AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846200 MtrunA17_Chr5g0417791 92.537 268 6 2 1 268 1 254 0.0 509
Msa0846200 MtrunA17_Chr4g0042561 73.913 253 56 5 2 253 8 251 1.32e-134 382
Msa0846200 MtrunA17_Chr2g0326361 66.471 170 55 1 3 170 14 183 1.11e-81 249
Msa0846200 MtrunA17_Chr7g0252971 49.632 272 111 6 3 252 8 275 5.74e-80 245
Msa0846200 MtrunA17_Chr2g0318101 65.680 169 47 3 3 161 15 182 1.46e-78 242
Msa0846200 MtrunA17_Chr4g0047841 61.932 176 46 2 3 157 15 190 2.59e-76 236
Msa0846200 MtrunA17_Chr7g0263931 68.153 157 48 1 1 155 9 165 3.70e-76 235
Msa0846200 MtrunA17_Chr8g0384721 47.348 264 114 7 1 241 5 266 3.37e-74 229
Msa0846200 MtrunA17_Chr3g0124761 58.115 191 69 4 1 188 5 187 5.06e-74 228
Msa0846200 MtrunA17_Chr8g0359921 61.875 160 59 1 1 160 12 169 9.38e-71 221
Msa0846200 MtrunA17_Chr2g0318081 63.226 155 53 1 1 155 14 164 1.62e-69 219
Msa0846200 MtrunA17_Chr3g0130731 60.000 165 64 2 1 165 5 167 5.69e-69 216
Msa0846200 MtrunA17_Chr5g0417001 47.423 194 92 3 5 190 16 207 1.13e-58 192
Msa0846200 MtrunA17_Chr2g0309891 50.000 192 80 5 1 190 4 181 1.14e-58 191
Msa0846200 MtrunA17_Chr4g0060931 43.697 238 116 5 1 236 15 236 1.81e-58 191
Msa0846200 MtrunA17_Chr6g0481091 50.273 183 84 3 3 182 6 184 4.19e-58 186
Msa0846200 MtrunA17_Chr8g0361731 40.076 262 135 6 5 248 16 273 1.53e-57 189
Msa0846200 MtrunA17_Chr6g0453451 50.000 172 84 1 2 173 19 188 8.33e-57 186
Msa0846200 MtrunA17_Chr6g0484441 53.165 158 68 1 3 160 5 156 1.01e-56 185
Msa0846200 MtrunA17_Chr7g0214071 57.595 158 56 4 1 156 13 161 9.03e-56 181
Msa0846200 MtrunA17_Chr3g0091921 55.484 155 67 1 1 155 14 166 1.10e-55 182
Msa0846200 MtrunA17_Chr2g0309331 50.299 167 73 3 1 163 8 168 1.20e-55 183
Msa0846200 MtrunA17_Chr2g0316971 54.140 157 68 2 3 157 23 177 1.21e-55 184
Msa0846200 MtrunA17_Chr6g0453131 50.000 174 81 3 2 169 14 187 2.84e-55 183
Msa0846200 MtrunA17_Chr4g0017921 50.549 182 75 3 3 176 8 182 5.16e-55 182
Msa0846200 MtrunA17_Chr8g0346001 48.538 171 80 2 2 164 14 184 1.32e-54 183
Msa0846200 MtrunA17_Chr4g0018391 51.250 160 69 2 3 159 7 160 2.51e-54 180
Msa0846200 MtrunA17_Chr8g0372121 46.111 180 87 3 3 179 6 178 3.46e-54 178
Msa0846200 MtrunA17_Chr3g0139331 51.515 165 72 2 3 165 11 169 3.81e-54 179
Msa0846200 MtrunA17_Chr1g0147421 50.829 181 68 6 3 177 27 192 5.39e-54 179
Msa0846200 MtrunA17_Chr4g0056541 50.000 160 71 2 3 159 7 160 1.64e-53 178
Msa0846200 MtrunA17_Chr5g0405211 50.318 157 69 2 3 156 8 158 1.74e-53 178
Msa0846200 MtrunA17_Chr7g0253011 51.220 164 74 2 1 160 15 176 2.44e-53 178
Msa0846200 MtrunA17_Chr3g0109821 53.125 160 70 4 1 158 4 160 9.76e-53 182
Msa0846200 MtrunA17_Chr6g0461661 51.250 160 74 2 1 158 16 173 1.03e-52 176
Msa0846200 MtrunA17_Chr1g0200561 51.282 156 67 2 3 155 19 168 4.81e-52 174
Msa0846200 MtrunA17_Chr5g0433781 52.500 160 70 2 1 158 4 159 8.44e-52 179
Msa0846200 MtrunA17_Chr5g0398971 44.324 185 90 5 3 180 7 185 4.93e-50 169
Msa0846200 MtrunA17_Chr5g0442771 49.686 159 72 2 5 155 20 178 4.94e-50 167
Msa0846200 MtrunA17_Chr7g0217721 45.087 173 84 1 1 162 17 189 1.19e-49 168
Msa0846200 MtrunA17_Chr1g0183741 47.097 155 72 2 3 155 10 156 3.83e-49 164
Msa0846200 MtrunA17_Chr2g0312321 49.351 154 73 3 2 155 10 158 6.34e-49 164
Msa0846200 MtrunA17_Chr4g0076731 48.810 168 70 5 5 170 56 209 4.12e-48 166
Msa0846200 MtrunA17_Chr2g0311651 49.412 170 71 5 5 161 24 191 4.75e-48 162
Msa0846200 MtrunA17_Chr8g0385991 51.592 157 71 3 3 156 14 168 6.38e-48 159
Msa0846200 MtrunA17_Chr5g0400461 50.617 162 64 3 3 155 6 160 2.39e-47 161
Msa0846200 MtrunA17_Chr2g0311661 50.610 164 67 4 5 155 23 185 5.31e-47 159
