AlfalfaGEDB | Msa0845870

M. sativa cultivar zhongmu-4 / Msa0845870

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845870	XP_003613827.1	88.927	289	29	2	1	287	1	288	6.05e-169	481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845870	sp\|Q9SEZ3\|CDF5_ARATH	44.048	168	62	6	131	272	126	287	7.46e-38	140

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845870	G7KGL9	88.927	289	29	2	1	287	1	288	2.89e-169	481

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TFs/TRs:

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Gene ID	Type	Classification
Msa0845870	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0766410	Msa0845870	0.866241	3.293018e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845870	MtrunA17_Chr5g0417571	88.927	289	29	2	1	287	1	288	5.56e-173	481
Msa0845870	MtrunA17_Chr5g0417551	72.165	291	61	5	1	286	1	276	3.30e-134	384
Msa0845870	MtrunA17_Chr5g0417601	68.750	288	77	3	1	283	1	280	3.67e-126	364
Msa0845870	MtrunA17_Chr5g0417561	67.698	291	66	7	1	286	1	268	5.58e-122	353
Msa0845870	MtrunA17_Chr4g0042481	35.561	374	114	15	2	283	4	342	1.40e-49	170
Msa0845870	MtrunA17_Chr7g0217581	38.258	264	116	6	4	243	103	343	2.68e-43	155
Msa0845870	MtrunA17_Chr6g0453321	38.333	240	115	7	6	220	8	239	1.42e-39	144
Msa0845870	MtrunA17_Chr3g0092111	38.462	234	114	7	7	216	9	236	2.39e-36	135
Msa0845870	MtrunA17_Chr7g0254161	54.310	116	32	3	126	220	90	205	7.99e-35	130
Msa0845870	MtrunA17_Chr6g0460731	54.369	103	43	2	97	195	53	155	7.23e-33	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845870	AT1G69570.1	44.048	168	62	6	131	272	126	287	7.58e-39	140
Msa0845870	AT1G26790.1	37.443	219	110	7	84	281	59	271	1.34e-36	134
Msa0845870	AT5G39660.3	36.546	249	120	7	2	222	1	239	2.67e-36	135
Msa0845870	AT5G39660.1	36.546	249	120	7	2	222	1	239	2.67e-36	135
Msa0845870	AT5G39660.2	36.546	249	120	7	2	222	1	239	2.67e-36	135
Msa0845870	AT5G62430.1	46.203	158	60	7	122	261	38	188	2.81e-35	129
Msa0845870	AT3G47500.1	54.054	111	38	1	86	196	72	169	5.27e-33	126
Msa0845870	AT1G29160.1	65.217	69	21	1	122	190	50	115	1.85e-31	115
Msa0845870	AT2G34140.1	40.741	135	66	4	85	208	2	133	7.12e-31	114
Msa0845870	AT5G60200.1	61.538	65	25	0	130	194	48	112	5.85e-25	100

