Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843910 | AES95423.2 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843910 | sp|P52420|PUR2_ARATH | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843910 | G7K3Z1 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0764270 | Msa0843910 | 0.805380 | 1.372957e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843910 | MtrunA17_Chr5g0407981 | 90.458 | 524 | 43 | 2 | 1 | 524 | 1 | 517 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843910 | AT1G09830.1 | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
Find 173 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATGAGTAGAGGAATTT+TGG | 0.135958 | 5_4:-21824954 | None:intergenic |
| TGGATGGGTCTGCTTCTTTC+GGG | 0.177813 | 5_4:-21824555 | None:intergenic |
| TGTCAATGTTAGATTCTATT+TGG | 0.213734 | 5_4:-21828282 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_4:+21827393 | Msa0843910:CDS |
| ACACCGACTTTATCATTAAT+AGG | 0.237266 | 5_4:-21828019 | None:intergenic |
| TTGGATGGGTCTGCTTCTTT+CGG | 0.238255 | 5_4:-21824556 | None:intergenic |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_4:-21827873 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_4:+21826422 | Msa0843910:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_4:-21824524 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_4:+21826662 | Msa0843910:CDS |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_4:-21825387 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_4:-21826584 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_4:-21827853 | None:intergenic |
| TGAAGTTCCTCGGTTAAAAT+AGG | 0.288190 | 5_4:-21826620 | None:intergenic |
| TACAATTTAATCAGTCATTC+TGG | 0.291254 | 5_4:+21828168 | Msa0843910:three_prime_UTR |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_4:+21825421 | Msa0843910:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_4:+21825202 | Msa0843910:CDS |
| AAGTCGGTGTTAATGATAAA+AGG | 0.324984 | 5_4:+21828032 | Msa0843910:three_prime_UTR |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_4:+21827431 | Msa0843910:CDS |
| CACCGACTTTATCATTAATA+GGG | 0.330874 | 5_4:-21828018 | None:intergenic |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_4:+21827593 | Msa0843910:CDS |
| GAATCGAAAACTTACTTGAT+TGG | 0.334527 | 5_4:-21824654 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_4:+21825195 | Msa0843910:intron |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_4:+21827810 | Msa0843910:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_4:-21827551 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_4:-21826553 | None:intergenic |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.372123 | 5_4:-21824983 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.375330 | 5_4:+21827710 | Msa0843910:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_4:+21825463 | Msa0843910:CDS |
| GCAGAGGCTGCTGCTCTAGA+AGG | 0.395754 | 5_4:+21825493 | Msa0843910:CDS |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_4:-21825421 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_4:-21827526 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_4:-21824523 | None:intergenic |
| TTTGACACATGTTGTTTATG+AGG | 0.404746 | 5_4:-21827746 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_4:+21827394 | Msa0843910:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_4:-21826332 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_4:+21825444 | Msa0843910:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_4:+21825448 | Msa0843910:CDS |
| CTGGCGATTCCTGCATTGCC+AGG | 0.411607 | 5_4:-21825298 | None:intergenic |
| TCTGCTTCTTTCGGGGTTTG+AGG | 0.413157 | 5_4:-21824547 | None:intergenic |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_4:+21825182 | Msa0843910:intron |
| CATCAAGTTTCTAACCCGTC+TGG | 0.418627 | 5_4:+21824910 | Msa0843910:CDS |
| CAGACGGGTTAGAAACTTGA+TGG | 0.420090 | 5_4:-21824909 | None:intergenic |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_4:+21826767 | Msa0843910:CDS |
| TCATTCTGGTTTGTTTGTAT+CGG | 0.424815 | 5_4:+21828182 | Msa0843910:three_prime_UTR |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_4:+21827448 | Msa0843910:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_4:-21825029 | None:intergenic |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_4:+21827367 | Msa0843910:CDS |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_4:+21827351 | Msa0843910:intron |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_4:+21826350 | Msa0843910:CDS |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_4:+21826692 | Msa0843910:CDS |
| TTCTGTGCTCCTGGCAATGC+AGG | 0.456673 | 5_4:+21825289 | Msa0843910:CDS |
| AGTTCCCTTCTCATATGATC+CGG | 0.457216 | 5_4:-21827492 | None:intergenic |
| ATTGTGACAAGGTCAGTAAT+AGG | 0.458217 | 5_4:+21827779 | Msa0843910:three_prime_UTR |
| TACTATAGATTGAAGTTCCT+CGG | 0.460702 | 5_4:-21826630 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_4:+21826344 | Msa0843910:CDS |
| GAGCGGAAGGAAGGAGATGA+AGG | 0.469632 | 5_4:-21824609 | None:intergenic |
| GACTTTATCATTAATAGGGT+TGG | 0.475904 | 5_4:-21828014 | None:intergenic |
