Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764270 | sp|P52420|PUR2_ARATH | 75.258 | 485 | 114 | 2 | 42 | 523 | 49 | 530 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764270 | G7K3Z1 | 90.840 | 524 | 42 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723820 | Msa0764270 | 0.837657 | 4.567508e-57 | -8.615850e-47 |
| Msa0723830 | Msa0764270 | 0.811129 | 8.169725e-51 | -8.615850e-47 |
| Msa0764270 | Msa0803670 | 0.817804 | 2.726766e-52 | -8.615850e-47 |
| Msa0764270 | Msa0810710 | 0.886161 | 4.351389e-72 | -8.615850e-47 |
| Msa0764270 | Msa0843910 | 0.805380 | 1.372957e-49 | -8.615850e-47 |
| Msa0764270 | Msa1138870 | 0.806365 | 8.523254e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764270 | MtrunA17_Chr5g0407981 | 90.649 | 524 | 42 | 2 | 1 | 524 | 1 | 517 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764270 | AT1G09830.1 | 75.258 | 485 | 114 | 2 | 42 | 523 | 49 | 530 | 0.0 | 747 |
Find 176 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGGGTCTGCTTCTTTC+TGG | 0.053472 | 5_2:+23979229 | None:intergenic |
| ATAAATGAGTAGAGGAATTT+TGG | 0.135958 | 5_2:+23978858 | None:intergenic |
| GTATCTTTATGCTCTTTAAT+AGG | 0.196399 | 5_2:+23975686 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_2:-23976312 | Msa0764270:CDS |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_2:+23975832 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_2:-23977283 | Msa0764270:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_2:+23979260 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_2:-23977043 | Msa0764270:CDS |
| TGAAGTTCCTTGGTTAAAAT+AGG | 0.276295 | 5_2:+23977085 | None:intergenic |
| TATCTTTATGCTCTTTAATA+GGG | 0.278245 | 5_2:+23975687 | None:intergenic |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_2:+23978302 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_2:+23977121 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_2:+23975852 | None:intergenic |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_2:-23978268 | Msa0764270:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_2:-23978487 | Msa0764270:CDS |
| GGATGGGTCTGCTTCTTTCT+GGG | 0.319657 | 5_2:+23979230 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.321963 | 5_2:-23975995 | Msa0764270:CDS |
| ACTCATATTGTTACCTCAAA+AGG | 0.324367 | 5_2:-23975448 | Msa0764270:three_prime_UTR |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_2:-23976274 | Msa0764270:CDS |
| GATCATACTGTAAGTATATA+AGG | 0.328012 | 5_2:+23975421 | None:intergenic |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_2:-23976112 | Msa0764270:CDS |
| GTTTAGACTTGGGAGTCCTT+GGG | 0.335080 | 5_2:+23975377 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_2:-23978494 | Msa0764270:CDS |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_2:-23975895 | Msa0764270:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_2:+23976154 | None:intergenic |
| GGGTCTTTCTGCTCTTTAAT+AGG | 0.355953 | 5_2:+23975607 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_2:+23977152 | None:intergenic |
| TGTTTAGACTTGGGAGTCCT+TGG | 0.364294 | 5_2:+23975376 | None:intergenic |
| TTGAGAATGTGAACTGGCCT+GGG | 0.375216 | 5_2:-23976018 | Msa0764270:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_2:-23978226 | Msa0764270:CDS |
| TCTGCTTCTTTCTGGGTTTG+AGG | 0.391350 | 5_2:+23979237 | None:intergenic |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_2:+23978268 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_2:+23976179 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_2:+23979261 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_2:-23976311 | Msa0764270:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_2:+23977373 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_2:-23978245 | Msa0764270:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_2:-23978241 | Msa0764270:CDS |
| CTGGCGATTCCTGCATTGCC+AGG | 0.411607 | 5_2:+23978391 | None:intergenic |
| TACTATAGATTGAAGTTCCT+TGG | 0.413300 | 5_2:+23977075 | None:intergenic |
| GCAGAGGCTGCTGTTCTAGA+AGG | 0.415076 | 5_2:-23978196 | Msa0764270:CDS |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_2:-23978507 | Msa0764270:intron |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.417562 | 5_2:+23978829 | None:intergenic |
| AGAATGCTTACTTGAATTGT+TGG | 0.418543 | 5_2:+23978718 | None:intergenic |
| CATCAAGTTTCTAACCCGTC+TGG | 0.418627 | 5_2:-23978902 | Msa0764270:CDS |
| CAGACGGGTTAGAAACTTGA+TGG | 0.420090 | 5_2:+23978903 | None:intergenic |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_2:-23976938 | Msa0764270:CDS |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_2:-23976257 | Msa0764270:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_2:+23978783 | None:intergenic |
| GTTGAGAATGTGAACTGGCC+TGG | 0.433261 | 5_2:-23976019 | Msa0764270:CDS |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_2:-23976338 | Msa0764270:CDS |
| ATTGTGACAAGGTCAGTAAA+AGG | 0.435456 | 5_2:-23975926 | Msa0764270:three_prime_UTR |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_2:-23976354 | Msa0764270:intron |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_2:-23977355 | Msa0764270:CDS |
| TTCTGTGCTCCTGGCAATGC+AGG | 0.442136 | 5_2:-23978400 | Msa0764270:CDS |
