Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721990 | XP_003613209.1 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 5.91e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721990 | sp|Q9LDT3|YAB4_ARATH | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.30e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721990 | G7K086 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 2.83e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0721990 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0721990 | Msa0842810 | 0.806310 | 8.752647e-50 | -8.615850e-47 |
| Msa0721990 | Msa1420060 | 0.812825 | 3.487829e-51 | -8.615850e-47 |
| Msa0161100 | Msa0721990 | 0.817136 | 3.856080e-52 | -8.615850e-47 |
| Msa0161210 | Msa0721990 | 0.801453 | 8.939002e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721990 | MtrunA17_Chr5g0413381 | 99.482 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 2.46e-144 | 400 |
| Msa0721990 | MtrunA17_Chr4g0063931 | 49.686 | 159 | 58 | 4 | 12 | 162 | 14 | 158 | 9.90e-45 | 147 |
| Msa0721990 | MtrunA17_Chr2g0322221 | 51.250 | 160 | 62 | 4 | 12 | 162 | 12 | 164 | 5.24e-44 | 145 |
| Msa0721990 | MtrunA17_Chr4g0025361 | 48.701 | 154 | 66 | 3 | 12 | 162 | 9 | 152 | 9.54e-41 | 137 |
| Msa0721990 | MtrunA17_Chr4g0011841 | 50.000 | 156 | 70 | 2 | 14 | 162 | 25 | 179 | 5.43e-40 | 136 |
| Msa0721990 | MtrunA17_Chr4g0056521 | 51.553 | 161 | 64 | 5 | 12 | 162 | 18 | 174 | 1.75e-39 | 135 |
| Msa0721990 | MtrunA17_Chr5g0419871 | 37.662 | 154 | 69 | 2 | 12 | 157 | 17 | 151 | 2.02e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721990 | AT1G23420.1 | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.37e-73 | 221 |
| Msa0721990 | AT1G23420.2 | 55.947 | 227 | 85 | 4 | 2 | 217 | 40 | 262 | 5.81e-73 | 222 |
| Msa0721990 | AT2G26580.2 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0721990 | AT2G26580.1 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.76e-46 | 151 |
| Msa0721990 | AT2G45190.1 | 46.061 | 165 | 79 | 1 | 8 | 162 | 19 | 183 | 1.05e-42 | 144 |
| Msa0721990 | AT1G08465.1 | 49.677 | 155 | 66 | 4 | 12 | 162 | 8 | 154 | 7.65e-41 | 137 |
| Msa0721990 | AT4G00180.1 | 45.810 | 179 | 71 | 5 | 8 | 162 | 19 | 195 | 8.36e-39 | 134 |
| Msa0721990 | AT4G00180.2 | 43.976 | 166 | 67 | 5 | 21 | 162 | 1 | 164 | 6.60e-30 | 110 |
| Msa0721990 | AT1G69180.1 | 40.385 | 156 | 73 | 4 | 12 | 163 | 19 | 158 | 5.99e-29 | 107 |
| Msa0721990 | AT2G45190.2 | 63.636 | 66 | 24 | 0 | 97 | 162 | 54 | 119 | 4.09e-25 | 97.1 |
Find 43 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAGAGAAGAGATTAAA+AGG | 0.220244 | 5_1:+19141769 | Msa0721990:intron |
| CATCACCTTTGCACTGAGTT+GGG | 0.247070 | 5_1:-19142034 | None:intergenic |
| GCTTCCTTGTGAGCCATATC+AGG | 0.254990 | 5_1:-19141807 | None:intergenic |
| ACTCATGATTACCATTAAAA+TGG | 0.296363 | 5_1:-19141030 | None:intergenic |
| CTTTCCAAGATGGAATTTCT+TGG | 0.337983 | 5_1:-19143006 | None:intergenic |
| GTCTTGTTTGCATCTTCATC+TGG | 0.344790 | 5_1:-19141428 | None:intergenic |
| GATGAGTAAGAGATGCTAAA+AGG | 0.346967 | 5_1:-19141265 | None:intergenic |
| TGTACATAGCATATCTGTTC+TGG | 0.364295 | 5_1:-19140990 | None:intergenic |
| GGTGTTCTTTGTCTCTTCTC+TGG | 0.372695 | 5_1:-19141636 | None:intergenic |
| TCATCACCTTTGCACTGAGT+TGG | 0.384038 | 5_1:-19142035 | None:intergenic |
| TATTCATTCATTCACTCAAA+TGG | 0.405002 | 5_1:-19143033 | None:intergenic |
| TTATTGACTACATTGCTGAT+TGG | 0.408933 | 5_1:-19141515 | None:intergenic |
| CAGCTTCATGAGGGTCCACT+TGG | 0.437038 | 5_1:-19142100 | None:intergenic |
| ATCACCTTTGCACTGAGTTG+GGG | 0.440172 | 5_1:-19142033 | None:intergenic |
| GATCCACAAATTGATCTGTC+TGG | 0.455209 | 5_1:-19142070 | None:intergenic |
| ACAAGGATTCCGTGGAAGAA+AGG | 0.512794 | 5_1:+19142981 | Msa0721990:CDS |
