AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0845100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845100 MtrunA17_Chr5g0416341 92.077 467 17 2 1 448 1 466 0.0 886
Msa0845100 MtrunA17_Chr8g0362231 49.576 472 166 17 6 445 1 432 1.13e-133 392
Msa0845100 MtrunA17_Chr7g0238631 35.882 170 64 4 29 159 116 279 2.11e-17 84.7
Msa0845100 MtrunA17_Chr7g0228401 48.485 66 34 0 37 102 309 374 6.43e-14 73.6
Msa0845100 MtrunA17_Chr3g0139671 33.065 124 60 3 29 129 88 211 7.45e-14 73.9
Msa0845100 MtrunA17_Chr1g0157731 34.694 98 45 1 29 107 94 191 1.59e-13 73.2
Msa0845100 MtrunA17_Chr1g0168661 32.593 135 65 3 6 118 7 137 1.74e-13 70.5
Msa0845100 MtrunA17_Chr2g0309911 32.500 120 61 1 29 128 16 135 1.76e-13 71.2
Msa0845100 MtrunA17_Chr6g0450101 35.135 111 52 1 29 119 19 129 2.48e-13 68.9
Msa0845100 MtrunA17_Chr7g0228231 36.634 101 44 1 29 109 19 119 2.56e-13 68.9
Msa0845100 MtrunA17_Chr1g0167661 34.711 121 54 3 29 129 17 132 2.87e-13 69.7
Msa0845100 MtrunA17_Chr4g0055981 40.385 104 41 2 29 111 60 163 2.88e-13 69.3
Msa0845100 MtrunA17_Chr3g0088461 38.776 98 55 2 17 109 30 127 6.46e-13 69.7
Msa0845100 MtrunA17_Chr8g0349261 38.000 100 41 2 29 107 18 117 6.66e-13 69.3
Msa0845100 MtrunA17_Chr3g0117511 37.719 114 49 3 17 110 173 284 1.25e-12 69.3
Msa0845100 MtrunA17_Chr4g0070641 30.263 152 78 3 28 151 16 167 1.40e-12 65.9
Msa0845100 MtrunA17_Chr1g0209661 34.653 101 46 1 29 109 32 132 1.40e-12 68.6
Msa0845100 MtrunA17_Chr1g0193801 35.398 113 66 2 8 113 9 121 1.85e-12 68.6
Msa0845100 MtrunA17_Chr1g0177901 51.786 56 27 0 47 102 34 89 1.91e-12 66.2
Msa0845100 MtrunA17_Chr4g0070611 36.634 101 44 1 29 109 17 117 2.37e-12 67.8
Msa0845100 MtrunA17_Chr2g0330041 48.333 60 31 0 48 107 56 115 2.63e-12 68.2
Msa0845100 MtrunA17_Chr5g0429661 31.293 147 92 4 13 154 124 266 3.27e-12 67.8
Msa0845100 MtrunA17_Chr7g0228531 36.290 124 55 5 8 109 199 320 3.31e-12 68.2
Msa0845100 MtrunA17_Chr4g0058991 35.398 113 49 3 20 110 200 310 3.45e-12 68.2
Msa0845100 MtrunA17_Chr1g0194291 36.634 101 44 1 29 109 26 126 3.53e-12 66.6
Msa0845100 MtrunA17_Chr7g0261281 31.410 156 84 3 29 164 17 169 3.90e-12 66.6
Msa0845100 MtrunA17_Chr7g0247131 46.774 62 33 0 48 109 22 83 3.91e-12 66.6
Msa0845100 MtrunA17_Chr7g0233061 44.118 68 38 0 35 102 206 273 4.23e-12 67.4
Msa0845100 MtrunA17_Chr1g0193371 32.381 105 51 1 29 113 17 121 5.59e-12 67.0
Msa0845100 MtrunA17_Chr5g0397841 34.783 92 41 1 28 100 112 203 6.75e-12 67.4
Msa0845100 MtrunA17_Chr4g0048511 36.364 99 43 1 29 107 18 116 9.23e-12 66.2
Msa0845100 MtrunA17_Chr1g0152011 32.624 141 64 3 29 138 17 157 9.40e-12 66.2
Msa0845100 MtrunA17_Chr3g0099131 33.663 101 47 1 29 109 46 146 1.13e-11 66.6
Msa0845100 MtrunA17_Chr8g0343831 34.862 109 50 2 22 109 6 114 1.17e-11 64.7
Msa0845100 MtrunA17_Chr7g0275911 34.286 105 49 1 25 109 13 117 1.36e-11 64.7
Msa0845100 MtrunA17_Chr8g0342541 37.383 107 60 2 8 107 9 115 1.54e-11 65.5
Msa0845100 MtrunA17_Chr3g0103281 36.364 99 43 1 29 107 17 115 2.28e-11 64.7
Msa0845100 MtrunA17_Chr1g0203411 34.545 110 49 2 23 109 8 117 2.50e-11 64.3
Msa0845100 MtrunA17_Chr8g0342481 35.000 100 44 1 29 107 17 116 2.52e-11 65.1
Msa0845100 MtrunA17_Chr3g0135311 35.000 100 44 1 29 107 17 116 2.86e-11 64.7
Msa0845100 MtrunA17_Chr5g0410961 34.343 99 45 1 29 107 17 115 3.21e-11 64.7
Msa0845100 MtrunA17_Chr4g0068061 33.333 99 46 1 29 107 17 115 3.52e-11 64.3
Msa0845100 MtrunA17_Chr8g0342521 45.000 60 33 0 48 107 56 115 3.67e-11 64.3
Msa0845100 MtrunA17_Chr7g0270891 31.429 105 52 1 29 113 17 121 3.73e-11 64.3
Msa0845100 MtrunA17_Chr4g0032401 39.726 73 44 0 48 120 61 133 3.82e-11 64.3
Msa0845100 MtrunA17_Chr2g0327821 32.673 101 48 1 29 109 11 111 3.91e-11 63.2
Msa0845100 MtrunA17_Chr5g0395281 25.769 260 132 8 29 241 17 262 4.66e-11 63.5
Msa0845100 MtrunA17_Chr2g0323411 34.343 99 45 1 29 107 17 115 5.19e-11 63.9
Msa0845100 MtrunA17_Chr3g0131121 27.465 142 81 2 29 150 17 156 6.43e-11 63.2
Msa0845100 MtrunA17_Chr2g0281071 36.364 99 43 1 29 107 18 116 6.73e-11 63.5
Msa0845100 MtrunA17_Chr4g0037141 33.333 99 46 1 29 107 17 115 7.63e-11 62.8
Msa0845100 MtrunA17_Chr1g0151941 33.000 100 46 1 29 107 17 116 8.03e-11 62.4
Msa0845100 MtrunA17_Chr4g0044421 33.000 100 47 1 28 107 16 115 8.28e-11 61.2
Msa0845100 MtrunA17_Chr1g0186061 33.663 101 47 1 29 109 25 125 8.34e-11 62.4
Msa0845100 MtrunA17_Chr1g0167691 35.354 99 44 1 29 107 17 115 8.46e-11 62.4
Msa0845100 MtrunA17_Chr7g0228481 35.965 114 50 4 11 102 202 314 8.67e-11 63.5
Msa0845100 MtrunA17_Chr8g0354661 28.261 138 65 3 6 109 5 142 9.30e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845100 AT2G02820.2 52.664 488 180 13 2 448 6 483 9.40e-154 445
Msa0845100 AT1G14350.2 50.870 460 158 12 17 448 16 435 4.60e-142 414
Msa0845100 AT1G14350.1 50.870 460 158 12 17 448 16 435 4.60e-142 414
Msa0845100 AT2G02820.1 50.993 453 171 13 2 413 6 448 5.13e-133 391
Msa0845100 AT1G14350.3 51.220 410 151 11 48 448 23 392 2.30e-126 372
Msa0845100 AT1G14350.4 51.220 410 151 11 48 448 23 392 2.30e-126 372
Msa0845100 AT2G02820.3 55.152 330 112 7 2 297 6 333 6.41e-113 335
Msa0845100 AT3G27785.1 33.333 141 72 3 7 126 168 307 5.07e-15 77.4
Msa0845100 AT3G09370.2 29.714 175 96 4 37 186 165 337 7.03e-15 77.0
Msa0845100 AT3G09370.1 29.714 175 96 4 37 186 160 332 8.76e-15 76.6
Msa0845100 AT3G09370.3 29.714 175 96 4 37 186 173 345 8.87e-15 77.0
Msa0845100 AT5G02320.1 36.634 101 45 1 29 110 130 230 1.38e-14 76.3
Msa0845100 AT5G02320.2 36.634 101 45 1 29 110 130 230 1.38e-14 76.3
Msa0845100 AT5G02320.3 36.634 101 45 1 29 110 70 170 1.84e-14 75.9
Msa0845100 AT5G11510.3 34.694 98 45 1 29 107 84 181 2.70e-13 72.8
Msa0845100 AT5G11510.1 34.694 98 45 1 29 107 84 181 2.70e-13 72.8
Msa0845100 AT5G11510.4 34.694 98 45 1 29 107 84 181 2.70e-13 72.8
Msa0845100 AT5G11510.2 34.694 98 45 1 29 107 84 181 3.11e-13 72.4
Msa0845100 AT5G11510.5 34.694 98 45 1 29 107 84 181 3.25e-13 72.4
Msa0845100 AT5G58850.1 30.323 155 74 3 3 133 92 236 4.69e-13 71.2
Msa0845100 AT1G09540.1 34.286 105 49 1 29 113 17 121 5.99e-13 70.5
Msa0845100 AT3G27920.1 34.426 122 55 2 6 107 1 117 6.16e-13 68.6
Msa0845100 AT5G35550.1 31.387 137 73 2 20 135 10 146 8.50e-13 68.6
Msa0845100 AT2G47190.1 33.333 102 48 1 29 110 25 126 1.25e-12 68.6
Msa0845100 AT3G13890.2 36.364 99 43 1 29 107 17 115 2.24e-12 68.6
Msa0845100 AT1G25340.2 33.945 109 55 2 16 109 12 118 2.49e-12 67.8
Msa0845100 AT1G25340.3 35.417 96 47 1 29 109 23 118 2.60e-12 67.8