| TTTATGCTCTTTAATAGGGT+TGG | 0.452611 | 5_2:+23975691 | None:intergenic |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_2:-23977013 | Msa0764270:CDS |
| AGTTCCCTTCTCATATGATC+CGG | 0.457216 | 5_2:+23976213 | None:intergenic |
| CTCATATTGTTACTTCTGTA+CGG | 0.457872 | 5_2:+23975586 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_2:-23977361 | Msa0764270:CDS |
| GAGCGGAAGGAAGGAGATGA+AGG | 0.469632 | 5_2:+23979175 | None:intergenic |
| CACATGTTGTTTCTGAGGAA+GGG | 0.474074 | 5_2:+23975964 | None:intergenic |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_2:-23976251 | Msa0764270:CDS |
| GGAACGTGCGTGTGAGCGAT+TGG | 0.480052 | 5_2:+23979209 | None:intergenic |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_2:-23978478 | Msa0764270:CDS |
| CTCATATTGTTACCTCAAAA+GGG | 0.481716 | 5_2:-23975447 | Msa0764270:three_prime_UTR |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_2:+23975864 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_2:-23976350 | Msa0764270:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_2:-23977241 | Msa0764270:CDS |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_2:-23976287 | Msa0764270:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_2:-23976263 | Msa0764270:CDS |
| AAGACACGCGAGCGGAAGGA+AGG | 0.489163 | 5_2:+23979166 | None:intergenic |
| CGTGCGTGTGAGCGATTGGA+TGG | 0.490214 | 5_2:+23979213 | None:intergenic |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_2:+23976947 | None:intergenic |
| ACACATGTTGTTTCTGAGGA+AGG | 0.495014 | 5_2:+23975963 | None:intergenic |
| GAGTGACTGCGCAAGATCAA+AGG | 0.495132 | 5_2:+23979288 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_2:-23978956 | Msa0764270:CDS |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_2:-23977368 | Msa0764270:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_2:-23976082 | Msa0764270:CDS |
| GAAGAAGACACGCGAGCGGA+AGG | 0.504767 | 5_2:+23979162 | None:intergenic |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_2:+23976256 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_2:-23977400 | Msa0764270:CDS |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_2:+23978946 | None:intergenic |
| AGTGACTGCGCAAGATCAAA+GGG | 0.513803 | 5_2:+23979289 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_2:-23977133 | Msa0764270:CDS |
| AATGCAGGAATCGCCAGCTC+AGG | 0.518585 | 5_2:-23978385 | Msa0764270:CDS |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_2:-23976921 | Msa0764270:intron |
| TCATATTGTTACTTCTGTAC+GGG | 0.522406 | 5_2:+23975587 | None:intergenic |
| TATACGGATTAAGTAATTGA+CGG | 0.522416 | 5_2:-23975545 | Msa0764270:three_prime_UTR |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_2:+23978372 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_2:+23977412 | None:intergenic |
| AGTTCAATGTCAACTTCTCT+AGG | 0.526075 | 5_2:+23975664 | None:intergenic |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_2:-23976310 | Msa0764270:CDS |
| ATCAAGTTTCTAACCCGTCT+GGG | 0.530266 | 5_2:-23978901 | Msa0764270:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_2:-23977125 | Msa0764270:CDS |
| ACGGTCACCGTCCTGTGATA+CGG | 0.531877 | 5_2:-23978425 | Msa0764270:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_2:+23976911 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.534722 | 5_2:-23977071 | Msa0764270:CDS |
| AGTGATTTCTGAACCCAGAC+GGG | 0.536927 | 5_2:+23978888 | None:intergenic |
| GGAGTGGGACTAGTTGTTGT+GGG | 0.537068 | 5_2:-23978292 | Msa0764270:CDS |
| TCCTTGGTTAAAATAGGAGC+GGG | 0.537789 | 5_2:+23977091 | None:intergenic |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_2:+23977321 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_2:-23975991 | Msa0764270:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_2:+23977413 | None:intergenic |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_2:-23977145 | Msa0764270:CDS |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_2:-23976083 | Msa0764270:CDS |
| TTTAGACTTGGGAGTCCTTG+GGG | 0.549667 | 5_2:+23975378 | None:intergenic |
| ACTGTAAATCTGTTTAGACT+TGG | 0.549831 | 5_2:+23975366 | None:intergenic |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_2:-23977124 | Msa0764270:CDS |
| AGCACAGAATACCGTATCAC+AGG | 0.554283 | 5_2:+23978414 | None:intergenic |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_2:+23977327 | None:intergenic |
| CTGTAAATCTGTTTAGACTT+GGG | 0.563466 | 5_2:+23975367 | None:intergenic |
| AGAACAGCAGCCTCTGCAGA+TGG | 0.566781 | 5_2:+23978202 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_2:+23977172 | None:intergenic |
| TTTGACACATGTTGTTTCTG+AGG | 0.567828 | 5_2:+23975959 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.568877 | 5_2:-23976024 | Msa0764270:CDS |
| AAGGAAGATTTATTGCAACT+GGG | 0.569664 | 5_2:-23976111 | Msa0764270:CDS |
| GATACGGTATTCTGTGCTCC+TGG | 0.569896 | 5_2:-23978409 | Msa0764270:CDS |
| GTTCCCTTCTCATATGATCC+GGG | 0.573231 | 5_2:+23976214 | None:intergenic |
| AATGATCGTGAACTAAAGCT+AGG | 0.576344 | 5_2:+23978806 | None:intergenic |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_2:-23978346 | Msa0764270:CDS |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_2:-23976269 | Msa0764270:CDS |
