AlfalfaGEDB | Msa0845090

M. sativa cultivar zhongmu-4 / Msa0845090

KEGG: K15275
GO: GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505
PFAM: PF08449.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845090	XP_003613633.1	99.699	332	1	0	1	332	1	332	0.0	677

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845090	sp\|Q9M9S6\|UTR3_ARATH	88.822	331	37	0	1	331	1	331	0.0	604

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845090	Q2HTW1	99.699	332	1	0	1	332	1	332	0.0	677

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432130	Msa0845090	0.820111	8.153106e-53	-8.615850e-47
Msa0476640	Msa0845090	0.816629	5.010296e-52	-8.615850e-47
Msa0707100	Msa0845090	0.845957	2.936335e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845090	MtrunA17_Chr5g0416331	99.699	332	1	0	1	332	1	332	0.0	677
Msa0845090	MtrunA17_Chr2g0327761	32.550	298	195	4	16	311	28	321	1.07e-35	132
Msa0845090	MtrunA17_Chr4g0030811	30.794	315	196	5	14	318	29	331	1.11e-32	124
Msa0845090	MtrunA17_Chr7g0246821	24.756	307	200	9	17	315	27	310	1.48e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845090	AT1G14360.1	88.822	331	37	0	1	331	1	331	0.0	604
Msa0845090	AT2G02810.1	83.434	332	55	0	1	332	1	332	0.0	568
Msa0845090	AT3G46180.1	30.769	325	212	4	15	331	21	340	1.54e-31	121
Msa0845090	AT5G59740.1	31.429	315	208	3	15	326	20	329	4.08e-30	117
Msa0845090	AT3G46180.2	32.472	271	173	4	15	281	21	285	1.59e-27	109
Msa0845090	AT1G12600.1	25.828	302	195	9	17	311	29	308	3.55e-17	81.6
Msa0845090	AT4G23010.1	28.922	204	132	5	102	302	102	295	3.43e-15	75.9
Msa0845090	AT4G23010.2	27.397	219	133	6	102	302	102	312	2.11e-13	70.9

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Find 116 sgRNAs with CRISPR-Local

Find 1765 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCCCATGCTGCTTC+TGG	0.276882	5_4:-23779126	None:intergenic
AAACATAGCCCATATCCAAG+AGG	0.688551	5_4:-23778179	None:intergenic
AAAGCTTCAATTCCCATAGC+AGG	0.502581	5_4:-23775936	None:intergenic
AAATTTAGGTTTATATACAA+AGG	0.584188	5_4:+23779506	Msa0845090:three_prime_UTR
AAATTTGCGAGTGGTAGTGA+TGG	0.603630	5_4:-23779229	None:intergenic
AACAACATCCAGAAGCAGCA+TGG	0.568553	5_4:+23779118	Msa0845090:CDS
AACACCTCCAGCAACAAGGA+AGG	0.653676	5_4:-23777990	None:intergenic
AACCGGAACGGTATGAAGAT+CGG	0.557876	5_4:-23774892	None:intergenic
AAGCTTTAAGTGATAAAACA+AGG	0.561340	5_4:-23779467	None:intergenic
AATACTATTGGTCCTGCTAT+GGG	0.523343	5_4:+23775924	Msa0845090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATGACACTTCTAATCGA+AGG	-	chr5_4:23775382-23775401	None:intergenic	30.0%
TGGTAGACAGTAATTATACA+TGG	-	chr5_4:23775626-23775645	None:intergenic	30.0%
AAATGACATTTAACACGTGT+CGG	-	chr5_4:23775717-23775736	None:intergenic	30.0%
TATGTGTAGTGATAAAGATC+TGG	+	chr5_4:23775844-23775863	Msa0845090:intron	30.0%
ATGTGTAGTGATAAAGATCT+GGG	+	chr5_4:23775845-23775864	Msa0845090:intron	30.0%
GCTGGAATTACTAATACTAT+TGG	+	chr5_4:23775912-23775931	Msa0845090:CDS	30.0%
TATAGTCGTAAACTATGGTA+TGG	+	chr5_4:23776007-23776026	Msa0845090:intron	30.0%
ATAGTCGTAAACTATGGTAT+GGG	+	chr5_4:23776008-23776027	Msa0845090:intron	30.0%
ACAAGACCTATATAAAATCC+TGG	-	chr5_4:23776164-23776183	None:intergenic	30.0%
TAAATTGTGAGATCGTAACA+TGG	+	chr5_4:23776395-23776414	Msa0845090:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	23774878	23779878	23774878	ID=Msa0845090;Name=Msa0845090
chr5_4	mRNA	23774878	23779878	23774878	ID=Msa0845090-mRNA-1;Parent=Msa0845090;Name=Msa0845090-mRNA-1;_AED=0.23;_eAED=0.23;_QI=94\|1\|1\|1\|0.83\|0.85\|7\|474\|332
chr5_4	exon	23774878	23775075	23774878	ID=Msa0845090-mRNA-1:exon:9711;Parent=Msa0845090-mRNA-1
chr5_4	exon	23775169	23775266	23775169	ID=Msa0845090-mRNA-1:exon:9712;Parent=Msa0845090-mRNA-1
chr5_4	exon	23775853	23775983	23775853	ID=Msa0845090-mRNA-1:exon:9713;Parent=Msa0845090-mRNA-1
chr5_4	exon	23777270	23777300	23777270	ID=Msa0845090-mRNA-1:exon:9714;Parent=Msa0845090-mRNA-1
chr5_4	exon	23777930	23778033	23777930	ID=Msa0845090-mRNA-1:exon:9715;Parent=Msa0845090-mRNA-1
chr5_4	exon	23778137	23778258	23778137	ID=Msa0845090-mRNA-1:exon:9716;Parent=Msa0845090-mRNA-1
chr5_4	exon	23778996	23779878	23778996	ID=Msa0845090-mRNA-1:exon:9717;Parent=Msa0845090-mRNA-1
chr5_4	five_prime_UTR	23774878	23774971	23774878	ID=Msa0845090-mRNA-1:five_prime_utr;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23774972	23775075	23774972	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23775169	23775266	23775169	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23775853	23775983	23775853	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23777270	23777300	23777270	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23777930	23778033	23777930	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23778137	23778258	23778137	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	CDS	23778996	23779404	23778996	ID=Msa0845090-mRNA-1:cds;Parent=Msa0845090-mRNA-1
chr5_4	three_prime_UTR	23779405	23779878	23779405	ID=Msa0845090-mRNA-1:three_prime_utr;Parent=Msa0845090-mRNA-1