Msa0845100 AT4G13480.1 34.653 101 46 1 29 109 11 111 2.66e-12 67.4
Msa0845100 AT3G24310.1 34.653 101 46 1 29 109 23 123 2.69e-12 67.4
Msa0845100 AT5G40360.1 40.845 71 42 0 36 106 187 257 2.91e-12 68.2
Msa0845100 AT5G14750.1 36.036 111 50 2 29 118 21 131 3.24e-12 65.9
Msa0845100 AT5G11050.1 40.845 71 42 0 37 107 135 205 3.71e-12 68.2
Msa0845100 AT3G13890.1 40.476 84 49 1 24 107 42 124 4.06e-12 67.8
Msa0845100 AT2G25230.1 31.250 128 68 2 1 109 1 127 4.08e-12 66.2
Msa0845100 AT3G27810.1 35.644 101 45 1 29 109 25 125 4.34e-12 65.9
Msa0845100 AT4G18770.1 36.190 105 53 2 13 110 230 327 4.53e-12 68.2
Msa0845100 AT5G12870.1 32.727 110 69 1 5 109 14 123 4.91e-12 66.6
Msa0845100 AT4G32730.1 31.633 98 48 1 29 107 90 187 5.34e-12 68.6
Msa0845100 AT4G32730.5 31.633 98 48 1 29 107 90 187 5.55e-12 68.6
Msa0845100 AT4G32730.4 31.633 98 48 1 29 107 90 187 5.55e-12 68.6
Msa0845100 AT4G32730.3 31.633 98 48 1 29 107 90 187 5.55e-12 68.6
Msa0845100 AT4G32730.2 31.633 98 48 1 29 107 90 187 5.55e-12 68.6
Msa0845100 AT4G37780.1 30.496 141 67 3 29 138 17 157 6.41e-12 66.6
Msa0845100 AT4G05100.1 37.374 99 42 1 29 107 18 116 6.81e-12 67.0
Msa0845100 AT5G16770.4 34.343 99 45 1 29 107 17 115 1.04e-11 66.2
Msa0845100 AT5G16770.3 34.343 99 45 1 29 107 17 115 1.04e-11 66.2
Msa0845100 AT4G00540.2 42.254 71 41 0 37 107 136 206 1.15e-11 66.6
Msa0845100 AT1G25340.1 33.663 101 47 1 29 109 23 123 1.27e-11 65.5
Msa0845100 AT1G06180.1 33.333 102 48 1 29 110 17 118 1.36e-11 65.1
Msa0845100 AT5G16770.1 34.343 99 45 1 29 107 17 115 1.38e-11 65.9
Msa0845100 AT5G16770.2 34.343 99 45 1 29 107 17 115 1.38e-11 65.9
Msa0845100 AT5G40330.1 32.743 113 56 1 15 107 3 115 1.40e-11 64.3
Msa0845100 AT4G28110.1 35.354 99 44 1 29 107 17 115 1.41e-11 65.5
Msa0845100 AT4G00540.1 42.254 71 41 0 37 107 134 204 1.57e-11 66.6
Msa0845100 AT5G40350.1 35.714 98 43 1 29 106 22 119 1.64e-11 63.9
Msa0845100 AT1G68320.1 33.333 102 46 2 29 109 24 124 1.85e-11 65.1
Msa0845100 AT3G12720.1 31.429 105 52 1 29 113 27 131 1.99e-11 65.1
Msa0845100 AT1G57560.2 34.343 99 45 1 29 107 17 115 2.03e-11 64.7
Msa0845100 AT3G08500.1 37.755 98 56 2 17 109 38 135 2.20e-11 65.5
Msa0845100 AT1G57560.1 34.343 99 45 1 29 107 17 115 2.58e-11 65.1
Msa0845100 AT5G60890.1 35.238 105 48 1 29 113 17 121 2.72e-11 64.7
Msa0845100 AT1G22640.1 34.000 100 46 1 28 107 16 115 3.31e-11 63.9
Msa0845100 AT5G26660.2 36.585 82 47 1 37 113 9 90 3.66e-11 64.7
Msa0845100 AT1G63910.1 33.673 98 60 1 17 109 20 117 4.14e-11 64.7
Msa0845100 AT5G06100.1 33.663 101 47 1 29 109 37 137 5.17e-11 64.7
Msa0845100 AT3G30210.1 32.673 101 48 1 29 109 32 132 5.32e-11 63.5
Msa0845100 AT3G61250.1 35.354 99 44 1 29 107 17 115 6.86e-11 63.5
Msa0845100 AT5G06100.5 33.663 101 47 1 29 109 37 137 7.22e-11 64.7
Msa0845100 AT5G06100.2 33.663 101 47 1 29 109 37 137 7.22e-11 64.7
Msa0845100 AT5G06100.3 33.663 101 47 1 29 109 37 137 7.22e-11 64.7
Msa0845100 AT5G06100.4 33.663 101 47 1 29 109 37 137 7.22e-11 64.7
Msa0845100 AT1G34670.1 35.354 99 44 1 29 107 17 115 9.23e-11 63.5
Msa0845100 AT5G26660.1 31.429 105 52 1 29 113 17 121 9.39e-11 63.5
Msa0845100 AT2G31180.1 34.343 99 45 1 29 107 17 115 9.66e-11 62.4

Find 136 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGATCTTAAAGATTTAT+TGG 0.177024 5_4:-23784223 Msa0845100:CDS
TATTGAAACATAATTATAAT+TGG 0.197129 5_4:-23781490 Msa0845100:three_prime_UTR
GTATAATTCTTCAAACAAAA+AGG 0.197907 5_4:-23781372 Msa0845100:three_prime_UTR
TGATTAATGTTTATTCTATA+TGG 0.219729 5_4:+23787277 None:intergenic
TCAAGGAACATTCCTTAAAA+AGG 0.230573 5_4:-23784570 Msa0845100:CDS
GAAAGGTGGAAAATAGAAAA+AGG 0.234747 5_4:+23787700 None:intergenic
GTACTGTGTTCAGAACTTTC+TGG 0.245139 5_4:+23784047 None:intergenic
ATTGGAGTGGAAATGCATTT+TGG 0.251975 5_4:-23781472 Msa0845100:three_prime_UTR
ATTGAACATCAAAAGGAAAT+TGG 0.257602 5_4:-23783936 Msa0845100:CDS
TAGCATGCAACTTGGCTCTT+TGG 0.261090 5_4:-23787341 Msa0845100:five_prime_UTR
TGCATCAATGCGTTTATCTT+TGG 0.282509 5_4:+23784542 None:intergenic
ATTCTCGTCAGGCAAGTTAT+TGG 0.294823 5_4:+23785209 None:intergenic
AACAAAGAATCAGATGTTTC+TGG 0.302307 5_4:-23784270 Msa0845100:CDS
TTCCACCTTTCATGTGATAT+TGG 0.313934 5_4:-23787688 Msa0845100:five_prime_UTR
AAGCTATTATTCAATGGCTT+TGG 0.319440 5_4:+23787569 None:intergenic
GGTTGTGAGGGGTTGGCGAT+TGG 0.323030 5_4:+23782111 None:intergenic
AGATCTACAAGTTGTAAATC+TGG 0.324127 5_4:+23784237 None:intergenic
GTGCTTAGAGTGTCATTCTT+TGG 0.328745 5_4:-23781805 Msa0845100:three_prime_UTR
GAGAAACAACATCTGCATTC+TGG 0.329398 5_4:+23781440 None:intergenic
GAAATAGCAAAAGTGGTTTC+AGG 0.329403 5_4:-23785694 Msa0845100:CDS
TGTTTATCATATTATTATAA+AGG 0.339947 5_4:-23787379 Msa0845100:five_prime_UTR
GAATGGAATTTATGCTATTA+CGG 0.350599 5_4:-23787525 Msa0845100:five_prime_UTR
TTTATTCTATATGGTTTGTT+TGG 0.359264 5_4:+23787286 None:intergenic
AATGTTTAGTGTTCTTATTA+AGG 0.359915 5_4:+23787663 None:intergenic
TTATACAGAATATAGATAAA+TGG 0.360378 5_4:+23781389 None:intergenic
GATATATTGAGGGATCAAAT+TGG 0.361207 5_4:-23786981 Msa0845100:CDS
AGGGGTTGGCGATTGGGTTG+AGG 0.363205 5_4:+23782118 None:intergenic
TATTATAAAGGAAGAGTGTT+TGG 0.366516 5_4:-23787367 Msa0845100:five_prime_UTR
TCCGATCCAGCATTTGGTAT+TGG 0.367075 5_4:-23781746 Msa0845100:three_prime_UTR
GTTGTGAGGGGTTGGCGATT+GGG 0.369429 5_4:+23782112 None:intergenic
CTGAATGTATAATAGGTATA+TGG 0.370286 5_4:-23784087 Msa0845100:intron
TACCCCTCCTTTAGAATGTT+AGG 0.370560 5_4:-23781917 Msa0845100:three_prime_UTR
GGGGTTGGCGATTGGGTTGA+GGG 0.376843 5_4:+23782119 None:intergenic
AAACATCTGATTCTTTGTTT+CGG 0.379322 5_4:+23784274 None:intergenic
TTGAATTCTGATTTCAAGAA+AGG 0.380640 5_4:-23786415 Msa0845100:CDS
TATGGATTAAACTTGATAAG+AGG 0.390802 5_4:+23781318 None:intergenic
TGCACACTCAACAAACAAAT+AGG 0.392056 5_4:+23781557 None:intergenic
CGTGTTCGTTCTTCTCATCC+TGG 0.392092 5_4:-23781986 Msa0845100:three_prime_UTR
CTCTCTAACTTTATTGAAAA+CGG 0.395931 5_4:+23787879 None:intergenic
GATTCTTTCTAGTGCAACTT+TGG 0.397051 5_4:-23783898 Msa0845100:CDS
TGTTTCTCTTCTATCTAACT+TGG 0.398934 5_4:-23781425 Msa0845100:three_prime_UTR
TATAGTGGTATGATATTGAT+AGG 0.408791 5_4:-23788073 None:intergenic
ATTCATATTAACTTTGTAGC+AGG 0.408846 5_4:+23782070 None:intergenic
TCTAGTGCAACTTTGGATCA+AGG 0.425878 5_4:-23783891 Msa0845100:intron
CTTTCTGAAAATTGTGGACT+AGG 0.438291 5_4:+23783082 None:intergenic
TTGGCGATTGGGTTGAGGGA+TGG 0.440478 5_4:+23782123 None:intergenic