| TCAGAAACAACATGTGTCAA+AGG | 0.580030 | 5_2:-23975957 | Msa0764270:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_2:-23978140 | Msa0764270:intron |
| ATGGCAAGTAAAGGATATCC+CGG | 0.582009 | 5_2:-23976232 | Msa0764270:CDS |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_2:-23976241 | Msa0764270:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_2:-23976151 | Msa0764270:CDS |
| GGGAGTGGGACTAGTTGTTG+TGG | 0.587947 | 5_2:-23978293 | Msa0764270:CDS |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_2:-23978444 | Msa0764270:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_2:+23978130 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_2:-23977160 | Msa0764270:CDS |
| GAAACTTGATGGTTAATGCA+TGG | 0.594873 | 5_2:+23978914 | None:intergenic |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_2:-23975859 | Msa0764270:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_2:+23978260 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_2:+23978259 | None:intergenic |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_2:-23977373 | Msa0764270:CDS |
| TTCCTTGGTTAAAATAGGAG+CGG | 0.605639 | 5_2:+23977090 | None:intergenic |
| ATATCCCGGATCATATGAGA+AGG | 0.606039 | 5_2:-23976218 | Msa0764270:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_2:-23976130 | Msa0764270:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.611220 | 5_2:-23976109 | Msa0764270:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_2:+23976246 | None:intergenic |
| AAGTGATTTCTGAACCCAGA+CGG | 0.612744 | 5_2:+23978887 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_2:-23976282 | Msa0764270:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_2:-23977176 | Msa0764270:CDS |
| GTGCGTGTGAGCGATTGGAT+GGG | 0.617902 | 5_2:+23979214 | None:intergenic |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_2:+23978341 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_2:-23977028 | Msa0764270:CDS |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_2:+23976137 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_2:+23978261 | None:intergenic |
| TGAGAATGTGAACTGGCCTG+GGG | 0.627067 | 5_2:-23976017 | Msa0764270:CDS |
| AGGAAGATTTATTGCAACTG+GGG | 0.628668 | 5_2:-23976110 | Msa0764270:CDS |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_2:+23977408 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_2:-23977299 | Msa0764270:CDS |
| TTGCTGTAACCCCAAGAACA+CGG | 0.631724 | 5_2:+23976086 | None:intergenic |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_2:-23975860 | Msa0764270:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_2:-23976298 | Msa0764270:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_2:+23978214 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_2:-23977293 | Msa0764270:CDS |
| AGGTTGTCGTGTCATTGTTG+AGG | 0.640873 | 5_2:-23977254 | Msa0764270:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_2:-23977144 | Msa0764270:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_2:+23978949 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_2:-23977154 | Msa0764270:CDS |
| CGGAAGGAAGGAGATGAAGG+CGG | 0.655353 | 5_2:+23979178 | None:intergenic |
| AGAATGAAATAATTACCCCA+AGG | 0.667852 | 5_2:-23975393 | Msa0764270:three_prime_UTR |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_2:-23978503 | Msa0764270:intron |
| TATCCCGGATCATATGAGAA+GGG | 0.670919 | 5_2:-23976217 | Msa0764270:CDS |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_2:-23977292 | Msa0764270:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_2:-23975937 | Msa0764270:exon |
| CAGAATACCGTATCACAGGA+CGG | 0.682013 | 5_2:+23978418 | None:intergenic |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_2:-23976065 | Msa0764270:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_2:-23977130 | Msa0764270:CDS |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_2:-23977420 | Msa0764270:CDS |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_2:+23975706 | None:intergenic |
| TCTTGAAGAAGACACGCGAG+CGG | 0.710565 | 5_2:+23979158 | None:intergenic |
| CCAGGCATAAAAGATCACCT+AGG | 0.727326 | 5_2:+23975724 | None:intergenic |
| GAGAATGTGAACTGGCCTGG+GGG | 0.727578 | 5_2:-23976016 | Msa0764270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTTTTCATATTATA+CGG | - | chr5_2:23979112-23979131 | Msa0764270:intron | 10.0% |
| !!! | TTTATTCTTTTCATATTATA+CGG | - | chr5_2:23979112-23979131 | Msa0764270:intron | 10.0% |
| !! | TCTTTCAAATTATTTAGTTA+AGG | - | chr5_2:23976428-23976447 | Msa0764270:intron | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | + | chr5_2:23977982-23978001 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | + | chr5_2:23977983-23978002 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | - | chr5_2:23978202-23978221 | Msa0764270:CDS | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | - | chr5_2:23978203-23978222 | Msa0764270:CDS | 15.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | + | chr5_2:23975633-23975652 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | + | chr5_2:23976603-23976622 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | + | chr5_2:23976604-23976623 | None:intergenic | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | + | chr5_2:23977729-23977748 | None:intergenic | 20.0% |