Msa0846200 MtrunA17_Chr7g0261411 46.405 153 72 2 3 153 10 154 1.40e-46 158
Msa0846200 MtrunA17_Chr3g0144271 57.364 129 52 2 3 128 23 151 2.28e-46 161
Msa0846200 MtrunA17_Chr4g0054791 46.739 184 81 5 3 180 6 178 6.00e-46 157
Msa0846200 MtrunA17_Chr3g0131911 43.350 203 103 5 2 198 13 209 6.53e-46 155
Msa0846200 MtrunA17_Chr5g0428991 46.632 193 85 4 2 187 24 205 8.68e-46 163
Msa0846200 MtrunA17_Chr7g0217711 53.846 130 60 0 1 130 17 146 1.25e-45 152
Msa0846200 MtrunA17_Chr1g0201021 47.771 157 76 2 1 155 17 169 5.55e-45 160
Msa0846200 MtrunA17_Chr4g0038751 48.148 162 72 2 5 163 17 169 6.62e-45 154
Msa0846200 MtrunA17_Chr3g0130101 47.403 154 75 2 5 156 9 158 2.69e-44 154
Msa0846200 MtrunA17_Chr1g0197351 49.375 160 77 2 3 158 42 201 5.41e-44 156
Msa0846200 MtrunA17_Chr3g0128151 50.000 162 65 3 3 157 22 174 1.24e-43 157
Msa0846200 MtrunA17_Chr1g0197361 47.742 155 71 4 5 155 10 158 5.19e-42 152
Msa0846200 MtrunA17_Chr3g0128111 42.000 200 103 4 6 203 45 233 6.39e-42 145
Msa0846200 MtrunA17_Chr8g0364791 45.223 157 80 3 2 156 5 157 1.12e-40 146
Msa0846200 MtrunA17_Chr3g0092671 46.452 155 73 5 5 155 7 155 3.99e-40 146
Msa0846200 MtrunA17_Chr8g0384201 43.312 157 83 4 2 156 5 157 1.71e-37 139
Msa0846200 MtrunA17_Chr4g0026141 39.791 191 101 6 3 185 5 189 7.80e-37 132
Msa0846200 MtrunA17_Chr2g0321631 43.949 157 80 4 4 153 5 160 1.08e-36 131
Msa0846200 MtrunA17_Chr3g0113001 56.075 107 46 1 54 160 16 121 9.87e-36 130
Msa0846200 MtrunA17_Chr7g0266701 39.766 171 91 5 3 163 4 172 1.31e-35 129
Msa0846200 MtrunA17_Chr4g0050701 39.490 157 83 3 3 155 11 159 7.61e-35 124
Msa0846200 MtrunA17_Chr2g0321741 42.038 157 72 5 34 188 23 162 1.23e-33 125
Msa0846200 MtrunA17_Chr8g0345671 44.231 156 72 7 2 152 10 155 2.04e-32 123
Msa0846200 MtrunA17_Chr8g0345711 40.625 160 82 7 3 150 12 170 4.95e-30 111
Msa0846200 MtrunA17_Chr3g0113031 54.255 94 43 0 67 160 4 97 1.02e-28 110
Msa0846200 MtrunA17_Chr8g0384351 41.026 156 68 5 1 156 8 139 1.36e-28 108
Msa0846200 MtrunA17_Chr8g0345691 45.038 131 62 6 3 126 12 139 2.73e-27 110
Msa0846200 MtrunA17_Chr8g0345731 44.275 131 66 5 3 126 24 154 4.59e-27 103
Msa0846200 MtrunA17_Chr3g0130321 32.487 197 107 8 1 187 5 185 6.73e-26 102
Msa0846200 MtrunA17_Chr8g0345721 39.355 155 59 6 6 126 38 191 1.03e-24 99.0
Msa0846200 MtrunA17_Chr8g0345741 44.068 118 60 5 14 126 2 118 4.07e-23 93.2
Msa0846200 MtrunA17_Chr7g0243371 57.333 75 30 1 56 128 17 91 8.32e-23 90.9
Msa0846200 MtrunA17_Chr8g0345701 36.364 143 69 6 3 126 7 146 8.32e-19 82.0
Msa0846200 MtrunA17_Chr7g0251651 30.636 173 110 6 1 167 16 184 3.59e-18 80.9
Msa0846200 MtrunA17_Chr7g0251661 29.730 148 97 5 1 145 8 151 5.24e-17 76.6
Msa0846200 MtrunA17_Chr7g0251671 27.891 147 99 5 2 145 9 151 5.09e-15 71.2
Msa0846200 MtrunA17_Chr1g0168571 31.613 155 85 7 11 154 13 157 4.10e-11 62.8
Msa0846200 MtrunA17_Chr4g0040541 28.947 228 118 10 3 188 48 273 7.68e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846200 AT1G69490.1 67.727 220 60 2 3 211 9 228 3.17e-110 320
Msa0846200 AT1G61110.1 69.753 162 40 3 3 155 16 177 3.24e-78 241
Msa0846200 AT3G15510.1 49.789 237 91 5 7 222 21 250 1.26e-76 238
Msa0846200 AT3G04070.2 50.407 246 98 5 3 225 10 254 2.95e-76 236
Msa0846200 AT3G04070.1 48.473 262 95 6 3 225 10 270 8.66e-76 236
Msa0846200 AT1G77450.1 47.561 246 120 5 1 240 8 250 3.09e-73 226
Msa0846200 AT4G27410.2 49.541 218 92 3 1 204 12 225 3.51e-72 224
Msa0846200 AT1G01720.1 63.125 160 58 1 1 160 5 163 4.25e-72 224
Msa0846200 AT3G15500.1 63.462 156 53 1 1 156 12 163 5.71e-71 222
Msa0846200 AT1G52890.1 63.057 157 54 1 1 157 12 164 1.01e-70 221
Msa0846200 AT5G08790.1 56.111 180 77 2 1 179 5 183 8.41e-70 218