GTCTGCAATGTGAAGTTTAG+TGG 0.448535 5_4:-23785183 Msa0845100:CDS
TGAATGAAAGAGAAAGAAGA+AGG 0.451495 5_4:-23787452 Msa0845100:five_prime_UTR
AGGGATCAAATTGGAATCCA+TGG 0.454152 5_4:-23786972 Msa0845100:CDS
AATGTGAAGTTTAGTGGTTA+TGG 0.455267 5_4:-23785177 Msa0845100:intron
CACTCACTGCATCAAGATAG+TGG 0.456480 5_4:-23783981 Msa0845100:CDS
TCATGAAAGGTAATATTCCT+AGG 0.457448 5_4:+23781848 None:intergenic
CCTTATGAAAACACTTGGAA+TGG 0.460913 5_4:-23782151 Msa0845100:CDS
CAGCTAAGGATCTGAACATA+GGG 0.469480 5_4:+23783113 None:intergenic
CTTACACTTTCTGAAAATTG+TGG 0.471445 5_4:+23783076 None:intergenic
GCTCAAAACAACAAGATTCA+AGG 0.472074 5_4:-23784587 Msa0845100:CDS
TATACAAATTGAACATCAAA+AGG 0.474286 5_4:-23783943 Msa0845100:CDS
TTGCAATGTGGCGGTTGTGA+GGG 0.474581 5_4:+23782099 None:intergenic
GACACTGTTAAATATGTTGA+AGG 0.476366 5_4:+23781881 None:intergenic
TGCAGGAGGATGATATATTG+AGG 0.481794 5_4:-23786992 Msa0845100:intron
TTCATTATATGTAGTACGAT+TGG 0.482214 5_4:+23781648 None:intergenic
AACTTCCTTATGAAAACACT+TGG 0.487445 5_4:-23782156 Msa0845100:CDS
TGAAACTTCAAGAGCACCAT+TGG 0.489088 5_4:-23785259 Msa0845100:CDS
ATGGATTAAACTTGATAAGA+GGG 0.492535 5_4:+23781319 None:intergenic
AACAAACCAATACCAAATGC+TGG 0.493171 5_4:+23781740 None:intergenic
ACACGAATTCAAATAACAAA+AGG 0.494406 5_4:-23785481 Msa0845100:CDS
GATGGTCGCGGTGAGGAGAA+AGG 0.509060 5_4:+23782012 None:intergenic
TTGCAGACATGATTCTCGTC+AGG 0.509271 5_4:+23785198 None:intergenic
CATAAGAGCATGTCTTCCTC+TGG 0.520406 5_4:+23786382 None:intergenic
TTCATATTAACTTTGTAGCA+GGG 0.525473 5_4:+23782071 None:intergenic
ACTACTATGCCTCATTGTCC+TGG 0.525806 5_4:-23784017 Msa0845100:CDS
AAACATAATTATAATTGGAG+TGG 0.526830 5_4:-23781485 Msa0845100:three_prime_UTR
ATGTGGCGGTTGTGAGGGGT+TGG 0.529770 5_4:+23782104 None:intergenic
GAATGAAAGAGAAAGAAGAA+GGG 0.530129 5_4:-23787451 Msa0845100:five_prime_UTR
ACCAAAGTCTTGAAAATGCA+TGG 0.532196 5_4:-23784466 Msa0845100:CDS
GTGGACAGAAATAGCAAAAG+TGG 0.532453 5_4:-23785701 Msa0845100:CDS
GTGAGGAAATTCAGCCATGT+TGG 0.532834 5_4:-23784182 Msa0845100:CDS
GAATGTACCTAACATTCTAA+AGG 0.533989 5_4:+23781910 None:intergenic
AGAAGAACGAACACGCGAGA+TGG 0.535700 5_4:+23781994 None:intergenic
ACTCTAAGCACGCTAACCTT+CGG 0.538712 5_4:+23781817 None:intergenic
GCAGCTAAGGATCTGAACAT+AGG 0.539437 5_4:+23783112 None:intergenic
AAAAGTTGATGCAGAGAACA+TGG 0.540847 5_4:-23784489 Msa0845100:CDS
ATGTTCAGATCCTTAGCTGC+GGG 0.542304 5_4:-23783109 Msa0845100:CDS
CAATGAAGAATCTAAGAAGA+AGG 0.543808 5_4:-23787211 Msa0845100:CDS
ACTAGGAATTCCCGCAGCTA+AGG 0.546829 5_4:+23783099 None:intergenic
GACGACTACTATCACGCAGC+AGG 0.550419 5_4:+23781700 None:intergenic
TTTGTTTGTTGAGTGTGCAT+AGG 0.550788 5_4:-23781553 Msa0845100:three_prime_UTR
TTTGGCTTTAGCATGCAACT+TGG 0.554529 5_4:-23787349 Msa0845100:five_prime_UTR
ACCAATACCAAATGCTGGAT+CGG 0.555668 5_4:+23781745 None:intergenic
CATGAAAGGTAATATTCCTA+GGG 0.555758 5_4:+23781849 None:intergenic
AATTCTGATTTCAAGAAAGG+AGG 0.558222 5_4:-23786412 Msa0845100:CDS
TAACATTCTAAAGGAGGGGT+AGG 0.560101 5_4:+23781919 None:intergenic
AGGAAATTCAGCCATGTTGG+AGG 0.560481 5_4:-23784179 Msa0845100:intron
TAGCAAAAGTGGTTTCAGGC+AGG 0.561291 5_4:-23785690 Msa0845100:intron
AGATTCTTGTACCTGTGTGA+AGG 0.561596 5_4:+23787816 None:intergenic
ATTGCAATCTTTCTCAAACC+AGG 0.562762 5_4:+23781968 None:intergenic
TATGATATTGATAGGAGTAG+TGG 0.564084 5_4:-23788065 None:intergenic
GAAGAACAGATAAACAATGA+TGG 0.570586 5_4:-23783187 Msa0845100:CDS
GCAGGAGGATGATATATTGA+GGG 0.572036 5_4:-23786991 Msa0845100:intron
AACATAGGGGTAACTTGAAG+AGG 0.572068 5_4:+23783127 None:intergenic
AAGTCTTGAAAATGCATGGA+AGG 0.572703 5_4:-23784462 Msa0845100:intron
CAGATTCTGATGCTTCGTCT+CGG 0.573136 5_4:+23785450 None:intergenic
TACCTAACATTCTAAAGGAG+GGG 0.584091 5_4:+23781915 None:intergenic
TTCGGTGCTAGTATCATGAA+AGG 0.584220 5_4:+23781835 None:intergenic
GAAAGTTCTGAACACAGTAC+AGG 0.585494 5_4:-23784044 Msa0845100:CDS
GTACCTAACATTCTAAAGGA+GGG 0.586530 5_4:+23781914 None:intergenic
ACTGAACTCTGCACTTGACA+AGG 0.588145 5_4:+23783153 None:intergenic
ATATGATTATGTTAGTGCGC+GGG 0.588755 5_4:+23787987 None:intergenic
CATTGTCACGTGGACTCAAG+AGG 0.590009 5_4:-23787181 Msa0845100:intron
TGCAATGTGGCGGTTGTGAG+GGG 0.592894 5_4:+23782100 None:intergenic
AGGAACCAATATCACATGAA+AGG 0.593940 5_4:+23787683 None:intergenic
TTTGCAATGTGGCGGTTGTG+AGG 0.598610 5_4:+23782098 None:intergenic
ATAGGCATCATATTTGCCAC+TGG 0.598718 5_4:+23781575 None:intergenic
TGTACCTAACATTCTAAAGG+AGG 0.599609 5_4:+23781913 None:intergenic
AGAATGTTAGGTACATTCTG+AGG 0.600092 5_4:-23781905 Msa0845100:three_prime_UTR
AGACTTGAAGAATAATAGTG+AGG 0.601359 5_4:-23784199 Msa0845100:CDS
AACCAATATCACATGAAAGG+TGG 0.601687 5_4:+23787686 None:intergenic
ACGAACACGCGAGATGGTCG+CGG 0.604580 5_4:+23782000 None:intergenic
ACATAGGGGTAACTTGAAGA+GGG 0.605311 5_4:+23783128 None:intergenic
TTTCATGATACTAGCACCGA+AGG 0.607979 5_4:-23781833 Msa0845100:three_prime_UTR
CTGATTTCAAGAAAGGAGGA+TGG 0.615740 5_4:-23786408 Msa0845100:CDS
AACATAAAGTACCTCCAACA+TGG 0.620527 5_4:+23784168 None:intergenic
AAAGGTAATATTCCTAGGGG+AGG 0.621784 5_4:+23781853 None:intergenic
GAGTGTTCTAAATTCTCACC+AGG 0.622031 5_4:+23783999 None:intergenic
CACGCGAGATGGTCGCGGTG+AGG 0.622223 5_4:+23782005 None:intergenic
CATCTTGAGTGTGTATACAA+TGG 0.635964 5_4:-23781678 Msa0845100:three_prime_UTR
AAATTCTCACCAGGACAATG+AGG 0.636006 5_4:+23784008 None:intergenic
AACACAATACATACAGTGAG+AGG 0.636372 5_4:-23787485 Msa0845100:five_prime_UTR
GGAAGACATGCTCTTATGTG+AGG 0.642215 5_4:-23786377 Msa0845100:intron
TATATGATTATGTTAGTGCG+CGG 0.655536 5_4:+23787986 None:intergenic
TATGTTCAGATCCTTAGCTG+CGG 0.665978 5_4:-23783110 Msa0845100:CDS
GAAAGGAGGATGGTCACCAG+AGG 0.668385 5_4:-23786398 Msa0845100:CDS
CATAGGGGTAACTTGAAGAG+GGG 0.695434 5_4:+23783129 None:intergenic
ATGAAAGGTAATATTCCTAG+GGG 0.718576 5_4:+23781850 None:intergenic
AGGAGCGTCACATTGTCACG+TGG 0.726630 5_4:-23787191 Msa0845100:CDS
AGCTAAGGATCTGAACATAG+GGG 0.729667 5_4:+23783114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAACAAACAAAAA+AGG + chr5_4:23781972-23781991 None:intergenic 10.0%
!! TGTTTATCATATTATTATAA+AGG - chr5_4:23782012-23782031 Msa0845100:three_prime_UTR 10.0%
!! AATAATTAACCATTTAAATT+TGG + chr5_4:23786036-23786055 None:intergenic 10.0%
!!! ATAAAAGATTTTATCTTTTA+AGG + chr5_4:23786095-23786114 None:intergenic 10.0%
!!! TTTCTTATTTTTATTTTTTC+AGG - chr5_4:23787207-23787226 Msa0845100:CDS 10.0%
