AlfalfaGEDB | Msa0843350

M. sativa cultivar zhongmu-4 / Msa0843350

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843350	XP_003613304.1	95.612	433	19	0	1	433	1	433	0.0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843350	sp\|B9HJR7\|XGAT1_POPTR	57.477	428	165	6	10	433	15	429	5.35e-176	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843350	G7K2T6	95.612	433	19	0	1	433	1	433	0.0	820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0806210	Msa0843350	0.838268	3.181375e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843350	MtrunA17_Chr5g0414051	95.612	433	19	0	1	433	1	433	0.0	820
Msa0843350	MtrunA17_Chr5g0414091	66.744	433	123	6	7	424	9	435	0.0	557
Msa0843350	MtrunA17_Chr8g0391481	67.663	368	114	3	58	421	7	373	0.0	533
Msa0843350	MtrunA17_Chr5g0414061	61.149	435	142	7	5	424	20	442	0.0	521
Msa0843350	MtrunA17_Chr5g0414041	61.298	447	150	6	1	433	7	444	0.0	518
Msa0843350	MtrunA17_Chr3g0140371	68.627	357	109	3	66	422	9	362	0.0	514
Msa0843350	MtrunA17_Chr7g0226991	66.106	357	119	2	67	422	49	404	1.04e-178	504
Msa0843350	MtrunA17_Chr5g0414081	72.000	200	55	1	223	422	3	201	5.54e-108	317
Msa0843350	MtrunA17_Chr8g0387921	39.614	414	230	11	19	420	14	419	4.33e-97	297
Msa0843350	MtrunA17_Chr6g0456691	38.480	421	230	12	14	421	16	420	1.12e-94	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843350	AT1G70230.1	48.077	416	183	10	23	423	17	414	8.36e-135	394
Msa0843350	AT4G23790.1	37.819	431	247	11	5	420	3	427	1.18e-93	289
Msa0843350	AT1G01430.1	40.106	379	205	11	54	420	79	447	5.30e-93	288
Msa0843350	AT4G01080.1	39.286	392	222	8	32	418	48	428	5.79e-93	288
Msa0843350	AT5G15890.1	39.578	379	208	11	47	421	162	523	7.82e-91	285
Msa0843350	AT4G11090.1	38.824	425	229	13	17	420	11	425	1.36e-89	278
Msa0843350	AT3G02440.1	39.665	358	200	9	75	426	127	474	7.95e-88	275
Msa0843350	AT3G02440.2	39.665	358	200	9	75	426	135	482	9.39e-88	276
Msa0843350	AT3G28150.1	36.870	377	210	10	60	422	50	412	7.60e-86	268
Msa0843350	AT5G15900.1	37.293	362	206	11	75	427	67	416	2.05e-81	257

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Find 124 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTGAACCTTATGGAA+AGG	0.548583	5_4:+21003713	Msa0843350:CDS
AAAGAGAAATCCATGAATTA+AGG	0.326553	5_4:-21001275	None:intergenic
AAAGGATTCATATAAGCACC+TGG	0.621291	5_4:-21003888	None:intergenic
AAAGTGTGACACAAGGACCT+AGG	0.643102	5_4:-21001555	None:intergenic
AAAGTGTTTGGTTCAAACCT+TGG	0.467308	5_4:-21003135	None:intergenic
AAATGGAAAGCGAGATTAGA+AGG	0.400157	5_4:+21003754	Msa0843350:CDS
AAATGTATTGTATTAAAATT+TGG	0.148603	5_4:-21003375	None:intergenic
AAATTGGCGAAGGATATGGA+TGG	0.663011	5_4:+21003414	Msa0843350:CDS
AACATACCTGAATAATGAGG+AGG	0.659116	5_4:-21002101	None:intergenic
AACATGATCTTGGTGTGATG+AGG	0.658091	5_4:-21001477	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTAAGGATACAAGAGA+TGG	-	chr5_4:21001265-21001284	None:intergenic	30.0%
TCTCTTGTATCCTTAATTCA+TGG	+	chr5_4:21001265-21001284	Msa0843350:five_prime_UTR	30.0%
ATTTAATTGAGGAAACTCAC+CGG	-	chr5_4:21001509-21001528	None:intergenic	30.0%
TGCACACTTATCTATATTTG+AGG	-	chr5_4:21001714-21001733	None:intergenic	30.0%
CTATTCTATTCTATTCCACT+TGG	+	chr5_4:21001835-21001854	Msa0843350:five_prime_UTR	30.0%
ATGAAGTGTATATGGAAGAA+GGG	-	chr5_4:21001973-21001992	None:intergenic	30.0%
AGTAGAAGATGAAGTGTATA+TGG	-	chr5_4:21001981-21002000	None:intergenic	30.0%
TACCTTACGATAAATTTGGA+GGG	-	chr5_4:21002526-21002545	None:intergenic	30.0%
ATACCTTACGATAAATTTGG+AGG	-	chr5_4:21002527-21002546	None:intergenic	30.0%
TTAAAAGTGAGAAGAGCTTT+CGG	-	chr5_4:21002735-21002754	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	21001249	21004180	21001249	ID=Msa0843350;Name=Msa0843350
chr5_4	mRNA	21001249	21004180	21001249	ID=Msa0843350-mRNA-1;Parent=Msa0843350;Name=Msa0843350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=678\|1\|1\|1\|0.5\|0.33\|3\|93\|433
chr5_4	exon	21001249	21002116	21001249	ID=Msa0843350-mRNA-1:exon:8693;Parent=Msa0843350-mRNA-1
chr5_4	exon	21002944	21004072	21002944	ID=Msa0843350-mRNA-1:exon:8694;Parent=Msa0843350-mRNA-1
chr5_4	exon	21004105	21004180	21004105	ID=Msa0843350-mRNA-1:exon:8695;Parent=Msa0843350-mRNA-1
chr5_4	five_prime_UTR	21001249	21001926	21001249	ID=Msa0843350-mRNA-1:five_prime_utr;Parent=Msa0843350-mRNA-1
chr5_4	CDS	21001927	21002116	21001927	ID=Msa0843350-mRNA-1:cds;Parent=Msa0843350-mRNA-1
chr5_4	CDS	21002944	21004055	21002944	ID=Msa0843350-mRNA-1:cds;Parent=Msa0843350-mRNA-1
chr5_4	three_prime_UTR	21004056	21004072	21004056	ID=Msa0843350-mRNA-1:three_prime_utr;Parent=Msa0843350-mRNA-1
chr5_4	three_prime_UTR	21004105	21004180	21004105	ID=Msa0843350-mRNA-1:three_prime_utr;Parent=Msa0843350-mRNA-1