Msa0846200 AT5G63790.1 56.111 180 76 3 1 178 48 226 4.63e-69 217
Msa0846200 AT5G63790.2 56.111 180 76 3 1 178 58 236 6.41e-69 217
Msa0846200 AT1G52880.1 66.258 163 47 2 7 161 21 183 7.26e-68 214
Msa0846200 AT4G27410.3 45.957 235 92 4 1 204 12 242 1.40e-67 213
Msa0846200 AT3G17730.1 51.099 182 83 2 3 182 6 183 7.95e-60 191
Msa0846200 AT5G39610.1 55.128 156 68 1 1 156 18 171 1.98e-58 189
Msa0846200 AT2G24430.2 55.000 160 65 2 3 160 16 170 2.21e-58 190
Msa0846200 AT2G24430.1 55.000 160 65 2 3 160 16 170 2.21e-58 190
Msa0846200 AT5G07680.2 56.774 155 65 1 1 155 1 153 2.72e-58 189
Msa0846200 AT5G07680.1 56.774 155 65 1 1 155 15 167 3.16e-58 190
Msa0846200 AT5G61430.1 55.484 155 67 1 1 155 14 166 2.60e-57 187
Msa0846200 AT3G18400.1 50.633 158 73 1 3 160 5 157 2.22e-56 184
Msa0846200 AT2G33480.2 55.769 156 60 2 1 156 13 159 5.87e-56 182
Msa0846200 AT3G15170.1 54.545 165 70 3 3 165 20 181 1.01e-55 182
Msa0846200 AT5G13180.1 56.962 158 58 4 1 156 12 161 2.21e-55 180
Msa0846200 AT2G33480.1 55.769 156 62 3 1 156 13 161 3.13e-55 180
Msa0846200 AT3G29035.1 54.902 153 67 1 1 153 22 172 3.29e-55 182
Msa0846200 AT5G39820.1 48.864 176 71 3 5 161 22 197 3.63e-55 182
Msa0846200 AT4G36160.1 48.256 172 80 2 3 171 10 175 4.09e-55 183
Msa0846200 AT4G36160.3 48.256 172 80 2 3 171 10 175 4.09e-55 183
Msa0846200 AT4G36160.2 48.256 172 80 2 3 171 14 179 4.71e-55 183
Msa0846200 AT1G76420.1 51.235 162 72 3 3 162 22 178 1.77e-54 180
Msa0846200 AT1G79580.3 52.795 161 65 3 1 157 15 168 2.54e-54 181
Msa0846200 AT1G79580.5 52.795 161 65 3 1 157 15 168 2.54e-54 181
Msa0846200 AT1G79580.4 52.795 161 65 3 1 157 15 168 2.54e-54 181
Msa0846200 AT1G79580.2 52.795 161 65 3 1 157 15 168 2.54e-54 181
Msa0846200 AT1G79580.1 52.795 161 65 3 1 157 15 168 2.54e-54 181
Msa0846200 AT5G18270.2 44.550 211 109 3 1 210 19 222 3.75e-54 179
Msa0846200 AT4G10350.1 48.370 184 84 3 3 183 9 184 3.86e-54 179
Msa0846200 AT1G65910.1 50.303 165 76 3 1 163 4 164 4.82e-54 186
Msa0846200 AT1G26870.1 52.410 166 68 3 3 159 16 179 6.94e-54 181
Msa0846200 AT5G18270.1 44.076 211 110 3 1 210 19 222 1.18e-53 178
Msa0846200 AT1G33280.1 52.795 161 66 2 3 160 8 161 1.21e-53 177
Msa0846200 AT5G53950.1 50.602 166 78 2 3 166 17 180 2.08e-53 179
Msa0846200 AT2G18060.3 47.879 165 77 2 3 164 9 167 2.39e-53 178
Msa0846200 AT2G18060.1 47.879 165 77 2 3 164 9 167 2.39e-53 178
Msa0846200 AT3G04060.1 44.444 207 102 4 1 206 18 212 2.50e-53 177
Msa0846200 AT1G71930.2 48.718 156 71 2 3 155 9 158 6.70e-53 176
Msa0846200 AT1G71930.1 48.718 156 71 2 3 155 9 158 6.70e-53 176
Msa0846200 AT2G46770.1 47.429 175 80 3 2 164 15 189 8.97e-53 177
Msa0846200 AT5G17260.1 54.140 157 67 2 1 155 4 157 9.81e-53 179
Msa0846200 AT5G66300.1 50.000 158 71 2 3 157 12 164 2.91e-52 173
Msa0846200 AT1G62700.1 50.633 158 69 2 2 156 6 157 1.34e-51 174
Msa0846200 AT1G62700.2 50.633 158 69 2 2 156 6 157 1.34e-51 174
Msa0846200 AT2G43000.1 44.000 200 94 3 5 204 20 201 2.34e-51 170
Msa0846200 AT1G32770.1 48.810 168 77 2 2 160 15 182 2.96e-51 172
Msa0846200 AT1G54330.1 51.592 157 67 2 1 155 4 153 3.27e-51 171
Msa0846200 AT3G61910.1 40.000 205 109 4 2 194 10 212 3.32e-51 172
Msa0846200 AT5G62380.2 50.000 160 71 2 3 159 7 160 3.94e-51 172
Msa0846200 AT5G62380.1 50.000 160 71 2 3 159 7 160 3.94e-51 172
Msa0846200 AT1G12260.2 49.045 157 71 2 3 156 7 157 4.98e-51 171
Msa0846200 AT1G56010.2 48.387 155 78 2 2 155 18 171 6.81e-51 171
Msa0846200 AT3G03200.1 52.866 157 69 3 1 155 4 157 7.12e-51 174
Msa0846200 AT1G12260.1 49.045 157 71 2 3 156 7 157 9.33e-51 172
Msa0846200 AT5G46590.1 54.375 160 65 4 3 158 6 161 5.45e-50 167