!! TATTGAAACATAATTATAAT+TGG - chr5_4:23787901-23787920 Msa0845100:five_prime_UTR 10.0%
!! TGATTAATGTTTATTCTATA+TGG + chr5_4:23782117-23782136 None:intergenic 15.0%
!!! GTGAAGTTTTTTTAAAATTT+CGG - chr5_4:23782809-23782828 Msa0845100:intron 15.0%
!! AAAGAATAATACAAAAAAAC+TGG + chr5_4:23782872-23782891 None:intergenic 15.0%
!!! AGTTTTTTTGTATTATTCTT+TGG - chr5_4:23782871-23782890 Msa0845100:intron 15.0%
!! AGAAATAACAATAAAAAAGA+AGG + chr5_4:23782915-23782934 None:intergenic 15.0%
!! TTTACAAAATGAAAATATTG+TGG + chr5_4:23784596-23784615 None:intergenic 15.0%
!!! TTCACAATTTTCATAAATAT+AGG + chr5_4:23785027-23785046 None:intergenic 15.0%
!!! ATTTATCAATATTTTAAACC+TGG + chr5_4:23785930-23785949 None:intergenic 15.0%
!! ATTTAAATTTGGTTAAAAAG+TGG + chr5_4:23786025-23786044 None:intergenic 15.0%
!!! ACTTTTTAACCAAATTTAAA+TGG - chr5_4:23786024-23786043 Msa0845100:intron 15.0%
!! AGTAATAATATGACAAATTA+TGG - chr5_4:23786421-23786440 Msa0845100:CDS 15.0%
!!! AATTAACATAATTTGCATAT+TGG - chr5_4:23786840-23786859 Msa0845100:intron 15.0%
!! TCATGTTACTAAAAAAAAAA+GGG - chr5_4:23786878-23786897 Msa0845100:intron 15.0%
!!! ATATTTTCCTTATAAAACTA+AGG + chr5_4:23787107-23787126 None:intergenic 15.0%
!!! AAATTTAAGTCTTTTAAACA+AGG - chr5_4:23787156-23787175 Msa0845100:intron 15.0%
!!! AATTTAAGTCTTTTAAACAA+GGG - chr5_4:23787157-23787176 Msa0845100:intron 15.0%
!! AATAAAAATAAGAAATGTCA+GGG + chr5_4:23787202-23787221 None:intergenic 15.0%
!! AAATAAAAATAAGAAATGTC+AGG + chr5_4:23787203-23787222 None:intergenic 15.0%
!!! TATTTTTATTTTTTCAGGAA+AGG - chr5_4:23787212-23787231 Msa0845100:CDS 15.0%
!!! AAATAATTCTTTTCCTTTTT+TGG - chr5_4:23787870-23787889 Msa0845100:five_prime_UTR 15.0%
!! TTATACAGAATATAGATAAA+TGG + chr5_4:23788005-23788024 None:intergenic 15.0%
!! TATAATTCTTCAAACAAAAA+GGG - chr5_4:23788020-23788039 Msa0845100:five_prime_UTR 15.0%
!! TATAAAAAATGTGTAGTGTA+GGG + chr5_4:23781466-23781485 None:intergenic 20.0%
!!! AAATACATATTTTGATGAAG+TGG + chr5_4:23781663-23781682 None:intergenic 20.0%
!! AATGTTTAGTGTTCTTATTA+AGG + chr5_4:23781731-23781750 None:intergenic 20.0%
!! ACAAAAAAGCTATTATTCAA+TGG + chr5_4:23781831-23781850 None:intergenic 20.0%
!!! GAATAATAGCTTTTTTGTTA+AGG - chr5_4:23781833-23781852 Msa0845100:three_prime_UTR 20.0%
!!! TTTATTCTATATGGTTTGTT+TGG + chr5_4:23782108-23782127 None:intergenic 20.0%
!! AGTAGTAACAATATCAAAAA+GGG + chr5_4:23782465-23782484 None:intergenic 20.0%
!! TAGTAGTAACAATATCAAAA+AGG + chr5_4:23782466-23782485 None:intergenic 20.0%
!! AATAATTGCTTCTAAATTCA+AGG - chr5_4:23782758-23782777 Msa0845100:intron 20.0%
!!! AGAAGCTTATTTTATAATAG+TGG - chr5_4:23783304-23783323 Msa0845100:intron 20.0%
!! AGAAAGAAAGAAAAACAAAA+AGG + chr5_4:23783364-23783383 None:intergenic 20.0%
!! ATCTATGTTATAGTAAGATT+TGG - chr5_4:23783563-23783582 Msa0845100:intron 20.0%
!! CTCAAAAAATATTTGGAAAT+AGG - chr5_4:23783668-23783687 Msa0845100:intron 20.0%
!! AAAAAATATTTGGAAATAGG+TGG - chr5_4:23783671-23783690 Msa0845100:intron 20.0%
!! TTGTTTAATTGTACCAAATT+TGG - chr5_4:23784390-23784409 Msa0845100:intron 20.0%
!! TTAGACAAAATACATAATTG+TGG + chr5_4:23784560-23784579 None:intergenic 20.0%
!!! GGTAATTTTTGTAACTTTTT+TGG - chr5_4:23784674-23784693 Msa0845100:intron 20.0%
!! TTGACATATATTCTATACTT+TGG + chr5_4:23784979-23784998 None:intergenic 20.0%
!! TGTAGATCTTAAAGATTTAT+TGG - chr5_4:23785168-23785187 Msa0845100:intron 20.0%
!! TATACAAATTGAACATCAAA+AGG - chr5_4:23785448-23785467 Msa0845100:CDS 20.0%
!!! CTGATATTTTTTTATCAATC+TGG + chr5_4:23785661-23785680 None:intergenic 20.0%
!!! TTAAGGAAACTGAAATTTTT+TGG + chr5_4:23786078-23786097 None:intergenic 20.0%
!! GTCATGTTACTAAAAAAAAA+AGG - chr5_4:23786877-23786896 Msa0845100:intron 20.0%
!! AAACATAATTATAATTGGAG+TGG - chr5_4:23787906-23787925 Msa0845100:five_prime_UTR 20.0%
!! GTATAATTCTTCAAACAAAA+AGG - chr5_4:23788019-23788038 Msa0845100:five_prime_UTR 20.0%
! GTATAAAAAATGTGTAGTGT+AGG + chr5_4:23781467-23781486 None:intergenic 25.0%
! CTCTCTAACTTTATTGAAAA+CGG + chr5_4:23781515-23781534 None:intergenic 25.0%
! GGAAAAAAAACTGATATGTT+TGG + chr5_4:23781557-23781576 None:intergenic 25.0%
! AAAGGTGGAAAATAGAAAAA+GGG + chr5_4:23781693-23781712 None:intergenic 25.0%
! GAATGGAATTTATGCTATTA+CGG - chr5_4:23781866-23781885 Msa0845100:three_prime_UTR 25.0%
!!! TATTATAAAGGAAGAGTGTT+TGG - chr5_4:23782024-23782043 Msa0845100:three_prime_UTR 25.0%
! TTTATGATTATCATTCCGTT+TGG - chr5_4:23782489-23782508 Msa0845100:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr5_4:23782682-23782701 None:intergenic 25.0%
!!! TTATGTTGATTCATAAGTTC+TGG - chr5_4:23782564-23782583 Msa0845100:intron 25.0%
! TTTAAGTGACTTATTTCAGA+TGG - chr5_4:23782944-23782963 Msa0845100:intron 25.0%
! TTGAATTCTGATTTCAAGAA+AGG - chr5_4:23782976-23782995 Msa0845100:intron 25.0%
!! GATTGTCATTGGAATTATTT+TGG - chr5_4:23783082-23783101 Msa0845100:CDS 25.0%
! CATTTATGTATTTAGTGTGT+GGG - chr5_4:23783412-23783431 Msa0845100:intron 25.0%
! ATTTATGTATTTAGTGTGTG+GGG - chr5_4:23783413-23783432 Msa0845100:intron 25.0%
!! CAAAACAAATGACTTTTCAT+CGG + chr5_4:23783536-23783555 None:intergenic 25.0%
! CTTTAGGCTCAAAAAATATT+TGG - chr5_4:23783661-23783680 Msa0845100:intron 25.0%
! ACACGAATTCAAATAACAAA+AGG - chr5_4:23783910-23783929 Msa0845100:CDS 25.0%
!! TTTTGCCTAATAATTAGTGA+AGG + chr5_4:23784352-23784371 None:intergenic 25.0%
! AAAAAATTGAAGGCCAAATT+TGG + chr5_4:23784406-23784425 None:intergenic 25.0%
!!! ATTTGGCCTTCAATTTTTTT+TGG - chr5_4:23784407-23784426 Msa0845100:intron 25.0%
!!! ATACATGTGTATTTTTGTAG+CGG - chr5_4:23784475-23784494 Msa0845100:CDS 25.0%
!! AAACATCTGATTCTTTGTTT+CGG + chr5_4:23785120-23785139 None:intergenic 25.0%
! AAAATAGAATAACTTTCACG+AGG - chr5_4:23785258-23785277 Msa0845100:CDS 25.0%
! AAATAGAATAACTTTCACGA+GGG - chr5_4:23785259-23785278 Msa0845100:CDS 25.0%
! ATAGCTTCTGAATGTATAAT+AGG - chr5_4:23785297-23785316 Msa0845100:CDS 25.0%
! CTGAATGTATAATAGGTATA+TGG - chr5_4:23785304-23785323 Msa0845100:CDS 25.0%
! ATTGAACATCAAAAGGAAAT+TGG - chr5_4:23785455-23785474 Msa0845100:CDS 25.0%
!!! ACACTGATATTTTTTATCAC+TGG + chr5_4:23785540-23785559 None:intergenic 25.0%
!!! ATCAATATTTTAAACCTGGA+CGG + chr5_4:23785926-23785945 None:intergenic 25.0%
!! CTATCTTTGTTACAACTTTT+AGG + chr5_4:23786453-23786472 None:intergenic 25.0%
! TTAGTAATGTTGTTAGATAG+TGG - chr5_4:23786576-23786595 Msa0845100:intron 25.0%
! TCGTGAAAACAGTAATAATT+TGG - chr5_4:23786763-23786782 Msa0845100:intron 25.0%