Gene Sequence

>Msa0845090

ATGGAAGCTCACGGCGGAGGTCTCCGCCGCATCCTTGTCCTCGCCTTCTGCGTCGCCGGAATCTGGTCGGCGTATATTTACCAAGGCATTCTTCAGGAAACACTGTCAACGAAGCGATTTGGTAAAGATGGTGAGAGATTTGAGCATCTTGCGTTTTTGAACTTGGCGCAGAACGTGGTTTGTTTAATTTGGTCATATATAATGATAAAGATCTGGGGTGGTGGAAATACTGGTGGTGCTCCTTGGTGGTCTTATTGGAGTGCTGGAATTACTAATACTATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGGTGCTGGCGAAGTCCTCAAAAATGATTCCAGTTATGTTGATGGGTTCACTCGTATACGGTATAAGATACACCATCCCAGAATACCTTTGTACCTTCCTTGTTGCTGGAGGTGTTTCATCATTTGCACTTCTAAAGACCAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCTCTTGGATATGGGCTATGTTTCTTGAACCTTGCTTTTGATGGATTTACTAATGCAACCCAGGATTCCTTAAAAGCAAGGTACCCAAAAACAAGTGCTTGGGGTATTATGTTAGGCATGAATTTATGGGGAACCATATACAATATGATTTACATGTTTGCATGGCCAAGTGGTAGTGGATATGAGGCAGTTAACTTTTGCAAACAACATCCAGAAGCAGCATGGGATATTTTACTGTATTGCTGCTGTGGTGCTGTGGGACAGAACTTTATATTCTTGACTATAAGCCGGTTTGGCTCTTTAGCTAACACTACCATCACTACCACTCGCAAATTTGTAAGCATCGTGGTATCTTCACTATTGAGTGGGAATCCCCTTTCAACAAAGCAATGGGGGTGTGTTACTATGGTATTCTCTGGATTATCATACCAGATCTACCTCAAGTGGCAGAAGTTGCAGAGACTGCAGAAGAAGAAAAAAGCCACATGA

Protein sequence

>Msa0845090

MEAHGGGLRRILVLAFCVAGIWSAYIYQGILQETLSTKRFGKDGERFEHLAFLNLAQNVVCLIWSYIMIKIWGGGNTGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYTIPEYLCTFLVAGGVSSFALLKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSLKARYPKTSAWGIMLGMNLWGTIYNMIYMFAWPSGSGYEAVNFCKQHPEAAWDILLYCCCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSLLSGNPLSTKQWGCVTMVFSGLSYQIYLKWQKLQRLQKKKKAT*