Msa0846200 AT3G10480.1 50.633 158 73 2 3 158 27 181 1.67e-49 170
Msa0846200 AT3G10480.2 51.266 158 71 3 3 158 27 180 4.74e-49 169
Msa0846200 AT2G17040.1 46.032 189 89 3 5 190 8 186 5.04e-49 164
Msa0846200 AT3G10490.1 50.000 158 74 2 3 158 27 181 7.40e-49 162
Msa0846200 AT2G02450.2 48.503 167 72 3 5 170 53 206 8.42e-49 167
Msa0846200 AT2G02450.1 48.503 167 72 3 5 170 53 206 8.98e-49 167
Msa0846200 AT4G17980.1 53.125 160 63 5 3 155 6 160 2.77e-48 162
Msa0846200 AT5G46590.2 60.465 129 48 2 3 128 6 134 3.45e-48 162
Msa0846200 AT4G17980.2 53.125 160 63 5 3 155 6 160 3.90e-48 162
Msa0846200 AT3G12977.1 46.405 153 79 2 3 155 18 167 2.25e-47 160
Msa0846200 AT3G10490.2 50.000 158 74 2 3 158 27 181 2.39e-47 164
Msa0846200 AT3G10500.1 49.677 155 72 2 3 155 9 159 4.18e-47 166
Msa0846200 AT4G28530.1 44.186 172 70 3 2 155 9 172 1.30e-45 157
Msa0846200 AT5G04410.1 49.032 155 73 2 3 155 9 159 1.53e-45 162
Msa0846200 AT1G32510.1 46.809 188 80 5 3 174 6 189 1.65e-45 155
Msa0846200 AT5G24590.2 46.927 179 78 4 3 173 13 182 1.92e-45 159
Msa0846200 AT1G34190.1 55.556 126 54 1 5 128 18 143 1.82e-44 159
Msa0846200 AT3G44290.2 49.007 151 65 2 5 154 16 155 1.98e-44 151
Msa0846200 AT3G10480.3 42.408 191 72 3 3 158 27 214 2.06e-44 158
Msa0846200 AT4G35580.3 50.625 160 63 3 3 155 9 159 3.74e-44 157
Msa0846200 AT4G35580.2 50.625 160 63 3 3 155 9 159 3.83e-44 157
Msa0846200 AT4G35580.1 50.625 160 63 3 3 155 9 159 4.96e-44 157
Msa0846200 AT2G27300.1 46.250 160 74 2 3 161 14 162 7.13e-44 152
Msa0846200 AT1G34180.3 54.762 126 55 1 5 128 18 143 1.08e-43 155
Msa0846200 AT3G44290.1 49.007 151 65 2 5 154 16 155 1.30e-43 152
Msa0846200 AT5G22290.1 48.052 154 67 3 5 156 23 165 4.49e-43 150
Msa0846200 AT1G34180.1 54.762 126 55 1 5 128 18 143 4.53e-43 155
Msa0846200 AT1G33060.1 49.032 155 73 2 3 155 24 174 5.29e-43 156
Msa0846200 AT1G33060.2 49.032 155 73 2 3 155 24 174 5.36e-43 156
Msa0846200 AT3G12910.1 48.780 164 70 5 5 155 23 185 6.20e-43 149
Msa0846200 AT3G49530.2 40.206 194 109 3 3 193 13 202 4.12e-42 150
Msa0846200 AT3G49530.1 40.206 194 109 3 3 193 13 202 7.72e-42 150
Msa0846200 AT1G34180.4 50.725 138 54 2 5 128 18 155 9.04e-42 150
Msa0846200 AT5G09330.5 46.203 158 75 3 2 155 5 156 2.50e-41 149
Msa0846200 AT5G09330.2 46.203 158 75 3 2 155 5 156 2.50e-41 149
Msa0846200 AT5G09330.4 46.203 158 75 3 2 155 5 156 2.50e-41 149
Msa0846200 AT5G09330.3 46.203 158 75 3 2 155 5 156 2.50e-41 149
Msa0846200 AT5G09330.1 46.203 158 75 3 2 155 5 156 2.50e-41 149
Msa0846200 AT1G34180.2 50.725 138 54 2 5 128 18 155 3.42e-41 150
Msa0846200 AT5G64060.1 44.937 158 81 3 3 158 6 159 3.46e-41 146
Msa0846200 AT1G32870.1 48.387 155 74 3 3 155 10 160 7.55e-40 146
Msa0846200 AT1G32870.2 48.387 155 74 3 3 155 10 160 7.84e-40 145
Msa0846200 AT1G32870.3 48.387 155 74 3 3 155 46 196 1.42e-39 145
Msa0846200 AT5G61430.2 54.808 104 45 1 52 155 2 103 9.36e-36 130
Msa0846200 AT1G56010.1 53.465 101 46 1 55 155 5 104 4.40e-35 127
Msa0846200 AT4G10350.2 50.781 128 55 3 56 183 18 137 1.82e-34 127
Msa0846200 AT5G04395.1 45.775 142 61 3 3 128 28 169 7.98e-34 122
Msa0846200 AT5G22380.1 36.316 190 112 6 2 184 4 191 2.25e-32 120
Msa0846200 AT5G64530.1 37.126 167 81 4 1 155 1 155 1.82e-31 116
Msa0846200 AT2G33480.3 55.446 101 41 2 56 156 8 104 2.44e-31 116
Msa0846200 AT3G44350.2 38.690 168 94 5 2 163 4 168 3.29e-31 117
Msa0846200 AT5G64530.2 42.308 130 61 3 1 128 1 118 3.62e-31 114
Msa0846200 AT3G12977.2 47.222 108 54 2 48 155 10 114 9.18e-31 115
Msa0846200 AT3G44350.1 43.284 134 70 3 2 129 4 137 8.12e-30 111
Msa0846200 AT4G28530.2 34.706 170 52 3 2 155 9 135 5.70e-29 113