! ATTTCATCATTAACATGAGT+TGG - chr5_4:23786948-23786967 Msa0845100:intron 25.0%
! TTTCATCATTAACATGAGTT+GGG - chr5_4:23786949-23786968 Msa0845100:intron 25.0%
! AGATAGTTATGTAACTTCAT+AGG - chr5_4:23787003-23787022 Msa0845100:intron 25.0%
! AGTATATCATGTAACTAAAC+AGG - chr5_4:23787069-23787088 Msa0845100:intron 25.0%
!!! AACAGATCCTTAGTTTTATA+AGG - chr5_4:23787097-23787116 Msa0845100:intron 25.0%
! TTCATATTAACTTTGTAGCA+GGG + chr5_4:23787323-23787342 None:intergenic 25.0%
! ATTCATATTAACTTTGTAGC+AGG + chr5_4:23787324-23787343 None:intergenic 25.0%
!!! GTTCAGCCTAAAATTTTAAT+AGG - chr5_4:23787449-23787468 Msa0845100:five_prime_UTR 25.0%
!! TGTTTTCTTTGATATCTTTC+TGG - chr5_4:23787611-23787630 Msa0845100:five_prime_UTR 25.0%
!! GTTTTCTTTGATATCTTTCT+GGG - chr5_4:23787612-23787631 Msa0845100:five_prime_UTR 25.0%
! TTCATTATATGTAGTACGAT+TGG + chr5_4:23787746-23787765 None:intergenic 25.0%
! CAATACATAAGAACCAAAAA+AGG + chr5_4:23787886-23787905 None:intergenic 25.0%
TATATGATTATGTTAGTGCG+CGG + chr5_4:23781408-23781427 None:intergenic 30.0%
GAAAGGTGGAAAATAGAAAA+AGG + chr5_4:23781694-23781713 None:intergenic 30.0%
!!! GTTCTGTTTTTGTTCTGTTT+TGG - chr5_4:23781751-23781770 Msa0845100:three_prime_UTR 30.0%
AAGCTATTATTCAATGGCTT+TGG + chr5_4:23781825-23781844 None:intergenic 30.0%
!!! ATACAGTGAGAGGTTTTAAA+AGG - chr5_4:23781916-23781935 Msa0845100:three_prime_UTR 30.0%
TGAATGAAAGAGAAAGAAGA+AGG - chr5_4:23781939-23781958 Msa0845100:three_prime_UTR 30.0%
GAATGAAAGAGAAAGAAGAA+GGG - chr5_4:23781940-23781959 Msa0845100:three_prime_UTR 30.0%
CAATGAAGAATCTAAGAAGA+AGG - chr5_4:23782180-23782199 Msa0845100:intron 30.0%
GATATATTGAGGGATCAAAT+TGG - chr5_4:23782410-23782429 Msa0845100:intron 30.0%
! ATTAGTACTTTTCAGTTCCA+TGG + chr5_4:23782439-23782458 None:intergenic 30.0%
!! ATTCATAAGTTCTGGAGTAA+CGG - chr5_4:23782572-23782591 Msa0845100:intron 30.0%
TTTCAATAACTCAATGCAGT+TGG - chr5_4:23782733-23782752 Msa0845100:intron 30.0%
TTCAATAACTCAATGCAGTT+GGG - chr5_4:23782734-23782753 Msa0845100:intron 30.0%
AATTCTGATTTCAAGAAAGG+AGG - chr5_4:23782979-23782998 Msa0845100:intron 30.0%
!! AAGTGAGTCTTTGAAACATA+GGG + chr5_4:23783051-23783070 None:intergenic 30.0%
!! AAAGTGAGTCTTTGAAACAT+AGG + chr5_4:23783052-23783071 None:intergenic 30.0%
TAATTCCAATGACAATCACA+TGG + chr5_4:23783079-23783098 None:intergenic 30.0%
! TTTCTTTCTTTCTTTTCCCT+CGG - chr5_4:23783371-23783390 Msa0845100:intron 30.0%
CCACACACTAAATACATAAA+TGG + chr5_4:23783414-23783433 None:intergenic 30.0%
CCATTTATGTATTTAGTGTG+TGG - chr5_4:23783411-23783430 Msa0845100:intron 30.0%
AAACTAAACGTGCACTTAAA+GGG - chr5_4:23783504-23783523 Msa0845100:intron 30.0%
!! GTTCTTGCTATTATCTCTTT+AGG - chr5_4:23783645-23783664 Msa0845100:intron 30.0%
TATTTGCTTTGTATGCAGAA+CGG - chr5_4:23783803-23783822 Msa0845100:intron 30.0%
! AATGTTGTTCTCTTTTGCTA+AGG + chr5_4:23783886-23783905 None:intergenic 30.0%
!! CAGTAGATTTTAAGAAGATG+AGG - chr5_4:23783964-23783983 Msa0845100:CDS 30.0%
!! ATGTCATCGACTTGTAATAT+AGG - chr5_4:23784047-23784066 Msa0845100:CDS 30.0%
AATGTGAAGTTTAGTGGTTA+TGG - chr5_4:23784214-23784233 Msa0845100:CDS 30.0%
AATGTGTAGAAAAAGGGTAA+CGG - chr5_4:23784498-23784517 Msa0845100:CDS 30.0%
TTACTATAGTAGAGGATGTT+TGG + chr5_4:23784722-23784741 None:intergenic 30.0%
TAGTAAGCCAGAAATAACTT+CGG - chr5_4:23784736-23784755 Msa0845100:intron 30.0%
TCAAGGAACATTCCTTAAAA+AGG - chr5_4:23784821-23784840 Msa0845100:intron 30.0%
! TCTTTGGATCATCCTTTTTA+AGG + chr5_4:23784836-23784855 None:intergenic 30.0%
TCATAAACTCTTGAAGAATC+TGG + chr5_4:23785096-23785115 None:intergenic 30.0%
AACAAAGAATCAGATGTTTC+TGG - chr5_4:23785121-23785140 Msa0845100:intron 30.0%
AGATCTACAAGTTGTAAATC+TGG + chr5_4:23785157-23785176 None:intergenic 30.0%
AGACTTGAAGAATAATAGTG+AGG - chr5_4:23785192-23785211 Msa0845100:CDS 30.0%
CAGATTAACTGCTTAAAACA+CGG - chr5_4:23785776-23785795 Msa0845100:intron 30.0%
GTTTAATGGTTCAATAGGTT+CGG + chr5_4:23785880-23785899 None:intergenic 30.0%
! GGCTACAGATTAAACATTTT+TGG + chr5_4:23786004-23786023 None:intergenic 30.0%
GAAGAACAGATAAACAATGA+TGG - chr5_4:23786204-23786223 Msa0845100:intron 30.0%
! CTTACACTTTCTGAAAATTG+TGG + chr5_4:23786318-23786337 None:intergenic 30.0%
CATTACTAAATAGCTTATCG+CGG + chr5_4:23786565-23786584 None:intergenic 30.0%
!! TAGAACAACTTCAGTTTTAG+TGG - chr5_4:23786716-23786735 Msa0845100:intron 30.0%
AAATCTTAAGCTCAATGCAT+AGG + chr5_4:23786802-23786821 None:intergenic 30.0%
! TTGCATATTGGATTAGACTA+AGG - chr5_4:23786852-23786871 Msa0845100:intron 30.0%
! AGTTGATGCAGATAAAATCT+AGG - chr5_4:23786906-23786925 Msa0845100:intron 30.0%
AACTTCCTTATGAAAACACT+TGG - chr5_4:23787235-23787254 Msa0845100:CDS 30.0%
! GGTAGGCCTATTAAAATTTT+AGG + chr5_4:23787458-23787477 None:intergenic 30.0%
GAATGTACCTAACATTCTAA+AGG + chr5_4:23787484-23787503 None:intergenic 30.0%
GACACTGTTAAATATGTTGA+AGG + chr5_4:23787513-23787532 None:intergenic 30.0%
ATGAAAGGTAATATTCCTAG+GGG + chr5_4:23787544-23787563 None:intergenic 30.0%
CATGAAAGGTAATATTCCTA+GGG + chr5_4:23787545-23787564 None:intergenic 30.0%
TCATGAAAGGTAATATTCCT+AGG + chr5_4:23787546-23787565 None:intergenic 30.0%
TGTTTCTCTTCTATCTAACT+TGG - chr5_4:23787966-23787985 Msa0845100:five_prime_UTR 30.0%
ATATGATTATGTTAGTGCGC+GGG + chr5_4:23781407-23781426 None:intergenic 35.0%
!!! CAGTTTTTTTTCCTTCACAC+AGG - chr5_4:23781564-23781583 Msa0845100:three_prime_UTR 35.0%
GAAGTGGTAGATCTAAAAAG+TGG + chr5_4:23781647-23781666 None:intergenic 35.0%
TTCCACCTTTCATGTGATAT+TGG - chr5_4:23781703-23781722 Msa0845100:three_prime_UTR 35.0%
AACCAATATCACATGAAAGG+TGG + chr5_4:23781708-23781727 None:intergenic 35.0%
AGGAACCAATATCACATGAA+AGG + chr5_4:23781711-23781730 None:intergenic 35.0%
!! GTTAAGGTAGCTTTTGAGAA+TGG - chr5_4:23781849-23781868 Msa0845100:three_prime_UTR 35.0%
AACACAATACATACAGTGAG+AGG - chr5_4:23781906-23781925 Msa0845100:three_prime_UTR 35.0%
!! TGTTATGTTCTTTGAGTTGC+AGG - chr5_4:23782382-23782401 Msa0845100:intron 35.0%
AGTCTTACATACAGCTCATT+TGG + chr5_4:23782700-23782719 None:intergenic 35.0%
TGAGCTGTATGTAAGACTAA+AGG - chr5_4:23782702-23782721 Msa0845100:intron 35.0%
GAGCTGTATGTAAGACTAAA+GGG - chr5_4:23782703-23782722 Msa0845100:intron 35.0%
TCATACCATGTGATTGTCAT+TGG - chr5_4:23783071-23783090 Msa0845100:intron 35.0%
GATTACCAGATACAGTGTTA+AGG + chr5_4:23783108-23783127 None:intergenic 35.0%
TAACACTGTATCTGGTAATC+CGG - chr5_4:23783108-23783127 Msa0845100:CDS 35.0%
ACTAGGCTTTACTTATCTTC+CGG + chr5_4:23783141-23783160 None:intergenic 35.0%