| !!! | ACAATGTATTTCAATTTTCA+CGG | + | chr5_2:23977828-23977847 | None:intergenic | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | - | chr5_2:23978204-23978223 | Msa0764270:CDS | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | + | chr5_2:23978844-23978863 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | - | chr5_2:23978869-23978888 | Msa0764270:CDS | 20.0% |
| !! | TATCTTTATGCTCTTTAATA+GGG | + | chr5_2:23978989-23979008 | None:intergenic | 20.0% |
| ! | GAATCAAAAACTTACTTGAT+TGG | + | chr5_2:23975546-23975565 | None:intergenic | 25.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | + | chr5_2:23975666-23975685 | None:intergenic | 25.0% |
| !!! | AAACTGTGTAATTTTGAAAC+AGG | - | chr5_2:23975684-23975703 | Msa0764270:three_prime_UTR | 25.0% |
| !! | ATAAATGAGTAGAGGAATTT+TGG | + | chr5_2:23975818-23975837 | None:intergenic | 25.0% |
| !! | GGTTTTTAATAAATGAGTAG+AGG | + | chr5_2:23975826-23975845 | None:intergenic | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | + | chr5_2:23975893-23975912 | None:intergenic | 25.0% |
| !! | TGTACTGATGTATATTCAAA+GGG | + | chr5_2:23976002-23976021 | None:intergenic | 25.0% |
| !! | ATGTACTGATGTATATTCAA+AGG | + | chr5_2:23976003-23976022 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | - | chr5_2:23976432-23976451 | Msa0764270:intron | 25.0% |
| !! | CTAGTACTGAACAAAATTAA+GGG | + | chr5_2:23976681-23976700 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | + | chr5_2:23976706-23976725 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | - | chr5_2:23976735-23976754 | Msa0764270:intron | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | + | chr5_2:23977129-23977148 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | + | chr5_2:23977130-23977149 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTATA+TGG | - | chr5_2:23977136-23977155 | Msa0764270:CDS | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | + | chr5_2:23977210-23977229 | None:intergenic | 25.0% |
| !! | GTTAAAGTCTAGAACTTATA+AGG | - | chr5_2:23977846-23977865 | Msa0764270:intron | 25.0% |
| ! | CTATAGTTATCATATATGCA+TGG | - | chr5_2:23977897-23977916 | Msa0764270:intron | 25.0% |
| !!! | TTGTTCACTTTTCTTTGTTT+TGG | - | chr5_2:23978035-23978054 | Msa0764270:intron | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | + | chr5_2:23978192-23978211 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | - | chr5_2:23978305-23978324 | Msa0764270:CDS | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | - | chr5_2:23978778-23978797 | Msa0764270:CDS | 25.0% |
| ! | GTATCTTTATGCTCTTTAAT+AGG | + | chr5_2:23978990-23979009 | None:intergenic | 25.0% |
| !! | TATACGGATTAAGTAATTGA+CGG | - | chr5_2:23979128-23979147 | Msa0764270:intron | 25.0% |
| ! | GATCATACTGTAAGTATATA+AGG | + | chr5_2:23979255-23979274 | None:intergenic | 25.0% |
| ATAGAAAGCGAAAAAGGTTT+AGG | + | chr5_2:23975627-23975646 | None:intergenic | 30.0% | |
| ATGAGTGAAGCTTAAATTCA+AGG | + | chr5_2:23975847-23975866 | None:intergenic | 30.0% | |
| AGAATGCTTACTTGAATTGT+TGG | + | chr5_2:23975958-23975977 | None:intergenic | 30.0% | |
| CAGTACATGTAAAACCAAAA+AGG | - | chr5_2:23976015-23976034 | Msa0764270:CDS | 30.0% | |
| AGAGATTAATTTCTATGCAC+TGG | + | chr5_2:23976050-23976069 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | - | chr5_2:23976170-23976189 | Msa0764270:CDS | 30.0% | |
| ! | CCTAGTACTGAACAAAATTA+AGG | + | chr5_2:23976682-23976701 | None:intergenic | 30.0% |
| ! | CCTTAATTTTGTTCAGTACT+AGG | - | chr5_2:23976679-23976698 | Msa0764270:intron | 30.0% |
| AATCACTTGCAAGACTATTT+GGG | + | chr5_2:23976919-23976938 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | + | chr5_2:23976920-23976939 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | + | chr5_2:23976982-23977001 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | - | chr5_2:23977206-23977225 | Msa0764270:CDS | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | - | chr5_2:23977273-23977292 | Msa0764270:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | - | chr5_2:23977432-23977451 | Msa0764270:CDS | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | + | chr5_2:23977466-23977485 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | - | chr5_2:23977465-23977484 | Msa0764270:intron | 30.0% |
| TGAAGTTCCTTGGTTAAAAT+AGG | + | chr5_2:23977591-23977610 | None:intergenic | 30.0% | |
| TACTATAGATTGAAGTTCCT+TGG | + | chr5_2:23977601-23977620 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | - | chr5_2:23977602-23977621 | Msa0764270:intron | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | - | chr5_2:23977630-23977649 | Msa0764270:intron | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | - | chr5_2:23977699-23977718 | Msa0764270:intron | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | - | chr5_2:23977735-23977754 | Msa0764270:intron | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | + | chr5_2:23977773-23977792 | None:intergenic | 30.0% | |
| TCGATGACACAAATTGTATT+AGG | - | chr5_2:23977871-23977890 | Msa0764270:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | - | chr5_2:23978141-23978160 | Msa0764270:CDS | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | + | chr5_2:23978310-23978329 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | - | chr5_2:23978314-23978333 | Msa0764270:CDS | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | - | chr5_2:23978562-23978581 | Msa0764270:intron | 30.0% | |