Msa0846200 AT3G04420.2 44.615 130 68 2 1 126 1 130 6.20e-28 109
Msa0846200 AT3G04420.1 44.615 130 68 2 1 126 1 130 8.43e-28 110
Msa0846200 AT4G01550.1 44.186 129 66 4 6 128 7 135 1.44e-25 105
Msa0846200 AT2G43000.2 39.286 140 67 3 65 204 2 123 3.63e-24 97.4
Msa0846200 AT1G02230.1 43.077 130 64 5 4 126 4 130 1.65e-23 99.0
Msa0846200 AT1G02220.1 42.308 130 68 3 1 126 1 127 2.63e-23 99.0
Msa0846200 AT5G14000.2 37.879 132 78 2 1 130 13 142 7.03e-23 92.8
Msa0846200 AT5G14000.1 33.750 160 93 4 1 157 13 162 7.21e-23 94.4
Msa0846200 AT4G01520.1 29.817 218 136 6 1 210 2 210 1.30e-22 95.5
Msa0846200 AT1G02250.1 42.105 133 67 4 1 126 1 130 5.21e-22 94.7
Msa0846200 AT4G01540.2 39.231 130 72 4 6 128 7 136 3.40e-21 93.2
Msa0846200 AT4G01540.1 39.231 130 72 4 6 128 7 136 3.85e-21 93.6
Msa0846200 AT4G01540.4 39.231 130 72 4 6 128 7 136 3.87e-21 92.8
Msa0846200 AT4G01540.3 39.231 130 72 4 6 128 7 136 4.94e-21 92.8
Msa0846200 AT3G10490.4 49.398 83 39 1 76 158 2 81 5.08e-21 92.0
Msa0846200 AT3G10490.3 49.398 83 39 1 76 158 2 81 5.08e-21 92.0
Msa0846200 AT5G50820.1 36.957 138 71 6 1 132 15 142 2.02e-20 87.4
Msa0846200 AT3G56530.1 28.019 207 130 4 3 196 52 252 2.19e-20 89.7
Msa0846200 AT2G18060.2 45.882 85 40 1 80 164 1 79 1.02e-19 87.0
Msa0846200 AT1G01010.1 40.426 141 64 6 1 126 1 136 1.08e-19 89.0
Msa0846200 AT3G55210.1 31.977 172 95 4 3 160 11 174 6.72e-18 82.0
Msa0846200 AT5G22290.2 48.684 76 27 2 82 156 2 66 1.43e-15 75.1
Msa0846200 AT1G28470.1 30.000 170 88 7 3 142 77 245 1.10e-11 64.7
Msa0846200 AT3G04430.1 34.848 132 72 5 9 127 6 136 1.17e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCAACTGTTTCTGGTTAT+TGG 0.119301 5_4:-25824814 Msa0846200:CDS
CCAAATAGAGCAACTGTTTC+TGG 0.129186 5_4:-25824821 Msa0846200:CDS
ATGCATGAATATAGGTTAAT+TGG 0.177043 5_4:-25824677 Msa0846200:CDS
AGACAAGCCAATAGACAAAT+TGG 0.241711 5_4:-25824647 Msa0846200:CDS
CCAGAAACAGTTGCTCTATT+TGG 0.254998 5_4:+25824821 None:intergenic
GCTGCATAAGTGTTGTTATT+AGG 0.262745 5_4:+25823967 None:intergenic
TCTGATAATATTTGTGATAT+TGG 0.265842 5_4:+25824081 None:intergenic
TGGAACTCCCACCTGGCTTT+AGG 0.278073 5_4:-25825278 Msa0846200:CDS
CATGGACCCAATTTGTCTAT+TGG 0.281830 5_4:+25824640 None:intergenic
TTTGGATACTTTCTCTCTCT+TGG 0.290110 5_4:+25824854 None:intergenic
CTATTTGGTCTCACCCCATT+TGG 0.292598 5_4:+25824836 None:intergenic
AATTTATAGATATCCACTTC+TGG 0.300371 5_4:+25825174 None:intergenic
CAATCTGTCTTGATTCCCTT+TGG 0.309227 5_4:+25824704 None:intergenic
GTGAAACAAAATAGCAGCTT+TGG 0.314170 5_4:-25823925 Msa0846200:CDS
GTCATATTGATTTGATTTGT+TGG 0.344949 5_4:+25824195 None:intergenic
TTTAGTGGGTCTAAGCATAT+TGG 0.378176 5_4:-25824764 Msa0846200:CDS
ATTGGATTATGCATGAATAT+AGG 0.381580 5_4:-25824685 Msa0846200:CDS
CACGACCATGCTCAAGAGGC+TGG 0.382449 5_4:+25821842 None:intergenic
ATTTATAGATATCCACTTCT+GGG 0.409565 5_4:+25825175 None:intergenic
GAAGAACATCACAAAATCAT+TGG 0.420592 5_4:-25824235 Msa0846200:CDS
TCTGTCTTGATTCCCTTTGG+TGG 0.433579 5_4:+25824707 None:intergenic
TTGAAGTGCTCGTGGTAAAG+AGG 0.435376 5_4:+25821889 None:intergenic
TCATATTGATTTGATTTGTT+GGG 0.445689 5_4:+25824196 None:intergenic
TGAAACAAAATAGCAGCTTT+GGG 0.456984 5_4:-25823924 Msa0846200:CDS
AGAGAGAGAAAGTATCCAAA+TGG 0.460421 5_4:-25824851 Msa0846200:CDS
GTGTCATCAGCTAGATGATT+GGG 0.461412 5_4:-25824280 Msa0846200:intron
CCATATTCAAAAGATTAGTA+AGG 0.462105 5_4:+25824115 None:intergenic
TATTGGAGTTAAGAAAGCTT+TGG 0.462561 5_4:-25824747 Msa0846200:CDS
TACTCAATGGAACTCCCACC+TGG 0.471880 5_4:-25825285 None:intergenic
GAGAGAGAAAGTATCCAAAT+GGG 0.475380 5_4:-25824850 Msa0846200:CDS
CAAAGGGAATCAAGACAGAT+TGG 0.478450 5_4:-25824703 Msa0846200:CDS