! GATTATCAGTGTCTGAAACT+AGG + chr5_4:23783158-23783177 None:intergenic 35.0%
AGTTTCAGACACTGATAATC+CGG - chr5_4:23783158-23783177 Msa0845100:CDS 35.0%
CTTATCTTCTGATCAAACTC+CGG + chr5_4:23783180-23783199 None:intergenic 35.0%
GCTCATTAAGTACTTGATGT+TGG - chr5_4:23783219-23783238 Msa0845100:intron 35.0%
AAGTACTTGATGTTGGAACT+CGG - chr5_4:23783226-23783245 Msa0845100:intron 35.0%
GTTCATTAACCACTTGATGT+TGG - chr5_4:23783275-23783294 Msa0845100:intron 35.0%
TCTTAAACTCCAACATCAAG+TGG + chr5_4:23783287-23783306 None:intergenic 35.0%
!! TTTCACTTTTGCACGAGATA+GGG + chr5_4:23783487-23783506 None:intergenic 35.0%
GAAACTAAACGTGCACTTAA+AGG - chr5_4:23783503-23783522 Msa0845100:intron 35.0%
GAAATAGCAAAAGTGGTTTC+AGG - chr5_4:23783697-23783716 Msa0845100:intron 35.0%
! TTTTGCACAATGTGGAGAAA+CGG + chr5_4:23783845-23783864 None:intergenic 35.0%
!! TCATCGACTTGTAATATAGG+AGG - chr5_4:23784050-23784069 Msa0845100:CDS 35.0%
! TGATCTTTTCTGCATCATCA+GGG + chr5_4:23784084-23784103 None:intergenic 35.0%
! TTTTGAGCTATAACTGCCAA+TGG + chr5_4:23784151-23784170 None:intergenic 35.0%
GCGTTCCTTCACTAATTATT+AGG - chr5_4:23784344-23784363 Msa0845100:intron 35.0%
!!! AATTTTTTTTGGTCCCGCAT+AGG - chr5_4:23784418-23784437 Msa0845100:intron 35.0%
AAGACTTAAAAGACCTATGC+GGG + chr5_4:23784434-23784453 None:intergenic 35.0%
CAAGACTTAAAAGACCTATG+CGG + chr5_4:23784435-23784454 None:intergenic 35.0%
TAGCGGAATGTGTAGAAAAA+GGG - chr5_4:23784492-23784511 Msa0845100:CDS 35.0%
GTACACGTTGTAGAACTTAA+AGG - chr5_4:23784522-23784541 Msa0845100:CDS 35.0%
AGAACTTAAAGGACCTATGT+AGG - chr5_4:23784533-23784552 Msa0845100:CDS 35.0%
ACATAATTGTGGTCCTACAT+AGG + chr5_4:23784549-23784568 None:intergenic 35.0%
!! TTTCTGGCTTACTATAGTAG+AGG + chr5_4:23784730-23784749 None:intergenic 35.0%
! AGAATGTCCGAAGTTATTTC+TGG + chr5_4:23784746-23784765 None:intergenic 35.0%
!!! CTTGTTGTTTTGAGCTGTAA+AGG + chr5_4:23784799-23784818 None:intergenic 35.0%
GCTCAAAACAACAAGATTCA+AGG - chr5_4:23784804-23784823 Msa0845100:intron 35.0%
TGCATCAATGCGTTTATCTT+TGG + chr5_4:23784852-23784871 None:intergenic 35.0%
!! AAAAGTTGATGCAGAGAACA+TGG - chr5_4:23784902-23784921 Msa0845100:intron 35.0%
ACCAAAGTCTTGAAAATGCA+TGG - chr5_4:23784925-23784944 Msa0845100:intron 35.0%
!! TCCATGCATTTTCAAGACTT+TGG + chr5_4:23784929-23784948 None:intergenic 35.0%
AAGTCTTGAAAATGCATGGA+AGG - chr5_4:23784929-23784948 Msa0845100:intron 35.0%
! AACATAAAGTACCTCCAACA+TGG + chr5_4:23785226-23785245 None:intergenic 35.0%
! GATTCTTTCTAGTGCAACTT+TGG - chr5_4:23785493-23785512 Msa0845100:CDS 35.0%
! AAACCAAACAGTTTTCCTGT+TGG - chr5_4:23785604-23785623 Msa0845100:intron 35.0%
AATCAGAATGCAATGTAACC+AGG + chr5_4:23785635-23785654 None:intergenic 35.0%
!! CGTGTTTTAAGCAGTTAATC+TGG + chr5_4:23785778-23785797 None:intergenic 35.0%
TTAACTGCTTAAAACACGGT+TGG - chr5_4:23785780-23785799 Msa0845100:intron 35.0%
CCTCAGTTTAATGGTTCAAT+AGG + chr5_4:23785885-23785904 None:intergenic 35.0%
CCTATTGAACCATTAAACTG+AGG - chr5_4:23785882-23785901 Msa0845100:intron 35.0%
!!! TTTTTTAGTAACCAGTCTCC+TGG - chr5_4:23785967-23785986 Msa0845100:intron 35.0%
!! TTTTTAGTAACCAGTCTCCT+GGG - chr5_4:23785968-23785987 Msa0845100:intron 35.0%
!!! TTTTTGGAACGTATTTACCC+AGG + chr5_4:23785988-23786007 None:intergenic 35.0%
! CTTTCTGAAAATTGTGGACT+AGG + chr5_4:23786312-23786331 None:intergenic 35.0%
!! GAAAGTTTTGCTGCTGATTA+AGG + chr5_4:23786680-23786699 None:intergenic 35.0%
!! AACAACTTCAGTTTTAGTGG+TGG - chr5_4:23786719-23786738 Msa0845100:intron 35.0%
!! ACAACTTCAGTTTTAGTGGT+GGG - chr5_4:23786720-23786739 Msa0845100:intron 35.0%
! CCATTCCAAGTGTTTTCATA+AGG + chr5_4:23787243-23787262 None:intergenic 35.0%
CCTTATGAAAACACTTGGAA+TGG - chr5_4:23787240-23787259 Msa0845100:CDS 35.0%
ATTGCAATCTTTCTCAAACC+AGG + chr5_4:23787426-23787445 None:intergenic 35.0%
! TACCTAACATTCTAAAGGAG+GGG + chr5_4:23787479-23787498 None:intergenic 35.0%
! GTACCTAACATTCTAAAGGA+GGG + chr5_4:23787480-23787499 None:intergenic 35.0%
! TGTACCTAACATTCTAAAGG+AGG + chr5_4:23787481-23787500 None:intergenic 35.0%
AGAATGTTAGGTACATTCTG+AGG - chr5_4:23787486-23787505 Msa0845100:five_prime_UTR 35.0%
AACAAACCAATACCAAATGC+TGG + chr5_4:23787654-23787673 None:intergenic 35.0%
CATCTTGAGTGTGTATACAA+TGG - chr5_4:23787713-23787732 Msa0845100:five_prime_UTR 35.0%
! AGTGTAAAAAGATTAGCCAG+TGG - chr5_4:23787800-23787819 Msa0845100:five_prime_UTR 35.0%
TGCACACTCAACAAACAAAT+AGG + chr5_4:23787837-23787856 None:intergenic 35.0%
! TTTGTTTGTTGAGTGTGCAT+AGG - chr5_4:23787838-23787857 Msa0845100:five_prime_UTR 35.0%
! ATTGGAGTGGAAATGCATTT+TGG - chr5_4:23787919-23787938 Msa0845100:five_prime_UTR 35.0%
AGATTCTTGTACCTGTGTGA+AGG + chr5_4:23781578-23781597 None:intergenic 40.0%
!! TTTGGCTTTAGCATGCAACT+TGG - chr5_4:23782042-23782061 Msa0845100:three_prime_UTR 40.0%
!! TATGTTCTTTGAGTTGCAGG+AGG - chr5_4:23782385-23782404 Msa0845100:intron 40.0%
TGCAGGAGGATGATATATTG+AGG - chr5_4:23782399-23782418 Msa0845100:intron 40.0%
GCAGGAGGATGATATATTGA+GGG - chr5_4:23782400-23782419 Msa0845100:intron 40.0%
AGGGATCAAATTGGAATCCA+TGG - chr5_4:23782419-23782438 Msa0845100:intron 40.0%
CTACAAGACAGTGTAGAAGA+AGG - chr5_4:23782787-23782806 Msa0845100:intron 40.0%
CTGATTTCAAGAAAGGAGGA+TGG - chr5_4:23782983-23783002 Msa0845100:intron 40.0%
!! TTTGGCCTTAACACTGTATC+TGG - chr5_4:23783100-23783119 Msa0845100:CDS 40.0%
GATAAGTAAAGCCTAGTTCC+AGG - chr5_4:23783194-23783213 Msa0845100:CDS 40.0%
ACGAGATAGGGTTAATTGAG+TGG + chr5_4:23783475-23783494 None:intergenic 40.0%
!! GTTTCACTTTTGCACGAGAT+AGG + chr5_4:23783488-23783507 None:intergenic 40.0%
GTGGACAGAAATAGCAAAAG+TGG - chr5_4:23783690-23783709 Msa0845100:intron 40.0%
! TGTGGAGAAACGGTTTTTCA+CGG + chr5_4:23783835-23783854 None:intergenic 40.0%
! AGCTCTCTTTTTGCACAATG+TGG + chr5_4:23783853-23783872 None:intergenic 40.0%
! CTGATCTTTTCTGCATCATC+AGG + chr5_4:23784085-23784104 None:intergenic 40.0%
!! TGAAACTTCAAGAGCACCAT+TGG - chr5_4:23784132-23784151 Msa0845100:intron 40.0%
ATTCTCGTCAGGCAAGTTAT+TGG + chr5_4:23784185-23784204 None:intergenic 40.0%
GTCTGCAATGTGAAGTTTAG+TGG - chr5_4:23784208-23784227 Msa0845100:CDS 40.0%
ATACGAGTTTCACAACAGCA+AGG + chr5_4:23784278-23784297 None:intergenic 40.0%
GCGGGACCAAAAAAAATTGA+AGG + chr5_4:23784416-23784435 None:intergenic 40.0%
! GTAGCGGAATGTGTAGAAAA+AGG - chr5_4:23784491-23784510 Msa0845100:CDS 40.0%
AATAACTTTCACGAGGGATG+CGG - chr5_4:23785265-23785284 Msa0845100:CDS 40.0%