| AGCATCTCTTACTCATCTTG+AGG | 0.521370 | 5_1:+19141271 | Msa0721990:CDS |
| GGTACCAAGAAATTCCATCT+TGG | 0.522438 | 5_1:+19143002 | Msa0721990:CDS |
| AGCTTCATGAGGGTCCACTT+GGG | 0.522893 | 5_1:-19142099 | None:intergenic |
| ACAATCAGAATAAGTCATCA+TGG | 0.529221 | 5_1:-19141474 | None:intergenic |
| AAATGGTGTCCTTTCCAAGA+TGG | 0.529231 | 5_1:-19143016 | None:intergenic |
| TAGCCAGACAGATCAATTTG+TGG | 0.529249 | 5_1:+19142067 | Msa0721990:CDS |
| AGAAGAGATTAAAAGGCTAA+AGG | 0.529887 | 5_1:+19141776 | Msa0721990:CDS |
| ATATTAATTACTTGATGAAG+CGG | 0.533614 | 5_1:-19141671 | None:intergenic |
| TTCTTGGTACCTTTCTTCCA+CGG | 0.541076 | 5_1:-19142990 | None:intergenic |
| CTTCCTTGTGAGCCATATCA+GGG | 0.545406 | 5_1:-19141806 | None:intergenic |
| GAGATGCTAAAAGGTGGAAA+GGG | 0.553103 | 5_1:-19141256 | None:intergenic |
| AGAGATGCTAAAAGGTGGAA+AGG | 0.557063 | 5_1:-19141257 | None:intergenic |
| GAGTAAGAGATGCTAAAAGG+TGG | 0.562368 | 5_1:-19141262 | None:intergenic |
| ACCATTGTCAAACTGCTGCA+TGG | 0.563063 | 5_1:-19141167 | None:intergenic |
| CAGGTGAATGAAGAAGAACA+AGG | 0.564909 | 5_1:+19142964 | Msa0721990:intron |
| GAAGAAGAACAAGGATTCCG+TGG | 0.572480 | 5_1:+19142973 | Msa0721990:CDS |
| AAACCCTGATATGGCTCACA+AGG | 0.577441 | 5_1:+19141803 | Msa0721990:CDS |
| CAAGAAATTCCATCTTGGAA+AGG | 0.597804 | 5_1:+19143007 | Msa0721990:CDS |
| TCACCTTTGCACTGAGTTGG+GGG | 0.601505 | 5_1:-19142032 | None:intergenic |
| GATGACTTATTCTGATTGTG+AGG | 0.620697 | 5_1:+19141478 | Msa0721990:CDS |
| AGTGGACCCTCATGAAGCTG+AGG | 0.650640 | 5_1:+19142103 | Msa0721990:CDS |
| TCCATGCAGCAGTTTGACAA+TGG | 0.655787 | 5_1:+19141166 | Msa0721990:CDS |
| CAGATATGCTATGTACAATG+TGG | 0.657256 | 5_1:+19140996 | Msa0721990:CDS |
| ATGAAGCGGTTATAAGCTGA+TGG | 0.663979 | 5_1:-19141657 | None:intergenic |
| TGTGGATCTTGACTCCCAAG+TGG | 0.667148 | 5_1:+19142085 | Msa0721990:CDS |
| ATGCAGCAGTTTGACAATGG+TGG | 0.669140 | 5_1:+19141169 | Msa0721990:CDS |
| ATGGTGGTGACAGTAAGATG+TGG | 0.764759 | 5_1:+19141185 | Msa0721990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_1:19142000-19142019 | Msa0721990:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_1:19142001-19142020 | Msa0721990:intron | 10.0% |
| !! | TAATATAGTAAATAAATAAG+GGG | + | chr5_1:19142503-19142522 | Msa0721990:intron | 10.0% |
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5_1:19142000-19142019 | Msa0721990:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5_1:19142001-19142020 | Msa0721990:intron | 10.0% |
| !! | TAATATAGTAAATAAATAAG+GGG | + | chr5_1:19142503-19142522 | Msa0721990:intron | 10.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_1:19141318-19141337 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_1:19141323-19141342 | Msa0721990:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_1:19141940-19141959 | Msa0721990:intron | 15.0% |
| !! | TCATGTTGTATTTATTTATT+GGG | - | chr5_1:19142811-19142830 | None:intergenic | 15.0% |
| !! | ATCATGTTGTATTTATTTAT+TGG | - | chr5_1:19142812-19142831 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5_1:19141318-19141337 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5_1:19141323-19141342 | Msa0721990:intron | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5_1:19141940-19141959 | Msa0721990:intron | 15.0% |
| !! | TCATGTTGTATTTATTTATT+GGG | - | chr5_1:19142811-19142830 | None:intergenic | 15.0% |
| !! | ATCATGTTGTATTTATTTAT+TGG | - | chr5_1:19142812-19142831 | None:intergenic | 15.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_1:19141674-19141693 | None:intergenic | 20.0% |
| !!! | CGAAGCATAATATTTTTAAA+AGG | - | chr5_1:19142468-19142487 | None:intergenic | 20.0% |
| !! | AAAGTAGTTAAATACACTTA+AGG | + | chr5_1:19142731-19142750 | Msa0721990:intron | 20.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5_1:19141674-19141693 | None:intergenic | 20.0% |