GGTTAAAAGGCTTACCCTCA+TGG 0.486344 5_4:+25824622 None:intergenic
AATGCAGATAAATCAGACTT+TGG 0.488022 5_4:-25824902 Msa0846200:intron
TGTATTAATTTGAAATTCAA+AGG 0.488952 5_4:+25824041 None:intergenic
TCTGGTTATTGGAAAGCCAC+TGG 0.489239 5_4:-25824803 Msa0846200:CDS
TTAGTAAGGGAACATGTCCT+TGG 0.503531 5_4:+25824129 None:intergenic
ATAATTAGTTCCTCATCAGT+TGG 0.510932 5_4:+25825249 None:intergenic
TTATGGCTTCTAAAGCGTAA+AGG 0.512119 5_4:-25821916 Msa0846200:intron
CAGACTTTGGAGAAAATGAA+TGG 0.513025 5_4:-25824889 Msa0846200:CDS
GACAAGCCAATAGACAAATT+GGG 0.514183 5_4:-25824646 Msa0846200:CDS
ACAGACAAATCAATCTTTAG+TGG 0.516941 5_4:-25824779 Msa0846200:CDS
TATCTATAAATTTGATCCAT+GGG 0.517370 5_4:-25825163 Msa0846200:CDS
TGTGTCATCAGCTAGATGAT+TGG 0.521561 5_4:-25824281 Msa0846200:intron
TGCATCTATCATCCCAGAAG+TGG 0.526246 5_4:-25825187 Msa0846200:CDS
ATATCTATAAATTTGATCCA+TGG 0.529195 5_4:-25825164 Msa0846200:CDS
GATTGATTTGTCTGTTCCAG+TGG 0.533978 5_4:+25824787 None:intergenic
TAGATGATTGGGTCTTATGT+AGG 0.538283 5_4:-25824269 Msa0846200:CDS
CCCCTTTGTAAAACCACAGA+TGG 0.539188 5_4:-25823998 Msa0846200:CDS
AAGAATTAGTGAAATTTCCA+AGG 0.541648 5_4:-25824146 Msa0846200:CDS
CTCGCACGACCATGCTCAAG+AGG 0.547898 5_4:+25821838 None:intergenic
ACGACCATGCTCAAGAGGCT+GGG 0.550432 5_4:+25821843 None:intergenic
TACAAGGGTAGGCCACCAAA+GGG 0.558622 5_4:-25824719 Msa0846200:CDS
GGTTCCCAGCCTCTTGAGCA+TGG 0.560933 5_4:-25821847 Msa0846200:CDS
TAGGTTTCATCCAACTGATG+AGG 0.573797 5_4:-25825259 Msa0846200:CDS
TTACAAGGGTAGGCCACCAA+AGG 0.577490 5_4:-25824720 Msa0846200:CDS
GTTGGATGAAACCTAAAGCC+AGG 0.578152 5_4:+25825267 None:intergenic
TATGTACCTGGTAATTCCCA+TGG 0.581301 5_4:+25825147 None:intergenic
CAGACAAATCAATCTTTAGT+GGG 0.582149 5_4:-25824778 Msa0846200:CDS
ACTTCTGGGATGATAGATGC+AGG 0.582550 5_4:+25825189 None:intergenic
CATATTCAAAAGATTAGTAA+GGG 0.590186 5_4:+25824116 None:intergenic
TTAGGCATTTCAACCATCTG+TGG 0.590855 5_4:+25823985 None:intergenic
TGAAGTGCTCGTGGTAAAGA+GGG 0.595086 5_4:+25821890 None:intergenic
TTTGATCCATGGGAATTACC+AGG 0.600723 5_4:-25825153 Msa0846200:intron
ATATCACAAATATTATCAGA+TGG 0.602546 5_4:-25824078 Msa0846200:CDS
CTCTTGAGCATGGTCGTGCG+AGG 0.609589 5_4:-25821837 Msa0846200:CDS
TTTCAAATTAATACAGCACA+TGG 0.620955 5_4:-25824033 Msa0846200:CDS
AACAGTGAGGCTGAGATGCG+CGG 0.624671 5_4:-25821868 Msa0846200:CDS
CCTCACTGTTGAAGTGCTCG+TGG 0.628193 5_4:+25821881 None:intergenic
GATGAAACCTAAAGCCAGGT+GGG 0.635594 5_4:+25825271 None:intergenic
CAAATTAATACAGCACATGG+TGG 0.638373 5_4:-25824030 Msa0846200:CDS
TAGACAAATTGGGTCCATGA+GGG 0.639673 5_4:-25824636 Msa0846200:intron
ATAGACAAATTGGGTCCATG+AGG 0.667001 5_4:-25824637 Msa0846200:CDS
AGAGAGAAAGTATCCAAATG+GGG 0.678563 5_4:-25824849 Msa0846200:CDS
GGGATGATAGATGCAGGACA+TGG 0.683727 5_4:+25825195 None:intergenic
GGATGAAACCTAAAGCCAGG+TGG 0.686087 5_4:+25825270 None:intergenic
GTGATGTTGCTTGATTACAA+AGG 0.686883 5_4:+25825220 None:intergenic
CCACGAGCACTTCAACAGTG+AGG 0.720211 5_4:-25821881 Msa0846200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATTTTAGATATTAAAT+TGG + chr5_4:25822662-25822681 None:intergenic 10.0%
!!! ACAAATGAATTTTTTTTTTA+GGG + chr5_4:25823554-25823573 None:intergenic 10.0%
!!! ATTATTATTATTTTTGTACA+AGG + chr5_4:25824562-25824581 None:intergenic 10.0%
!! AATATCAATTTATTATGTAG+AGG - chr5_4:25822150-25822169 Msa0846200:intron 15.0%
!!! TAAGAATTTTGTTAATTTGA+AGG - chr5_4:25822727-25822746 Msa0846200:intron 15.0%
!!! AAGAATTTTGTTAATTTGAA+GGG - chr5_4:25822728-25822747 Msa0846200:intron 15.0%
!!! TGTATTAATTTGAAATTCAA+AGG + chr5_4:25823075-25823094 None:intergenic 15.0%