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Find 54 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTCATCGAGGATG+AGG	0.512018	5_4:+25286512	Msa0845870:CDS
AAATCTTCATGAGCAATAGT+AGG	0.488963	5_4:-25285739	None:intergenic
AAGAAGAGATTCTGTTCTTG+CGG	0.572733	5_4:-25286851	None:intergenic
AAGGAAACATTCAAGAGATG+GGG	0.613145	5_4:+25287165	Msa0845870:three_prime_UTR
AATAGTAGGAGTAAATTCTG+AGG	0.595274	5_4:-25285725	None:intergenic
AATGATGGAGGACTTTCCAA+GGG	0.627563	5_4:+25287208	Msa0845870:three_prime_UTR
AATGCTATATTTGGATAGAT+TGG	0.337846	5_4:-25287065	None:intergenic
ACAACTTGGTCTGGTTTCTT+TGG	0.248772	5_4:-25286681	None:intergenic
ACATGATGCAAAGAGATATA+AGG	0.388068	5_4:+25285828	Msa0845870:CDS
ACCACGAGAAATATGCTTAT+AGG	0.437951	5_4:+25286819	Msa0845870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTAGGAGTAAATTCTG+AGG	-	chr5_4:25285728-25285747	None:intergenic	30.0%
AAATCTTCATGAGCAATAGT+AGG	-	chr5_4:25285742-25285761	None:intergenic	30.0%
ACATGATGCAAAGAGATATA+AGG	+	chr5_4:25285828-25285847	Msa0845870:CDS	30.0%
TTCTTCAAATAGAATCACCA+TGG	-	chr5_4:25285865-25285884	None:intergenic	30.0%
AAAATATGTTGCTAGCTAGT+AGG	+	chr5_4:25285899-25285918	Msa0845870:intron	30.0%
GCATCTCTCTTTATATTTGT+TGG	-	chr5_4:25286210-25286229	None:intergenic	30.0%
AGTGAAGTTGAAGACATAAT+AGG	-	chr5_4:25286942-25286961	None:intergenic	30.0%
TCAACTTCACTTCACAAAAA+AGG	+	chr5_4:25286951-25286970	Msa0845870:CDS	30.0%
CAACTTCACTTCACAAAAAA+GGG	+	chr5_4:25286952-25286971	Msa0845870:CDS	30.0%
TTAAGGAAACATTCAAGAGA+TGG	+	chr5_4:25287163-25287182	Msa0845870:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	25285643	25287312	25285643	ID=Msa0845870;Name=Msa0845870
chr5_4	mRNA	25285643	25287312	25285643	ID=Msa0845870-mRNA-1;Parent=Msa0845870;Name=Msa0845870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|0.5\|1\|1\|1\|2\|152\|288
chr5_4	exon	25285643	25285849	25285643	ID=Msa0845870-mRNA-1:exon:10049;Parent=Msa0845870-mRNA-1
chr5_4	exon	25286501	25287312	25286501	ID=Msa0845870-mRNA-1:exon:10050;Parent=Msa0845870-mRNA-1
chr5_4	CDS	25285643	25285849	25285643	ID=Msa0845870-mRNA-1:cds;Parent=Msa0845870-mRNA-1
chr5_4	CDS	25286501	25287160	25286501	ID=Msa0845870-mRNA-1:cds;Parent=Msa0845870-mRNA-1
chr5_4	three_prime_UTR	25287161	25287312	25287161	ID=Msa0845870-mRNA-1:three_prime_utr;Parent=Msa0845870-mRNA-1

Gene Sequence

>Msa0845870

ATGATAAACAATTCAACCATAAAGCTTTTTGGGAGAACGATTTTTCAAACACACAACACTGATGTGTCTATCAATGATTCTTCCTCAGAATTTACTCCTACTATTGCTCATGAAGATTTCTCTGATCATAGTAGTCATTCATCTTTATCTGCATCTTCTCCACTTGAAGTGAATTCTTCAACTGAACATGATGCAAAGAGATATAAGGAAACATCAAGAAAAGAACTCATCGAGGATGAGGCTTCATTCCAAACCACAGAGGATTCAGAATCTCCGACATCTTCAAGCCTTATTGAGAACCTGAAAACTCCCTCATCTGAAACAGAGACGTCTCAATCAATTTCCACTAAAATTGATAAACAAACTGATATGTCACAAGAAAAATCTCCAAAGAAACCAGACCAAGTTGTTCCATGTCCAAGATGCAAAAGCACGGACACAAAATTTTGCTACTACAACAACTACAACGTCAAACAGCCTCGACACTTCTGCAAAAATTGCCAAAGATACTGGACTTCTGGAGGAACCACGAGAAATATGCTTATAGGCGCAGGTCGCCGCAAGAACAGAATCTCTTCTTCTTTTCATTCTGATACCTCACATCATCATCAAATGAGTACTGTCTTGACATTTGGATCGGATTCTCCTATTATGTCTTCAACTTCACTTCACAAAAAAGGGAATGTTGGTTCACTTGAAAAAACATTTGACAAGAGTTATCAAAGTTTTCCTCAACAGTTTCCATGGAATCCTGCTATGTGTTATCCTGTGCCAATCTATCCAAATATAGCATTCTATGGTGGTTGTTTGGTACCATCTTGGAGCCTACAATCCATCTCAACACAGTCTAATGAACCAAATAACTAA

Protein sequence

>Msa0845870

MINNSTIKLFGRTIFQTHNTDVSINDSSSEFTPTIAHEDFSDHSSHSSLSASSPLEVNSSTEHDAKRYKETSRKELIEDEASFQTTEDSESPTSSSLIENLKTPSSETETSQSISTKIDKQTDMSQEKSPKKPDQVVPCPRCKSTDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTTRNMLIGAGRRKNRISSSFHSDTSHHHQMSTVLTFGSDSPIMSSTSLHKKGNVGSLEKTFDKSYQSFPQQFPWNPAMCYPVPIYPNIAFYGGCLVPSWSLQSISTQSNEPNN*