Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842810 | XP_003613209.1 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 5.91e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842810 | sp|Q9LDT3|YAB4_ARATH | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.30e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842810 | G7K086 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 2.83e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0842810 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0721990 | Msa0842810 | 0.806310 | 8.752647e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842810 | MtrunA17_Chr5g0413381 | 99.482 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 2.46e-144 | 400 |
| Msa0842810 | MtrunA17_Chr4g0063931 | 49.686 | 159 | 58 | 4 | 12 | 162 | 14 | 158 | 9.90e-45 | 147 |
| Msa0842810 | MtrunA17_Chr2g0322221 | 51.250 | 160 | 62 | 4 | 12 | 162 | 12 | 164 | 5.24e-44 | 145 |
| Msa0842810 | MtrunA17_Chr4g0025361 | 48.701 | 154 | 66 | 3 | 12 | 162 | 9 | 152 | 9.54e-41 | 137 |
| Msa0842810 | MtrunA17_Chr4g0011841 | 50.000 | 156 | 70 | 2 | 14 | 162 | 25 | 179 | 5.43e-40 | 136 |
| Msa0842810 | MtrunA17_Chr4g0056521 | 51.553 | 161 | 64 | 5 | 12 | 162 | 18 | 174 | 1.75e-39 | 135 |
| Msa0842810 | MtrunA17_Chr5g0419871 | 37.662 | 154 | 69 | 2 | 12 | 157 | 17 | 151 | 2.02e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842810 | AT1G23420.1 | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.37e-73 | 221 |
| Msa0842810 | AT1G23420.2 | 55.947 | 227 | 85 | 4 | 2 | 217 | 40 | 262 | 5.81e-73 | 222 |
| Msa0842810 | AT2G26580.2 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0842810 | AT2G26580.1 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0842810 | AT2G45190.1 | 46.061 | 165 | 79 | 1 | 8 | 162 | 19 | 183 | 1.05e-42 | 144 |
| Msa0842810 | AT1G08465.1 | 49.677 | 155 | 66 | 4 | 12 | 162 | 8 | 154 | 7.65e-41 | 137 |
| Msa0842810 | AT4G00180.1 | 45.810 | 179 | 71 | 5 | 8 | 162 | 19 | 195 | 8.36e-39 | 134 |
| Msa0842810 | AT4G00180.2 | 43.976 | 166 | 67 | 5 | 21 | 162 | 1 | 164 | 6.60e-30 | 110 |
| Msa0842810 | AT1G69180.1 | 40.385 | 156 | 73 | 4 | 12 | 163 | 19 | 158 | 5.99e-29 | 107 |
| Msa0842810 | AT2G45190.2 | 63.636 | 66 | 24 | 0 | 97 | 162 | 54 | 119 | 4.09e-25 | 97.1 |
Find 41 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAGAGAAGAGATTAAA+AGG | 0.220244 | 5_4:+20188554 | Msa0842810:intron |
| CATCACCTTTGCACTGAGTT+GGG | 0.247070 | 5_4:-20188819 | None:intergenic |
| GCTTCCTTGTGAGCCATATC+AGG | 0.254990 | 5_4:-20188592 | None:intergenic |
| ACTCATGGTTACCATTAAAA+TGG | 0.296363 | 5_4:-20187807 | None:intergenic |
| CTTTCCAAGATGGAATTTCT+TGG | 0.337983 | 5_4:-20189512 | None:intergenic |
| GGTGTTCTTTGTCTCTTCTC+TGG | 0.372695 | 5_4:-20188424 | None:intergenic |
| TGTACATAGCAAATCTGTTC+TGG | 0.376697 | 5_4:-20187767 | None:intergenic |
| TCATCACCTTTGCACTGAGT+TGG | 0.384038 | 5_4:-20188820 | None:intergenic |
| TATTCATTCATTCACTCAAA+TGG | 0.405002 | 5_4:-20189539 | None:intergenic |
| TTATTGACAACATTGCTGAT+TGG | 0.429525 | 5_4:-20188292 | None:intergenic |
| CAGCTTCATGAGGGTCCACT+TGG | 0.437038 | 5_4:-20188885 | None:intergenic |
| ATCACCTTTGCACTGAGTTG+GGG | 0.440172 | 5_4:-20188818 | None:intergenic |
| GATCCACAAATTGATCTGTC+TGG | 0.455209 | 5_4:-20188855 | None:intergenic |
| GAGTAAGAGATGCTAAAAGA+TGG | 0.492314 | 5_4:-20188039 | None:intergenic |
| ACAAGGATTCCGTGGAAGAA+AGG | 0.512794 | 5_4:+20189487 | Msa0842810:CDS |
| AGCATCTCTTACTCATCTTG+AGG | 0.521370 | 5_4:+20188048 | Msa0842810:CDS |
| GGTACCAAGAAATTCCATCT+TGG | 0.522438 | 5_4:+20189508 | Msa0842810:CDS |
| AGCTTCATGAGGGTCCACTT+GGG | 0.522893 | 5_4:-20188884 | None:intergenic |
| ACAATCAGAATAAGTCATCA+TGG | 0.529221 | 5_4:-20188251 | None:intergenic |
| AAATGGTGTCCTTTCCAAGA+TGG | 0.529231 | 5_4:-20189522 | None:intergenic |
| TAGCCAGACAGATCAATTTG+TGG | 0.529249 | 5_4:+20188852 | Msa0842810:CDS |
| AGAAGAGATTAAAAGGCTAA+AGG | 0.529887 | 5_4:+20188561 | Msa0842810:CDS |
| ATATTAATTACTTGATGAAG+CGG | 0.533614 | 5_4:-20188459 | None:intergenic |
| AGAGATGCTAAAAGATGGAA+AGG | 0.537612 | 5_4:-20188034 | None:intergenic |
| TTCTTGGTACCTTTCTTCCA+CGG | 0.541076 | 5_4:-20189496 | None:intergenic |
| CTTCCTTGTGAGCCATATCA+GGG | 0.545406 | 5_4:-20188591 | None:intergenic |
| ACCATTGTCAAACTGCTGCA+TGG | 0.563063 | 5_4:-20187944 | None:intergenic |
| CAGGTGAATGAAGAAGAACA+AGG | 0.564909 | 5_4:+20189470 | Msa0842810:intron |
| GAAGAAGAACAAGGATTCCG+TGG | 0.572480 | 5_4:+20189479 | Msa0842810:CDS |
| AAACCCTGATATGGCTCACA+AGG | 0.577441 | 5_4:+20188588 | Msa0842810:CDS |
| CAAGAAATTCCATCTTGGAA+AGG | 0.597804 | 5_4:+20189513 | Msa0842810:CDS |
| TCACCTTTGCACTGAGTTGG+GGG | 0.601505 | 5_4:-20188817 | None:intergenic |
| GATGACTTATTCTGATTGTG+AGG | 0.620697 | 5_4:+20188255 | Msa0842810:CDS |
| GAGATGCTAAAAGATGGAAA+GGG | 0.631422 | 5_4:-20188033 | None:intergenic |
| CAGATTTGCTATGTACAATG+TGG | 0.632418 | 5_4:+20187773 | Msa0842810:CDS |
| AGTGGACCCTCATGAAGCTG+AGG | 0.650640 | 5_4:+20188888 | Msa0842810:CDS |
| TCCATGCAGCAGTTTGACAA+TGG | 0.655787 | 5_4:+20187943 | Msa0842810:CDS |
| ATGAAGCGGTTATAAGCTGA+TGG | 0.663979 | 5_4:-20188445 | None:intergenic |
| TGTGGATCTTGACTCCCAAG+TGG | 0.667148 | 5_4:+20188870 | Msa0842810:CDS |
| ATGCAGCAGTTTGACAATGG+TGG | 0.669140 | 5_4:+20187946 | Msa0842810:CDS |
| ATGGTGGTGACAGTAAGATG+TGG | 0.764759 | 5_4:+20187962 | Msa0842810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_4:20188785-20188804 | Msa0842810:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_4:20188786-20188805 | Msa0842810:intron | 10.0% |
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_4:20188785-20188804 | Msa0842810:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_4:20188786-20188805 | Msa0842810:intron | 10.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_4:20188095-20188114 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_4:20188100-20188119 | Msa0842810:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_4:20188725-20188744 | Msa0842810:intron | 15.0% |
| !!! | CAAAGCATAATATTTTTAAA+AGG | - | chr5_4:20189253-20189272 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_4:20188095-20188114 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_4:20188100-20188119 | Msa0842810:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_4:20188725-20188744 | Msa0842810:intron | 15.0% |
| !!! | CAAAGCATAATATTTTTAAA+AGG | - | chr5_4:20189253-20189272 | None:intergenic | 15.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_4:20188462-20188481 | None:intergenic | 20.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_4:20188462-20188481 | None:intergenic | 20.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_4:20187796-20187815 | Msa0842810:CDS | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_4:20187842-20187861 | Msa0842810:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_4:20188708-20188727 | Msa0842810:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_4:20189006-20189025 | Msa0842810:intron | 25.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_4:20187796-20187815 | Msa0842810:CDS | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_4:20187842-20187861 | Msa0842810:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_4:20188708-20188727 | Msa0842810:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_4:20189006-20189025 | Msa0842810:intron | 25.0% |
| ACTCATGGTTACCATTAAAA+TGG | - | chr5_4:20187810-20187829 | None:intergenic | 30.0% | |
| AAGAGCAATTAGAAAACTCA+TGG | - | chr5_4:20187825-20187844 | None:intergenic | 30.0% | |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_4:20188254-20188273 | None:intergenic | 30.0% | |
| TTATTGACAACATTGCTGAT+TGG | - | chr5_4:20188295-20188314 | None:intergenic | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_4:20188554-20188573 | Msa0842810:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_4:20188561-20188580 | Msa0842810:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_4:20188683-20188702 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_4:20189023-20189042 | Msa0842810:intron | 30.0% | |
| GTCTCTTTCTTTATATCACA+TGG | + | chr5_4:20189072-20189091 | Msa0842810:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_4:20189085-20189104 | Msa0842810:intron | 30.0% | |
| ACTTTATATCCTCATCTTGT+TGG | + | chr5_4:20189134-20189153 | Msa0842810:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_4:20189237-20189256 | None:intergenic | 30.0% | |
| ! | AAAACAGGTAGGTTTTTCTT+TGG | - | chr5_4:20189400-20189419 | None:intergenic | 30.0% |
| ACTCATGGTTACCATTAAAA+TGG | - | chr5_4:20187810-20187829 | None:intergenic | 30.0% | |
| AAGAGCAATTAGAAAACTCA+TGG | - | chr5_4:20187825-20187844 | None:intergenic | 30.0% | |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_4:20188254-20188273 | None:intergenic | 30.0% | |
| TTATTGACAACATTGCTGAT+TGG | - | chr5_4:20188295-20188314 | None:intergenic | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_4:20188554-20188573 | Msa0842810:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_4:20188561-20188580 | Msa0842810:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_4:20188683-20188702 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_4:20189023-20189042 | Msa0842810:intron | 30.0% | |
| GTCTCTTTCTTTATATCACA+TGG | + | chr5_4:20189072-20189091 | Msa0842810:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_4:20189085-20189104 | Msa0842810:intron | 30.0% | |
| ACTTTATATCCTCATCTTGT+TGG | + | chr5_4:20189134-20189153 | Msa0842810:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_4:20189237-20189256 | None:intergenic | 30.0% | |
| ! | AAAACAGGTAGGTTTTTCTT+TGG | - | chr5_4:20189400-20189419 | None:intergenic | 30.0% |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_4:20187754-20187773 | None:intergenic | 35.0% |
| TGTACATAGCAAATCTGTTC+TGG | - | chr5_4:20187770-20187789 | None:intergenic | 35.0% | |
| !! | CAGATTTGCTATGTACAATG+TGG | + | chr5_4:20187773-20187792 | Msa0842810:CDS | 35.0% |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_4:20187913-20187932 | Msa0842810:intron | 35.0% | |
| GAGATGCTAAAAGATGGAAA+GGG | - | chr5_4:20188036-20188055 | None:intergenic | 35.0% | |
| AGAGATGCTAAAAGATGGAA+AGG | - | chr5_4:20188037-20188056 | None:intergenic | 35.0% | |
| GAGTAAGAGATGCTAAAAGA+TGG | - | chr5_4:20188042-20188061 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTGCATCTTCATC+TGG | - | chr5_4:20188208-20188227 | None:intergenic | 35.0% |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_4:20188255-20188274 | Msa0842810:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_4:20188579-20188598 | Msa0842810:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_4:20188620-20188639 | Msa0842810:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_4:20188745-20188764 | Msa0842810:intron | 35.0% | |
| ! | TTTTTACCTCAGCTTCATGA+GGG | - | chr5_4:20188897-20188916 | None:intergenic | 35.0% |
| TACAGATCACAAAAACAGGT+AGG | - | chr5_4:20189411-20189430 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_4:20189515-20189534 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_4:20189513-20189532 | Msa0842810:CDS | 35.0% | |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_4:20187754-20187773 | None:intergenic | 35.0% |
| TGTACATAGCAAATCTGTTC+TGG | - | chr5_4:20187770-20187789 | None:intergenic | 35.0% | |
| !! | CAGATTTGCTATGTACAATG+TGG | + | chr5_4:20187773-20187792 | Msa0842810:CDS | 35.0% |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_4:20187913-20187932 | Msa0842810:intron | 35.0% | |
| GAGATGCTAAAAGATGGAAA+GGG | - | chr5_4:20188036-20188055 | None:intergenic | 35.0% | |
| AGAGATGCTAAAAGATGGAA+AGG | - | chr5_4:20188037-20188056 | None:intergenic | 35.0% | |
| GAGTAAGAGATGCTAAAAGA+TGG | - | chr5_4:20188042-20188061 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTGCATCTTCATC+TGG | - | chr5_4:20188208-20188227 | None:intergenic | 35.0% |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_4:20188255-20188274 | Msa0842810:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_4:20188579-20188598 | Msa0842810:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_4:20188620-20188639 | Msa0842810:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_4:20188745-20188764 | Msa0842810:intron | 35.0% | |
| ! | TTTTTACCTCAGCTTCATGA+GGG | - | chr5_4:20188897-20188916 | None:intergenic | 35.0% |