!! AATCTTCAAGATTATTATAT+TGG + chr5_4:25823302-25823321 None:intergenic 15.0%
!!! GGTTTTTCTATTTTTTTTAT+TGG - chr5_4:25823411-25823430 Msa0846200:intron 15.0%
!!! GACAAATGAATTTTTTTTTT+AGG + chr5_4:25823555-25823574 None:intergenic 15.0%
!! AATAGTACTTAATTTAATGT+TGG - chr5_4:25823908-25823927 Msa0846200:intron 15.0%
!! ATAAATAAAGAGTAGTTAAA+CGG - chr5_4:25824800-25824819 Msa0846200:CDS 15.0%
!! ATATCTATAAATTTGATCCA+TGG - chr5_4:25821949-25821968 Msa0846200:intron 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr5_4:25821950-25821969 Msa0846200:intron 20.0%
!! CATATCAATTAAATTCGATA+AGG + chr5_4:25822000-25822019 None:intergenic 20.0%
!!! TTAAAATTTTCGATCTGATA+AGG + chr5_4:25822692-25822711 None:intergenic 20.0%
!!! TCATATTGATTTGATTTGTT+GGG + chr5_4:25822920-25822939 None:intergenic 20.0%
!! CATATTCAAAAGATTAGTAA+GGG + chr5_4:25823000-25823019 None:intergenic 20.0%
!!! TCTTTTGAATATGGATTATA+TGG - chr5_4:25823007-25823026 Msa0846200:intron 20.0%
!!! CTTTTGAATATGGATTATAT+GGG - chr5_4:25823008-25823027 Msa0846200:intron 20.0%
!! TCTGATAATATTTGTGATAT+TGG + chr5_4:25823035-25823054 None:intergenic 20.0%
!! ATATCACAAATATTATCAGA+TGG - chr5_4:25823035-25823054 Msa0846200:intron 20.0%
!!! TGTCATTTTCTATTCTTTTT+TGG + chr5_4:25823245-25823264 None:intergenic 20.0%
!! AGAATAGAAAATGACATTAA+TGG - chr5_4:25823249-25823268 Msa0846200:intron 20.0%
!!! AATGACATTAATGGATTATT+TGG - chr5_4:25823258-25823277 Msa0846200:intron 20.0%
!!! ATGACATTAATGGATTATTT+GGG - chr5_4:25823259-25823278 Msa0846200:intron 20.0%
!! ATAACTGAAAATTCATTCAT+TGG + chr5_4:25823355-25823374 None:intergenic 20.0%
!!! CTGAAATTTTTTTAAAGACT+TGG - chr5_4:25823434-25823453 Msa0846200:intron 20.0%
!!! AAATCTAAGTTTTATTCACA+CGG + chr5_4:25823577-25823596 None:intergenic 20.0%
!! ATATAAAATGACAAGCAAAT+TGG - chr5_4:25823663-25823682 Msa0846200:intron 20.0%
! ATTTATAGATATCCACTTCT+GGG + chr5_4:25821941-25821960 None:intergenic 25.0%
! AATTTATAGATATCCACTTC+TGG + chr5_4:25821942-25821961 None:intergenic 25.0%
!!! TGCGTAGAAATTTTTTACAT+CGG + chr5_4:25822029-25822048 None:intergenic 25.0%
! CAATTTATTATGTAGAGGTT+TGG - chr5_4:25822155-25822174 Msa0846200:intron 25.0%
!!! AAAGCTTTGGTATTTTACAA+GGG - chr5_4:25822379-25822398 Msa0846200:intron 25.0%
! ATTGGATTATGCATGAATAT+AGG - chr5_4:25822428-25822447 Msa0846200:intron 25.0%
! ATGCATGAATATAGGTTAAT+TGG - chr5_4:25822436-25822455 Msa0846200:intron 25.0%
!! GGAATTCTAAAAAGGTTAAA+AGG + chr5_4:25822507-25822526 None:intergenic 25.0%
!! CAAATCTTGGAATTCTAAAA+AGG + chr5_4:25822515-25822534 None:intergenic 25.0%
! ATGATTTACTCAACAAATCT+TGG + chr5_4:25822528-25822547 None:intergenic 25.0%
!!! GTCATATTGATTTGATTTGT+TGG + chr5_4:25822921-25822940 None:intergenic 25.0%
! AAGAATTAGTGAAATTTCCA+AGG - chr5_4:25822967-25822986 Msa0846200:intron 25.0%
! CCATATTCAAAAGATTAGTA+AGG + chr5_4:25823001-25823020 None:intergenic 25.0%
!! CCTTACTAATCTTTTGAATA+TGG - chr5_4:25822998-25823017 Msa0846200:intron 25.0%
! TTTCAAATTAATACAGCACA+TGG - chr5_4:25823080-25823099 Msa0846200:intron 25.0%
!!! ATTAATGGATTATTTGGGTA+TGG - chr5_4:25823264-25823283 Msa0846200:intron 25.0%
! TCAGTTATATTCAAACTGAT+AGG - chr5_4:25823367-25823386 Msa0846200:intron 25.0%
! ACCTATAACTAATATTCTGT+GGG + chr5_4:25823394-25823413 None:intergenic 25.0%
! AACCTATAACTAATATTCTG+TGG + chr5_4:25823395-25823414 None:intergenic 25.0%
! AATGTTAAACAATTGATTGC+TGG - chr5_4:25823502-25823521 Msa0846200:intron 25.0%
!!! TTGCTTGTCATTTTATATAG+TGG + chr5_4:25823661-25823680 None:intergenic 25.0%
!! TTTGATTTAAGTTCCAAATG+TGG - chr5_4:25823692-25823711 Msa0846200:intron 25.0%
! TAATCGAATGATAAATCGTT+TGG - chr5_4:25824034-25824053 Msa0846200:CDS 25.0%