| TATTTACAAAGTGATCGAAA+TGG | 0.476766 | 5_4:-21828145 | None:intergenic |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_4:+21827454 | Msa0843910:CDS |
| GGAACGTGCGTGTGAGCGAT+TGG | 0.480052 | 5_4:-21824575 | None:intergenic |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_4:+21825211 | Msa0843910:CDS |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_4:-21827841 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_4:+21827355 | Msa0843910:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_4:+21826464 | Msa0843910:CDS |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_4:+21827418 | Msa0843910:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_4:+21827442 | Msa0843910:CDS |
| AAGACACGCGAGCGGAAGGA+AGG | 0.489163 | 5_4:-21824618 | None:intergenic |
| CGTGCGTGTGAGCGATTGGA+TGG | 0.490214 | 5_4:-21824571 | None:intergenic |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_4:-21826758 | None:intergenic |
| GAGTGACTGCGCAAGATCAA+AGG | 0.495132 | 5_4:-21824496 | None:intergenic |
| CACATGTTGTTTATGAGGAA+GGG | 0.496285 | 5_4:-21827741 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_4:+21824856 | Msa0843910:CDS |
| CAATGTTAGATTCTATTTGG+TGG | 0.501042 | 5_4:-21828279 | None:intergenic |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_4:+21826337 | Msa0843910:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_4:+21827623 | Msa0843910:CDS |
| GAAGAAGACACGCGAGCGGA+AGG | 0.504767 | 5_4:-21824622 | None:intergenic |
| GTTGAGAATGTGAACTGGCC+AGG | 0.508310 | 5_4:+21827686 | Msa0843910:CDS |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_4:-21827449 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_4:+21826305 | Msa0843910:CDS |
| ACACATGTTGTTTATGAGGA+AGG | 0.509670 | 5_4:-21827742 | None:intergenic |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_4:-21824866 | None:intergenic |
| AGTGACTGCGCAAGATCAAA+GGG | 0.513803 | 5_4:-21824495 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_4:+21826572 | Msa0843910:CDS |
| AATGCAGGAATCGCCAGCTC+AGG | 0.518585 | 5_4:+21825304 | Msa0843910:CDS |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_4:+21826784 | Msa0843910:CDS |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_4:-21825317 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_4:-21826293 | None:intergenic |
| GATACTGTATTCTGTGCTCC+TGG | 0.527307 | 5_4:+21825280 | Msa0843910:CDS |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_4:+21827395 | Msa0843910:CDS |
| ATCAAGTTTCTAACCCGTCT+GGG | 0.530266 | 5_4:+21824911 | Msa0843910:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_4:+21826580 | Msa0843910:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_4:-21826794 | None:intergenic |
| TCCTCGGTTAAAATAGGAGC+GGG | 0.532872 | 5_4:-21826614 | None:intergenic |
| AGTGATTTCTGAACCCAGAC+GGG | 0.536927 | 5_4:-21824924 | None:intergenic |
| GGAGTGGGACTAGTTGTTGT+GGG | 0.537068 | 5_4:+21825397 | Msa0843910:CDS |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_4:-21826384 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_4:+21827714 | Msa0843910:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_4:-21826292 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.543780 | 5_4:+21826634 | Msa0843910:CDS |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_4:+21826560 | Msa0843910:CDS |
| ATGAAGTGTTATTCTCGCAA+TGG | 0.545347 | 5_4:+21828230 | Msa0843910:three_prime_UTR |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_4:+21827622 | Msa0843910:CDS |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_4:+21826581 | Msa0843910:CDS |
| TCATAAACAACATGTGTCAA+AGG | 0.551342 | 5_4:+21827748 | Msa0843910:CDS |
| AGCACAGAATACAGTATCAC+AGG | 0.551987 | 5_4:-21825275 | None:intergenic |
| TTGAGAATGTGAACTGGCCA+GGG | 0.555410 | 5_4:+21827687 | Msa0843910:CDS |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_4:-21826378 | None:intergenic |
| TGTTATTTAAGAAGATCTCA+AGG | 0.561573 | 5_4:-21828073 | None:intergenic |
| AGAGCAGCAGCCTCTGCAGA+TGG | 0.563220 | 5_4:-21825487 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_4:-21826533 | None:intergenic |
| AAGGAAGATTTATTGCAACT+GGG | 0.569664 | 5_4:+21827594 | Msa0843910:CDS |
| GTTCCCTTCTCATATGATCC+GGG | 0.573231 | 5_4:-21827491 | None:intergenic |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_4:+21825343 | Msa0843910:CDS |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_4:+21827436 | Msa0843910:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_4:+21825549 | Msa0843910:CDS |
| ATGGCAAGTAAAGGATATCC+CGG | 0.582009 | 5_4:+21827473 | Msa0843910:CDS |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_4:+21827464 | Msa0843910:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_4:+21827554 | Msa0843910:CDS |
| GGGAGTGGGACTAGTTGTTG+TGG | 0.587947 | 5_4:+21825396 | Msa0843910:CDS |
| AACCCTATTAATGATAAAGT+CGG | 0.589360 | 5_4:+21828016 | Msa0843910:three_prime_UTR |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_4:+21825245 | Msa0843910:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_4:-21825559 | None:intergenic |