GTACTGTGTTCAGAACTTTC+TGG + chr5_4:23785347-23785366 None:intergenic 40.0%
!! GAAAGTTCTGAACACAGTAC+AGG - chr5_4:23785347-23785366 Msa0845100:intron 40.0%
AAATTCTCACCAGGACAATG+AGG + chr5_4:23785386-23785405 None:intergenic 40.0%
! GAGTGTTCTAAATTCTCACC+AGG + chr5_4:23785395-23785414 None:intergenic 40.0%
TCTAGTGCAACTTTGGATCA+AGG - chr5_4:23785500-23785519 Msa0845100:CDS 40.0%
! CAGGAAAACTGTTTGGTTTC+CGG + chr5_4:23785603-23785622 None:intergenic 40.0%
CAACCAACAGGAAAACTGTT+TGG + chr5_4:23785610-23785629 None:intergenic 40.0%
TGTCATCTATTTCAACCGTG+TGG - chr5_4:23785845-23785864 Msa0845100:intron 40.0%
ACATAGGGGTAACTTGAAGA+GGG + chr5_4:23786266-23786285 None:intergenic 40.0%
AACATAGGGGTAACTTGAAG+AGG + chr5_4:23786267-23786286 None:intergenic 40.0%
AGCTAAGGATCTGAACATAG+GGG + chr5_4:23786280-23786299 None:intergenic 40.0%
CAGCTAAGGATCTGAACATA+GGG + chr5_4:23786281-23786300 None:intergenic 40.0%
TATGTTCAGATCCTTAGCTG+CGG - chr5_4:23786281-23786300 Msa0845100:intron 40.0%
! ACGCTGCTATTTGACAACAT+TGG + chr5_4:23786506-23786525 None:intergenic 40.0%
GTGTTGTCAAATGCTAGTTG+TGG + chr5_4:23786648-23786667 None:intergenic 40.0%
!! CAACTTCAGTTTTAGTGGTG+GGG - chr5_4:23786721-23786740 Msa0845100:intron 40.0%
ACAGACAAACACAGAAATGG+TGG - chr5_4:23786972-23786991 Msa0845100:CDS 40.0%
CAGACAAACACAGAAATGGT+GGG - chr5_4:23786973-23786992 Msa0845100:CDS 40.0%
! AAACACAGAAATGGTGGGAA+AGG - chr5_4:23786978-23786997 Msa0845100:CDS 40.0%
! AACACAGAAATGGTGGGAAA+GGG - chr5_4:23786979-23786998 Msa0845100:CDS 40.0%
! TAACATTCTAAAGGAGGGGT+AGG + chr5_4:23787475-23787494 None:intergenic 40.0%
!! TACCCCTCCTTTAGAATGTT+AGG - chr5_4:23787474-23787493 Msa0845100:five_prime_UTR 40.0%
AAAGGTAATATTCCTAGGGG+AGG + chr5_4:23787541-23787560 None:intergenic 40.0%
!! TTCGGTGCTAGTATCATGAA+AGG + chr5_4:23787559-23787578 None:intergenic 40.0%
! TTTCATGATACTAGCACCGA+AGG - chr5_4:23787558-23787577 Msa0845100:five_prime_UTR 40.0%
! GTGCTTAGAGTGTCATTCTT+TGG - chr5_4:23787586-23787605 Msa0845100:five_prime_UTR 40.0%
! TTTTTCTCCGATCCAGCATT+TGG - chr5_4:23787639-23787658 Msa0845100:five_prime_UTR 40.0%
ACCAATACCAAATGCTGGAT+CGG + chr5_4:23787649-23787668 None:intergenic 40.0%
ATAGGCATCATATTTGCCAC+TGG + chr5_4:23787819-23787838 None:intergenic 40.0%
!!! GTGGAAATGCATTTTGGCTT+TGG - chr5_4:23787925-23787944 Msa0845100:five_prime_UTR 40.0%
GAGAAACAACATCTGCATTC+TGG + chr5_4:23787954-23787973 None:intergenic 40.0%
! TAGCATGCAACTTGGCTCTT+TGG - chr5_4:23782050-23782069 Msa0845100:three_prime_UTR 45.0%
! CATAAGAGCATGTCTTCCTC+TGG + chr5_4:23783012-23783031 None:intergenic 45.0%
GGAAGACATGCTCTTATGTG+AGG - chr5_4:23783014-23783033 Msa0845100:intron 45.0%
CTTATCTTCCGGTCAAACTC+CGG + chr5_4:23783130-23783149 None:intergenic 45.0%
TTAATGAGCTGCCTGGAACT+AGG + chr5_4:23783208-23783227 None:intergenic 45.0%
CAAGTACTTAATGAGCTGCC+TGG + chr5_4:23783215-23783234 None:intergenic 45.0%
! TTCTTTCTTTTCCCTCGGTG+AGG - chr5_4:23783376-23783395 Msa0845100:intron 45.0%
! TCTTTCTTTTCCCTCGGTGA+GGG - chr5_4:23783377-23783396 Msa0845100:intron 45.0%
TATTTAGTGTGTGGGGTTCG+CGG - chr5_4:23783420-23783439 Msa0845100:intron 45.0%
TAGCAAAAGTGGTTTCAGGC+AGG - chr5_4:23783701-23783720 Msa0845100:intron 45.0%
CAGATTCTGATGCTTCGTCT+CGG + chr5_4:23783944-23783963 None:intergenic 45.0%
TTGCAGACATGATTCTCGTC+AGG + chr5_4:23784196-23784215 None:intergenic 45.0%
GCTGCTGAATGAAAGCAAGA+TGG - chr5_4:23784653-23784672 Msa0845100:intron 45.0%
GTGAGGAAATTCAGCCATGT+TGG - chr5_4:23785209-23785228 Msa0845100:CDS 45.0%
AGGAAATTCAGCCATGTTGG+AGG - chr5_4:23785212-23785231 Msa0845100:CDS 45.0%
ACTACTATGCCTCATTGTCC+TGG - chr5_4:23785374-23785393 Msa0845100:intron 45.0%
CACTCACTGCATCAAGATAG+TGG - chr5_4:23785410-23785429 Msa0845100:intron 45.0%
! ACTGGTTGAACTGGTTGGTT+CGG + chr5_4:23785576-23785595 None:intergenic 45.0%
GTTCAACTGGTTGAACTGGT+TGG + chr5_4:23785581-23785600 None:intergenic 45.0%
ACCAGTTCAACCAGTTGAAC+CGG - chr5_4:23785581-23785600 Msa0845100:intron 45.0%
! TGTTTGGTTTCCGGTTCAAC+TGG + chr5_4:23785594-23785613 None:intergenic 45.0%
!! GTTTTCCTGTTGGTTGATCC+TGG - chr5_4:23785614-23785633 Msa0845100:intron 45.0%
TGTAACCAGGATCAACCAAC+AGG + chr5_4:23785622-23785641 None:intergenic 45.0%
! TGTTTGGTTTCCGGTTGAAC+TGG + chr5_4:23785707-23785726 None:intergenic 45.0%
ACCGGAAACCAAACAGTTTC+CGG - chr5_4:23785712-23785731 Msa0845100:CDS 45.0%
! ACCGGAAACTGTTTGGTTTC+CGG + chr5_4:23785716-23785735 None:intergenic 45.0%
GAAACCAAACAGTTTCCGGT+TGG - chr5_4:23785716-23785735 Msa0845100:CDS 45.0%
TCAACCAACCGGAAACTGTT+TGG + chr5_4:23785723-23785742 None:intergenic 45.0%
! AGTTTCCGGTTGGTTGATCT+TGG - chr5_4:23785726-23785745 Msa0845100:CDS 45.0%
TGCAACCAAGATCAACCAAC+CGG + chr5_4:23785734-23785753 None:intergenic 45.0%
GTTCGGTCAGATTAACCACA+CGG + chr5_4:23785863-23785882 None:intergenic 45.0%
CCATTAAACTGAGGTCTCAC+CGG - chr5_4:23785891-23785910 Msa0845100:intron 45.0%
AACGTATTTACCCAGGAGAC+TGG + chr5_4:23785981-23786000 None:intergenic 45.0%
ACTGAACTCTGCACTTGACA+AGG + chr5_4:23786241-23786260 None:intergenic 45.0%
CATAGGGGTAACTTGAAGAG+GGG + chr5_4:23786265-23786284 None:intergenic 45.0%
GCAGCTAAGGATCTGAACAT+AGG + chr5_4:23786282-23786301 None:intergenic 45.0%
ATGTTCAGATCCTTAGCTGC+GGG - chr5_4:23786282-23786301 Msa0845100:intron 45.0%
TCACGACTAACTACTGCTGT+AGG + chr5_4:23786749-23786768 None:intergenic 45.0%
GGGACAGACAAACACAGAAA+TGG - chr5_4:23786969-23786988 Msa0845100:CDS 45.0%
ACTCTAAGCACGCTAACCTT+CGG + chr5_4:23787577-23787596 None:intergenic 45.0%
TCCGATCCAGCATTTGGTAT+TGG - chr5_4:23787645-23787664 Msa0845100:five_prime_UTR 45.0%
!!! TTCATATTTAAATTTTATAT+AGG + chr5_4:23783330-23783349 None:intergenic 5.0%
CATTGTCACGTGGACTCAAG+AGG - chr5_4:23782210-23782229 Msa0845100:intron 50.0%
CTGGTAATCCGGAGTTTGAC+CGG - chr5_4:23783119-23783138 Msa0845100:CDS 50.0%
TTGAAACCTACCCTCACCGA+GGG + chr5_4:23783390-23783409 None:intergenic 50.0%
ATTGAAACCTACCCTCACCG+AGG + chr5_4:23783391-23783410 None:intergenic 50.0%
!! TTGAACTGGTTGGTTCGGTG+TGG + chr5_4:23785571-23785590 None:intergenic 50.0%
TCCGGTTCAACTGGTTGAAC+TGG + chr5_4:23785585-23785604 None:intergenic 50.0%
!! TTGAACTGGTTGGTTCGGTG+TGG + chr5_4:23785571-23785590 None:intergenic 50.0%
ACCGAACCAACCAGTTCAAC+CGG - chr5_4:23785572-23785591 Msa0845100:CDS 50.0%
! TCCGGTTGAACTGGTTGGTT+CGG + chr5_4:23785698-23785717 None:intergenic 50.0%
TGGTTTCCGGTTGAACTGGT+TGG + chr5_4:23785703-23785722 None:intergenic 50.0%