| TTTATGCTCTTTAATAGGGT+TGG | + | chr5_2:23978985-23979004 | None:intergenic | 30.0% | |
| ! | TCATATTGTTACTTCTGTAC+GGG | + | chr5_2:23979089-23979108 | None:intergenic | 30.0% |
| ! | CTCATATTGTTACTTCTGTA+CGG | + | chr5_2:23979090-23979109 | None:intergenic | 30.0% |
| GTGAAAAAAACTGTTATGAG+AGG | - | chr5_2:23979150-23979169 | Msa0764270:five_prime_UTR | 30.0% | |
| ACTCATATTGTTACCTCAAA+AGG | - | chr5_2:23979225-23979244 | Msa0764270:five_prime_UTR | 30.0% | |
| CTCATATTGTTACCTCAAAA+GGG | - | chr5_2:23979226-23979245 | Msa0764270:five_prime_UTR | 30.0% | |
| AGAATGAAATAATTACCCCA+AGG | - | chr5_2:23979280-23979299 | Msa0764270:five_prime_UTR | 30.0% | |
| CTGTAAATCTGTTTAGACTT+GGG | + | chr5_2:23979309-23979328 | None:intergenic | 30.0% | |
| ACTGTAAATCTGTTTAGACT+TGG | + | chr5_2:23979310-23979329 | None:intergenic | 30.0% | |
| TGAATACGTGAACTGCTTAT+GGG | + | chr5_2:23975415-23975434 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | + | chr5_2:23975416-23975435 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | + | chr5_2:23975730-23975749 | None:intergenic | 35.0% | |
| ! | GAAACTTGATGGTTAATGCA+TGG | + | chr5_2:23975762-23975781 | None:intergenic | 35.0% |
| AATGATCGTGAACTAAAGCT+AGG | + | chr5_2:23975870-23975889 | None:intergenic | 35.0% | |
| GTGCATATTCCTAAGAAGAA+AGG | - | chr5_2:23976166-23976185 | Msa0764270:CDS | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | + | chr5_2:23976178-23976197 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | - | chr5_2:23976533-23976552 | Msa0764270:intron | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | - | chr5_2:23976592-23976611 | Msa0764270:intron | 35.0% |
| !! | GTTGTTTTCATAAGCCATCT+TGG | - | chr5_2:23976829-23976848 | Msa0764270:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | + | chr5_2:23976846-23976865 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | - | chr5_2:23976999-23977018 | Msa0764270:CDS | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | + | chr5_2:23977175-23977194 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | + | chr5_2:23977198-23977217 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | + | chr5_2:23977199-23977218 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | + | chr5_2:23977268-23977287 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | + | chr5_2:23977355-23977374 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | - | chr5_2:23977374-23977393 | Msa0764270:CDS | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | - | chr5_2:23977380-23977399 | Msa0764270:CDS | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | - | chr5_2:23977381-23977400 | Msa0764270:CDS | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | - | chr5_2:23977458-23977477 | Msa0764270:intron | 35.0% |
| TTCCTTGGTTAAAATAGGAG+CGG | + | chr5_2:23977586-23977605 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | - | chr5_2:23977675-23977694 | Msa0764270:intron | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | - | chr5_2:23977676-23977695 | Msa0764270:intron | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | - | chr5_2:23977925-23977944 | Msa0764270:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | + | chr5_2:23978117-23978136 | None:intergenic | 35.0% |
| GCATGGAATATCTTGATATC+TGG | + | chr5_2:23978522-23978541 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | - | chr5_2:23978522-23978541 | Msa0764270:intron | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | - | chr5_2:23978561-23978580 | Msa0764270:intron | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | - | chr5_2:23978563-23978582 | Msa0764270:intron | 35.0% | |
| !! | TTTGACACATGTTGTTTCTG+AGG | + | chr5_2:23978717-23978736 | None:intergenic | 35.0% |
| TCAGAAACAACATGTGTCAA+AGG | - | chr5_2:23978716-23978735 | Msa0764270:intron | 35.0% | |
| AGGTGTAAACTATTGTGACA+AGG | - | chr5_2:23978736-23978755 | Msa0764270:CDS | 35.0% | |
| ATTGTGACAAGGTCAGTAAA+AGG | - | chr5_2:23978747-23978766 | Msa0764270:CDS | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | + | chr5_2:23978812-23978831 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | - | chr5_2:23978814-23978833 | Msa0764270:CDS | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | + | chr5_2:23978824-23978843 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | - | chr5_2:23978932-23978951 | Msa0764270:CDS | 35.0% | |
| AGTTCAATGTCAACTTCTCT+AGG | + | chr5_2:23979012-23979031 | None:intergenic | 35.0% | |
| ! | TATATAAGGCAACCCTTTTG+AGG | + | chr5_2:23979241-23979260 | None:intergenic | 35.0% |
| AGAAGTTCCAACATTGAAGG+TGG | + | chr5_2:23975727-23975746 | None:intergenic | 40.0% | |
| ATCAAGTTTCTAACCCGTCT+GGG | - | chr5_2:23975772-23975791 | Msa0764270:three_prime_UTR | 40.0% | |
| AAGTGATTTCTGAACCCAGA+CGG | + | chr5_2:23975789-23975808 | None:intergenic | 40.0% | |
| ! | ACTGGCAGTGTAAACCTTTT+TGG | + | chr5_2:23976032-23976051 | None:intergenic | 40.0% |
| AGAAGAAAGGATGGTTGTTC+TGG | - | chr5_2:23976179-23976198 | Msa0764270:CDS | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | - | chr5_2:23976186-23976205 | Msa0764270:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | - | chr5_2:23976195-23976214 | Msa0764270:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | - | chr5_2:23976229-23976248 | Msa0764270:CDS | 40.0% |
| TCAGACCTTGATGTTTGTGA+TGG | - | chr5_2:23976327-23976346 | Msa0764270:CDS | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | - | chr5_2:23976358-23976377 | Msa0764270:intron | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | - | chr5_2:23976359-23976378 | Msa0764270:intron | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | + | chr5_2:23976416-23976435 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | + | chr5_2:23976417-23976436 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | + | chr5_2:23976583-23976602 | None:intergenic | 40.0% | |
| TGTGATAAGTCGATCCAAAC+AGG | - | chr5_2:23976955-23976974 | Msa0764270:CDS | 40.0% | |
| AGGGAAGAACACCATATACA+TGG | + | chr5_2:23977150-23977169 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | + | chr5_2:23977169-23977188 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | + | chr5_2:23977170-23977189 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | + | chr5_2:23977179-23977198 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | - | chr5_2:23977178-23977197 | Msa0764270:CDS | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | + | chr5_2:23977303-23977322 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | - | chr5_2:23977300-23977319 | Msa0764270:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | + | chr5_2:23977349-23977368 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | - | chr5_2:23977390-23977409 | Msa0764270:CDS | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | - | chr5_2:23977497-23977516 | Msa0764270:intron | 40.0% | |
| TCCTTGGTTAAAATAGGAGC+GGG | + | chr5_2:23977585-23977604 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | + | chr5_2:23977642-23977661 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | - | chr5_2:23977645-23977664 | Msa0764270:intron | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | - | chr5_2:23977908-23977927 | Msa0764270:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | - | chr5_2:23978183-23978202 | Msa0764270:CDS | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | - | chr5_2:23978319-23978338 | Msa0764270:CDS | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | - | chr5_2:23978432-23978451 | Msa0764270:CDS | 40.0% |
| ATGGCAAGTAAAGGATATCC+CGG | - | chr5_2:23978441-23978460 | Msa0764270:CDS | 40.0% | |
| ATATCCCGGATCATATGAGA+AGG | - | chr5_2:23978455-23978474 | Msa0764270:CDS | 40.0% | |
| TATCCCGGATCATATGAGAA+GGG | - | chr5_2:23978456-23978475 | Msa0764270:CDS | 40.0% | |
| AGTTCCCTTCTCATATGATC+CGG | + | chr5_2:23978463-23978482 | None:intergenic | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | - | chr5_2:23978564-23978583 | Msa0764270:intron | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | - | chr5_2:23978608-23978627 | Msa0764270:intron | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | - | chr5_2:23978649-23978668 | Msa0764270:intron | 40.0% | |
| !! | CACATGTTGTTTCTGAGGAA+GGG | + | chr5_2:23978712-23978731 | None:intergenic | 40.0% |
| !! | ACACATGTTGTTTCTGAGGA+AGG | + | chr5_2:23978713-23978732 | None:intergenic | 40.0% |
| GAGCATCTCCAATATAAGTG+AGG | - | chr5_2:23978813-23978832 | Msa0764270:CDS | 40.0% | |
| ! | CTAGGTGATCTTTTATGCCT+GGG | - | chr5_2:23978950-23978969 | Msa0764270:CDS | 40.0% |
| GGGTCTTTCTGCTCTTTAAT+AGG | + | chr5_2:23979069-23979088 | None:intergenic | 40.0% | |
| AGTGACTGCGCAAGATCAAA+GGG | + | chr5_2:23975387-23975406 | None:intergenic | 45.0% | |
| TCTGCTTCTTTCTGGGTTTG+AGG | + | chr5_2:23975439-23975458 | None:intergenic | 45.0% | |
| ! | TCACACGCACGTTCCATTTT+TGG | - | chr5_2:23975472-23975491 | Msa0764270:three_prime_UTR | 45.0% |
| TCTTGCACCACCTTCAATGT+TGG | - | chr5_2:23975717-23975736 | Msa0764270:three_prime_UTR | 45.0% | |
| !! | CAGACGGGTTAGAAACTTGA+TGG | + | chr5_2:23975773-23975792 | None:intergenic | 45.0% |
| CATCAAGTTTCTAACCCGTC+TGG | - | chr5_2:23975771-23975790 | Msa0764270:three_prime_UTR | 45.0% | |
| AGTGATTTCTGAACCCAGAC+GGG | + | chr5_2:23975788-23975807 | None:intergenic | 45.0% | |
| CAGAATACCGTATCACAGGA+CGG | + | chr5_2:23976258-23976277 | None:intergenic | 45.0% | |
| AGCACAGAATACCGTATCAC+AGG | + | chr5_2:23976262-23976281 | None:intergenic | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | + | chr5_2:23976335-23976354 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | - | chr5_2:23976352-23976371 | Msa0764270:intron | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | - | chr5_2:23976360-23976379 | Msa0764270:intron | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | + | chr5_2:23976415-23976434 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | - | chr5_2:23976447-23976466 | Msa0764270:intron | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | + | chr5_2:23976462-23976481 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | + | chr5_2:23976546-23976565 | None:intergenic | 45.0% | |