| ATCGAAATGGATAAAACGAA+GGG | 0.592877 | 5_4:-21828132 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_4:+21826545 | Msa0843910:CDS |
| GAAACTTGATGGTTAATGCA+TGG | 0.594873 | 5_4:-21824898 | None:intergenic |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_4:+21827846 | Msa0843910:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_4:-21825429 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_4:-21825430 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.600765 | 5_4:+21827681 | Msa0843910:CDS |
| GGATGGGTCTGCTTCTTTCG+GGG | 0.602201 | 5_4:-21824554 | None:intergenic |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_4:+21826332 | Msa0843910:CDS |
| ATATCCCGGATCATATGAGA+AGG | 0.606039 | 5_4:+21827487 | Msa0843910:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_4:+21827575 | Msa0843910:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.611220 | 5_4:+21827596 | Msa0843910:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_4:-21827459 | None:intergenic |
| AAGTGATTTCTGAACCCAGA+CGG | 0.612744 | 5_4:-21824925 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_4:+21827423 | Msa0843910:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_4:+21826529 | Msa0843910:CDS |
| GTGCGTGTGAGCGATTGGAT+GGG | 0.617902 | 5_4:-21824570 | None:intergenic |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_4:-21825348 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_4:+21826677 | Msa0843910:CDS |
| GATCGAAATGGATAAAACGA+AGG | 0.619267 | 5_4:-21828133 | None:intergenic |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_4:-21827568 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_4:-21825428 | None:intergenic |
| GTTATTTAAGAAGATCTCAA+GGG | 0.627168 | 5_4:-21828072 | None:intergenic |
| AGGAAGATTTATTGCAACTG+GGG | 0.628668 | 5_4:+21827595 | Msa0843910:CDS |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_4:-21826297 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_4:+21826406 | Msa0843910:CDS |
| TTGCTGTAACCCCAAGAACA+CGG | 0.631724 | 5_4:-21827619 | None:intergenic |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_4:+21827845 | Msa0843910:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_4:+21827407 | Msa0843910:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_4:-21825475 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_4:+21826412 | Msa0843910:CDS |
| AGGTTGTCGTGTCATTGTTG+AGG | 0.640873 | 5_4:+21826451 | Msa0843910:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_4:+21826561 | Msa0843910:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_4:-21824863 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_4:+21826551 | Msa0843910:CDS |
| CGGAAGGAAGGAGATGAAGG+CGG | 0.655353 | 5_4:-21824606 | None:intergenic |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_4:+21825186 | Msa0843910:intron |
| TATCCCGGATCATATGAGAA+GGG | 0.670919 | 5_4:+21827488 | Msa0843910:CDS |
| TTCCTCGGTTAAAATAGGAG+CGG | 0.674048 | 5_4:-21826615 | None:intergenic |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_4:+21826413 | Msa0843910:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_4:+21827768 | Msa0843910:exon |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_4:+21827640 | Msa0843910:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_4:+21826575 | Msa0843910:CDS |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_4:+21826285 | Msa0843910:CDS |
| CCAGGCATAAAAGATGACCT+AGG | 0.693437 | 5_4:-21827981 | None:intergenic |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_4:-21827999 | None:intergenic |
| CAGAATACAGTATCACAGGA+CGG | 0.701522 | 5_4:-21825271 | None:intergenic |
| TCTTGAAGAAGACACGCGAG+CGG | 0.710565 | 5_4:-21824626 | None:intergenic |
| TGAGAATGTGAACTGGCCAG+GGG | 0.720727 | 5_4:+21827688 | Msa0843910:CDS |
| GAGAATGTGAACTGGCCAGG+GGG | 0.755542 | 5_4:+21827689 | Msa0843910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTCAAATTATTTAGTTA+AGG | + | chr5_4:21825444-21825463 | Msa0843910:CDS | 15.0% |
| !!! | TCTTAATATTTTTATTAGTC+AGG | + | chr5_4:21826081-21826100 | Msa0843910:intron | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | - | chr5_4:21827014-21827033 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | - | chr5_4:21827015-21827034 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | + | chr5_4:21827234-21827253 | Msa0843910:intron | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | + | chr5_4:21827235-21827254 | Msa0843910:intron | 15.0% |
| !! | ATGTATTTCAAAAATTAGTA+GGG | - | chr5_4:21828106-21828125 | None:intergenic | 15.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | - | chr5_4:21824751-21824770 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | - | chr5_4:21825619-21825638 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | - | chr5_4:21825620-21825639 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTAGTCAGGT+TGG | + | chr5_4:21826085-21826104 | Msa0843910:intron | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | - | chr5_4:21826761-21826780 | None:intergenic | 20.0% |
| !!! | ACAATGTATTTCAATTTTCA+CGG | - | chr5_4:21826860-21826879 | None:intergenic | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | + | chr5_4:21827236-21827255 | Msa0843910:intron | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | - | chr5_4:21827876-21827895 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | + | chr5_4:21827901-21827920 | Msa0843910:three_prime_UTR | 20.0% |
| !! | TGTATTTCAAAAATTAGTAG+GGG | - | chr5_4:21828105-21828124 | None:intergenic | 20.0% |
| !! | GATGTATTTCAAAAATTAGT+AGG | - | chr5_4:21828107-21828126 | None:intergenic | 20.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | - | chr5_4:21824801-21824820 | None:intergenic | 25.0% |
| !! | ATAAATGAGTAGAGGAATTT+TGG | - | chr5_4:21824957-21824976 | None:intergenic | 25.0% |
| !! | GGTTTTTAATAAATGAGTAG+AGG | - | chr5_4:21824965-21824984 | None:intergenic | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | - | chr5_4:21825032-21825051 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | + | chr5_4:21825448-21825467 | Msa0843910:CDS | 25.0% |
| !! | CTAGTACTGAACAAAATTAA+GGG | - | chr5_4:21825697-21825716 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | - | chr5_4:21825722-21825741 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | + | chr5_4:21825751-21825770 | Msa0843910:intron | 25.0% |
| !!! | AGTTTTAATTGAACCTTGTA+GGG | - | chr5_4:21825997-21826016 | None:intergenic | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | - | chr5_4:21826161-21826180 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | - | chr5_4:21826162-21826181 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTAAA+TGG | + | chr5_4:21826168-21826187 | Msa0843910:intron | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | - | chr5_4:21826242-21826261 | None:intergenic | 25.0% |
| !! | GTTAAAGTCTAGAACTTATA+AGG | + | chr5_4:21826878-21826897 | Msa0843910:intron | 25.0% |
| ! | CTATAGTTATCATATATGCA+TGG | + | chr5_4:21826929-21826948 | Msa0843910:intron | 25.0% |
| !!! | TTGTTCACTTTTCTTTGTTT+TGG | + | chr5_4:21827067-21827086 | Msa0843910:intron | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | - | chr5_4:21827224-21827243 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | + | chr5_4:21827337-21827356 | Msa0843910:intron | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | + | chr5_4:21827810-21827829 | Msa0843910:three_prime_UTR | 25.0% |
| ! | AACCCTATTAATGATAAAGT+CGG | + | chr5_4:21828016-21828035 | Msa0843910:three_prime_UTR | 25.0% |
| ! | GTTATTTAAGAAGATCTCAA+GGG | - | chr5_4:21828075-21828094 | None:intergenic | 25.0% |
| !! | TGTTATTTAAGAAGATCTCA+AGG | - | chr5_4:21828076-21828095 | None:intergenic | 25.0% |
| ! | TATTTACAAAGTGATCGAAA+TGG | - | chr5_4:21828148-21828167 | None:intergenic | 25.0% |
| ! | TACAATTTAATCAGTCATTC+TGG | + | chr5_4:21828168-21828187 | Msa0843910:three_prime_UTR | 25.0% |
| ! | TGTCAATGTTAGATTCTATT+TGG | - | chr5_4:21828285-21828304 | None:intergenic | 25.0% |
| GAATCGAAAACTTACTTGAT+TGG | - | chr5_4:21824657-21824676 | None:intergenic | 30.0% | |
| TAGAAAGCGAAAAAGGATTA+AGG | - | chr5_4:21824744-21824763 | None:intergenic | 30.0% | |
| !!! | TGTGTGTGTAATTTTGAAAC+AGG | + | chr5_4:21824823-21824842 | Msa0843910:intron | 30.0% |
| ATGAGTGAAGCTTAAATTCA+AGG | - | chr5_4:21824986-21825005 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | + | chr5_4:21825186-21825205 | Msa0843910:intron | 30.0% | |
| ! | CCTAGTACTGAACAAAATTA+AGG | - | chr5_4:21825698-21825717 | None:intergenic | 30.0% |
| ! | CCTTAATTTTGTTCAGTACT+AGG | + | chr5_4:21825695-21825714 | Msa0843910:intron | 30.0% |
| AATCACTTGCAAGACTATTT+GGG | - | chr5_4:21825935-21825954 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | - | chr5_4:21825936-21825955 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | - | chr5_4:21825998-21826017 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | + | chr5_4:21826238-21826257 | Msa0843910:intron | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | + | chr5_4:21826305-21826324 | Msa0843910:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | + | chr5_4:21826464-21826483 | Msa0843910:CDS | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | - | chr5_4:21826498-21826517 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | + | chr5_4:21826497-21826516 | Msa0843910:CDS | 30.0% |
| TACTATAGATTGAAGTTCCT+CGG | - | chr5_4:21826633-21826652 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | + | chr5_4:21826634-21826653 | Msa0843910:CDS | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | + | chr5_4:21826662-21826681 | Msa0843910:CDS | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | + | chr5_4:21826731-21826750 | Msa0843910:CDS | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | + | chr5_4:21826767-21826786 | Msa0843910:CDS | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | - | chr5_4:21826805-21826824 | None:intergenic | 30.0% | |
| TCGATGACACAAATTGTATT+AGG | + | chr5_4:21826903-21826922 | Msa0843910:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | + | chr5_4:21827173-21827192 | Msa0843910:intron | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | - | chr5_4:21827342-21827361 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | + | chr5_4:21827346-21827365 | Msa0843910:intron | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | + | chr5_4:21827594-21827613 | Msa0843910:CDS | 30.0% | |
| ! | TTTGACACATGTTGTTTATG+AGG | - | chr5_4:21827749-21827768 | None:intergenic | 30.0% |
| TCATAAACAACATGTGTCAA+AGG | + | chr5_4:21827748-21827767 | Msa0843910:CDS | 30.0% | |
| GACTTTATCATTAATAGGGT+TGG | - | chr5_4:21828017-21828036 | None:intergenic | 30.0% | |
| !! | CACCGACTTTATCATTAATA+GGG | - | chr5_4:21828021-21828040 | None:intergenic | 30.0% |
| !! | ACACCGACTTTATCATTAAT+AGG | - | chr5_4:21828022-21828041 | None:intergenic | 30.0% |
| !! | AAGTCGGTGTTAATGATAAA+AGG | + | chr5_4:21828032-21828051 | Msa0843910:three_prime_UTR | 30.0% |
| ATCGAAATGGATAAAACGAA+GGG | - | chr5_4:21828135-21828154 | None:intergenic | 30.0% | |
| !! | TCATTCTGGTTTGTTTGTAT+CGG | + | chr5_4:21828182-21828201 | Msa0843910:three_prime_UTR | 30.0% |
| CAATGTTAGATTCTATTTGG+TGG | - | chr5_4:21828282-21828301 | None:intergenic | 30.0% | |
| TGAATACGTGAACTGCTTAT+GGG | - | chr5_4:21824526-21824545 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | - | chr5_4:21824527-21824546 | None:intergenic | 35.0% | |
| GCGAAAAAGGATTAAGGTTT+AGG | - | chr5_4:21824738-21824757 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | - | chr5_4:21824869-21824888 | None:intergenic | 35.0% | |
| ! | GAAACTTGATGGTTAATGCA+TGG | - | chr5_4:21824901-21824920 | None:intergenic | 35.0% |
| GTGCATATTCCTAAGAAGAA+AGG | + | chr5_4:21825182-21825201 | Msa0843910:intron | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | - | chr5_4:21825194-21825213 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | + | chr5_4:21825549-21825568 | Msa0843910:CDS | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | + | chr5_4:21825608-21825627 | Msa0843910:intron | 35.0% |
| !! | GTTGTTTTCATAAGCCATCT+TGG | + | chr5_4:21825845-21825864 | Msa0843910:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | - | chr5_4:21825862-21825881 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | + | chr5_4:21826015-21826034 | Msa0843910:intron | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | - | chr5_4:21826207-21826226 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | - | chr5_4:21826230-21826249 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | - | chr5_4:21826231-21826250 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | - | chr5_4:21826300-21826319 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | - | chr5_4:21826387-21826406 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | + | chr5_4:21826406-21826425 | Msa0843910:CDS | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | + | chr5_4:21826412-21826431 | Msa0843910:CDS | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | + | chr5_4:21826413-21826432 | Msa0843910:CDS | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | + | chr5_4:21826490-21826509 | Msa0843910:CDS | 35.0% |
| TGAAGTTCCTCGGTTAAAAT+AGG | - | chr5_4:21826623-21826642 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | + | chr5_4:21826707-21826726 | Msa0843910:CDS | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | + | chr5_4:21826708-21826727 | Msa0843910:CDS | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | + | chr5_4:21826957-21826976 | Msa0843910:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | - | chr5_4:21827149-21827168 | None:intergenic | 35.0% |
| ATGTGATCATCCGTTATCAA+AGG | - | chr5_4:21827269-21827288 | None:intergenic | 35.0% | |
| GCATGGAATATCTTGATATC+TGG | - | chr5_4:21827554-21827573 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | + | chr5_4:21827554-21827573 | Msa0843910:CDS | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | + | chr5_4:21827593-21827612 | Msa0843910:CDS | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | + | chr5_4:21827595-21827614 | Msa0843910:CDS | 35.0% | |
| ! | CACATGTTGTTTATGAGGAA+GGG | - | chr5_4:21827744-21827763 | None:intergenic | 35.0% |
| ! | ACACATGTTGTTTATGAGGA+AGG | - | chr5_4:21827745-21827764 | None:intergenic | 35.0% |
| AGGTGTAAACTATTGTGACA+AGG | + | chr5_4:21827768-21827787 | Msa0843910:exon | 35.0% | |
| ATTGTGACAAGGTCAGTAAT+AGG | + | chr5_4:21827779-21827798 | Msa0843910:three_prime_UTR | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | - | chr5_4:21827844-21827863 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | + | chr5_4:21827846-21827865 | Msa0843910:three_prime_UTR | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | - | chr5_4:21827856-21827875 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | + | chr5_4:21827964-21827983 | Msa0843910:three_prime_UTR | 35.0% | |
| GATCGAAATGGATAAAACGA+AGG | - | chr5_4:21828136-21828155 | None:intergenic | 35.0% | |
| ! | ATGAAGTGTTATTCTCGCAA+TGG | + | chr5_4:21828230-21828249 | Msa0843910:three_prime_UTR | 35.0% |
| AGAAGTTCCAACATTGAAGG+TGG | - | chr5_4:21824866-21824885 | None:intergenic | 40.0% | |
| ATCAAGTTTCTAACCCGTCT+GGG | + | chr5_4:21824911-21824930 | Msa0843910:CDS | 40.0% | |
| AAGTGATTTCTGAACCCAGA+CGG | - | chr5_4:21824928-21824947 | None:intergenic | 40.0% | |
| AGAAGAAAGGATGGTTGTTC+TGG | + | chr5_4:21825195-21825214 | Msa0843910:intron | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | + | chr5_4:21825202-21825221 | Msa0843910:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | + | chr5_4:21825211-21825230 | Msa0843910:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | + | chr5_4:21825245-21825264 | Msa0843910:CDS | 40.0% |
| CAGAATACAGTATCACAGGA+CGG | - | chr5_4:21825274-21825293 | None:intergenic | 40.0% | |
| AGCACAGAATACAGTATCAC+AGG | - | chr5_4:21825278-21825297 | None:intergenic | 40.0% | |
| TCAGACCTTGATGTTTGTGA+TGG | + | chr5_4:21825343-21825362 | Msa0843910:CDS | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | + | chr5_4:21825374-21825393 | Msa0843910:CDS | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | + | chr5_4:21825375-21825394 | Msa0843910:CDS | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | - | chr5_4:21825432-21825451 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | - | chr5_4:21825433-21825452 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | - | chr5_4:21825599-21825618 | None:intergenic | 40.0% | |
| TGTGATAAGTCGATCCAAAC+AGG | + | chr5_4:21825971-21825990 | Msa0843910:intron | 40.0% | |
| AGGGAAGAACACCATTTACA+TGG | - | chr5_4:21826182-21826201 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | - | chr5_4:21826201-21826220 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | - | chr5_4:21826202-21826221 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | - | chr5_4:21826211-21826230 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | + | chr5_4:21826210-21826229 | Msa0843910:intron | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | - | chr5_4:21826335-21826354 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | + | chr5_4:21826332-21826351 | Msa0843910:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | - | chr5_4:21826381-21826400 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | + | chr5_4:21826422-21826441 | Msa0843910:CDS | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | + | chr5_4:21826529-21826548 | Msa0843910:CDS | 40.0% | |
| TTCCTCGGTTAAAATAGGAG+CGG | - | chr5_4:21826618-21826637 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | - | chr5_4:21826674-21826693 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | + | chr5_4:21826677-21826696 | Msa0843910:CDS | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | + | chr5_4:21826940-21826959 | Msa0843910:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | + | chr5_4:21827215-21827234 | Msa0843910:intron | 40.0% | |
| GGGTGTGTAACCTTTGATAA+CGG | + | chr5_4:21827256-21827275 | Msa0843910:intron | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | + | chr5_4:21827351-21827370 | Msa0843910:intron | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | + | chr5_4:21827464-21827483 | Msa0843910:CDS | 40.0% |
| ATGGCAAGTAAAGGATATCC+CGG | + | chr5_4:21827473-21827492 | Msa0843910:CDS | 40.0% | |
| ATATCCCGGATCATATGAGA+AGG | + | chr5_4:21827487-21827506 | Msa0843910:CDS | 40.0% | |
| TATCCCGGATCATATGAGAA+GGG | + | chr5_4:21827488-21827507 | Msa0843910:CDS | 40.0% | |
| AGTTCCCTTCTCATATGATC+CGG | - | chr5_4:21827495-21827514 | None:intergenic | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | + | chr5_4:21827596-21827615 | Msa0843910:CDS | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | + | chr5_4:21827640-21827659 | Msa0843910:CDS | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | + | chr5_4:21827681-21827700 | Msa0843910:CDS | 40.0% | |
| GAGCATCTCCAATATAAGTG+AGG | + | chr5_4:21827845-21827864 | Msa0843910:three_prime_UTR | 40.0% | |
| ! | CTAGGTCATCTTTTATGCCT+GGG | + | chr5_4:21827982-21828001 | Msa0843910:three_prime_UTR | 40.0% |
| AGTGACTGCGCAAGATCAAA+GGG | - | chr5_4:21824498-21824517 | None:intergenic | 45.0% | |
| TTGGATGGGTCTGCTTCTTT+CGG | - | chr5_4:21824559-21824578 | None:intergenic | 45.0% | |
| ! | TCACACGCACGTTCCATTTT+TGG | + | chr5_4:21824583-21824602 | Msa0843910:five_prime_UTR | 45.0% |
| TCTTGCACCACCTTCAATGT+TGG | + | chr5_4:21824856-21824875 | Msa0843910:CDS | 45.0% | |
| !! | CAGACGGGTTAGAAACTTGA+TGG | - | chr5_4:21824912-21824931 | None:intergenic | 45.0% |
| CATCAAGTTTCTAACCCGTC+TGG | + | chr5_4:21824910-21824929 | Msa0843910:CDS | 45.0% | |
| AGTGATTTCTGAACCCAGAC+GGG | - | chr5_4:21824927-21824946 | None:intergenic | 45.0% | |
| GATACTGTATTCTGTGCTCC+TGG | + | chr5_4:21825280-21825299 | Msa0843910:CDS | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | - | chr5_4:21825351-21825370 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | + | chr5_4:21825368-21825387 | Msa0843910:CDS | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | + | chr5_4:21825376-21825395 | Msa0843910:CDS | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | - | chr5_4:21825431-21825450 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | + | chr5_4:21825463-21825482 | Msa0843910:CDS | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | - | chr5_4:21825478-21825497 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | - | chr5_4:21825562-21825581 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | - | chr5_4:21826295-21826314 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | - | chr5_4:21826296-21826315 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | + | chr5_4:21826337-21826356 | Msa0843910:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | + | chr5_4:21826431-21826450 | Msa0843910:CDS | 45.0% |
| ! | AGGTTGTCGTGTCATTGTTG+AGG | + | chr5_4:21826451-21826470 | Msa0843910:CDS | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | + | chr5_4:21826551-21826570 | Msa0843910:CDS | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | - | chr5_4:21826556-21826575 | None:intergenic | 45.0% | |
| TCCTCGGTTAAAATAGGAGC+GGG | - | chr5_4:21826617-21826636 | None:intergenic | 45.0% | |
| GCAGAAGGTCGTAAGTTTGT+TGG | + | chr5_4:21826692-21826711 | Msa0843910:CDS | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | + | chr5_4:21827418-21827437 | Msa0843910:CDS | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | - | chr5_4:21827462-21827481 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+GGG | - | chr5_4:21827494-21827513 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | - | chr5_4:21827529-21827548 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | - | chr5_4:21827571-21827590 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | + | chr5_4:21827575-21827594 | Msa0843910:CDS | 45.0% | |
| TTGCTGTAACCCCAAGAACA+CGG | - | chr5_4:21827622-21827641 | None:intergenic | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | + | chr5_4:21827622-21827641 | Msa0843910:CDS | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | + | chr5_4:21827623-21827642 | Msa0843910:CDS | 45.0% | |
| TTGAGAATGTGAACTGGCCA+GGG | + | chr5_4:21827687-21827706 | Msa0843910:CDS | 45.0% | |
| GGATTCTATCGTCGGGATAT+TGG | + | chr5_4:21827710-21827729 | Msa0843910:CDS | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | + | chr5_4:21827714-21827733 | Msa0843910:CDS | 45.0% | |
| CCAGGCATAAAAGATGACCT+AGG | - | chr5_4:21827984-21828003 | None:intergenic | 45.0% | |
| ! | CCTAGGTCATCTTTTATGCC+TGG | + | chr5_4:21827981-21828000 | Msa0843910:three_prime_UTR | 45.0% |
| GAGTGACTGCGCAAGATCAA+AGG | - | chr5_4:21824499-21824518 | None:intergenic | 50.0% | |
| TCTGCTTCTTTCGGGGTTTG+AGG | - | chr5_4:21824550-21824569 | None:intergenic | 50.0% | |
| TGGATGGGTCTGCTTCTTTC+GGG | - | chr5_4:21824558-21824577 | None:intergenic | 50.0% | |
| GAGATGAAGGCGGCCAAAAA+TGG | - | chr5_4:21824599-21824618 | None:intergenic | 50.0% | |
| TCTTGAAGAAGACACGCGAG+CGG | - | chr5_4:21824629-21824648 | None:intergenic | 50.0% | |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | + | chr5_4:21825381-21825400 | Msa0843910:CDS | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | + | chr5_4:21825382-21825401 | Msa0843910:CDS | 50.0% |
| !! | GGAGTGGGACTAGTTGTTGT+GGG | + | chr5_4:21825397-21825416 | Msa0843910:CDS | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | + | chr5_4:21825477-21825496 | Msa0843910:CDS | 50.0% |
| TGAACCTTGTAGGGCCTGTT+TGG | - | chr5_4:21825988-21826007 | None:intergenic | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | - | chr5_4:21826227-21826246 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | - | chr5_4:21826351-21826370 | None:intergenic | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | - | chr5_4:21826536-21826555 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | + | chr5_4:21826545-21826564 | Msa0843910:CDS | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | + | chr5_4:21826560-21826579 | Msa0843910:CDS | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | + | chr5_4:21826561-21826580 | Msa0843910:CDS | 50.0% |
| !!! | TCCCGCTCCTATTTTAACCG+AGG | + | chr5_4:21826613-21826632 | Msa0843910:CDS | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | + | chr5_4:21826784-21826803 | Msa0843910:CDS | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | - | chr5_4:21826797-21826816 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | + | chr5_4:21827355-21827374 | Msa0843910:intron | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | + | chr5_4:21827367-21827386 | Msa0843910:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | + | chr5_4:21827393-21827412 | Msa0843910:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | + | chr5_4:21827394-21827413 | Msa0843910:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | + | chr5_4:21827423-21827442 | Msa0843910:CDS | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | + | chr5_4:21827454-21827473 | Msa0843910:CDS | 50.0% | |
| GTTGAGAATGTGAACTGGCC+AGG | + | chr5_4:21827686-21827705 | Msa0843910:CDS | 50.0% | |
| TGAGAATGTGAACTGGCCAG+GGG | + | chr5_4:21827688-21827707 | Msa0843910:CDS | 50.0% | |
| ! | AGGGTTGGCATAGATAACCC+AGG | - | chr5_4:21828002-21828021 | None:intergenic | 50.0% |
| GGATGGGTCTGCTTCTTTCG+GGG | - | chr5_4:21824557-21824576 | None:intergenic | 55.0% | |
| GTGCGTGTGAGCGATTGGAT+GGG | - | chr5_4:21824573-21824592 | None:intergenic | 55.0% | |
| CGGAAGGAAGGAGATGAAGG+CGG | - | chr5_4:21824609-21824628 | None:intergenic | 55.0% | |
| GAGCGGAAGGAAGGAGATGA+AGG | - | chr5_4:21824612-21824631 | None:intergenic | 55.0% | |
| TTCTGTGCTCCTGGCAATGC+AGG | + | chr5_4:21825289-21825308 | Msa0843910:CDS | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | + | chr5_4:21825304-21825323 | Msa0843910:CDS | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | - | chr5_4:21825320-21825339 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | - | chr5_4:21825390-21825409 | None:intergenic | 55.0% | |
| !! | GGGAGTGGGACTAGTTGTTG+TGG | + | chr5_4:21825396-21825415 | Msa0843910:CDS | 55.0% |
| CGATCCAAACAGGCCCTACA+AGG | + | chr5_4:21825981-21826000 | Msa0843910:intron | 55.0% | |
| TTACAGACCCATCCGCAGCA+AGG | + | chr5_4:21826285-21826304 | Msa0843910:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | + | chr5_4:21826350-21826369 | Msa0843910:CDS | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | + | chr5_4:21826572-21826591 | Msa0843910:CDS | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | + | chr5_4:21826575-21826594 | Msa0843910:CDS | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | + | chr5_4:21826580-21826599 | Msa0843910:CDS | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | + | chr5_4:21826581-21826600 | Msa0843910:CDS | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | - | chr5_4:21826587-21826606 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | + | chr5_4:21827395-21827414 | Msa0843910:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | + | chr5_4:21827431-21827450 | Msa0843910:CDS | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | + | chr5_4:21827436-21827455 | Msa0843910:CDS | 55.0% |
| GAGAATGTGAACTGGCCAGG+GGG | + | chr5_4:21827689-21827708 | Msa0843910:CDS | 55.0% | |
| CGTGCGTGTGAGCGATTGGA+TGG | - | chr5_4:21824574-21824593 | None:intergenic | 60.0% | |
| GGAACGTGCGTGTGAGCGAT+TGG | - | chr5_4:21824578-21824597 | None:intergenic | 60.0% | |
| AAGACACGCGAGCGGAAGGA+AGG | - | chr5_4:21824621-21824640 | None:intergenic | 60.0% | |
| GAAGAAGACACGCGAGCGGA+AGG | - | chr5_4:21824625-21824644 | None:intergenic | 60.0% | |
| CTGGCGATTCCTGCATTGCC+AGG | - | chr5_4:21825301-21825320 | None:intergenic | 60.0% | |
| CCTGCAACAAGTGGGGCTTC+AGG | - | chr5_4:21825424-21825443 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | + | chr5_4:21825421-21825440 | Msa0843910:CDS | 60.0% |
| AGAGCAGCAGCCTCTGCAGA+TGG | - | chr5_4:21825490-21825509 | None:intergenic | 60.0% | |
| ! | GCAGAGGCTGCTGCTCTAGA+AGG | + | chr5_4:21825493-21825512 | Msa0843910:CDS | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | + | chr5_4:21826344-21826363 | Msa0843910:CDS | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | + | chr5_4:21827407-21827426 | Msa0843910:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | + | chr5_4:21827448-21827467 | Msa0843910:CDS | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | - | chr5_4:21827452-21827471 | None:intergenic | 60.0% | |
| CAACTGGGGGCCGTGTTCTT+GGG | + | chr5_4:21827609-21827628 | Msa0843910:CDS | 60.0% | |
| AACTGGGGGCCGTGTTCTTG+GGG | + | chr5_4:21827610-21827629 | Msa0843910:CDS | 60.0% | |
| GGCCAGGGGGATTCTATCGT+CGG | + | chr5_4:21827702-21827721 | Msa0843910:CDS | 60.0% | |
| GCCAGGGGGATTCTATCGTC+GGG | + | chr5_4:21827703-21827722 | Msa0843910:CDS | 60.0% | |
| TCCCGACGATAGAATCCCCC+TGG | - | chr5_4:21827707-21827726 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | + | chr5_4:21827442-21827461 | Msa0843910:CDS | 65.0% | |
| GCAACTGGGGGCCGTGTTCT+TGG | + | chr5_4:21827608-21827627 | Msa0843910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21824475 | 21828350 | 21824475 | ID=Msa0843910;Name=Msa0843910 |
| chr5_4 | mRNA | 21824475 | 21828350 | 21824475 | ID=Msa0843910-mRNA-1;Parent=Msa0843910;Name=Msa0843910-mRNA-1;_AED=0.35;_eAED=0.35;_QI=195|0.75|0.8|1|0.75|0.6|5|575|524 |
| chr5_4 | exon | 21824475 | 21824661 | 21824475 | ID=Msa0843910-mRNA-1:exon:8998;Parent=Msa0843910-mRNA-1 |
| chr5_4 | exon | 21824845 | 21825105 | 21824845 | ID=Msa0843910-mRNA-1:exon:8999;Parent=Msa0843910-mRNA-1 |
| chr5_4 | exon | 21825197 | 21825570 | 21825197 | ID=Msa0843910-mRNA-1:exon:9000;Parent=Msa0843910-mRNA-1 |
| chr5_4 | exon | 21826275 | 21826805 | 21826275 | ID=Msa0843910-mRNA-1:exon:9001;Parent=Msa0843910-mRNA-1 |
| chr5_4 | exon | 21827359 | 21828350 | 21827359 | ID=Msa0843910-mRNA-1:exon:9002;Parent=Msa0843910-mRNA-1 |
| chr5_4 | five_prime_UTR | 21824475 | 21824661 | 21824475 | ID=Msa0843910-mRNA-1:five_prime_utr;Parent=Msa0843910-mRNA-1 |
| chr5_4 | five_prime_UTR | 21824845 | 21824852 | 21824845 | ID=Msa0843910-mRNA-1:five_prime_utr;Parent=Msa0843910-mRNA-1 |
| chr5_4 | CDS | 21824853 | 21825105 | 21824853 | ID=Msa0843910-mRNA-1:cds;Parent=Msa0843910-mRNA-1 |
| chr5_4 | CDS | 21825197 | 21825570 | 21825197 | ID=Msa0843910-mRNA-1:cds;Parent=Msa0843910-mRNA-1 |
| chr5_4 | CDS | 21826275 | 21826805 | 21826275 | ID=Msa0843910-mRNA-1:cds;Parent=Msa0843910-mRNA-1 |
| chr5_4 | CDS | 21827359 | 21827775 | 21827359 | ID=Msa0843910-mRNA-1:cds;Parent=Msa0843910-mRNA-1 |
| chr5_4 | three_prime_UTR | 21827776 | 21828350 | 21827776 | ID=Msa0843910-mRNA-1:three_prime_utr;Parent=Msa0843910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
