtrunA17_Chr6g0486251 27.950 483 290 19 13 465 7 461 1.92e-40 151
Msa0842200 MtrunA17_Chr6g0486201 27.950 483 290 19 13 465 7 461 1.92e-40 151
Msa0842200 MtrunA17_Chr5g0442541 27.016 496 288 18 12 468 5 465 2.24e-40 150
Msa0842200 MtrunA17_Chr3g0106231 29.158 487 276 20 5 468 11 451 2.37e-40 151
Msa0842200 MtrunA17_Chr5g0419761 27.755 490 308 15 12 468 9 485 2.40e-40 151
Msa0842200 MtrunA17_Chr8g0334851 34.028 288 147 7 212 472 202 473 2.46e-40 151
Msa0842200 MtrunA17_Chr4g0014061 26.815 496 294 15 13 470 10 474 3.37e-40 150
Msa0842200 MtrunA17_Chr7g0265141 26.411 496 303 11 12 466 9 483 4.70e-40 150
Msa0842200 MtrunA17_Chr5g0442581 29.051 506 274 23 13 468 6 476 5.03e-40 151
Msa0842200 MtrunA17_Chr1g0207931 32.819 259 160 4 221 469 244 498 5.11e-40 150
Msa0842200 MtrunA17_Chr7g0243871 26.145 524 283 16 1 470 1 474 6.71e-40 150
Msa0842200 MtrunA17_Chr7g0243781 25.838 507 309 17 1 470 1 477 7.56e-40 149
Msa0842200 MtrunA17_Chr5g0448551 26.807 429 291 9 11 433 6 417 8.68e-40 149
Msa0842200 MtrunA17_Chr6g0463891 27.237 503 316 17 1 470 1 486 1.06e-39 149
Msa0842200 MtrunA17_Chr8g0335161 27.349 479 300 19 12 464 6 462 4.99e-39 147
Msa0842200 MtrunA17_Chr5g0429681 28.719 484 282 22 13 465 45 496 5.76e-39 147
Msa0842200 MtrunA17_Chr7g0243771 26.854 499 306 16 8 470 2 477 7.09e-39 147
Msa0842200 MtrunA17_Chr7g0249961 36.715 207 122 4 272 473 62 264 7.39e-39 142
Msa0842200 MtrunA17_Chr5g0440421 30.159 504 287 23 11 468 9 493 1.01e-38 147
Msa0842200 MtrunA17_Chr8g0336651 29.630 378 220 13 106 457 875 1232 3.40e-38 149
Msa0842200 MtrunA17_Chr8g0336651 30.245 367 215 13 106 451 100 446 1.96e-34 137
Msa0842200 MtrunA17_Chr8g0336651 33.203 256 132 9 218 464 545 770 6.25e-33 133
Msa0842200 MtrunA17_Chr5g0431371 27.423 485 282 16 12 470 10 450 5.10e-38 144
Msa0842200 MtrunA17_Chr8g0339461 33.700 273 143 9 218 464 207 467 6.12e-38 144
Msa0842200 MtrunA17_Chr4g0072771 26.371 474 303 18 12 470 25 467 7.73e-38 144
Msa0842200 MtrunA17_Chr7g0243761 27.406 478 296 16 12 470 11 456 1.06e-37 143
Msa0842200 MtrunA17_Chr8g0339601 31.636 275 151 8 209 458 57 319 1.10e-37 140
Msa0842200 MtrunA17_Chr4g0044481 28.434 415 247 10 7 410 22 397 1.39e-37 142
Msa0842200 MtrunA17_Chr5g0431421 27.197 478 292 13 12 470 10 450 1.66e-37 142
Msa0842200 MtrunA17_Chr5g0448521 27.525 505 274 20 13 468 6 467 1.88e-37 142
Msa0842200 MtrunA17_Chr8g0339631 28.610 367 219 13 115 457 110 457 1.91e-37 143
Msa0842200 MtrunA17_Chr8g0336691 30.457 394 212 16 103 465 1014 1376 2.13e-37 146
Msa0842200 MtrunA17_Chr8g0336691 28.067 481 294 21 12 464 13 469 6.51e-37 145
Msa0842200 MtrunA17_Chr8g0336691 31.118 331 184 13 137 457 605 901 7.40e-33 132
Msa0842200 MtrunA17_Chr7g0232401 29.226 349 203 11 124 445 120 451 2.37e-37 142
Msa0842200 MtrunA17_Chr6g0463851 27.183 504 288 18 13 469 12 483 2.95e-37 142
Msa0842200 MtrunA17_Chr4g0072761 27.101 476 294 18 12 470 15 454 3.13e-37 142
Msa0842200 MtrunA17_Chr6g0454231 32.540 252 129 5 217 466 4 216 3.95e-37 142
Msa0842200 MtrunA17_Chr6g0454231 29.237 236 143 10 11 229 249 477 1.15e-15 79.3
Msa0842200 MtrunA17_Chr6g0453941 31.776 321 148 9 11 329 10 261 5.13e-37 137
Msa0842200 MtrunA17_Chr4g0066201 25.833 480 310 13 13 469 19 475 5.42e-37 142
Msa0842200 MtrunA17_Chr6g0463861 26.122 490 296 17 13 466 12 471 6.96e-37 141
Msa0842200 MtrunA17_Chr7g0243801 26.200 500 310 16 7 470 2 478 9.84e-37 141
Msa0842200 MtrunA17_Chr4g0066261 26.587 504 301 17 13 473 12 489 1.79e-36 140
Msa0842200 MtrunA17_Chr5g0442491 27.255 510 276 22 13 468 6 474 1.89e-36 140
Msa0842200 MtrunA17_Chr7g0235051 26.337 486 293 16 1 461 1 446 1.99e-36 140
Msa0842200 MtrunA17_Chr4g0066221 26.389 504 290 19 13 469 12 481 2.03e-36 140
Msa0842200 MtrunA17_Chr2g0329111 28.037 428 240 17 13 404 7 402 2.18e-36 140
Msa0842200 MtrunA17_Chr7g0243861 24.848 495 317 15 12 470 14 489 3.06e-36 140
Msa0842200 MtrunA17_Chr7g0232391 26.899 487 293 17 12 465 6 462 3.16e-36 139
Msa0842200 MtrunA17_Chr4g0044521 25.673 483 314 16 7 466 4 464 3.35e-36 139
Msa0842200 MtrunA17_Chr4g0066131 24.902 510 306 14 1 469 2 475 3.49e-36 139
Msa0842200 MtrunA17_Chr7g0232411 26.875 480 302 15 12 465 6 462 4.05e-36 139
Msa0842200 MtrunA17_Chr2g0294931 27.565 497 298 16 13 471 12 484 5.20e-36 139
Msa0842200 MtrunA17_Chr8g0336261 44.928 138 71 2 301 435 1 136 6.71e-36 129
Msa0842200 MtrunA17_Chr5g0416741 25.251 499 329 16 1 470 2 485 8.54e-36 139
Msa0842200 MtrunA17_Chr5g0428081 26.869 495 298 14 13 469 12 480 1.26e-35 138
Msa0842200 MtrunA17_Chr4g0042891 33.455 275 148 9 212 466 204 463 1.46e-35 137
Msa0842200 MtrunA17_Chr2g0294921 26.113 494 297 15 17 469 165 631 1.50e-35 139
Msa0842200 MtrunA17_Chr7g0232331 26.898 461 291 15 12 448 6 444 1.98e-35 137
Msa0842200 MtrunA17_Chr8g0369341 27.273 495 297 16 9 469 4 469 2.41e-35 137
Msa0842200 MtrunA17_Chr8g0339441 38.119 202 103 6 278 457 217 418 2.52e-35 136
Msa0842200 MtrunA17_Chr4g0042931 27.291 491 285 18 12 466 7 461 2.56e-35 137
Msa0842200 MtrunA17_Chr8g0336731 28.941 387 223 14 106 465 126 487 3.11e-35 137
Msa0842200 MtrunA17_Chr7g0265051 26.061 495 309 19 12 468 9 484 4.25e-35 137
Msa0842200 MtrunA17_Chr5g0442561 26.316 494 301 16 12 468 5 472 4.94e-35 136
Msa0842200 MtrunA17_Chr5g0420801 27.071 495 288 19 9 469 4 459 5.48e-35 135
Msa0842200 MtrunA17_Chr8g0339451 28.919 370 217 14 115 457 102 452 5.56e-35 135
Msa0842200 MtrunA17_Chr4g0066281 31.579 285 162 7 211 469 190 467 6.79e-35 135
Msa0842200 MtrunA17_Chr6g0449931 32.677 254 129 7 218 445 206 443 8.24e-35 135
Msa0842200 MtrunA17_Chr8g0336741 32.567 261 144 9 219 459 213 461 8.30e-35 135
Msa0842200 MtrunA17_Chr6g0453981 38.049 205 116 5 132 329 8 208 1.24e-34 129
Msa0842200 MtrunA17_Chr5g0432731 28.990 307 190 7 171 465 3 293 2.17e-34 130
Msa0842200 MtrunA17_Chr2g0302961 26.884 491 277 18 19 466 12 463 2.63e-34 134
Msa0842200 MtrunA17_Chr8g0374941 26.008 496 293 18 12 465 951 1414 2.90e-34 137
Msa0842200 MtrunA17_Chr8g0374941 30.515 272 150 8 211 451 199 462 5.27e-30 124
Msa0842200 MtrunA17_Chr8g0374941 25.720 486 277 17 12 450 478 926 9.50e-29 120
Msa0842200 MtrunA17_Chr8g0374901 26.389 504 287 18 12 469 14 479 3.03e-34 134
Msa0842200 MtrunA17_Chr8g0374931 25.301 498 304 15 13 469 12 482 5.89e-34 133
Msa0842200 MtrunA17_Chr1g0153451 30.108 372 215 15 117 465 111 460 7.18e-34 132
Msa0842200 MtrunA17_Chr5g0410941 26.518 494 291 17 17 469 28 490 1.20e-33 132
Msa0842200 MtrunA17_Chr8g0334861 30.769 273 148 7 219 465 203 460 2.99e-33 131
Msa0842200 MtrunA17_Chr4g0066171 24.847 491 300 13 13 469 22 477 3.04e-33 131
Msa0842200 MtrunA17_Chr5g0442521 27.179 390 224 15 115 468 110 475 3.53e-33 131
Msa0842200 MtrunA17_Chr8g0355221 25.798 376 245 12 118 470 124 488 4.14e-33 131
Msa0842200 MtrunA17_Chr7g0232341 26.840 462 276 17 12 441 6 437 4.47e-33 130
Msa0842200 MtrunA17_Chr5g0442511 25.948 501 273 18 12 469 49 494 4.82e-33 130
Msa0842200 MtrunA17_Chr2g0302991 31.716 268 150 7 220 466 205 460 6.10e-33 130
Msa0842200 MtrunA17_Chr5g0403641 30.822 292 153 11 204 461 219 495 1.99e-32 129
Msa0842200 MtrunA17_Chr1g0165701 27.707 314 196 8 180 470 180 485 2.14e-32 129
Msa0842200 MtrunA17_Chr7g0243711 35.407 209 116 5 281 470 110 318 2.89e-32 125
Msa0842200 MtrunA17_Chr8g0374971 28.669 293 175 8 211 473 200 488 3.14e-32 128
Msa0842200 MtrunA17_Chr7g0218311 30.034 293 173 9 204 469 197 484 3.90e-32 128
Msa0842200 MtrunA17_Chr7g0241781 27.551 490 270 19 1 469 1 426 4.13e-32 127
Msa0842200 MtrunA17_Chr2g0294941 29.630 324 190 13 117 422 17 320 1.37e-31 124
Msa0842200 MtrunA17_Chr8g0370941 25.626 519 286 22 12 468 8 488 1.39e-31 127
Msa0842200 MtrunA17_Chr7g0232311 30.112 269 152 8 219 465 206 460 1.94e-31 125
Msa0842200 MtrunA17_Chr7g0243851 31.734 271 160 8 222 470 177 444 2.42e-31 125
Msa0842200 MtrunA17_Chr1g0153461 33.173 208 120 4 278 466 3 210 6.05e-31 119
Msa0842200 MtrunA17_Chr8g0350881 30.104 289 169 8 211 471 200 483 3.54e-30 122
Msa0842200 MtrunA17_Chr5g0416821 24.898 490 331 16 1 470 3 475 9.97e-30 121
Msa0842200 MtrunA17_Chr5g0431431 32.653 245 144 7 163 405 99 324 1.04e-29 119
Msa0842200 MtrunA17_Chr3g0106251 30.034 293 175 8 191 472 24 297 3.70e-29 116
Msa0842200 MtrunA17_Chr7g0243611 29.268 287 174 10 130 410 8 271 1.91e-28 114
Msa0842200 MtrunA17_Chr7g0241801 27.214 463 264 17 1 446 1 407 2.93e-28 116
Msa0842200 MtrunA17_Chr7g0243911 34.536 194 114 5 281 463 24 215 9.74e-28 110
Msa0842200 MtrunA17_Chr5g0409591 28.283 297 176 10 197 466 196 482 4.89e-27 113
Msa0842200 MtrunA17_Chr6g0482061 24.583 480 304 16 12 456 11 467 2.32e-26 111
Msa0842200 MtrunA17_Chr8g0357361 35.122 205 125 5 212 414 55 253 2.46e-26 107
Msa0842200 MtrunA17_Chr8g0367221 27.804 428 255 15 1 404 1 398 4.16e-26 112
Msa0842200 MtrunA17_Chr8g0367221 24.757 412 277 12 7 404 1283 1675 7.23e-24 105
Msa0842200 MtrunA17_Chr8g0367221 38.000 150 87 4 281 425 1058 1206 2.74e-21 97.8
Msa0842200 MtrunA17_Chr7g0243811 40.288 139 79 3 274 408 235 373 2.20e-25 107
Msa0842200 MtrunA17_Chr1g0196851 25.057 439 266 18 12 435 49 439 3.00e-24 105
Msa0842200 MtrunA17_Chr7g0231631 30.078 256 167 7 222 470 11 261 1.60e-23 99.8
Msa0842200 MtrunA17_Chr8g0361411 30.385 260 158 9 220 466 202 451 5.35e-23 101
Msa0842200 MtrunA17_Chr7g0232351 32.973 185 96 5 219 387 206 378 2.80e-22 98.2
Msa0842200 MtrunA17_Chr5g0426411 35.673 171 100 5 6 169 6 173 8.74e-22 92.4
Msa0842200 MtrunA17_Chr5g0427571 33.333 159 92 5 249 402 80 229 9.24e-22 95.5
Msa0842200 MtrunA17_Chr1g0207881 33.333 153 95 1 324 469 233 385 9.24e-22 97.1
Msa0842200 MtrunA17_Chr8g0336321 39.098 133 73 5 276 402 265 395 1.09e-21 97.4
Msa0842200 MtrunA17_Chr4g0066141 36.709 158 83 4 330 470 196 353 1.49e-21 95.9
Msa0842200 MtrunA17_Chr4g0040691 25.178 421 271 13 9 413 4 396 1.60e-21 97.1
Msa0842200 MtrunA17_Chr3g0079711 33.152 184 101 6 305 466 3 186 3.32e-21 91.3
Msa0842200 MtrunA17_Chr4g0069611 24.561 456 296 18 12 448 15 441 3.79e-21 95.9
Msa0842200 MtrunA17_Chr6g0464091 26.521 411 258 17 12 404 18 402 4.53e-21 95.9
Msa0842200 MtrunA17_Chr8g0336251 37.405 131 78 3 276 402 265 395 5.66e-21 95.5
Msa0842200 MtrunA17_Chr8g0337381 39.062 128 71 3 348 470 2 127 7.31e-21 88.6
Msa0842200 MtrunA17_Chr6g0454111 34.965 143 89 3 180 321 44 183 7.33e-21 90.1
Msa0842200 MtrunA17_Chr4g0040711 25.412 425 269 15 7 413 2 396 1.07e-20 94.4
Msa0842200 MtrunA17_Chr2g0278721 24.183 459 313 17 7 445 511 954 1.90e-20 95.1
Msa0842200 MtrunA17_Chr2g0278721 37.600 125 76 2 281 404 274 397 2.50e-17 85.1
Msa0842200 MtrunA17_Chr3g0092031 37.795 127 75 4 280 404 5 129 4.24e-20 88.6
Msa0842200 MtrunA17_Chr7g0250021 27.003 337 207 13 1 325 1 310 2.30e-19 89.0
Msa0842200 MtrunA17_Chr4g0029151 22.356 416 283 14 9 413 17 403 7.08e-19 89.0
Msa0842200 MtrunA17_Chr6g0466831 30.114 176 114 5 280 448 271 444 2.01e-18 87.8
Msa0842200 MtrunA17_Chr8g0334841 34.356 163 88 6 180 338 1 148 1.33e-17 80.5
Msa0842200 MtrunA17_Chr2g0278741 37.600 125 76 2 281 404 356 479 1.45e-17 85.5
Msa0842200 MtrunA17_Chr2g0283041 24.689 482 306 18 12 470 7 454 1.74e-17 84.7
Msa0842200 MtrunA17_Chr6g0466841 29.545 176 115 5 280 448 271 444 2.03e-17 84.7
Msa0842200 MtrunA17_Chr2g0302851 35.714 126 79 2 280 404 269 393 3.13e-17 84.0
Msa0842200 MtrunA17_Chr8g0336271 25.194 258 169 8 12 249 10 263 8.86e-17 80.5
Msa0842200 MtrunA17_Chr4g0039881 34.921 126 80 2 280 404 245 369 1.14e-16 82.0
Msa0842200 MtrunA17_Chr4g0029131 22.275 422 268 14 12 412 12 394 2.95e-16 81.6
Msa0842200 MtrunA17_Chr6g0454391 44.444 63 35 0 364 426 13 75 3.14e-13 66.6
Msa0842200 MtrunA17_Chr6g0469961 30.000 160 79 5 176 321 24 164 1.02e-12 66.2
Msa0842200 MtrunA17_Chr2g0319801 24.590 427 264 18 9 413 5 395 1.43e-12 69.3
Msa0842200 MtrunA17_Chr5g0427561 34.091 88 49 3 386 468 1 84 2.12e-12 63.2
Msa0842200 MtrunA17_Chr7g0243731 41.429 70 41 0 343 412 4 73 4.11e-12 62.0
Msa0842200 MtrunA17_Chr3g0118741 56.818 44 19 0 11 54 5 48 6.37e-12 61.2
Msa0842200 MtrunA17_Chr5g0442501 22.961 331 204 10 13 325 6 303 8.86e-12 66.2
Msa0842200 MtrunA17_Chr6g0454381 31.579 133 82 4 132 257 8 138 1.39e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842200 AT1G22380.1 37.370 479 275 11 8 468 9 480 9.39e-101 310
Msa0842200 AT1G22370.2 37.657 478 264 11 11 468 12 475 6.60e-94 293
Msa0842200 AT1G22400.1 34.238 479 279 10 11 465 12 478 3.42e-93 291
Msa0842200 AT1G22360.1 35.833 480 273 10 12 468 10 477 3.40e-92 288
Msa0842200 AT1G22360.2 35.491 479 264 11 12 468 10 465 1.26e-88 279
Msa0842200 AT1G22340.1 35.356 478 281 12 11 468 12 481 3.65e-87 275
Msa0842200 AT1G78270.1 35.443 474 285 12 11 468 12 480 2.38e-86 273
Msa0842200 AT3G11340.1 34.100 478 275 14 1 470 1 446 7.27e-79 253
Msa0842200 AT5G05900.1 34.029 479 253 14 13 468 9 447 4.32e-73 238
Msa0842200 AT5G05860.1 36.059 477 259 14 6 468 3 447 4.62e-72 235
Msa0842200 AT5G05880.1 34.096 481 257 15 12 470 8 450 6.59e-72 234
Msa0842200 AT3G55710.1 32.298 483 281 15 6 470 2 456 9.59e-71 232
Msa0842200 AT3G55700.1 32.017 481 281 14 6 470 2 452 2.26e-69 228
Msa0842200 AT3G46680.1 33.195 482 262 15 6 465 3 446 2.15e-68 225
Msa0842200 AT3G46660.1 34.025 482 276 14 1 470 6 457 3.20e-68 225
Msa0842200 AT3G46670.1 32.645 484 278 15 1 470 1 450 4.69e-68 224
Msa0842200 AT5G59590.1 32.353 476 277 15 4 465 2 446 5.09e-66 219
Msa0842200 AT5G05890.1 31.789 475 280 14 12 470 8 454 6.15e-65 216
Msa0842200 AT5G05870.1 31.828 487 274 12 6 468 2 454 7.34e-65 216
Msa0842200 AT5G38010.1 32.568 479 278 13 6 468 4 453 3.74e-64 214
Msa0842200 AT3G46720.1 31.458 480 274 15 6 470 3 442 4.93e-64 214
Msa0842200 AT3G46700.1 32.211 475 269 17 12 470 9 446 1.14e-63 213
Msa0842200 AT5G59580.1 31.635 471 278 15 12 469 9 448 7.86e-63 211
Msa0842200 AT3G46650.1 31.106 479 268 14 4 468 2 432 8.48e-63 210
Msa0842200 AT1G22370.1 40.066 302 172 6 173 468 7 305 1.22e-62 206
Msa0842200 AT5G38040.1 32.969 458 268 15 20 466 18 447 1.92e-62 210
Msa0842200 AT3G46690.1 31.933 476 274 14 12 470 9 451 2.00e-62 210
Msa0842200 AT3G02100.1 31.470 483 285 13 6 470 7 461 2.58e-62 210
Msa0842200 AT4G15480.1 30.189 477 296 11 12 468 19 478 9.28e-62 209
Msa0842200 AT2G26480.1 29.701 468 286 13 13 468 9 445 5.25e-59 201
Msa0842200 AT3G21560.1 30.691 492 293 17 1 466 1 470 5.50e-58 199
Msa0842200 AT4G15490.1 30.898 479 283 15 12 465 8 463 7.06e-57 196
Msa0842200 AT2G28080.1 29.268 451 289 12 17 452 23 458 8.45e-57 196
Msa0842200 AT2G43820.1 30.061 489 275 18 7 470 2 448 5.66e-55 190
Msa0842200 AT2G43840.2 29.560 477 291 16 7 469 2 447 1.06e-54 189
Msa0842200 AT2G36970.1 29.857 489 289 15 11 470 9 472 2.73e-54 189
Msa0842200 AT2G43840.1 29.792 480 286 18 7 469 2 447 2.97e-54 188
Msa0842200 AT2G31750.1 29.228 479 295 16 7 468 3 454 3.05e-54 188
Msa0842200 AT2G31750.2 29.228 479 295 16 7 468 3 454 7.00e-54 188
Msa0842200 AT4G15500.1 30.000 480 291 11 7 465 4 459 8.11e-54 187
Msa0842200 AT2G31790.1 27.859 481 295 16 7 465 3 453 3.01e-53 186
Msa0842200 AT5G17050.1 29.792 480 298 16 3 468 2 456 1.16e-52 184
Msa0842200 AT1G05675.1 29.747 474 291 11 8 465 2 449 4.84e-52 182
Msa0842200 AT2G23260.1 30.573 471 296 15 7 468 5 453 3.13e-51 180
Msa0842200 AT1G05680.1 29.461 482 282 12 8 465 2 449 9.28e-50 176
Msa0842200 AT5G17040.1 29.325 474 279 18 12 468 5 439 1.28e-49 176
Msa0842200 AT2G23250.1 32.035 462 273 16 21 471 7 438 1.58e-49 175
Msa0842200 AT5G17030.1 28.571 483 296 13 3 468 5 455 1.63e-49 176
Msa0842200 AT4G34138.1 28.807 486 291 15 5 457 4 467 1.74e-49 176
Msa0842200 AT1G01420.1 30.361 471 277 15 7 451 3 448 2.77e-49 176
Msa0842200 AT1G01420.2 30.361 471 277 15 7 451 6 451 3.25e-49 176
Msa0842200 AT2G15480.1 29.328 491 289 19 12 466 10 478 6.40e-49 175
Msa0842200 AT4G15550.1 28.257 499 278 17 9 465 10 470 7.89e-49 174
Msa0842200 AT1G30530.1 29.622 476 295 15 3 468 5 450 8.18e-49 174
Msa0842200 AT1G05560.2 29.376 497 281 18 2 468 45 501 1.01e-48 175
Msa0842200 AT1G05560.1 29.388 490 276 18 9 468 2 451 3.71e-48 172
Msa0842200 AT1G05530.1 29.124 491 279 17 9 468 2 454 4.76e-48 172
Msa0842200 AT2G15480.2 29.026 503 285 21 12 466 10 488 9.58e-48 172
Msa0842200 AT1G24100.1 28.630 489 294 14 2 468 3 458 1.41e-47 171
Msa0842200 AT5G17040.2 33.333 306 180 9 170 468 49 337 1.55e-47 167
Msa0842200 AT3G16520.3 31.694 366 215 14 115 466 113 457 2.18e-47 170
Msa0842200 AT4G01070.1 29.175 473 277 15 6 448 2 446 4.49e-47 169
Msa0842200 AT2G15490.3 29.268 492 288 19 12 466 7 475 4.96e-47 169
Msa0842200 AT2G36760.1 28.088 502 301 17 12 472 14 496 1.33e-46 169
Msa0842200 AT2G15490.1 29.435 496 285 20 12 466 7 478 3.43e-46 167
Msa0842200 AT3G16520.2 33.010 309 180 11 115 414 113 403 3.58e-46 166
Msa0842200 AT3G16520.1 33.010 309 180 11 115 414 113 403 4.90e-46 166
Msa0842200 AT2G36780.1 28.291 509 303 17 1 468 1 488 5.10e-46 167
Msa0842200 AT5G26310.1 28.659 492 277 20 9 461 4 460 9.02e-46 166
Msa0842200 AT2G36750.1 28.994 507 277 20 12 468 10 483 1.79e-45 166
Msa0842200 AT2G36770.1 27.955 533 282 21 1 470 1 494 2.60e-45 165
Msa0842200 AT2G29710.1 26.556 482 309 15 13 471 6 465 5.61e-45 164
Msa0842200 AT4G34131.1 27.734 512 297 19 1 470 1 481 6.81e-44 161
Msa0842200 AT2G36800.1 27.912 498 305 18 8 468 7 487 7.34e-44 161
Msa0842200 AT1G01390.1 29.882 425 242 13 7 404 3 398 7.25e-43 158
Msa0842200 AT2G29730.1 24.948 485 319 15 12 473 5 467 8.36e-43 158
Msa0842200 AT1G01390.2 29.882 425 242 13 7 404 20 415 1.20e-42 158
Msa0842200 AT5G66690.1 27.755 490 284 16 9 461 4 460 1.24e-42 157
Msa0842200 AT2G30140.1 28.482 481 286 17 12 472 13 455 2.46e-42 156
Msa0842200 AT2G30140.2 28.482 481 285 17 12 472 13 454 2.81e-42 156
Msa0842200 AT4G14090.1 29.098 488 266 19 11 465 12 452 1.13e-41 154
Msa0842200 AT4G34135.1 27.383 493 304 15 12 470 11 483 1.37e-41 155
Msa0842200 AT3G21790.1 27.455 499 296 18 12 468 4 478 3.68e-40 151
Msa0842200 AT1G73880.1 27.515 487 293 16 12 470 14 468 9.58e-40 149
Msa0842200 AT3G53160.1 27.559 508 292 23 12 472 8 486 1.32e-39 149
Msa0842200 AT3G50740.1 27.291 502 285 21 9 465 4 470 2.15e-39 149
Msa0842200 AT5G03490.1 26.844 488 296 15 3 466 10 460 9.28e-39 147
Msa0842200 AT2G36790.1 27.778 504 300 21 12 472 13 495 1.08e-38 147
Msa0842200 AT3G22250.1 25.108 462 300 13 6 444 2 440 4.93e-38 144
Msa0842200 AT3G53150.1 27.255 521 282 19 12 468 22 509 3.25e-37 143
Msa0842200 AT2G30150.2 27.178 482 300 18 4 468 5 452 4.07e-37 142
Msa0842200 AT3G21760.1 27.857 420 248 12 12 399 4 400 1.28e-36 141
Msa0842200 AT2G30150.1 27.505 469 289 18 17 468 2 436 8.97e-36 138
Msa0842200 AT4G36770.1 27.083 480 275 21 12 452 4 447 1.21e-35 138
Msa0842200 AT2G29750.1 26.096 479 299 14 12 458 8 463 3.54e-35 137
Msa0842200 AT4G15280.2 25.749 501 305 16 6 466 30 503 7.23e-35 136
Msa0842200 AT5G14860.1 28.713 505 277 25 9 466 5 473 8.37e-35 136
Msa0842200 AT1G07250.1 27.088 491 276 17 13 457 7 461 8.72e-35 135
Msa0842200 AT3G21800.1 26.465 495 304 16 13 468 6 479 1.04e-34 135
Msa0842200 AT3G21780.1 26.526 426 262 12 12 413 4 402 1.59e-34 135
Msa0842200 AT4G15280.1 25.657 495 301 16 12 466 4 471 2.86e-34 134
Msa0842200 AT1G07240.1 31.090 312 168 12 169 457 177 464 6.83e-34 133
Msa0842200 AT1G51210.1 25.778 450 283 15 11 444 19 433 1.30e-33 132
Msa0842200 AT2G29740.1 25.833 480 300 15 12 458 8 464 1.56e-33 132
Msa0842200 AT4G15260.1 28.496 379 209 14 123 466 1 352 2.07e-33 130
Msa0842200 AT5G37950.2 33.096 281 158 9 113 387 81 337 1.38e-32 127
Msa0842200 AT5G37950.1 32.979 282 163 10 113 387 81 343 1.53e-31 124
Msa0842200 AT2G18570.1 26.200 500 276 22 11 461 4 459 8.41e-31 124
Msa0842200 AT1G07260.1 31.835 267 152 8 209 458 208 461 9.63e-31 124
Msa0842200 AT3G21750.1 25.549 501 303 15 12 473 4 473 2.52e-30 123
Msa0842200 AT1G10400.1 32.482 274 153 11 204 465 206 459 3.14e-28 117
Msa0842200 AT2G18560.1 29.450 309 161 15 192 461 79 369 5.63e-28 115
Msa0842200 AT5G12890.1 26.714 423 247 16 12 399 10 404 2.00e-27 115
Msa0842200 AT5G49690.1 26.931 479 295 18 12 470 10 453 2.37e-27 114
Msa0842200 AT2G16890.2 23.542 480 319 17 12 466 9 465 3.80e-26 111
Msa0842200 AT1G06000.1 31.061 264 154 8 220 465 177 430 1.06e-25 109
Msa0842200 AT2G16890.3 24.578 415 274 14 12 410 9 400 1.44e-24 105
Msa0842200 AT5G65550.1 24.350 423 283 11 3 412 2 400 2.94e-24 105
Msa0842200 AT2G22590.1 26.000 450 285 16 12 438 15 439 2.61e-22 99.8
Msa0842200 AT5G54010.1 23.981 417 265 13 12 413 6 385 5.11e-22 99.0
Msa0842200 AT4G01070.2 26.807 332 203 10 6 325 2 305 7.98e-22 97.1
Msa0842200 AT4G27570.1 24.344 419 258 15 12 412 7 384 1.61e-20 94.4
Msa0842200 AT4G27560.1 23.810 420 259 16 12 412 7 384 1.57e-19 91.3
Msa0842200 AT4G09500.2 25.325 462 283 18 12 454 6 424 6.06e-17 83.6
Msa0842200 AT1G64910.1 23.821 424 251 17 12 413 6 379 2.04e-16 81.6
Msa0842200 AT4G34135.2 23.512 336 215 12 12 325 11 326 3.77e-15 77.0
Msa0842200 AT5G54060.1 23.878 490 318 17 7 470 8 468 1.31e-14 76.3
Msa0842200 AT3G29630.1 23.656 465 290 16 12 454 6 427 1.36e-14 76.3
Msa0842200 AT5G53990.1 29.508 183 118 4 281 454 244 424 2.07e-14 75.5
Msa0842200 AT4G09500.1 29.775 178 110 6 288 454 226 399 6.19e-12 67.8

Find 116 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAAGTTGCATTATTT+TGG 0.129986 5_4:-19187430 Msa0842200:CDS
AGGGCAAAATTCACATCTTA+TGG 0.156636 5_4:+19185611 None:intergenic
TCTTCCAAGTTTCCGTAAAA+TGG 0.190982 5_4:-19186455 Msa0842200:CDS
CTAACCCAACAATTAATTAA+AGG 0.194871 5_4:-19186397 Msa0842200:CDS
CTGTTAGTGCTTGTTGCTTT+TGG 0.225882 5_4:-19187338 Msa0842200:CDS
TGTAAAGAATTTAAAATTCT+AGG 0.230480 5_4:-19185337 Msa0842200:three_prime_UTR
TTTATCTGTTCCAAAGCTTT+TGG 0.240602 5_4:-19187310 Msa0842200:CDS
TCAGAGTTATATACCTCTAA+TGG 0.246805 5_4:+19187272 None:intergenic
TTTAGATGCAAGAAAGTTAT+AGG 0.258632 5_4:-19187818 Msa0842200:five_prime_UTR
ACTGATTTGGCTGCTGAGTT+TGG 0.266869 5_4:-19187384 Msa0842200:CDS
GTGAGTGAGGTTTGGAGAAT+TGG 0.287683 5_4:-19185824 Msa0842200:CDS
ATAACATTCATGTTCCCTTT+AGG 0.289951 5_4:-19185398 Msa0842200:three_prime_UTR
AAGATTTAGTTCAATATATA+AGG 0.292982 5_4:-19185643 Msa0842200:CDS
GAGGAGAAGCATCCTGGATT+TGG 0.312050 5_4:-19187528 Msa0842200:CDS
GTAGTCTCGTAAAATTATTT+AGG 0.328428 5_4:-19185425 Msa0842200:three_prime_UTR
GAGAAGAAATACTTGAGATT+TGG 0.328817 5_4:-19186120 Msa0842200:CDS
CCAAACATGGTACAAGAAAA+AGG 0.331017 5_4:-19186052 Msa0842200:CDS
CTGATTTGGCTGCTGAGTTT+GGG 0.334780 5_4:-19187383 Msa0842200:CDS
AAGTACAACCTTGTCTAATA+TGG 0.344130 5_4:+19186420 None:intergenic
TTATATATTGAACTAAATCT+TGG 0.345513 5_4:+19185645 None:intergenic
TGGTGATCTTGCTACTGATT+TGG 0.352180 5_4:-19187397 Msa0842200:CDS
TGTTAGATCAGCAATGGATA+TGG 0.357787 5_4:-19185720 Msa0842200:CDS
CTGATCAACAAATTAATAGT+AGG 0.360356 5_4:-19185850 Msa0842200:CDS
CACAGTGAGGAGAAGCATCC+TGG 0.364154 5_4:-19187534 Msa0842200:CDS
GTGTGTTTGGATGAGGTAAT+AGG 0.364728 5_4:-19185365 Msa0842200:three_prime_UTR
TGAGTGAGGTTTGGAGAATT+GGG 0.369652 5_4:-19185823 Msa0842200:CDS
AGGGCCAATGGTGTAGAGTC+TGG 0.370603 5_4:+19186303 None:intergenic
TGTGGAGTTATATGTGTATA+AGG 0.373549 5_4:+19187847 None:intergenic
CTTTGGAGAGTGTGGTTTGT+GGG 0.379040 5_4:-19185901 Msa0842200:CDS
TAAATCTTGGAAGTTGTTGT+AGG 0.383386 5_4:+19185658 None:intergenic
TCATTGCACTCCAAAAGCTT+TGG 0.388796 5_4:+19187300 None:intergenic
GTAGGTTTGTGAGTGAGGTT+TGG 0.393510 5_4:-19185832 Msa0842200:CDS
CATTGCCTTTAATTAATTGT+TGG 0.394969 5_4:+19186392 None:intergenic
CAGAGTTATATACCTCTAAT+GGG 0.395783 5_4:+19187273 None:intergenic
CACTTCAAAGAAATTGCTCT+TGG 0.397838 5_4:+19186228 None:intergenic
ATTGCCTTTAATTAATTGTT+GGG 0.400289 5_4:+19186393 None:intergenic
TAGGAATGTTGTTGAGAATA+TGG 0.403651 5_4:-19185777 Msa0842200:CDS
GGGCAAAATTCACATCTTAT+GGG 0.413949 5_4:+19185612 None:intergenic
CAAGAGCAATTTCTTTGAAG+TGG 0.416129 5_4:-19186227 Msa0842200:CDS
AGACGAATTTGGGAGAGAAC+TGG 0.419705 5_4:+19186334 None:intergenic
AGGATGGAAAATAGTGTGTT+TGG 0.422056 5_4:-19185378 Msa0842200:three_prime_UTR
TGCAATGAACTTCCCATTAG+AGG 0.423671 5_4:-19187285 Msa0842200:intron
ATGGTCTTGAATTGTAGCTT+AGG 0.425350 5_4:+19187567 None:intergenic
CTTCCAAGTTTCCGTAAAAT+GGG 0.426008 5_4:-19186454 Msa0842200:CDS
ACCACCAGGACTCACACTCT+TGG 0.441655 5_4:+19185685 None:intergenic
TTCAAAGAAATTGCTCTTGG+AGG 0.442661 5_4:+19186231 None:intergenic
GAGAATTGGGTTGGATATGA+AGG 0.449432 5_4:-19185810 Msa0842200:CDS
AGCTCAGCTAGCTTTAGCAT+TGG 0.453685 5_4:+19187693 None:intergenic
TCAGTTGTATATGTCAGCTT+TGG 0.454013 5_4:-19186163 Msa0842200:CDS
GAAAGGGATGATTGTGGGGT+GGG 0.454518 5_4:-19185993 Msa0842200:CDS
AAATAAGGCCAACATATCAT+AGG 0.459700 5_4:+19185875 None:intergenic
GGGCCAATGGTGTAGAGTCT+GGG 0.463341 5_4:+19186304 None:intergenic
AAAGAGAAAGGGATGATTGT+GGG 0.472351 5_4:-19185998 Msa0842200:CDS
GACGAATTTGGGAGAGAACT+GGG 0.472716 5_4:+19186335 None:intergenic
TAATAGTAGGTTTGTGAGTG+AGG 0.474155 5_4:-19185837 Msa0842200:CDS
AGCATCCTGGATTTGGAGAA+AGG 0.475413 5_4:-19187521 Msa0842200:CDS
AGCAATGGATATGGCTAAGT+TGG 0.475852 5_4:-19185711 Msa0842200:CDS
GAATATGGTGAATGATGTTA+TGG 0.476831 5_4:-19185762 Msa0842200:CDS
ACTTTGGAGAGTGTGGTTTG+TGG 0.480967 5_4:-19185902 Msa0842200:CDS
GGATTTACATGGCCTTGTGC+TGG 0.486767 5_4:+19187714 None:intergenic
TGAATGATGTTATGGTGAAT+AGG 0.487988 5_4:-19185754 Msa0842200:CDS
CATTCATGTTCCCTTTAGGA+TGG 0.492513 5_4:-19185394 Msa0842200:three_prime_UTR
TGGTCTTGAATTGTAGCTTA+GGG 0.493157 5_4:+19187568 None:intergenic
GTGGGGTGCCTATGATATGT+TGG 0.496505 5_4:-19185883 Msa0842200:CDS
GAAGGGACTACTAAAGAGAA+AGG 0.498754 5_4:-19186010 Msa0842200:CDS
GCTTTAGCATTGGATTTACA+TGG 0.505828 5_4:+19187703 None:intergenic
TTATAAAATGATAGTGAGGA+TGG 0.511571 5_4:-19185453 Msa0842200:three_prime_UTR
TGAGGTTTGGAGAATTGGGT+TGG 0.516327 5_4:-19185819 Msa0842200:CDS
ATATGAAGGATGTTTGTGAT+AGG 0.519622 5_4:-19185796 Msa0842200:CDS
GCTATCCTTTCTCCAAATCC+AGG 0.521331 5_4:+19187516 None:intergenic
CATAAGAAACGTGCCAGGCA+TGG 0.531082 5_4:-19186500 Msa0842200:CDS
ACATGGCCTTGTGCTGGACA+TGG 0.534043 5_4:+19187720 None:intergenic
GAAATACTTGAGATTTGGCA+TGG 0.537768 5_4:-19186115 Msa0842200:CDS
TAGTGGGTGGAACTCTACTT+TGG 0.543912 5_4:-19185918 Msa0842200:CDS
GAACTCTACTTTGGAGAGTG+TGG 0.546332 5_4:-19185909 Msa0842200:CDS
AGTTTAATTTATAGGAGATG+AGG 0.550058 5_4:-19186536 Msa0842200:intron
TGAAACTAATGAGACGGTTG+TGG 0.551286 5_4:+19187622 None:intergenic
GCATCCAAGAGTGTGAGTCC+TGG 0.552305 5_4:-19185689 Msa0842200:CDS
GTATTGAGGTGGTGGTGAAG+AGG 0.553325 5_4:+19186283 None:intergenic
GGAGTTTGTTAGATCAGCAA+TGG 0.553635 5_4:-19185726 Msa0842200:CDS
GAAAATAGTGTGTTTGGATG+AGG 0.554214 5_4:-19185372 Msa0842200:three_prime_UTR
CAATTGAAGGAGCTTGAGGA+AGG 0.556203 5_4:-19186028 Msa0842200:CDS
CATGGGAAGATTAGCAAATG+TGG 0.557319 5_4:+19187738 None:intergenic
CGCATCATAAGAAACGTGCC+AGG 0.561151 5_4:-19186505 Msa0842200:CDS
CTTGCATCTAAATAATGTTG+TGG 0.563869 5_4:+19187829 None:intergenic
ATCTTGGAAGTTGTTGTAGG+AGG 0.565570 5_4:+19185661 None:intergenic
TATTGAGGTGGTGGTGAAGA+GGG 0.568969 5_4:+19186284 None:intergenic
GTGGTGGTGAAGAGGGCCAA+TGG 0.570422 5_4:+19186291 None:intergenic
TAAAGAGAAAGGGATGATTG+TGG 0.571564 5_4:-19185999 Msa0842200:CDS
AGGACAATTGAAGGAGCTTG+AGG 0.573920 5_4:-19186032 Msa0842200:CDS
CTCACTGTGAAAATCAGAGA+TGG 0.579959 5_4:+19187548 None:intergenic
GGCCAATGGTGTAGAGTCTG+GGG 0.580965 5_4:+19186305 None:intergenic
TCCAAGAGTGTGAGTCCTGG+TGG 0.586272 5_4:-19185686 Msa0842200:CDS
AGAAAGGGATGATTGTGGGG+TGG 0.586735 5_4:-19185994 Msa0842200:CDS
GTGGGTGATTAGGCCAAACA+TGG 0.589150 5_4:-19186065 Msa0842200:CDS
CATGGCCTTGTGCTGGACAT+GGG 0.589394 5_4:+19187721 None:intergenic
ACAATAATATCTTTCAACAA+AGG 0.592002 5_4:+19187459 None:intergenic
TGTGGGGTGGGTTCCACAAG+AGG 0.592500 5_4:-19185981 Msa0842200:CDS
TATCATTGAAACTAATGAGA+CGG 0.592738 5_4:+19187616 None:intergenic
TGATGTTATGGTGAATAGGA+AGG 0.594905 5_4:-19185750 Msa0842200:CDS
AAGGGACTACTAAAGAGAAA+GGG 0.595105 5_4:-19186009 Msa0842200:CDS
TTTGGAGAGTGTGGTTTGTG+GGG 0.597067 5_4:-19185900 Msa0842200:CDS
AAGAGAAAGGGATGATTGTG+GGG 0.603887 5_4:-19185997 Msa0842200:CDS
ATCTTCCCATGTCCAGCACA+AGG 0.604045 5_4:-19187726 Msa0842200:CDS
TGTTATGGTGAATAGGAAGG+AGG 0.604401 5_4:-19185747 Msa0842200:CDS
AATTGAAGGAGCTTGAGGAA+GGG 0.608005 5_4:-19186027 Msa0842200:CDS
ATTTATAGGAGATGAGGACA+TGG 0.611104 5_4:-19186530 Msa0842200:intron
ACGAATTTGGGAGAGAACTG+GGG 0.620956 5_4:+19186336 None:intergenic
TTGTTGTAGGAGGAACCACC+AGG 0.625499 5_4:+19185671 None:intergenic
TGTGACAAAACTTCCTCTTG+TGG 0.629987 5_4:+19185968 None:intergenic
TGAAGTGGACAGAACTTGCA+TGG 0.646698 5_4:-19186212 Msa0842200:CDS
ATACTTATAAAATGATAGTG+AGG 0.651722 5_4:-19185457 Msa0842200:three_prime_UTR
TGGACAGAACTTGCATGGTG+TGG 0.671150 5_4:-19186207 Msa0842200:CDS
TGTGGATGTACTCAGTGTTG+AGG 0.692218 5_4:+19187640 None:intergenic
GCCAATGGTGTAGAGTCTGG+GGG 0.692520 5_4:+19186306 None:intergenic
TAATGATACCATATTAGACA+AGG 0.701143 5_4:-19186428 Msa0842200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGATTTTTTCTGAAAAA+TGG - chr5_4:19185326-19185345 Msa0842200:three_prime_UTR 15.0%
!!! CATTTTTTACTCAATTATTT+TGG + chr5_4:19185948-19185967 None:intergenic 15.0%
!! ATATCTAACTATTTAGTTAA+AGG + chr5_4:19186101-19186120 None:intergenic 15.0%
!! TTACTAAACTAACAAAAATA+CGG - chr5_4:19186135-19186154 Msa0842200:CDS 15.0%
!!! CTTTTTTTTTTTGTAACTTT+TGG - chr5_4:19186350-19186369 Msa0842200:CDS 15.0%
!! TTATATATTGAACTAAATCT+TGG + chr5_4:19187471-19187490 None:intergenic 15.0%
!!! AAGATTTAGTTCAATATATA+AGG - chr5_4:19187470-19187489 Msa0842200:CDS 15.0%
!!! AATACAATCAATTTTTTTGT+TGG + chr5_4:19187627-19187646 None:intergenic 15.0%
!!! TGTAAAGAATTTAAAATTCT+AGG - chr5_4:19187776-19187795 Msa0842200:exon 15.0%
!! AAAAATGAAAGGAATTTAAT+TGG + chr5_4:19187815-19187834 None:intergenic 15.0%
!!! ATTTTTCAATACTTTTGTTT+GGG - chr5_4:19187829-19187848 Msa0842200:five_prime_UTR 15.0%
!! ACAATAATATCTTTCAACAA+AGG + chr5_4:19185657-19185676 None:intergenic 20.0%
!!! GAAAATAAGTTGCATTATTT+TGG - chr5_4:19185683-19185702 Msa0842200:CDS 20.0%
!!! ATTATTTTGGATGGAATATT+TGG - chr5_4:19185696-19185715 Msa0842200:CDS 20.0%
!! TGAATTATTTCATCTTATCA+TGG - chr5_4:19186043-19186062 Msa0842200:CDS 20.0%
!!! GTATTTTTGTTAGTTTAGTA+AGG + chr5_4:19186136-19186155 None:intergenic 20.0%
!! TACTAAACTAACAAAAATAC+GGG - chr5_4:19186136-19186155 Msa0842200:CDS 20.0%
!! TCACATAACTAAATAAGTTA+GGG + chr5_4:19186169-19186188 None:intergenic 20.0%
!!! AGTGTTCTAGTTTAATTTAT+AGG - chr5_4:19186569-19186588 Msa0842200:intron 20.0%
!! ATTGCCTTTAATTAATTGTT+GGG + chr5_4:19186723-19186742 None:intergenic 20.0%
!!! ATTTGTTGATCAGAAAAATA+AGG + chr5_4:19187256-19187275 None:intergenic 20.0%
!!! TTTTTAGTAGGAGAATTAAA+GGG + chr5_4:19187524-19187543 None:intergenic 20.0%
!!! AAATATGAGAAGTTTTTAGT+AGG + chr5_4:19187536-19187555 None:intergenic 20.0%
!! CACAAAAATAAGTATGTATT+TGG - chr5_4:19187576-19187595 Msa0842200:CDS 20.0%
!!! ATACTTATAAAATGATAGTG+AGG - chr5_4:19187656-19187675 Msa0842200:CDS 20.0%
!!! CAAAAGTATTGAAAAATGAA+AGG + chr5_4:19187826-19187845 None:intergenic 20.0%
!!! CATTTTTCAATACTTTTGTT+TGG - chr5_4:19187828-19187847 Msa0842200:five_prime_UTR 20.0%
!!! AAATTCAATGTCATCATTTT+TGG - chr5_4:19187866-19187885 Msa0842200:five_prime_UTR 20.0%
!!! AATTCAATGTCATCATTTTT+GGG - chr5_4:19187867-19187886 Msa0842200:five_prime_UTR 20.0%
! TTTAGATGCAAGAAAGTTAT+AGG - chr5_4:19185295-19185314 Msa0842200:three_prime_UTR 25.0%
! TATCATTGAAACTAATGAGA+CGG + chr5_4:19185500-19185519 None:intergenic 25.0%
!! ATTTTATCACTGAGTTTGTA+TGG - chr5_4:19185627-19185646 Msa0842200:exon 25.0%
!!! ATAAGTTGCATTATTTTGGA+TGG - chr5_4:19185687-19185706 Msa0842200:CDS 25.0%
! TGTTAATTAAGACTCTTAAG+AGG + chr5_4:19185871-19185890 None:intergenic 25.0%
! TAGTTAAAGGAAAAGTAAAG+AGG + chr5_4:19186088-19186107 None:intergenic 25.0%
! ACTAAACTAACAAAAATACG+GGG - chr5_4:19186137-19186156 Msa0842200:CDS 25.0%
! CTCACATAACTAAATAAGTT+AGG + chr5_4:19186170-19186189 None:intergenic 25.0%
! ATGCAACATTTGAATTAACT+TGG - chr5_4:19186270-19186289 Msa0842200:CDS 25.0%
!!! TAACTTGGTATGTTTGTTTT+AGG - chr5_4:19186285-19186304 Msa0842200:CDS 25.0%
! TATGAAACACTTCTAATAGA+AGG - chr5_4:19186451-19186470 Msa0842200:CDS 25.0%
!! AGTTTAATTTATAGGAGATG+AGG - chr5_4:19186577-19186596 Msa0842200:intron 25.0%
!! TATCATTATCACCCATTTTA+CGG + chr5_4:19186673-19186692 None:intergenic 25.0%
! TAATGATACCATATTAGACA+AGG - chr5_4:19186685-19186704 Msa0842200:intron 25.0%
! CTAACCCAACAATTAATTAA+AGG - chr5_4:19186716-19186735 Msa0842200:intron 25.0%
! CATTGCCTTTAATTAATTGT+TGG + chr5_4:19186724-19186743 None:intergenic 25.0%
!!! ATGTTTTTTTTGTGGTATTG+AGG + chr5_4:19186847-19186866 None:intergenic 25.0%
!!! TGATGATGATGTTTTTTTTG+TGG + chr5_4:19186855-19186874 None:intergenic 25.0%
!!! ACATATACAACTGATTTTGA+TGG + chr5_4:19186944-19186963 None:intergenic 25.0%
!! ATAGCAAAAAACGATTTTTG+TGG - chr5_4:19187029-19187048 Msa0842200:intron 25.0%
!! TAGCAAAAAACGATTTTTGT+GGG - chr5_4:19187030-19187049 Msa0842200:intron 25.0%
! CTGATCAACAAATTAATAGT+AGG - chr5_4:19187263-19187282 Msa0842200:intron 25.0%
!!! GTTTTTAGTAGGAGAATTAA+AGG + chr5_4:19187525-19187544 None:intergenic 25.0%
!! TTATAAAATGATAGTGAGGA+TGG - chr5_4:19187660-19187679 Msa0842200:CDS 25.0%
! GTAGTCTCGTAAAATTATTT+AGG - chr5_4:19187688-19187707 Msa0842200:CDS 25.0%
!!! ATTCAATGTCATCATTTTTG+GGG - chr5_4:19187868-19187887 Msa0842200:five_prime_UTR 25.0%
TGTGGAGTTATATGTGTATA+AGG + chr5_4:19185269-19185288 None:intergenic 30.0%
CTTGCATCTAAATAATGTTG+TGG + chr5_4:19185287-19185306 None:intergenic 30.0%
! TTTATCTGTTCCAAAGCTTT+TGG - chr5_4:19185803-19185822 Msa0842200:CDS 30.0%
CAGAGTTATATACCTCTAAT+GGG + chr5_4:19185843-19185862 None:intergenic 30.0%
TCAGAGTTATATACCTCTAA+TGG + chr5_4:19185844-19185863 None:intergenic 30.0%
ATGAAAAACTTCTAACAGTC+AGG - chr5_4:19186385-19186404 Msa0842200:CDS 30.0%
! AGATGAATTTTGCTACACAT+TGG - chr5_4:19186417-19186436 Msa0842200:CDS 30.0%
TATGATCCATATAGAGTTGA+TGG - chr5_4:19186497-19186516 Msa0842200:CDS 30.0%
AAGTACAACCTTGTCTAATA+TGG + chr5_4:19186696-19186715 None:intergenic 30.0%
!!! TTTTTTTTGTGGTATTGAGG+TGG + chr5_4:19186844-19186863 None:intergenic 30.0%
GAGAAGAAATACTTGAGATT+TGG - chr5_4:19186993-19187012 Msa0842200:intron 30.0%
ACAAGAAAAAGGACAATTGA+AGG - chr5_4:19187072-19187091 Msa0842200:intron 30.0%
AAATAAGGCCAACATATCAT+AGG + chr5_4:19187241-19187260 None:intergenic 30.0%
ATATGAAGGATGTTTGTGAT+AGG - chr5_4:19187317-19187336 Msa0842200:CDS 30.0%
TAGGAATGTTGTTGAGAATA+TGG - chr5_4:19187336-19187355 Msa0842200:CDS 30.0%
GAATATGGTGAATGATGTTA+TGG - chr5_4:19187351-19187370 Msa0842200:CDS 30.0%
TGAATGATGTTATGGTGAAT+AGG - chr5_4:19187359-19187378 Msa0842200:CDS 30.0%
TAAATCTTGGAAGTTGTTGT+AGG + chr5_4:19187458-19187477 None:intergenic 30.0%
TTTGGACGTGAAAAATTTGA+TGG - chr5_4:19187594-19187613 Msa0842200:CDS 30.0%
ATAACATTCATGTTCCCTTT+AGG - chr5_4:19187715-19187734 Msa0842200:CDS 30.0%
! ACACTATTTTCCATCCTAAA+GGG + chr5_4:19187732-19187751 None:intergenic 30.0%
!! TTTCAATACTTTTGTTTGGG+TGG - chr5_4:19187832-19187851 Msa0842200:five_prime_UTR 30.0%
AAAAATGGAAACACAGCCTA+AGG - chr5_4:19185341-19185360 Msa0842200:three_prime_UTR 35.0%
! TGTGGAGAAGATTTTTCCTT+AGG + chr5_4:19185360-19185379 None:intergenic 35.0%
! GCTTTAGCATTGGATTTACA+TGG + chr5_4:19185413-19185432 None:intergenic 35.0%
! TGGTCTTGAATTGTAGCTTA+GGG + chr5_4:19185548-19185567 None:intergenic 35.0%
! ATGGTCTTGAATTGTAGCTT+AGG + chr5_4:19185549-19185568 None:intergenic 35.0%
!!! TGTTAGTGCTTGTTGCTTTT+GGG - chr5_4:19185776-19185795 Msa0842200:CDS 35.0%
GGAAAAGTAAAGAGGTAAAG+AGG + chr5_4:19186080-19186099 None:intergenic 35.0%
TGACTATTGTCATCTAGTCT+AGG - chr5_4:19186197-19186216 Msa0842200:CDS 35.0%
TTCTCACCATCAACTCTATA+TGG + chr5_4:19186506-19186525 None:intergenic 35.0%
ATTTATAGGAGATGAGGACA+TGG - chr5_4:19186583-19186602 Msa0842200:intron 35.0%
TCTTCCAAGTTTCCGTAAAA+TGG - chr5_4:19186658-19186677 Msa0842200:intron 35.0%
CTTCCAAGTTTCCGTAAAAT+GGG - chr5_4:19186659-19186678 Msa0842200:intron 35.0%
TTCAAAGAAATTGCTCTTGG+AGG + chr5_4:19186885-19186904 None:intergenic 35.0%
CACTTCAAAGAAATTGCTCT+TGG + chr5_4:19186888-19186907 None:intergenic 35.0%
! CAAGAGCAATTTCTTTGAAG+TGG - chr5_4:19186886-19186905 Msa0842200:intron 35.0%
TCAGTTGTATATGTCAGCTT+TGG - chr5_4:19186950-19186969 Msa0842200:intron 35.0%
GAAATACTTGAGATTTGGCA+TGG - chr5_4:19186998-19187017 Msa0842200:intron 35.0%
! AACGATTTTTGTGGGTGATT+AGG - chr5_4:19187038-19187057 Msa0842200:intron 35.0%
! CCTTTTTCTTGTACCATGTT+TGG + chr5_4:19187064-19187083 None:intergenic 35.0%
CCAAACATGGTACAAGAAAA+AGG - chr5_4:19187061-19187080 Msa0842200:intron 35.0%
AAGGGACTACTAAAGAGAAA+GGG - chr5_4:19187104-19187123 Msa0842200:intron 35.0%
TAAAGAGAAAGGGATGATTG+TGG - chr5_4:19187114-19187133 Msa0842200:intron 35.0%
AAAGAGAAAGGGATGATTGT+GGG - chr5_4:19187115-19187134 Msa0842200:intron 35.0%
!!! GTGCTTTTTTGACACATAGT+GGG - chr5_4:19187179-19187198 Msa0842200:intron 35.0%
TAATAGTAGGTTTGTGAGTG+AGG - chr5_4:19187276-19187295 Msa0842200:intron 35.0%
TGATGTTATGGTGAATAGGA+AGG - chr5_4:19187363-19187382 Msa0842200:CDS 35.0%
TGTTAGATCAGCAATGGATA+TGG - chr5_4:19187393-19187412 Msa0842200:CDS 35.0%
GGGCAAAATTCACATCTTAT+GGG + chr5_4:19187504-19187523 None:intergenic 35.0%
AGGGCAAAATTCACATCTTA+TGG + chr5_4:19187505-19187524 None:intergenic 35.0%
! CACACTATTTTCCATCCTAA+AGG + chr5_4:19187733-19187752 None:intergenic 35.0%
AGGATGGAAAATAGTGTGTT+TGG - chr5_4:19187735-19187754 Msa0842200:CDS 35.0%
GAAAATAGTGTGTTTGGATG+AGG - chr5_4:19187741-19187760 Msa0842200:CDS 35.0%
CATGGGAAGATTAGCAAATG+TGG + chr5_4:19185378-19185397 None:intergenic 40.0%
TGAAACTAATGAGACGGTTG+TGG + chr5_4:19185494-19185513 None:intergenic 40.0%
CTCACTGTGAAAATCAGAGA+TGG + chr5_4:19185568-19185587 None:intergenic 40.0%
! CATCTCTGATTTTCACAGTG+AGG - chr5_4:19185566-19185585 Msa0842200:three_prime_UTR 40.0%
! TGGTGATCTTGCTACTGATT+TGG - chr5_4:19185716-19185735 Msa0842200:CDS 40.0%
!!! CTGTTAGTGCTTGTTGCTTT+TGG - chr5_4:19185775-19185794 Msa0842200:CDS 40.0%
TCATTGCACTCCAAAAGCTT+TGG + chr5_4:19185816-19185835 None:intergenic 40.0%
TGCAATGAACTTCCCATTAG+AGG - chr5_4:19185828-19185847 Msa0842200:CDS 40.0%
TCCACTCAAAACACCATCTT+AGG - chr5_4:19185969-19185988 Msa0842200:CDS 40.0%
CCACTCAAAACACCATCTTA+GGG - chr5_4:19185970-19185989 Msa0842200:CDS 40.0%
CACTCAAAACACCATCTTAG+GGG - chr5_4:19185971-19185990 Msa0842200:CDS 40.0%
! TCACCCATTTTACGGAAACT+TGG + chr5_4:19186665-19186684 None:intergenic 40.0%
!! TTTTTGTGGTATTGAGGTGG+TGG + chr5_4:19186841-19186860 None:intergenic 40.0%
AATTGAAGGAGCTTGAGGAA+GGG - chr5_4:19187086-19187105 Msa0842200:intron 40.0%
GAAGGGACTACTAAAGAGAA+AGG - chr5_4:19187103-19187122 Msa0842200:intron 40.0%
AAGAGAAAGGGATGATTGTG+GGG - chr5_4:19187116-19187135 Msa0842200:intron 40.0%
TGTGACAAAACTTCCTCTTG+TGG + chr5_4:19187148-19187167 None:intergenic 40.0%
! GTTTTGTCACACACAGCAAT+TGG - chr5_4:19187157-19187176 Msa0842200:intron 40.0%
!!! GGTGCTTTTTTGACACATAG+TGG - chr5_4:19187178-19187197 Msa0842200:intron 40.0%
!!! CTTTTTTGACACATAGTGGG+TGG - chr5_4:19187182-19187201 Msa0842200:intron 40.0%
TGAGTGAGGTTTGGAGAATT+GGG - chr5_4:19187290-19187309 Msa0842200:CDS 40.0%
!! GAGAATTGGGTTGGATATGA+AGG - chr5_4:19187303-19187322 Msa0842200:CDS 40.0%
TGTTATGGTGAATAGGAAGG+AGG - chr5_4:19187366-19187385 Msa0842200:CDS 40.0%
!! GGAGTTTGTTAGATCAGCAA+TGG - chr5_4:19187387-19187406 Msa0842200:CDS 40.0%
AGCAATGGATATGGCTAAGT+TGG - chr5_4:19187402-19187421 Msa0842200:CDS 40.0%
ATCTTGGAAGTTGTTGTAGG+AGG + chr5_4:19187455-19187474 None:intergenic 40.0%
! CATTCATGTTCCCTTTAGGA+TGG - chr5_4:19187719-19187738 Msa0842200:CDS 40.0%
GTGTGTTTGGATGAGGTAAT+AGG - chr5_4:19187748-19187767 Msa0842200:CDS 40.0%
!! AGCTCAGCTAGCTTTAGCAT+TGG + chr5_4:19185423-19185442 None:intergenic 45.0%
TGTGGATGTACTCAGTGTTG+AGG + chr5_4:19185476-19185495 None:intergenic 45.0%
AGCATCCTGGATTTGGAGAA+AGG - chr5_4:19185592-19185611 Msa0842200:three_prime_UTR 45.0%
GCTATCCTTTCTCCAAATCC+AGG + chr5_4:19185600-19185619 None:intergenic 45.0%
!! ACTGATTTGGCTGCTGAGTT+TGG - chr5_4:19185729-19185748 Msa0842200:CDS 45.0%
!! CTGATTTGGCTGCTGAGTTT+GGG - chr5_4:19185730-19185749 Msa0842200:CDS 45.0%
!! CCCTAAGATGGTGTTTTGAG+TGG + chr5_4:19185973-19185992 None:intergenic 45.0%
ACGAATTTGGGAGAGAACTG+GGG + chr5_4:19186780-19186799 None:intergenic 45.0%
GACGAATTTGGGAGAGAACT+GGG + chr5_4:19186781-19186800 None:intergenic 45.0%
AGACGAATTTGGGAGAGAAC+TGG + chr5_4:19186782-19186801 None:intergenic 45.0%
! TATTGAGGTGGTGGTGAAGA+GGG + chr5_4:19186832-19186851 None:intergenic 45.0%
TGAAGTGGACAGAACTTGCA+TGG - chr5_4:19186901-19186920 Msa0842200:intron 45.0%
AGGACAATTGAAGGAGCTTG+AGG - chr5_4:19187081-19187100 Msa0842200:intron 45.0%
CAATTGAAGGAGCTTGAGGA+AGG - chr5_4:19187085-19187104 Msa0842200:intron 45.0%
! TAGTGGGTGGAACTCTACTT+TGG - chr5_4:19187195-19187214 Msa0842200:intron 45.0%
! GAACTCTACTTTGGAGAGTG+TGG - chr5_4:19187204-19187223 Msa0842200:intron 45.0%
! ACTTTGGAGAGTGTGGTTTG+TGG - chr5_4:19187211-19187230 Msa0842200:intron 45.0%
! CTTTGGAGAGTGTGGTTTGT+GGG - chr5_4:19187212-19187231 Msa0842200:intron 45.0%
! TTTGGAGAGTGTGGTTTGTG+GGG - chr5_4:19187213-19187232 Msa0842200:intron 45.0%
GTAGGTTTGTGAGTGAGGTT+TGG - chr5_4:19187281-19187300 Msa0842200:intron 45.0%
GTGAGTGAGGTTTGGAGAAT+TGG - chr5_4:19187289-19187308 Msa0842200:CDS 45.0%
TGAGGTTTGGAGAATTGGGT+TGG - chr5_4:19187294-19187313 Msa0842200:CDS 45.0%
ATCTTCCCATGTCCAGCACA+AGG - chr5_4:19185387-19185406 Msa0842200:three_prime_UTR 50.0%
!! GGATTTACATGGCCTTGTGC+TGG + chr5_4:19185402-19185421 None:intergenic 50.0%
!! GAGGAGAAGCATCCTGGATT+TGG - chr5_4:19185585-19185604 Msa0842200:three_prime_UTR 50.0%
CACCATCTTAGGGGTCTAGT+AGG - chr5_4:19185980-19185999 Msa0842200:CDS 50.0%
CACCTACTAGACCCCTAAGA+TGG + chr5_4:19185985-19186004 None:intergenic 50.0%
CGCATCATAAGAAACGTGCC+AGG - chr5_4:19186608-19186627 Msa0842200:intron 50.0%
CATAAGAAACGTGCCAGGCA+TGG - chr5_4:19186613-19186632 Msa0842200:intron 50.0%
! CGAAGCAAGTTTTCCATGCC+TGG + chr5_4:19186629-19186648 None:intergenic 50.0%
! GGGGGCATGAAGACGAATTT+GGG + chr5_4:19186792-19186811 None:intergenic 50.0%
! TGGGGGCATGAAGACGAATT+TGG + chr5_4:19186793-19186812 None:intergenic 50.0%
! GTATTGAGGTGGTGGTGAAG+AGG + chr5_4:19186833-19186852 None:intergenic 50.0%
TGGACAGAACTTGCATGGTG+TGG - chr5_4:19186906-19186925 Msa0842200:intron 50.0%
GTGGGTGATTAGGCCAAACA+TGG - chr5_4:19187048-19187067 Msa0842200:intron 50.0%
AGAAAGGGATGATTGTGGGG+TGG - chr5_4:19187119-19187138 Msa0842200:intron 50.0%
GAAAGGGATGATTGTGGGGT+GGG - chr5_4:19187120-19187139 Msa0842200:intron 50.0%
! GTGGGGTGCCTATGATATGT+TGG - chr5_4:19187230-19187249 Msa0842200:intron 50.0%
TTGTTGTAGGAGGAACCACC+AGG + chr5_4:19187445-19187464 None:intergenic 50.0%
!! CATGGCCTTGTGCTGGACAT+GGG + chr5_4:19185395-19185414 None:intergenic 55.0%
!! ACATGGCCTTGTGCTGGACA+TGG + chr5_4:19185396-19185415 None:intergenic 55.0%
!! CACAGTGAGGAGAAGCATCC+TGG - chr5_4:19185579-19185598 Msa0842200:three_prime_UTR 55.0%
GCCAATGGTGTAGAGTCTGG+GGG + chr5_4:19186810-19186829 None:intergenic 55.0%
GGCCAATGGTGTAGAGTCTG+GGG + chr5_4:19186811-19186830 None:intergenic 55.0%
GGGCCAATGGTGTAGAGTCT+GGG + chr5_4:19186812-19186831 None:intergenic 55.0%
AGGGCCAATGGTGTAGAGTC+TGG + chr5_4:19186813-19186832 None:intergenic 55.0%
! GCATCCAAGAGTGTGAGTCC+TGG - chr5_4:19187424-19187443 Msa0842200:CDS 55.0%
! TCCAAGAGTGTGAGTCCTGG+TGG - chr5_4:19187427-19187446 Msa0842200:CDS 55.0%
ACCACCAGGACTCACACTCT+TGG + chr5_4:19187431-19187450 None:intergenic 55.0%
GCCCCCAGACTCTACACCAT+TGG - chr5_4:19186806-19186825 Msa0842200:intron 60.0%
! GTGGTGGTGAAGAGGGCCAA+TGG + chr5_4:19186825-19186844 None:intergenic 60.0%
! TGTGGGGTGGGTTCCACAAG+AGG - chr5_4:19187132-19187151 Msa0842200:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19185241 19187894 19185241 ID=Msa0842200;Name=Msa0842200
chr5_4 mRNA 19185241 19187894 19185241 ID=Msa0842200-mRNA-1;Parent=Msa0842200;Name=Msa0842200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=104|1|1|1|1|1|2|387|473
chr5_4 exon 19185241 19186544 19185241 ID=Msa0842200-mRNA-1:exon:7968;Parent=Msa0842200-mRNA-1
chr5_4 exon 19187286 19187894 19187286 ID=Msa0842200-mRNA-1:exon:7967;Parent=Msa0842200-mRNA-1
chr5_4 five_prime_UTR 19187791 19187894 19187791 ID=Msa0842200-mRNA-1:five_prime_utr;Parent=Msa0842200-mRNA-1
chr5_4 CDS 19187286 19187790 19187286 ID=Msa0842200-mRNA-1:cds;Parent=Msa0842200-mRNA-1
chr5_4 CDS 19185628 19186544 19185628 ID=Msa0842200-mRNA-1:cds;Parent=Msa0842200-mRNA-1
chr5_4 three_prime_UTR 19185241 19185627 19185241 ID=Msa0842200-mRNA-1:three_prime_utr;Parent=Msa0842200-mRNA-1
Gene Sequence

>Msa0842200

ATGGAAACACAGCCTAAGGAAAAATCTTCTCCACATTTGCTAATCTTCCCATGTCCAGCACAAGGCCATGTAAATCCAATGCTAAAGCTAGCTGAGCTTCTTGCAATTCAAAATCTCAACATAACTTTCCTCAACACTGAGTACATCCACAACCGTCTCATTAGTTTCAATGATAATATTCAATCTCTTTCAGAATGTTACCCTAAGCTACAATTCAAGACCATCTCTGATTTTCACAGTGAGGAGAAGCATCCTGGATTTGGAGAAAGGATAGCAGATGTAATTTTATCACTGAGTTTGTATGGTAAGCCTTTGTTGAAAGATATTATTGTGTCTGAGAAAATAAGTTGCATTATTTTGGATGGAATATTTGGTGATCTTGCTACTGATTTGGCTGCTGAGTTTGGGATACAATTGATTCATTTTCGTACTGTTAGTGCTTGTTGCTTTTGGGCTTATTTATCTGTTCCAAAGCTTTTGGAGTGCAATGAACTTCCCATTAGAGGAGATGAGGACATGGATCGCATCATAAGAAACGTGCCAGGCATGGAAAACTTGCTTCGATGTAGAGATCTTCCAAGTTTCCGTAAAATGGGTGATAATGATACCATATTAGACAAGGTTGTACTTCTAACCCAACAATTAATTAAAGGCAATGCATTAATACTCAACACGTTCGAGAATCTAGAATCCCCAGTTCTCTCCCAAATTCGTCTTCATGCCCCCAGACTCTACACCATTGGCCCTCTTCACCACCACCTCAATACCACAAAAAAAACATCATCATCATCATCATCCTCCAAGAGCAATTTCTTTGAAGTGGACAGAACTTGCATGGTGTGGCTCGATTCTCAACCATCAAAATCAGTTGTATATGTCAGCTTTGGCAGCATCACGACAATGACAAGAGAAGAAATACTTGAGATTTGGCATGGTTTATTGAATAGCAAAAAACGATTTTTGTGGGTGATTAGGCCAAACATGGTACAAGAAAAAGGACAATTGAAGGAGCTTGAGGAAGGGACTACTAAAGAGAAAGGGATGATTGTGGGGTGGGTTCCACAAGAGGAAGTTTTGTCACACACAGCAATTGGTGCTTTTTTGACACATAGTGGGTGGAACTCTACTTTGGAGAGTGTGGTTTGTGGGGTGCCTATGATATGTTGGCCTTATTTTTCTGATCAACAAATTAATAGTAGGTTTGTGAGTGAGGTTTGGAGAATTGGGTTGGATATGAAGGATGTTTGTGATAGGAATGTTGTTGAGAATATGGTGAATGATGTTATGGTGAATAGGAAGGAGGAGTTTGTTAGATCAGCAATGGATATGGCTAAGTTGGCATCCAAGAGTGTGAGTCCTGGTGGTTCCTCCTACAACAACTTCCAAGATTTAGTTCAATATATAAGGTCTACTAGCCCATAA
Protein sequence

>Msa0842200

METQPKEKSSPHLLIFPCPAQGHVNPMLKLAELLAIQNLNITFLNTEYIHNRLISFNDNIQSLSECYPKLQFKTISDFHSEEKHPGFGERIADVILSLSLYGKPLLKDIIVSEKISCIILDGIFGDLATDLAAEFGIQLIHFRTVSACCFWAYLSVPKLLECNELPIRGDEDMDRIIRNVPGMENLLRCRDLPSFRKMGDNDTILDKVVLLTQQLIKGNALILNTFENLESPVLSQIRLHAPRLYTIGPLHHHLNTTKKTSSSSSSSKSNFFEVDRTCMVWLDSQPSKSVVYVSFGSITTMTREEILEIWHGLLNSKKRFLWVIRPNMVQEKGQLKELEEGTTKEKGMIVGWVPQEEVLSHTAIGAFLTHSGWNSTLESVVCGVPMICWPYFSDQQINSRFVSEVWRIGLDMKDVCDRNVVENMVNDVMVNRKEEFVRSAMDMAKLASKSVSPGGSSYNNFQDLVQYIRSTSP*