| TGAACCTTGTAGGACCTGTT+TGG | + | chr5_2:23976972-23976991 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | + | chr5_2:23977263-23977282 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | + | chr5_2:23977264-23977283 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | - | chr5_2:23977305-23977324 | Msa0764270:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | - | chr5_2:23977399-23977418 | Msa0764270:CDS | 45.0% |
| ! | AGGTTGTCGTGTCATTGTTG+AGG | - | chr5_2:23977419-23977438 | Msa0764270:CDS | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | - | chr5_2:23977519-23977538 | Msa0764270:intron | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | + | chr5_2:23977524-23977543 | None:intergenic | 45.0% | |
| !!! | TCCCGCTCCTATTTTAACCA+AGG | - | chr5_2:23977581-23977600 | Msa0764270:intron | 45.0% |
| GCAGAAGGTCGTAAGTTTGT+TGG | - | chr5_2:23977660-23977679 | Msa0764270:intron | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | - | chr5_2:23978386-23978405 | Msa0764270:CDS | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | + | chr5_2:23978430-23978449 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+GGG | + | chr5_2:23978462-23978481 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | + | chr5_2:23978497-23978516 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | + | chr5_2:23978539-23978558 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | - | chr5_2:23978543-23978562 | Msa0764270:intron | 45.0% | |
| TTGCTGTAACCCCAAGAACA+CGG | + | chr5_2:23978590-23978609 | None:intergenic | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | - | chr5_2:23978590-23978609 | Msa0764270:intron | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | - | chr5_2:23978591-23978610 | Msa0764270:intron | 45.0% | |
| ! | TTGAGAATGTGAACTGGCCT+GGG | - | chr5_2:23978655-23978674 | Msa0764270:intron | 45.0% |
| GGATTCTATCGTCGGGATAT+TGG | - | chr5_2:23978678-23978697 | Msa0764270:intron | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | - | chr5_2:23978682-23978701 | Msa0764270:intron | 45.0% | |
| CCAGGCATAAAAGATCACCT+AGG | + | chr5_2:23978952-23978971 | None:intergenic | 45.0% | |
| ! | CCTAGGTGATCTTTTATGCC+TGG | - | chr5_2:23978949-23978968 | Msa0764270:CDS | 45.0% |
| TTTAGACTTGGGAGTCCTTG+GGG | + | chr5_2:23979298-23979317 | None:intergenic | 45.0% | |
| GTTTAGACTTGGGAGTCCTT+GGG | + | chr5_2:23979299-23979318 | None:intergenic | 45.0% | |
| TGTTTAGACTTGGGAGTCCT+TGG | + | chr5_2:23979300-23979319 | None:intergenic | 45.0% | |
| GAGTGACTGCGCAAGATCAA+AGG | + | chr5_2:23975388-23975407 | None:intergenic | 50.0% | |
| GGATGGGTCTGCTTCTTTCT+GGG | + | chr5_2:23975446-23975465 | None:intergenic | 50.0% | |
| TGGATGGGTCTGCTTCTTTC+TGG | + | chr5_2:23975447-23975466 | None:intergenic | 50.0% | |
| GAGATGAAGGCGGCCAAAAA+TGG | + | chr5_2:23975488-23975507 | None:intergenic | 50.0% | |
| TCTTGAAGAAGACACGCGAG+CGG | + | chr5_2:23975518-23975537 | None:intergenic | 50.0% | |
| GATACGGTATTCTGTGCTCC+TGG | - | chr5_2:23976264-23976283 | Msa0764270:CDS | 50.0% | |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | - | chr5_2:23976365-23976384 | Msa0764270:intron | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | - | chr5_2:23976366-23976385 | Msa0764270:intron | 50.0% |
| !! | GGAGTGGGACTAGTTGTTGT+GGG | - | chr5_2:23976381-23976400 | Msa0764270:intron | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | - | chr5_2:23976461-23976480 | Msa0764270:intron | 50.0% |
| CGATCCAAACAGGTCCTACA+AGG | - | chr5_2:23976965-23976984 | Msa0764270:CDS | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | + | chr5_2:23977195-23977214 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | + | chr5_2:23977319-23977338 | None:intergenic | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | + | chr5_2:23977504-23977523 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | - | chr5_2:23977513-23977532 | Msa0764270:intron | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | - | chr5_2:23977528-23977547 | Msa0764270:intron | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | - | chr5_2:23977529-23977548 | Msa0764270:intron | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | - | chr5_2:23977752-23977771 | Msa0764270:intron | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | + | chr5_2:23977765-23977784 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | - | chr5_2:23978323-23978342 | Msa0764270:CDS | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | - | chr5_2:23978335-23978354 | Msa0764270:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | - | chr5_2:23978361-23978380 | Msa0764270:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | - | chr5_2:23978362-23978381 | Msa0764270:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | - | chr5_2:23978391-23978410 | Msa0764270:CDS | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | - | chr5_2:23978422-23978441 | Msa0764270:CDS | 50.0% | |
| GTTGAGAATGTGAACTGGCC+TGG | - | chr5_2:23978654-23978673 | Msa0764270:intron | 50.0% | |
| ! | TGAGAATGTGAACTGGCCTG+GGG | - | chr5_2:23978656-23978675 | Msa0764270:intron | 50.0% |
| ! | AGGGTTGGCATAGATAACCC+AGG | + | chr5_2:23978970-23978989 | None:intergenic | 50.0% |
| GTGCGTGTGAGCGATTGGAT+GGG | + | chr5_2:23975462-23975481 | None:intergenic | 55.0% | |
| CGGAAGGAAGGAGATGAAGG+CGG | + | chr5_2:23975498-23975517 | None:intergenic | 55.0% | |