| !!! | CGAAGCATAATATTTTTAAA+AGG | - | chr5_1:19142468-19142487 | None:intergenic | 20.0% |
| !! | AAAGTAGTTAAATACACTTA+AGG | + | chr5_1:19142731-19142750 | Msa0721990:intron | 20.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_1:19141019-19141038 | Msa0721990:CDS | 25.0% |
| ! | ACTCATGATTACCATTAAAA+TGG | - | chr5_1:19141033-19141052 | None:intergenic | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_1:19141065-19141084 | Msa0721990:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_1:19141923-19141942 | Msa0721990:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_1:19142221-19142240 | Msa0721990:intron | 25.0% |
| ! | ACACCTTAATAAAATCTAGT+GGG | - | chr5_1:19142543-19142562 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr5_1:19142586-19142605 | Msa0721990:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5_1:19142625-19142644 | Msa0721990:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr5_1:19142625-19142644 | None:intergenic | 25.0% |
| ! | TATAGATTACAAAAACAGGT+AGG | - | chr5_1:19142905-19142924 | None:intergenic | 25.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5_1:19141019-19141038 | Msa0721990:CDS | 25.0% |
| ! | ACTCATGATTACCATTAAAA+TGG | - | chr5_1:19141033-19141052 | None:intergenic | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5_1:19141065-19141084 | Msa0721990:intron | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5_1:19141923-19141942 | Msa0721990:intron | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5_1:19142221-19142240 | Msa0721990:intron | 25.0% |
| ! | ACACCTTAATAAAATCTAGT+GGG | - | chr5_1:19142543-19142562 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr5_1:19142586-19142605 | Msa0721990:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5_1:19142625-19142644 | Msa0721990:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr5_1:19142625-19142644 | None:intergenic | 25.0% |
| ! | TATAGATTACAAAAACAGGT+AGG | - | chr5_1:19142905-19142924 | None:intergenic | 25.0% |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_1:19141477-19141496 | None:intergenic | 30.0% | |
| ! | TTATTGACTACATTGCTGAT+TGG | - | chr5_1:19141518-19141537 | None:intergenic | 30.0% |
| ATGTAGTCAATAAACGTATG+TGG | + | chr5_1:19141525-19141544 | Msa0721990:intron | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_1:19141769-19141788 | Msa0721990:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_1:19141776-19141795 | Msa0721990:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_1:19141898-19141917 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_1:19142238-19142257 | Msa0721990:intron | 30.0% | |
| GTCTCTTTCTTTATATCACA+TGG | + | chr5_1:19142287-19142306 | Msa0721990:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_1:19142300-19142319 | Msa0721990:intron | 30.0% | |
| ACTTTATATCCTCATCTTGT+TGG | + | chr5_1:19142349-19142368 | Msa0721990:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_1:19142452-19142471 | None:intergenic | 30.0% | |
| ! | AAATAAATAAGGGGTTTGCT+AGG | + | chr5_1:19142512-19142531 | Msa0721990:intron | 30.0% |
| ! | ACACCCACTAGATTTTATTA+AGG | + | chr5_1:19142537-19142556 | Msa0721990:intron | 30.0% |
| CACACCTTAATAAAATCTAG+TGG | - | chr5_1:19142544-19142563 | None:intergenic | 30.0% | |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | chr5_1:19142604-19142623 | None:intergenic | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr5_1:19142624-19142643 | Msa0721990:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5_1:19142684-19142703 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr5_1:19142684-19142703 | Msa0721990:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr5_1:19142624-19142643 | None:intergenic | 30.0% |