| TACAGATCACAAAAACAGGT+AGG | - | chr5_4:20189411-20189430 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_4:20189515-20189534 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_4:20189513-20189532 | Msa0842810:CDS | 35.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_4:20188048-20188067 | Msa0842810:CDS | 40.0% | |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_4:20188448-20188467 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_4:20188852-20188871 | Msa0842810:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_4:20188858-20188877 | None:intergenic | 40.0% | |
| ! | GTTTTTACCTCAGCTTCATG+AGG | - | chr5_4:20188898-20188917 | None:intergenic | 40.0% |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_4:20189106-20189125 | Msa0842810:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_4:20189117-20189136 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_4:20189146-20189165 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_4:20189163-20189182 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_4:20189169-20189188 | Msa0842810:intron | 40.0% | |
| TCTGCAAGAACTTTCCAGTT+TGG | - | chr5_4:20189186-20189205 | None:intergenic | 40.0% | |
| CTGCTACAGATCACAAAAAC+AGG | - | chr5_4:20189415-20189434 | None:intergenic | 40.0% | |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_4:20189451-20189470 | Msa0842810:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_4:20189470-20189489 | Msa0842810:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_4:20189499-20189518 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_4:20189508-20189527 | Msa0842810:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_4:20189525-20189544 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_4:20188048-20188067 | Msa0842810:CDS | 40.0% | |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_4:20188448-20188467 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_4:20188852-20188871 | Msa0842810:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_4:20188858-20188877 | None:intergenic | 40.0% | |
| ! | GTTTTTACCTCAGCTTCATG+AGG | - | chr5_4:20188898-20188917 | None:intergenic | 40.0% |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_4:20189106-20189125 | Msa0842810:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_4:20189117-20189136 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_4:20189146-20189165 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_4:20189163-20189182 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_4:20189169-20189188 | Msa0842810:intron | 40.0% | |
| TCTGCAAGAACTTTCCAGTT+TGG | - | chr5_4:20189186-20189205 | None:intergenic | 40.0% | |
| CTGCTACAGATCACAAAAAC+AGG | - | chr5_4:20189415-20189434 | None:intergenic | 40.0% | |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_4:20189451-20189470 | Msa0842810:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_4:20189470-20189489 | Msa0842810:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_4:20189499-20189518 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_4:20189508-20189527 | Msa0842810:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_4:20189525-20189544 | None:intergenic | 40.0% | |
| TCCATGCAGCAGTTTGACAA+TGG | + | chr5_4:20187943-20187962 | Msa0842810:CDS | 45.0% | |
| ACCATTGTCAAACTGCTGCA+TGG | - | chr5_4:20187947-20187966 | None:intergenic | 45.0% | |
| ATGCAGCAGTTTGACAATGG+TGG | + | chr5_4:20187946-20187965 | Msa0842810:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_4:20187962-20187981 | Msa0842810:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_4:20188427-20188446 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_4:20188588-20188607 | Msa0842810:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_4:20188594-20188613 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_4:20188821-20188840 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_4:20188822-20188841 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_4:20188823-20188842 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_4:20189044-20189063 | Msa0842810:intron | 45.0% | |
| GCAAGAACTTTCCAGTTTGG+TGG | - | chr5_4:20189183-20189202 | None:intergenic | 45.0% | |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_4:20189479-20189498 | Msa0842810:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_4:20189487-20189506 | Msa0842810:CDS | 45.0% | |
| TCCATGCAGCAGTTTGACAA+TGG | + | chr5_4:20187943-20187962 | Msa0842810:CDS | 45.0% | |
| ACCATTGTCAAACTGCTGCA+TGG | - | chr5_4:20187947-20187966 | None:intergenic | 45.0% | |
| ATGCAGCAGTTTGACAATGG+TGG | + | chr5_4:20187946-20187965 | Msa0842810:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_4:20187962-20187981 | Msa0842810:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_4:20188427-20188446 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_4:20188588-20188607 | Msa0842810:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_4:20188594-20188613 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_4:20188821-20188840 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_4:20188822-20188841 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_4:20188823-20188842 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_4:20189044-20189063 | Msa0842810:intron | 45.0% | |
| GCAAGAACTTTCCAGTTTGG+TGG | - | chr5_4:20189183-20189202 | None:intergenic | 45.0% | |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_4:20189479-20189498 | Msa0842810:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_4:20189487-20189506 | Msa0842810:CDS | 45.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_4:20188595-20188614 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_4:20188820-20188839 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_4:20188870-20188889 | Msa0842810:CDS | 50.0% | |
| AGCTTCATGAGGGTCCACTT+GGG | - | chr5_4:20188887-20188906 | None:intergenic | 50.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_4:20188595-20188614 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_4:20188820-20188839 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_4:20188870-20188889 | Msa0842810:CDS | 50.0% | |
| AGCTTCATGAGGGTCCACTT+GGG | - | chr5_4:20188887-20188906 | None:intergenic | 50.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_4:20188814-20188833 | Msa0842810:CDS | 55.0% | |
| CAGCTTCATGAGGGTCCACT+TGG | - | chr5_4:20188888-20188907 | None:intergenic | 55.0% | |
| AGTGGACCCTCATGAAGCTG+AGG | + | chr5_4:20188888-20188907 | Msa0842810:CDS | 55.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_4:20188814-20188833 | Msa0842810:CDS | 55.0% | |
| CAGCTTCATGAGGGTCCACT+TGG | - | chr5_4:20188888-20188907 | None:intergenic | 55.0% | |
| AGTGGACCCTCATGAAGCTG+AGG | + | chr5_4:20188888-20188907 | Msa0842810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 20187737 | 20189550 | 20187737 | ID=Msa0842810;Name=Msa0842810 |
| chr5_4 | mRNA | 20187737 | 20189550 | 20187737 | ID=Msa0842810-mRNA-1;Parent=Msa0842810;Name=Msa0842810-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.66|0.42|1|1|1|7|0|217 |
| chr5_4 | exon | 20187737 | 20187817 | 20187737 | ID=Msa0842810-mRNA-1:exon:8314;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20187935 | 20188069 | 20187935 | ID=Msa0842810-mRNA-1:exon:8315;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20188187 | 20188316 | 20188187 | ID=Msa0842810-mRNA-1:exon:8316;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20188422 | 20188470 | 20188422 | ID=Msa0842810-mRNA-1:exon:8317;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20188561 | 20188636 | 20188561 | ID=Msa0842810-mRNA-1:exon:8318;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20188805 | 20188909 | 20188805 | ID=Msa0842810-mRNA-1:exon:8319;Parent=Msa0842810-mRNA-1 |
| chr5_4 | exon | 20189473 | 20189550 | 20189473 | ID=Msa0842810-mRNA-1:exon:8320;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20187737 | 20187817 | 20187737 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20187935 | 20188069 | 20187935 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20188187 | 20188316 | 20188187 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20188422 | 20188470 | 20188422 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20188561 | 20188636 | 20188561 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20188805 | 20188909 | 20188805 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| chr5_4 | CDS | 20189473 | 20189550 | 20189473 | ID=Msa0842810-mRNA-1:cds;Parent=Msa0842810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