| GAGCGGAAGGAAGGAGATGA+AGG | + | chr5_2:23975501-23975520 | None:intergenic | 55.0% | |
| ACGGTCACCGTCCTGTGATA+CGG | - | chr5_2:23976248-23976267 | Msa0764270:CDS | 55.0% | |
| TTCTGTGCTCCTGGCAATGC+AGG | - | chr5_2:23976273-23976292 | Msa0764270:CDS | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | - | chr5_2:23976288-23976307 | Msa0764270:CDS | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | + | chr5_2:23976304-23976323 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | + | chr5_2:23976374-23976393 | None:intergenic | 55.0% | |
| !! | GGGAGTGGGACTAGTTGTTG+TGG | - | chr5_2:23976380-23976399 | Msa0764270:intron | 55.0% |
| AGAACAGCAGCCTCTGCAGA+TGG | + | chr5_2:23976474-23976493 | None:intergenic | 55.0% | |
| ! | GCAGAGGCTGCTGTTCTAGA+AGG | - | chr5_2:23976477-23976496 | Msa0764270:intron | 55.0% |
| TTACAGACCCATCCGCAGCA+AGG | - | chr5_2:23977253-23977272 | Msa0764270:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | - | chr5_2:23977318-23977337 | Msa0764270:CDS | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | - | chr5_2:23977540-23977559 | Msa0764270:intron | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | - | chr5_2:23977543-23977562 | Msa0764270:intron | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | - | chr5_2:23977548-23977567 | Msa0764270:intron | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | - | chr5_2:23977549-23977568 | Msa0764270:intron | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | + | chr5_2:23977555-23977574 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | - | chr5_2:23978363-23978382 | Msa0764270:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | - | chr5_2:23978399-23978418 | Msa0764270:CDS | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | - | chr5_2:23978404-23978423 | Msa0764270:CDS | 55.0% |
| ! | GAGAATGTGAACTGGCCTGG+GGG | - | chr5_2:23978657-23978676 | Msa0764270:intron | 55.0% |
| CGTGCGTGTGAGCGATTGGA+TGG | + | chr5_2:23975463-23975482 | None:intergenic | 60.0% | |
| GGAACGTGCGTGTGAGCGAT+TGG | + | chr5_2:23975467-23975486 | None:intergenic | 60.0% | |
| AAGACACGCGAGCGGAAGGA+AGG | + | chr5_2:23975510-23975529 | None:intergenic | 60.0% | |
| GAAGAAGACACGCGAGCGGA+AGG | + | chr5_2:23975514-23975533 | None:intergenic | 60.0% | |
| CTGGCGATTCCTGCATTGCC+AGG | + | chr5_2:23976285-23976304 | None:intergenic | 60.0% | |
| CCTGCAACAAGTGGGGCTTC+AGG | + | chr5_2:23976408-23976427 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | - | chr5_2:23976405-23976424 | Msa0764270:intron | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | - | chr5_2:23977312-23977331 | Msa0764270:CDS | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | - | chr5_2:23978375-23978394 | Msa0764270:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | - | chr5_2:23978416-23978435 | Msa0764270:CDS | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | + | chr5_2:23978420-23978439 | None:intergenic | 60.0% | |
| CAACTGGGGGCCGTGTTCTT+GGG | - | chr5_2:23978577-23978596 | Msa0764270:intron | 60.0% | |
| AACTGGGGGCCGTGTTCTTG+GGG | - | chr5_2:23978578-23978597 | Msa0764270:intron | 60.0% | |
| GGCCTGGGGGATTCTATCGT+CGG | - | chr5_2:23978670-23978689 | Msa0764270:intron | 60.0% | |
| GCCTGGGGGATTCTATCGTC+GGG | - | chr5_2:23978671-23978690 | Msa0764270:intron | 60.0% | |
| TCCCGACGATAGAATCCCCC+AGG | + | chr5_2:23978675-23978694 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | - | chr5_2:23978410-23978429 | Msa0764270:CDS | 65.0% | |
| GCAACTGGGGGCCGTGTTCT+TGG | - | chr5_2:23978576-23978595 | Msa0764270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 23975359 | 23979336 | 23975359 | ID=Msa0764270;Name=Msa0764270 |
| chr5_2 | mRNA | 23975359 | 23979336 | 23975359 | ID=Msa0764270-mRNA-1;Parent=Msa0764270;Name=Msa0764270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=200|0.75|0.8|1|0.75|0.6|5|593|524 |
| chr5_2 | exon | 23975359 | 23976368 | 23975359 | ID=Msa0764270-mRNA-1:exon:9820;Parent=Msa0764270-mRNA-1 |
| chr5_2 | exon | 23976922 | 23977452 | 23976922 | ID=Msa0764270-mRNA-1:exon:9819;Parent=Msa0764270-mRNA-1 |
| chr5_2 | exon | 23978141 | 23978514 | 23978141 | ID=Msa0764270-mRNA-1:exon:9818;Parent=Msa0764270-mRNA-1 |
| chr5_2 | exon | 23978729 | 23978989 | 23978729 | ID=Msa0764270-mRNA-1:exon:9817;Parent=Msa0764270-mRNA-1 |
| chr5_2 | exon | 23979145 | 23979336 | 23979145 | ID=Msa0764270-mRNA-1:exon:9816;Parent=Msa0764270-mRNA-1 |
| chr5_2 | five_prime_UTR | 23979145 | 23979336 | 23979145 | ID=Msa0764270-mRNA-1:five_prime_utr;Parent=Msa0764270-mRNA-1 |
| chr5_2 | five_prime_UTR | 23978982 | 23978989 | 23978982 | ID=Msa0764270-mRNA-1:five_prime_utr;Parent=Msa0764270-mRNA-1 |
| chr5_2 | CDS | 23978729 | 23978981 | 23978729 | ID=Msa0764270-mRNA-1:cds;Parent=Msa0764270-mRNA-1 |
| chr5_2 | CDS | 23978141 | 23978514 | 23978141 | ID=Msa0764270-mRNA-1:cds;Parent=Msa0764270-mRNA-1 |
| chr5_2 | CDS | 23976922 | 23977452 | 23976922 | ID=Msa0764270-mRNA-1:cds;Parent=Msa0764270-mRNA-1 |
| chr5_2 | CDS | 23975952 | 23976368 | 23975952 | ID=Msa0764270-mRNA-1:cds;Parent=Msa0764270-mRNA-1 |
| chr5_2 | three_prime_UTR | 23975359 | 23975951 | 23975359 | ID=Msa0764270-mRNA-1:three_prime_utr;Parent=Msa0764270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