Gene Sequence

>Msa0843350

ATGAAAAGTACAATGAAAGATGATTCAATTTCACTCTCTAAGACCCTTCTTCCATATACACTTCATCTTCTACTTCTCATAGCTCTCTTACCCATTGTTCTTCTTTATTTATACTTTTACCCTTTGTCTCTTACAAAATCTCAAACTCAGCTTCATCATGCAACTATTTCTACTCCTCCTCATTATTCAGTAAATGACAAACACAAAATTGATGAGCATCCATGTGACTACTTCAATGGAAAATGGATTCATGACAAAAAAGGTCCTTTATACAATGGAACAACATGTGGAACAATCAAAGAAGGACAAAATTGTATCACCAATGGGAGACCAGACTCAAACTACCTTTACTATAGATGGAAACCAAATGAGTGCAATCTTCCAAGGTTTGAACCAAACACTTTTCTCCAACTAAGCAAAAACAAACACATATCTTTTGTTGGTGATTCTTTAGCTAGAAACCAATTTGAGTCTCTTCTTTGCATGTTATCAATTGTTTCAAAACCTAAACCTGTCCACCATAAAGGTTCACATTGGTGGCATTTTTCTTCTCATAATGCAACATTATCCGTGTATTGGTCGCCATTTCTTGTGCAAGGCGATGAAAGATCAAAATCCGGGCCAAATTTTAATACAATACATTTGGATCGCGTTAATGAAAAATTGGCGAAGGATATGGATGGAATCGACTTGATTGTGTTATCATTTGGAAATTGGTTTATTAATGTTCCTTCAGTTTATTATGAGAATGGTTTGGTTTTAGGATGCTTAAATTGTTCCGCTTTCGGTCTTAATTATACTGATATTGGTTTTTATGTTCCATTAAGAAAGGCTTTAAGGACTTGTCTTAATAGCATAATTGAGAGGAAAGTTGCTAAAGGGAATGGAATTGGTGTAATTGTGAAAACTTTTTCACCTTCTCATTTTGATGGTGATTGGGATAAGGCTGGAACATGTTCAAAGACTGAACCTTATGGAAAGGGTGAGAAGAAAATTGGAAAAATGGAAAGCGAGATTAGAAGGATTGAGATTGAAGAAGTGGAAAATGCTAAGAAAAAAGCAAATGAACTTGGAGGGATTAGATTTGAGGTATTGGATGTAACTAAATTGGCATTGTTGAGACCAGATGGTCATCCAGGTGCTTATATGAATCCTTTTCCGTTAGCTAACGGTGTTCCGAAGTATGTGCAAAATGATTGTGTTCATTGGTGTTTGCCTGGGCCTATAGATACTTGGAATGAGATTTTTCTAGAGATGATGAAGAAGTGGGATTGGAAGGGACAGCCAAGGAGTGAAGAGTGA

Protein sequence

>Msa0843350

MKSTMKDDSISLSKTLLPYTLHLLLLIALLPIVLLYLYFYPLSLTKSQTQLHHATISTPPHYSVNDKHKIDEHPCDYFNGKWIHDKKGPLYNGTTCGTIKEGQNCITNGRPDSNYLYYRWKPNECNLPRFEPNTFLQLSKNKHISFVGDSLARNQFESLLCMLSIVSKPKPVHHKGSHWWHFSSHNATLSVYWSPFLVQGDERSKSGPNFNTIHLDRVNEKLAKDMDGIDLIVLSFGNWFINVPSVYYENGLVLGCLNCSAFGLNYTDIGFYVPLRKALRTCLNSIIERKVAKGNGIGVIVKTFSPSHFDGDWDKAGTCSKTEPYGKGEKKIGKMESEIRRIEIEEVENAKKKANELGGIRFEVLDVTKLALLRPDGHPGAYMNPFPLANGVPKYVQNDCVHWCLPGPIDTWNEIFLEMMKKWDWKGQPRSEE*