| ! | AAAACAGGTAGGTTTTTCTT+TGG | - | chr5_1:19142894-19142913 | None:intergenic | 30.0% |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5_1:19141477-19141496 | None:intergenic | 30.0% | |
| ! | TTATTGACTACATTGCTGAT+TGG | - | chr5_1:19141518-19141537 | None:intergenic | 30.0% |
| ATGTAGTCAATAAACGTATG+TGG | + | chr5_1:19141525-19141544 | Msa0721990:intron | 30.0% | |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5_1:19141769-19141788 | Msa0721990:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5_1:19141776-19141795 | Msa0721990:CDS | 30.0% | |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5_1:19141898-19141917 | None:intergenic | 30.0% |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5_1:19142238-19142257 | Msa0721990:intron | 30.0% | |
| GTCTCTTTCTTTATATCACA+TGG | + | chr5_1:19142287-19142306 | Msa0721990:intron | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5_1:19142300-19142319 | Msa0721990:intron | 30.0% | |
| ACTTTATATCCTCATCTTGT+TGG | + | chr5_1:19142349-19142368 | Msa0721990:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5_1:19142452-19142471 | None:intergenic | 30.0% | |
| ! | AAATAAATAAGGGGTTTGCT+AGG | + | chr5_1:19142512-19142531 | Msa0721990:intron | 30.0% |
| ! | ACACCCACTAGATTTTATTA+AGG | + | chr5_1:19142537-19142556 | Msa0721990:intron | 30.0% |
| CACACCTTAATAAAATCTAG+TGG | - | chr5_1:19142544-19142563 | None:intergenic | 30.0% | |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | chr5_1:19142604-19142623 | None:intergenic | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr5_1:19142624-19142643 | Msa0721990:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5_1:19142684-19142703 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr5_1:19142684-19142703 | Msa0721990:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr5_1:19142624-19142643 | None:intergenic | 30.0% |
| ! | AAAACAGGTAGGTTTTTCTT+TGG | - | chr5_1:19142894-19142913 | None:intergenic | 30.0% |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_1:19140977-19140996 | None:intergenic | 35.0% |
| TGTACATAGCATATCTGTTC+TGG | - | chr5_1:19140993-19141012 | None:intergenic | 35.0% | |
| CAGATATGCTATGTACAATG+TGG | + | chr5_1:19140996-19141015 | Msa0721990:CDS | 35.0% | |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_1:19141136-19141155 | Msa0721990:intron | 35.0% | |
| GATGAGTAAGAGATGCTAAA+AGG | - | chr5_1:19141268-19141287 | None:intergenic | 35.0% | |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_1:19141478-19141497 | Msa0721990:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_1:19141794-19141813 | Msa0721990:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_1:19141835-19141854 | Msa0721990:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_1:19141960-19141979 | Msa0721990:intron | 35.0% | |
| ! | TTTTTACCTCAGCTTCATGA+GGG | - | chr5_1:19142112-19142131 | None:intergenic | 35.0% |
| TGTATGTTAGCAACTCCTAT+AGG | + | chr5_1:19142648-19142667 | Msa0721990:intron | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | + | chr5_1:19142770-19142789 | Msa0721990:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr5_1:19142776-19142795 | None:intergenic | 35.0% |
| CGGCTATAGATTACAAAAAC+AGG | - | chr5_1:19142909-19142928 | None:intergenic | 35.0% | |
| GTTCTTGCAATTGTCAAGTA+CGG | - | chr5_1:19142929-19142948 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_1:19143009-19143028 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_1:19143007-19143026 | Msa0721990:CDS | 35.0% | |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5_1:19140977-19140996 | None:intergenic | 35.0% |
| TGTACATAGCATATCTGTTC+TGG | - | chr5_1:19140993-19141012 | None:intergenic | 35.0% | |
| CAGATATGCTATGTACAATG+TGG | + | chr5_1:19140996-19141015 | Msa0721990:CDS | 35.0% | |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5_1:19141136-19141155 | Msa0721990:intron | 35.0% | |
| GATGAGTAAGAGATGCTAAA+AGG | - | chr5_1:19141268-19141287 | None:intergenic | 35.0% | |
| GATGACTTATTCTGATTGTG+AGG | + | chr5_1:19141478-19141497 | Msa0721990:CDS | 35.0% | |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5_1:19141794-19141813 | Msa0721990:CDS | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5_1:19141835-19141854 | Msa0721990:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5_1:19141960-19141979 | Msa0721990:intron | 35.0% | |
| ! | TTTTTACCTCAGCTTCATGA+GGG | - | chr5_1:19142112-19142131 | None:intergenic | 35.0% |
| TGTATGTTAGCAACTCCTAT+AGG | + | chr5_1:19142648-19142667 | Msa0721990:intron | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | + | chr5_1:19142770-19142789 | Msa0721990:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr5_1:19142776-19142795 | None:intergenic | 35.0% |
| CGGCTATAGATTACAAAAAC+AGG | - | chr5_1:19142909-19142928 | None:intergenic | 35.0% | |
| GTTCTTGCAATTGTCAAGTA+CGG | - | chr5_1:19142929-19142948 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5_1:19143009-19143028 | None:intergenic | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5_1:19143007-19143026 | Msa0721990:CDS | 35.0% | |
| GAGATGCTAAAAGGTGGAAA+GGG | - | chr5_1:19141259-19141278 | None:intergenic | 40.0% | |
| AGAGATGCTAAAAGGTGGAA+AGG | - | chr5_1:19141260-19141279 | None:intergenic | 40.0% | |
| GAGTAAGAGATGCTAAAAGG+TGG | - | chr5_1:19141265-19141284 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_1:19141271-19141290 | Msa0721990:CDS | 40.0% | |
| !! | GTCTTGTTTGCATCTTCATC+TGG | - | chr5_1:19141431-19141450 | None:intergenic | 40.0% |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_1:19141660-19141679 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_1:19142067-19142086 | Msa0721990:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_1:19142073-19142092 | None:intergenic | 40.0% | |
| ! | GTTTTTACCTCAGCTTCATG+AGG | - | chr5_1:19142113-19142132 | None:intergenic | 40.0% |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_1:19142321-19142340 | Msa0721990:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_1:19142332-19142351 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_1:19142361-19142380 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_1:19142378-19142397 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_1:19142384-19142403 | Msa0721990:intron | 40.0% | |
| TCTGCAAGAACTTTCCAGTT+TGG | - | chr5_1:19142401-19142420 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | chr5_1:19142659-19142678 | Msa0721990:intron | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr5_1:19142666-19142685 | None:intergenic | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr5_1:19142769-19142788 | Msa0721990:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr5_1:19142777-19142796 | None:intergenic | 40.0% |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_1:19142945-19142964 | Msa0721990:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_1:19142964-19142983 | Msa0721990:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_1:19142993-19143012 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_1:19143002-19143021 | Msa0721990:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_1:19143019-19143038 | None:intergenic | 40.0% | |
| GAGATGCTAAAAGGTGGAAA+GGG | - | chr5_1:19141259-19141278 | None:intergenic | 40.0% | |
| AGAGATGCTAAAAGGTGGAA+AGG | - | chr5_1:19141260-19141279 | None:intergenic | 40.0% | |
| GAGTAAGAGATGCTAAAAGG+TGG | - | chr5_1:19141265-19141284 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5_1:19141271-19141290 | Msa0721990:CDS | 40.0% | |
| !! | GTCTTGTTTGCATCTTCATC+TGG | - | chr5_1:19141431-19141450 | None:intergenic | 40.0% |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5_1:19141660-19141679 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5_1:19142067-19142086 | Msa0721990:CDS | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5_1:19142073-19142092 | None:intergenic | 40.0% | |
| ! | GTTTTTACCTCAGCTTCATG+AGG | - | chr5_1:19142113-19142132 | None:intergenic | 40.0% |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5_1:19142321-19142340 | Msa0721990:intron | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5_1:19142332-19142351 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5_1:19142361-19142380 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5_1:19142378-19142397 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5_1:19142384-19142403 | Msa0721990:intron | 40.0% | |
| TCTGCAAGAACTTTCCAGTT+TGG | - | chr5_1:19142401-19142420 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | chr5_1:19142659-19142678 | Msa0721990:intron | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr5_1:19142666-19142685 | None:intergenic | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr5_1:19142769-19142788 | Msa0721990:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr5_1:19142777-19142796 | None:intergenic | 40.0% |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5_1:19142945-19142964 | Msa0721990:intron | 40.0% |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5_1:19142964-19142983 | Msa0721990:intron | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5_1:19142993-19143012 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5_1:19143002-19143021 | Msa0721990:CDS | 40.0% | |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5_1:19143019-19143038 | None:intergenic | 40.0% | |
| TCCATGCAGCAGTTTGACAA+TGG | + | chr5_1:19141166-19141185 | Msa0721990:CDS | 45.0% | |
| ACCATTGTCAAACTGCTGCA+TGG | - | chr5_1:19141170-19141189 | None:intergenic | 45.0% | |
| ATGCAGCAGTTTGACAATGG+TGG | + | chr5_1:19141169-19141188 | Msa0721990:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_1:19141185-19141204 | Msa0721990:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_1:19141639-19141658 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_1:19141803-19141822 | Msa0721990:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_1:19141809-19141828 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_1:19142036-19142055 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_1:19142037-19142056 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_1:19142038-19142057 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_1:19142259-19142278 | Msa0721990:intron | 45.0% | |
| GCAAGAACTTTCCAGTTTGG+TGG | - | chr5_1:19142398-19142417 | None:intergenic | 45.0% | |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_1:19142973-19142992 | Msa0721990:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_1:19142981-19143000 | Msa0721990:CDS | 45.0% | |
| TCCATGCAGCAGTTTGACAA+TGG | + | chr5_1:19141166-19141185 | Msa0721990:CDS | 45.0% | |
| ACCATTGTCAAACTGCTGCA+TGG | - | chr5_1:19141170-19141189 | None:intergenic | 45.0% | |
| ATGCAGCAGTTTGACAATGG+TGG | + | chr5_1:19141169-19141188 | Msa0721990:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5_1:19141185-19141204 | Msa0721990:CDS | 45.0% |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5_1:19141639-19141658 | None:intergenic | 45.0% | |
| AAACCCTGATATGGCTCACA+AGG | + | chr5_1:19141803-19141822 | Msa0721990:CDS | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5_1:19141809-19141828 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5_1:19142036-19142055 | None:intergenic | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5_1:19142037-19142056 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5_1:19142038-19142057 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5_1:19142259-19142278 | Msa0721990:intron | 45.0% | |
| GCAAGAACTTTCCAGTTTGG+TGG | - | chr5_1:19142398-19142417 | None:intergenic | 45.0% | |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5_1:19142973-19142992 | Msa0721990:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5_1:19142981-19143000 | Msa0721990:CDS | 45.0% | |
| !! | AATAATATAGTAAATAAATA+AGG | + | chr5_1:19142501-19142520 | Msa0721990:intron | 5.0% |
| !! | ATAATATAGTAAATAAATAA+GGG | + | chr5_1:19142502-19142521 | Msa0721990:intron | 5.0% |
| !! | AATAATATAGTAAATAAATA+AGG | + | chr5_1:19142501-19142520 | Msa0721990:intron | 5.0% |
| !! | ATAATATAGTAAATAAATAA+GGG | + | chr5_1:19142502-19142521 | Msa0721990:intron | 5.0% |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_1:19141810-19141829 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_1:19142035-19142054 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_1:19142085-19142104 | Msa0721990:CDS | 50.0% | |
| AGCTTCATGAGGGTCCACTT+GGG | - | chr5_1:19142102-19142121 | None:intergenic | 50.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5_1:19141810-19141829 | None:intergenic | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5_1:19142035-19142054 | None:intergenic | 50.0% |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5_1:19142085-19142104 | Msa0721990:CDS | 50.0% | |
| AGCTTCATGAGGGTCCACTT+GGG | - | chr5_1:19142102-19142121 | None:intergenic | 50.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_1:19142029-19142048 | Msa0721990:CDS | 55.0% | |
| CAGCTTCATGAGGGTCCACT+TGG | - | chr5_1:19142103-19142122 | None:intergenic | 55.0% | |
| AGTGGACCCTCATGAAGCTG+AGG | + | chr5_1:19142103-19142122 | Msa0721990:CDS | 55.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5_1:19142029-19142048 | Msa0721990:CDS | 55.0% | |
| CAGCTTCATGAGGGTCCACT+TGG | - | chr5_1:19142103-19142122 | None:intergenic | 55.0% | |
| AGTGGACCCTCATGAAGCTG+AGG | + | chr5_1:19142103-19142122 | Msa0721990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19140960 | 19143044 | 19140960 | ID=Msa0721990;Name=Msa0721990 |
| chr5_1 | mRNA | 19140960 | 19143044 | 19140960 | ID=Msa0721990-mRNA-1;Parent=Msa0721990;Name=Msa0721990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.66|0.42|1|0.83|0.85|7|0|217 |
| chr5_1 | exon | 19140960 | 19141040 | 19140960 | ID=Msa0721990-mRNA-1:exon:7157;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19141158 | 19141292 | 19141158 | ID=Msa0721990-mRNA-1:exon:7158;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19141410 | 19141539 | 19141410 | ID=Msa0721990-mRNA-1:exon:7159;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19141634 | 19141682 | 19141634 | ID=Msa0721990-mRNA-1:exon:7160;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19141776 | 19141851 | 19141776 | ID=Msa0721990-mRNA-1:exon:7161;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19142020 | 19142124 | 19142020 | ID=Msa0721990-mRNA-1:exon:7162;Parent=Msa0721990-mRNA-1 |
| chr5_1 | exon | 19142967 | 19143044 | 19142967 | ID=Msa0721990-mRNA-1:exon:7163;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19140960 | 19141040 | 19140960 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19141158 | 19141292 | 19141158 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19141410 | 19141539 | 19141410 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19141634 | 19141682 | 19141634 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19141776 | 19141851 | 19141776 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19142020 | 19142124 | 19142020 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| chr5_1 | CDS | 19142967 | 19143044 | 19142967 | ID=Msa0721990-mRNA-1:cds;Parent=Msa0721990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