CCGGTGAGACCTCAGTTTAA+TGG + chr5_4:23785894-23785913 None:intergenic 50.0%
ACTAGGAATTCCCGCAGCTA+AGG + chr5_4:23786295-23786314 None:intergenic 50.0%
GCTATAGCACTGTAGCGTAG+TGG - chr5_4:23786600-23786619 Msa0845100:intron 50.0%
TTGCAATGTGGCGGTTGTGA+GGG + chr5_4:23787295-23787314 None:intergenic 50.0%
TTTGCAATGTGGCGGTTGTG+AGG + chr5_4:23787296-23787315 None:intergenic 50.0%
! AGGGCTCTTTTGCAATGTGG+CGG + chr5_4:23787304-23787323 None:intergenic 50.0%
! AGCAGGGCTCTTTTGCAATG+TGG + chr5_4:23787307-23787326 None:intergenic 50.0%
AGAAGAACGAACACGCGAGA+TGG + chr5_4:23787400-23787419 None:intergenic 50.0%
CGTGTTCGTTCTTCTCATCC+TGG - chr5_4:23787405-23787424 Msa0845100:five_prime_UTR 50.0%
! CAGTGTCTTTTTCCTCCCCT+AGG - chr5_4:23787526-23787545 Msa0845100:five_prime_UTR 50.0%
!! AGGAGCGTCACATTGTCACG+TGG - chr5_4:23782200-23782219 Msa0845100:intron 55.0%
GAAAGGAGGATGGTCACCAG+AGG - chr5_4:23782993-23783012 Msa0845100:intron 55.0%
! TCTTTTCCCTCGGTGAGGGT+AGG - chr5_4:23783381-23783400 Msa0845100:intron 55.0%
ACCTGGACGGAAGATCGAAC+CGG + chr5_4:23785913-23785932 None:intergenic 55.0%
!! TTGGCGATTGGGTTGAGGGA+TGG + chr5_4:23787271-23787290 None:intergenic 55.0%
! GTTGTGAGGGGTTGGCGATT+GGG + chr5_4:23787282-23787301 None:intergenic 55.0%
TGCAATGTGGCGGTTGTGAG+GGG + chr5_4:23787294-23787313 None:intergenic 55.0%
GACGACTACTATCACGCAGC+AGG + chr5_4:23787694-23787713 None:intergenic 55.0%
!! ACCGGTTCGATCTTCCGTCC+AGG - chr5_4:23785909-23785928 Msa0845100:intron 60.0%
!! GGGGTTGGCGATTGGGTTGA+GGG + chr5_4:23787275-23787294 None:intergenic 60.0%
! AGGGGTTGGCGATTGGGTTG+AGG + chr5_4:23787276-23787295 None:intergenic 60.0%
! GGTTGTGAGGGGTTGGCGAT+TGG + chr5_4:23787283-23787302 None:intergenic 60.0%
ATGTGGCGGTTGTGAGGGGT+TGG + chr5_4:23787290-23787309 None:intergenic 60.0%
GATGGTCGCGGTGAGGAGAA+AGG + chr5_4:23787382-23787401 None:intergenic 60.0%
ACGAACACGCGAGATGGTCG+CGG + chr5_4:23787394-23787413 None:intergenic 60.0%
CACGCGAGATGGTCGCGGTG+AGG + chr5_4:23787389-23787408 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23781332 23788081 23781332 ID=Msa0845100;Name=Msa0845100
chr5_4 mRNA 23781332 23788081 23781332 ID=Msa0845100-mRNA-1;Parent=Msa0845100;Name=Msa0845100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=804|0.9|1|1|1|1|11|745|448
chr5_4 exon 23781332 23782184 23781332 ID=Msa0845100-mRNA-1:exon:9744;Parent=Msa0845100-mRNA-1
chr5_4 exon 23783081 23783229 23783081 ID=Msa0845100-mRNA-1:exon:9743;Parent=Msa0845100-mRNA-1
chr5_4 exon 23783892 23784094 23783892 ID=Msa0845100-mRNA-1:exon:9742;Parent=Msa0845100-mRNA-1
chr5_4 exon 23784180 23784316 23784180 ID=Msa0845100-mRNA-1:exon:9741;Parent=Msa0845100-mRNA-1
chr5_4 exon 23784463 23784608 23784463 ID=Msa0845100-mRNA-1:exon:9740;Parent=Msa0845100-mRNA-1
chr5_4 exon 23785178 23785344 23785178 ID=Msa0845100-mRNA-1:exon:9739;Parent=Msa0845100-mRNA-1
chr5_4 exon 23785428 23785592 23785428 ID=Msa0845100-mRNA-1:exon:9738;Parent=Msa0845100-mRNA-1
chr5_4 exon 23785691 23785746 23785691 ID=Msa0845100-mRNA-1:exon:9737;Parent=Msa0845100-mRNA-1
chr5_4 exon 23786378 23786450 23786378 ID=Msa0845100-mRNA-1:exon:9736;Parent=Msa0845100-mRNA-1
chr5_4 exon 23786963 23787009 23786963 ID=Msa0845100-mRNA-1:exon:9735;Parent=Msa0845100-mRNA-1
chr5_4 exon 23787182 23788081 23787182 ID=Msa0845100-mRNA-1:exon:9734;Parent=Msa0845100-mRNA-1
chr5_4 five_prime_UTR 23787278 23788081 23787278 ID=Msa0845100-mRNA-1:five_prime_utr;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23787182 23787277 23787182 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23786963 23787009 23786963 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23786378 23786450 23786378 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23785691 23785746 23785691 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23785428 23785592 23785428 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23785178 23785344 23785178 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23784463 23784608 23784463 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23784180 23784316 23784180 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23783892 23784094 23783892 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23783081 23783229 23783081 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 CDS 23782077 23782184 23782077 ID=Msa0845100-mRNA-1:cds;Parent=Msa0845100-mRNA-1
chr5_4 three_prime_UTR 23781332 23782076 23781332 ID=Msa0845100-mRNA-1:three_prime_utr;Parent=Msa0845100-mRNA-1
Gene Sequence

>Msa0845100

ATGCAACAAGATCATATGAAGAAGCAGAAGCAGAAGCAGCTTCTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTCACGTGGACTCAAGAGGAGGATGATATATTGAGGGATCAAATTGGAATCCATGGAACTGAAAAATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGAAATAGGTGGACAGAAATAGCAAAAGTGGTTTCAGGCAGAACGGATAACGCCGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACATTTCATACACGAATTCAAATAACAAAAGGATTATTTTCCGAGACGAAGCATCAGAATCTGCAGTAGATTTTAAGAAGATGAGGAGGTCACATATCCCTGATGATGCAGAAAAGATCAGCTTTGCAGACAGATCACATAAACAAAATGAAACTTCAAGAGCACCATTGGCAGTTATAGCTCAAAACTCTCACAATGCCAATAACTTGCCTGACGAGAATCATGTCTGCAATGTGAAGTTTAGTGGTTATGCTCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCAAAGATAAACGCATTGATGCAACAAGCTGAGCTACTAACTTCGCTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACCGAAACAAAGAATCAGATGTTTCTGGATATAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGGAAGACTTGAAGAATAATAGTGAGGAAATTCAGCCATGTTGGAGGTATATGGAATTTTATGAAGACTCTCCAGAAAGTTCTGAACACAGTACAGGATCAACTACTATGCCTCATTGTCCTGGTGAGAATTTAGAACACTCACTGCATCAAGATAGTGGAACTGAACTCAAGTCTATACAAATTGAACATCAAAAGGAAATTGGAATATGTGATCAAGTGATTCTTTCTAGTGCAACTTTGGATCAAGAAGATATATTCTCATCTTGTGAAGAACAGATAAACAATGATGGCATTGTTTGTTCCTTGTCAAGTGCAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTATGTTCAGATCCTTAGCTGCGGGAATTCCTAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGATTCTCCATCCCTCAACCCAATCGCCAACCCCTCACAACCGCCACATTGCAAAAGAGCCCTGCTACAAAGTTAA
Protein sequence

>Msa0845100

MQQDHMKKQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTEKWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNNKRIIFRDEASESAVDFKKMRRSHIPDDAEKISFADRSHKQNETSRAPLAVIAQNSHNANNLPDENHVCNVKFSGYAQNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDVSGYKIPDLQLVDLKDLLEDLKNNSEEIQPCWRYMEFYEDSPESSEHSTGSTTMPHCPGENLEHSLHQDSGTELKSIQIEHQKEIGICDQVILSSATLDQEDIFSSCEEQINNDGIVCSLSSAEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPSLNPIANPSQPPHCKRALLQS*