Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804130 | XP_003613028.1 | 77.880 | 217 | 22 | 1 | 1 | 191 | 1 | 217 | 3.26e-111 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804130 | sp|U3U992|UGT8_CATRO | 39.269 | 219 | 95 | 6 | 10 | 193 | 9 | 224 | 1.44e-29 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804130 | G7JWC5 | 77.880 | 217 | 22 | 1 | 1 | 191 | 1 | 217 | 1.56e-111 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004610 | Msa0804130 | 0.818820 | 1.605278e-52 | -8.615850e-47 |
| Msa0020630 | Msa0804130 | 0.815519 | 8.869014e-52 | -8.615850e-47 |
| Msa0038350 | Msa0804130 | -0.809169 | 2.161170e-50 | -8.615850e-47 |
| Msa0094100 | Msa0804130 | 0.813430 | 2.569723e-51 | -8.615850e-47 |
| Msa0619330 | Msa0804130 | 0.807096 | 5.972075e-50 | -8.615850e-47 |
| Msa0647000 | Msa0804130 | 0.823805 | 1.136641e-53 | -8.615850e-47 |
| Msa0724290 | Msa0804130 | 0.809635 | 1.716462e-50 | -8.615850e-47 |
| Msa0726610 | Msa0804130 | 0.822442 | 2.363663e-53 | -8.615850e-47 |
| Msa0730180 | Msa0804130 | 0.808544 | 2.939578e-50 | -8.615850e-47 |
| Msa0756480 | Msa0804130 | 0.817199 | 3.732443e-52 | -8.615850e-47 |
| Msa0770430 | Msa0804130 | 0.823301 | 1.491078e-53 | -8.615850e-47 |
| Msa0792510 | Msa0804130 | 0.812889 | 3.378597e-51 | -8.615850e-47 |
| Msa0802210 | Msa0804130 | 0.807739 | 4.363207e-50 | -8.615850e-47 |
| Msa0804130 | Msa0804140 | 0.817972 | 2.499206e-52 | -8.615850e-47 |
| Msa0804130 | Msa0835510 | 0.807589 | 4.695660e-50 | -8.615850e-47 |
| Msa0804130 | Msa0837990 | 0.805380 | 1.372922e-49 | -8.615850e-47 |
| Msa0804130 | Msa0842200 | 0.888829 | 4.172569e-73 | -8.615850e-47 |
| Msa0804130 | Msa0848360 | 0.809515 | 1.821373e-50 | -8.615850e-47 |
| Msa0804130 | Msa0855020 | 0.806491 | 8.014868e-50 | -8.615850e-47 |
| Msa0804130 | Msa0890250 | 0.804823 | 1.795034e-49 | -8.615850e-47 |
| Msa0804130 | Msa0925160 | 0.804837 | 1.783682e-49 | -8.615850e-47 |
| Msa0804130 | Msa0970050 | 0.803810 | 2.918016e-49 | -8.615850e-47 |
| Msa0804130 | Msa0977320 | 0.801160 | 1.026488e-48 | -8.615850e-47 |
| Msa0804130 | Msa1000470 | 0.805241 | 1.468311e-49 | -8.615850e-47 |
| Msa0804130 | Msa1036390 | 0.835391 | 1.724685e-56 | -8.615850e-47 |
| Msa0804130 | Msa1076680 | 0.826083 | 3.295265e-54 | -8.615850e-47 |
| Msa0804130 | Msa1081600 | 0.802257 | 6.114098e-49 | -8.615850e-47 |
| Msa0804130 | Msa1093390 | 0.802886 | 4.535135e-49 | -8.615850e-47 |
| Msa0804130 | Msa1105290 | 0.816097 | 6.592992e-52 | -8.615850e-47 |
| Msa0804130 | Msa1166370 | 0.802115 | 6.538320e-49 | -8.615850e-47 |
| Msa0804130 | Msa1264560 | 0.807940 | 3.954273e-50 | -8.615850e-47 |
| Msa0804130 | Msa1280120 | 0.803953 | 2.725376e-49 | -8.615850e-47 |
| Msa0804130 | Msa1296960 | -0.801606 | 8.318228e-49 | -8.615850e-47 |
| Msa0804130 | Msa1342430 | 0.803338 | 3.656520e-49 | -8.615850e-47 |
| Msa0804130 | Msa1373950 | 0.809459 | 1.872923e-50 | -8.615850e-47 |
| Msa0804130 | Msa1385620 | 0.810491 | 1.122440e-50 | -8.615850e-47 |
| Msa0132180 | Msa0804130 | 0.803647 | 3.155538e-49 | -8.615850e-47 |
| Msa0159750 | Msa0804130 | 0.811145 | 8.105336e-51 | -8.615850e-47 |
| Msa0162050 | Msa0804130 | 0.800909 | 1.155121e-48 | -8.615850e-47 |
| Msa0185640 | Msa0804130 | -0.804852 | 1.770370e-49 | -8.615850e-47 |
| Msa0200950 | Msa0804130 | -0.806566 | 7.731681e-50 | -8.615850e-47 |
| Msa0217470 | Msa0804130 | 0.801285 | 9.677794e-49 | -8.615850e-47 |
| Msa0437710 | Msa0804130 | 0.824092 | 9.734705e-54 | -8.615850e-47 |
| Msa0258670 | Msa0804130 | -0.811412 | 7.091701e-51 | -8.615850e-47 |
| Msa0265820 | Msa0804130 | 0.815694 | 8.108302e-52 | -8.615850e-47 |
| Msa0334980 | Msa0804130 | 0.807407 | 5.131302e-50 | -8.615850e-47 |
| Msa0509970 | Msa0804130 | 0.831497 | 1.614071e-55 | -8.615850e-47 |
| Msa0511890 | Msa0804130 | 0.808911 | 2.454353e-50 | -8.615850e-47 |
| Msa0574170 | Msa0804130 | 0.803323 | 3.682556e-49 | -8.615850e-47 |
| Msa0583930 | Msa0804130 | 0.801062 | 1.075171e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804130 | MtrunA17_Chr5g0412131 | 77.880 | 217 | 22 | 1 | 1 | 191 | 1 | 217 | 3.00e-115 | 339 |
| Msa0804130 | MtrunA17_Chr5g0412101 | 74.771 | 218 | 28 | 2 | 1 | 191 | 1 | 218 | 1.03e-106 | 318 |
| Msa0804130 | MtrunA17_Chr5g0412111 | 64.783 | 230 | 50 | 4 | 10 | 208 | 3 | 232 | 1.65e-91 | 278 |
| Msa0804130 | MtrunA17_Chr3g0118671 | 30.453 | 243 | 114 | 10 | 12 | 208 | 6 | 239 | 1.08e-17 | 82.4 |
| Msa0804130 | MtrunA17_Chr3g0118701 | 31.169 | 231 | 106 | 10 | 11 | 196 | 14 | 236 | 2.14e-16 | 79.0 |
| Msa0804130 | MtrunA17_Chr3g0118691 | 29.680 | 219 | 112 | 7 | 11 | 191 | 14 | 228 | 2.20e-16 | 78.6 |
| Msa0804130 | MtrunA17_Chr5g0426411 | 33.775 | 151 | 86 | 5 | 1 | 142 | 1 | 146 | 2.27e-15 | 72.4 |
| Msa0804130 | MtrunA17_Chr3g0118751 | 30.622 | 209 | 101 | 10 | 11 | 180 | 5 | 208 | 2.43e-15 | 75.5 |
| Msa0804130 | MtrunA17_Chr3g0118711 | 29.536 | 237 | 116 | 9 | 1 | 194 | 1 | 229 | 2.99e-15 | 75.5 |
| Msa0804130 | MtrunA17_Chr3g0118771 | 29.091 | 220 | 90 | 9 | 11 | 180 | 20 | 223 | 1.85e-14 | 73.2 |
| Msa0804130 | MtrunA17_Chr2g0278711 | 30.144 | 209 | 105 | 7 | 11 | 183 | 10 | 213 | 1.17e-13 | 70.5 |
| Msa0804130 | MtrunA17_Chr3g0118661 | 29.365 | 252 | 107 | 13 | 11 | 208 | 12 | 246 | 1.18e-13 | 70.5 |
| Msa0804130 | MtrunA17_Chr4g0050341 | 28.571 | 217 | 105 | 11 | 7 | 180 | 14 | 223 | 2.42e-13 | 69.7 |
| Msa0804130 | MtrunA17_Chr6g0454191 | 28.049 | 246 | 124 | 12 | 11 | 208 | 9 | 249 | 3.77e-13 | 69.3 |
| Msa0804130 | MtrunA17_Chr6g0454251 | 25.792 | 221 | 107 | 8 | 11 | 183 | 6 | 217 | 2.77e-12 | 66.2 |
| Msa0804130 | MtrunA17_Chr3g0092641 | 28.241 | 216 | 104 | 10 | 8 | 180 | 8 | 215 | 1.14e-11 | 64.7 |
| Msa0804130 | MtrunA17_Chr6g0454181 | 25.911 | 247 | 133 | 11 | 8 | 208 | 6 | 248 | 1.43e-11 | 64.3 |
| Msa0804130 | MtrunA17_Chr5g0426431 | 28.829 | 222 | 95 | 10 | 8 | 180 | 8 | 215 | 2.27e-11 | 63.9 |
| Msa0804130 | MtrunA17_Chr5g0423981 | 27.193 | 228 | 119 | 10 | 8 | 208 | 6 | 213 | 2.62e-11 | 63.5 |
| Msa0804130 | MtrunA17_Chr6g0453951 | 25.926 | 216 | 115 | 6 | 7 | 180 | 52 | 264 | 4.16e-11 | 63.2 |
| Msa0804130 | MtrunA17_Chr3g0118741 | 54.348 | 46 | 21 | 0 | 10 | 55 | 4 | 49 | 4.47e-11 | 57.8 |
| Msa0804130 | MtrunA17_Chr6g0454301 | 43.284 | 67 | 36 | 1 | 11 | 77 | 262 | 326 | 7.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804130 | AT1G22380.1 | 30.374 | 214 | 101 | 8 | 11 | 183 | 12 | 218 | 2.44e-18 | 84.7 |
| Msa0804130 | AT1G22340.1 | 29.524 | 210 | 99 | 10 | 11 | 179 | 12 | 213 | 4.18e-16 | 78.2 |
| Msa0804130 | AT1G22370.2 | 29.665 | 209 | 95 | 9 | 11 | 179 | 12 | 208 | 6.64e-16 | 77.8 |
| Msa0804130 | AT1G22360.1 | 27.700 | 213 | 97 | 7 | 12 | 179 | 10 | 210 | 1.01e-13 | 71.2 |
| Msa0804130 | AT1G22360.2 | 27.700 | 213 | 97 | 7 | 12 | 179 | 10 | 210 | 1.04e-13 | 71.2 |
| Msa0804130 | AT3G02100.1 | 33.784 | 148 | 81 | 5 | 6 | 142 | 7 | 148 | 6.93e-13 | 68.6 |
| Msa0804130 | AT1G22400.1 | 24.651 | 215 | 104 | 8 | 11 | 179 | 12 | 214 | 9.39e-13 | 68.6 |
Find 49 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAAGTTGCATTATTT+TGG | 0.129986 | 5_3:+19701923 | Msa0804130:CDS |
| TCTTCCAAGTTTCCGTAAAA+TGG | 0.190982 | 5_3:+19702699 | Msa0804130:CDS |
| ACTGATTTGGCTGCTGAGTT+TGG | 0.266869 | 5_3:+19701969 | Msa0804130:CDS |
| GAGGAGAAGCATCCTGGATT+TGG | 0.312050 | 5_3:+19701825 | Msa0804130:CDS |
| CTGATTTGGCTGCTGAGTTT+GGG | 0.334780 | 5_3:+19701970 | Msa0804130:CDS |
| TTCTAACCCAACAATTAATA+AGG | 0.343848 | 5_3:+19702755 | Msa0804130:CDS |
| AAGTACAACCTTGTCTAATA+TGG | 0.344130 | 5_3:-19702734 | None:intergenic |
| TGGTGATCTTGCTACTGATT+TGG | 0.352180 | 5_3:+19701956 | Msa0804130:CDS |
| CACAGTGAGGAGAAGCATCC+TGG | 0.364154 | 5_3:+19701819 | Msa0804130:CDS |
| AGGGCCAATGGTGTAGAGTC+TGG | 0.370603 | 5_3:-19702849 | None:intergenic |
| TGCGTTGCCTTATTAATTGT+TGG | 0.374072 | 5_3:-19702762 | None:intergenic |
| CACTTCGAAGAAATTGCTCT+TGG | 0.405842 | 5_3:-19702921 | None:intergenic |
| GCGTTGCCTTATTAATTGTT+GGG | 0.407863 | 5_3:-19702761 | None:intergenic |
| AGACGAATTTGGGAGAGAAC+TGG | 0.419705 | 5_3:-19702818 | None:intergenic |
| ATGGTCTTGAATTGTAGCTT+AGG | 0.425350 | 5_3:-19701786 | None:intergenic |
| CTTCCAAGTTTCCGTAAAAT+GGG | 0.426008 | 5_3:+19702700 | Msa0804130:CDS |
| TTCGAAGAAATTGCTCTTGG+AGG | 0.443260 | 5_3:-19702918 | None:intergenic |
| AGCTCAGCTAGCTTTAGCAT+TGG | 0.453685 | 5_3:-19701660 | None:intergenic |
| TCAGTTGTATATGTCAGCTT+TGG | 0.454013 | 5_3:+19702986 | Msa0804130:CDS |
| GGGCCAATGGTGTAGAGTCT+GGG | 0.463341 | 5_3:-19702848 | None:intergenic |
| GACGAATTTGGGAGAGAACT+GGG | 0.472716 | 5_3:-19702817 | None:intergenic |
| AGCATCCTGGATTTGGAGAA+AGG | 0.475413 | 5_3:+19701832 | Msa0804130:CDS |
| GGATTTACATGGCCTTGTGC+TGG | 0.486767 | 5_3:-19701639 | None:intergenic |
| TGGTCTTGAATTGTAGCTTA+GGG | 0.493157 | 5_3:-19701785 | None:intergenic |
| GCTTTAGCATTGGATTTACA+TGG | 0.505828 | 5_3:-19701650 | None:intergenic |
| CAAGAGCAATTTCTTCGAAG+TGG | 0.519005 | 5_3:+19702922 | Msa0804130:CDS |
| GCTATCCTTTCTCCAAATCC+AGG | 0.521331 | 5_3:-19701837 | None:intergenic |
| CATAAGAAACGTGCCAGGCA+TGG | 0.531082 | 5_3:+19702654 | Msa0804130:CDS |
| ACATGGCCTTGTGCTGGACA+TGG | 0.534043 | 5_3:-19701633 | None:intergenic |
| TGAAACTAATGAGACGGTTG+TGG | 0.551286 | 5_3:-19701731 | None:intergenic |
| GTATTGAGGTGGTGGTGAAG+AGG | 0.553325 | 5_3:-19702869 | None:intergenic |
| CATGGGAAGATTAGCAAATG+TGG | 0.557319 | 5_3:-19701615 | None:intergenic |
| GGTTTAATTTATAGGAGATG+AGG | 0.559641 | 5_3:+19702618 | Msa0804130:intron |
| CGCATCATAAGAAACGTGCC+AGG | 0.561151 | 5_3:+19702649 | Msa0804130:CDS |
| TATTGAGGTGGTGGTGAAGA+GGG | 0.568969 | 5_3:-19702868 | None:intergenic |
| GTGGTGGTGAAGAGGGCCAA+TGG | 0.570422 | 5_3:-19702861 | None:intergenic |
| CTCACTGTGAAAATCAGAGA+TGG | 0.579959 | 5_3:-19701805 | None:intergenic |
| GGCCAATGGTGTAGAGTCTG+GGG | 0.580965 | 5_3:-19702847 | None:intergenic |
| CATGGCCTTGTGCTGGACAT+GGG | 0.589394 | 5_3:-19701632 | None:intergenic |
| ACAATAATATCTTTCAACAA+AGG | 0.592002 | 5_3:-19701894 | None:intergenic |
| CGAAGTGGACAGAACTTGCA+TGG | 0.592196 | 5_3:+19702937 | Msa0804130:CDS |
| TATCATTGAAACTAATGAGA+CGG | 0.592738 | 5_3:-19701737 | None:intergenic |
| ATCTTCCCATGTCCAGCACA+AGG | 0.604045 | 5_3:+19701627 | Msa0804130:CDS |
| ATTTATAGGAGATGAGGACA+TGG | 0.611104 | 5_3:+19702624 | Msa0804130:intron |
| ACGAATTTGGGAGAGAACTG+GGG | 0.620956 | 5_3:-19702816 | None:intergenic |
| TGGACAGAACTTGCATGGTG+TGG | 0.671150 | 5_3:+19702942 | Msa0804130:CDS |
| TGTGGATGTACTCAGTGTTG+AGG | 0.692218 | 5_3:-19701713 | None:intergenic |
| GCCAATGGTGTAGAGTCTGG+GGG | 0.692520 | 5_3:-19702846 | None:intergenic |
| TAATGATACCATATTAGACA+AGG | 0.701143 | 5_3:+19702726 | Msa0804130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAACTAACAAAAATA+CGG | + | chr5_3:19702148-19702167 | Msa0804130:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTAACTTT+TGG | + | chr5_3:19702366-19702385 | Msa0804130:intron | 10.0% |
| !! | ATATCTAACTATTTAGTTAA+AGG | - | chr5_3:19702114-19702133 | None:intergenic | 15.0% |
| !!! | GTATTTTTGTTAGTTTAATT+AGG | - | chr5_3:19702149-19702168 | None:intergenic | 15.0% |
| !! | ACAATAATATCTTTCAACAA+AGG | - | chr5_3:19701897-19701916 | None:intergenic | 20.0% |
| !!! | GAAAATAAGTTGCATTATTT+TGG | + | chr5_3:19701923-19701942 | Msa0804130:CDS | 20.0% |
| !!! | ATTATTTTGGATGGAATATT+TGG | + | chr5_3:19701936-19701955 | Msa0804130:CDS | 20.0% |
| !! | TGAATTATTTCATCTTATCA+TGG | + | chr5_3:19702055-19702074 | Msa0804130:intron | 20.0% |
| ! | TATCATTGAAACTAATGAGA+CGG | - | chr5_3:19701740-19701759 | None:intergenic | 25.0% |
| !! | ATTTTATCACTGAGTTTGTA+TGG | + | chr5_3:19701867-19701886 | Msa0804130:CDS | 25.0% |
| !!! | ATAAGTTGCATTATTTTGGA+TGG | + | chr5_3:19701927-19701946 | Msa0804130:CDS | 25.0% |
| ! | AGTTAAAGGAAAAAGTAAAG+AGG | - | chr5_3:19702100-19702119 | None:intergenic | 25.0% |
| ! | ACACATAAGTAGATAAGTTA+GGG | - | chr5_3:19702182-19702201 | None:intergenic | 25.0% |
| ! | ATGCAACATTTGAATTAACT+TGG | + | chr5_3:19702283-19702302 | Msa0804130:intron | 25.0% |
| !!! | TAACTTGGTATGTTTGTTTT+AGG | + | chr5_3:19702298-19702317 | Msa0804130:intron | 25.0% |
| ! | TATGAAACACTTCTAATAGA+AGG | + | chr5_3:19702467-19702486 | Msa0804130:intron | 25.0% |
| !!! | AGTGTTCTGGTTTAATTTAT+AGG | + | chr5_3:19702610-19702629 | Msa0804130:intron | 25.0% |
| !! | TATCATTATCACCCATTTTA+CGG | - | chr5_3:19702714-19702733 | None:intergenic | 25.0% |
| ! | TAATGATACCATATTAGACA+AGG | + | chr5_3:19702726-19702745 | Msa0804130:CDS | 25.0% |
| ! | TTCTAACCCAACAATTAATA+AGG | + | chr5_3:19702755-19702774 | Msa0804130:CDS | 25.0% |
| !!! | ATGTTTTTTTTGTGGTATTG+AGG | - | chr5_3:19702886-19702905 | None:intergenic | 25.0% |
| !!! | TGATGATGATGTTTTTTTTG+TGG | - | chr5_3:19702894-19702913 | None:intergenic | 25.0% |
| !!! | ACATATACAACTGATTTTGA+TGG | - | chr5_3:19702980-19702999 | None:intergenic | 25.0% |
| GAAAAAGTAAAGAGGTAAAG+AGG | - | chr5_3:19702092-19702111 | None:intergenic | 30.0% | |
| CACACATAAGTAGATAAGTT+AGG | - | chr5_3:19702183-19702202 | None:intergenic | 30.0% | |
| ATGAAAAACTTCTAACAGTC+AGG | + | chr5_3:19702401-19702420 | Msa0804130:intron | 30.0% | |
| ! | AGATGAATTTTGCTACACAT+TGG | + | chr5_3:19702433-19702452 | Msa0804130:intron | 30.0% |
| TATGATCCATATAGAGTTGA+TGG | + | chr5_3:19702513-19702532 | Msa0804130:intron | 30.0% | |
| AATGAGTTATATGAGTGTTC+TGG | + | chr5_3:19702597-19702616 | Msa0804130:intron | 30.0% | |
| ! | GGTTTAATTTATAGGAGATG+AGG | + | chr5_3:19702618-19702637 | Msa0804130:intron | 30.0% |
| AAGTACAACCTTGTCTAATA+TGG | - | chr5_3:19702737-19702756 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGTGGTATTGAGG+TGG | - | chr5_3:19702883-19702902 | None:intergenic | 30.0% |
| ! | TGTGGAGAAGATTTTTCCTT+AGG | - | chr5_3:19701600-19701619 | None:intergenic | 35.0% |
| ! | GCTTTAGCATTGGATTTACA+TGG | - | chr5_3:19701653-19701672 | None:intergenic | 35.0% |
| ! | TGGTCTTGAATTGTAGCTTA+GGG | - | chr5_3:19701788-19701807 | None:intergenic | 35.0% |
| ! | ATGGTCTTGAATTGTAGCTT+AGG | - | chr5_3:19701789-19701808 | None:intergenic | 35.0% |
| TGACTATTGTCATCTAGTCT+AGG | + | chr5_3:19702210-19702229 | Msa0804130:intron | 35.0% | |
| TTCTCACCATCAACTCTATA+TGG | - | chr5_3:19702522-19702541 | None:intergenic | 35.0% | |
| ATTTATAGGAGATGAGGACA+TGG | + | chr5_3:19702624-19702643 | Msa0804130:intron | 35.0% | |
| TCTTCCAAGTTTCCGTAAAA+TGG | + | chr5_3:19702699-19702718 | Msa0804130:CDS | 35.0% | |
| CTTCCAAGTTTCCGTAAAAT+GGG | + | chr5_3:19702700-19702719 | Msa0804130:CDS | 35.0% | |
| ! | GCGTTGCCTTATTAATTGTT+GGG | - | chr5_3:19702764-19702783 | None:intergenic | 35.0% |
| ! | TGCGTTGCCTTATTAATTGT+TGG | - | chr5_3:19702765-19702784 | None:intergenic | 35.0% |
| TCAGTTGTATATGTCAGCTT+TGG | + | chr5_3:19702986-19703005 | Msa0804130:CDS | 35.0% | |
| CATGGGAAGATTAGCAAATG+TGG | - | chr5_3:19701618-19701637 | None:intergenic | 40.0% | |
| TGAAACTAATGAGACGGTTG+TGG | - | chr5_3:19701734-19701753 | None:intergenic | 40.0% | |
| CTCACTGTGAAAATCAGAGA+TGG | - | chr5_3:19701808-19701827 | None:intergenic | 40.0% | |
| ! | CATCTCTGATTTTCACAGTG+AGG | + | chr5_3:19701806-19701825 | Msa0804130:CDS | 40.0% |
| ! | TGGTGATCTTGCTACTGATT+TGG | + | chr5_3:19701956-19701975 | Msa0804130:CDS | 40.0% |
| ! | TCACCCATTTTACGGAAACT+TGG | - | chr5_3:19702706-19702725 | None:intergenic | 40.0% |
| !! | TTTTTGTGGTATTGAGGTGG+TGG | - | chr5_3:19702880-19702899 | None:intergenic | 40.0% |
| TTCGAAGAAATTGCTCTTGG+AGG | - | chr5_3:19702921-19702940 | None:intergenic | 40.0% | |
| CACTTCGAAGAAATTGCTCT+TGG | - | chr5_3:19702924-19702943 | None:intergenic | 40.0% | |
| CAAGAGCAATTTCTTCGAAG+TGG | + | chr5_3:19702922-19702941 | Msa0804130:CDS | 40.0% | |
| !! | AGCTCAGCTAGCTTTAGCAT+TGG | - | chr5_3:19701663-19701682 | None:intergenic | 45.0% |
| TGTGGATGTACTCAGTGTTG+AGG | - | chr5_3:19701716-19701735 | None:intergenic | 45.0% | |
| AGCATCCTGGATTTGGAGAA+AGG | + | chr5_3:19701832-19701851 | Msa0804130:CDS | 45.0% | |
| GCTATCCTTTCTCCAAATCC+AGG | - | chr5_3:19701840-19701859 | None:intergenic | 45.0% | |
| !! | ACTGATTTGGCTGCTGAGTT+TGG | + | chr5_3:19701969-19701988 | Msa0804130:CDS | 45.0% |
| !! | CTGATTTGGCTGCTGAGTTT+GGG | + | chr5_3:19701970-19701989 | Msa0804130:CDS | 45.0% |
| ACGAATTTGGGAGAGAACTG+GGG | - | chr5_3:19702819-19702838 | None:intergenic | 45.0% | |
| GACGAATTTGGGAGAGAACT+GGG | - | chr5_3:19702820-19702839 | None:intergenic | 45.0% | |
| AGACGAATTTGGGAGAGAAC+TGG | - | chr5_3:19702821-19702840 | None:intergenic | 45.0% | |
| ! | TATTGAGGTGGTGGTGAAGA+GGG | - | chr5_3:19702871-19702890 | None:intergenic | 45.0% |
| ATCTTCCCATGTCCAGCACA+AGG | + | chr5_3:19701627-19701646 | Msa0804130:CDS | 50.0% | |
| !! | GGATTTACATGGCCTTGTGC+TGG | - | chr5_3:19701642-19701661 | None:intergenic | 50.0% |
| !! | GAGGAGAAGCATCCTGGATT+TGG | + | chr5_3:19701825-19701844 | Msa0804130:CDS | 50.0% |
| CGCATCATAAGAAACGTGCC+AGG | + | chr5_3:19702649-19702668 | Msa0804130:CDS | 50.0% | |
| CATAAGAAACGTGCCAGGCA+TGG | + | chr5_3:19702654-19702673 | Msa0804130:CDS | 50.0% | |
| ! | CGAAGCAAGTTTTCCATGCC+TGG | - | chr5_3:19702670-19702689 | None:intergenic | 50.0% |
| ! | GGGGGCATGAAGACGAATTT+GGG | - | chr5_3:19702831-19702850 | None:intergenic | 50.0% |
| ! | TGGGGGCATGAAGACGAATT+TGG | - | chr5_3:19702832-19702851 | None:intergenic | 50.0% |
| ! | GTATTGAGGTGGTGGTGAAG+AGG | - | chr5_3:19702872-19702891 | None:intergenic | 50.0% |
| CGAAGTGGACAGAACTTGCA+TGG | + | chr5_3:19702937-19702956 | Msa0804130:CDS | 50.0% | |
| TGGACAGAACTTGCATGGTG+TGG | + | chr5_3:19702942-19702961 | Msa0804130:CDS | 50.0% | |
| !! | CATGGCCTTGTGCTGGACAT+GGG | - | chr5_3:19701635-19701654 | None:intergenic | 55.0% |
| !! | ACATGGCCTTGTGCTGGACA+TGG | - | chr5_3:19701636-19701655 | None:intergenic | 55.0% |
| !! | CACAGTGAGGAGAAGCATCC+TGG | + | chr5_3:19701819-19701838 | Msa0804130:CDS | 55.0% |
| GCCAATGGTGTAGAGTCTGG+GGG | - | chr5_3:19702849-19702868 | None:intergenic | 55.0% | |
| GGCCAATGGTGTAGAGTCTG+GGG | - | chr5_3:19702850-19702869 | None:intergenic | 55.0% | |
| GGGCCAATGGTGTAGAGTCT+GGG | - | chr5_3:19702851-19702870 | None:intergenic | 55.0% | |
| AGGGCCAATGGTGTAGAGTC+TGG | - | chr5_3:19702852-19702871 | None:intergenic | 55.0% | |
| GCCCCCAGACTCTACACCAT+TGG | + | chr5_3:19702845-19702864 | Msa0804130:CDS | 60.0% | |
| ! | GTGGTGGTGAAGAGGGCCAA+TGG | - | chr5_3:19702864-19702883 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19701585 | 19703044 | 19701585 | ID=Msa0804130;Name=Msa0804130 |
| chr5_3 | mRNA | 19701585 | 19703044 | 19701585 | ID=Msa0804130-mRNA-1;Parent=Msa0804130;Name=Msa0804130-mRNA-1;_AED=0.42;_eAED=0.57;_QI=0|0|0|1|1|1|2|0|279 |
| chr5_3 | exon | 19701585 | 19702011 | 19701585 | ID=Msa0804130-mRNA-1:exon:8082;Parent=Msa0804130-mRNA-1 |
| chr5_3 | exon | 19702632 | 19703044 | 19702632 | ID=Msa0804130-mRNA-1:exon:8083;Parent=Msa0804130-mRNA-1 |
| chr5_3 | CDS | 19701585 | 19702011 | 19701585 | ID=Msa0804130-mRNA-1:cds;Parent=Msa0804130-mRNA-1 |
| chr5_3 | CDS | 19702632 | 19703044 | 19702632 | ID=Msa0804130-mRNA-1:cds;Parent=Msa0804130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