! AATCGAATGATAAATCGTTT+GGG - chr5_4:25824035-25824054 Msa0846200:CDS 25.0%
!!! GTTTTTTCAAGCATTAAACT+CGG + chr5_4:25824066-25824085 None:intergenic 25.0%
!! GACGTATATTCTCTAAAAAT+CGG - chr5_4:25824136-25824155 Msa0846200:CDS 25.0%
! GATGCTTAAAGAAAAATTGT+TGG - chr5_4:25824312-25824331 Msa0846200:intron 25.0%
! GAGATCTATTGTCTAAAAAT+CGG - chr5_4:25824376-25824395 Msa0846200:intron 25.0%
! AATATCAAATGATGACCATA+AGG - chr5_4:25824426-25824445 Msa0846200:intron 25.0%
! ATATCAAATGATGACCATAA+GGG - chr5_4:25824427-25824446 Msa0846200:intron 25.0%
! GAATAAGTCGTAATGTAATT+TGG - chr5_4:25824683-25824702 Msa0846200:CDS 25.0%
! TCAAGTCCATGTAAAAAAAA+AGG - chr5_4:25824843-25824862 Msa0846200:CDS 25.0%
! TCCATGTAAAAAAAAAGGTA+GGG - chr5_4:25824848-25824867 Msa0846200:CDS 25.0%
! AACATCTTGTGTAAAAAACA+TGG + chr5_4:25824953-25824972 None:intergenic 25.0%
!!! CACAATTTTAACTCTATACA+TGG + chr5_4:25825100-25825119 None:intergenic 25.0%
!!! ACGTTCTAAACCATTTTTTA+TGG - chr5_4:25825180-25825199 Msa0846200:CDS 25.0%
ATAATTAGTTCCTCATCAGT+TGG + chr5_4:25821867-25821886 None:intergenic 30.0%
AATGCAGATAAATCAGACTT+TGG - chr5_4:25822211-25822230 Msa0846200:intron 30.0%
ACAGACAAATCAATCTTTAG+TGG - chr5_4:25822334-25822353 Msa0846200:intron 30.0%
CAGACAAATCAATCTTTAGT+GGG - chr5_4:25822335-25822354 Msa0846200:intron 30.0%
TATTGGAGTTAAGAAAGCTT+TGG - chr5_4:25822366-25822385 Msa0846200:intron 30.0%
!! GAAAGCTTTGGTATTTTACA+AGG - chr5_4:25822378-25822397 Msa0846200:intron 30.0%
!! CTGATTAGTCTTGAAATTGT+AGG - chr5_4:25822548-25822567 Msa0846200:intron 30.0%
GAAGAACATCACAAAATCAT+TGG - chr5_4:25822878-25822897 Msa0846200:intron 30.0%
TGAAACAAAATAGCAGCTTT+GGG - chr5_4:25823189-25823208 Msa0846200:intron 30.0%
GAACCAAGTATTTGATCAAA+GGG - chr5_4:25823211-25823230 Msa0846200:intron 30.0%
ATTCCCTTTGATCAAATACT+TGG + chr5_4:25823217-25823236 None:intergenic 30.0%
TCCCACAGAATATTAGTTAT+AGG - chr5_4:25823390-25823409 Msa0846200:intron 30.0%
CATGCTTACGAATCATTTAA+CGG - chr5_4:25823759-25823778 Msa0846200:intron 30.0%
AAACAAGTGACCAAAAAGAA+AGG - chr5_4:25823830-25823849 Msa0846200:intron 30.0%
! GCAATTGTTTCCTTTCTTTT+TGG + chr5_4:25823843-25823862 None:intergenic 30.0%
! TACGATTTGAGTTCAATCAT+CGG + chr5_4:25824006-25824025 None:intergenic 30.0%
GTTTAGAAAAATCCGATTGT+TGG - chr5_4:25824182-25824201 Msa0846200:CDS 30.0%
! GACGTCTATTCTCTAAAAAT+TGG - chr5_4:25824246-25824265 Msa0846200:CDS 30.0%
! TTGCTGACTAAGAAAATACA+AGG + chr5_4:25824597-25824616 None:intergenic 30.0%
TGAAGTTTAGTAAGATCCAT+CGG - chr5_4:25824713-25824732 Msa0846200:CDS 30.0%
ATGAGATAGATAGATACATG+TGG + chr5_4:25824775-25824794 None:intergenic 30.0%
AATAAAGAGTAGTTAAACGG+AGG - chr5_4:25824803-25824822 Msa0846200:CDS 30.0%
ATAAAGAGTAGTTAAACGGA+GGG - chr5_4:25824804-25824823 Msa0846200:CDS 30.0%
GTCCATGTAAAAAAAAAGGT+AGG - chr5_4:25824847-25824866 Msa0846200:CDS 30.0%
!!! ACCCTACCTTTTTTTTTACA+TGG + chr5_4:25824852-25824871 None:intergenic 30.0%
CTTGTGTAAAAAACATGGTA+AGG + chr5_4:25824948-25824967 None:intergenic 30.0%
!! CTCAATTTTAAGAGGGAATT+TGG + chr5_4:25825034-25825053 None:intergenic 30.0%
!!! ACATCGACTCAATTTTAAGA+GGG + chr5_4:25825041-25825060 None:intergenic 30.0%
!!! TACATCGACTCAATTTTAAG+AGG + chr5_4:25825042-25825061 None:intergenic 30.0%
!! GCTTTAGAAGCCATAAAAAA+TGG + chr5_4:25825193-25825212 None:intergenic 30.0%
! GTGATGTTGCTTGATTACAA+AGG + chr5_4:25821896-25821915 None:intergenic 35.0%
TTTATGCTGTCAGTTGTGAT+TGG - chr5_4:25822097-25822116 Msa0846200:intron 35.0%
! CAGACTTTGGAGAAAATGAA+TGG - chr5_4:25822224-25822243 Msa0846200:intron 35.0%
TTTGGATACTTTCTCTCTCT+TGG + chr5_4:25822262-25822281 None:intergenic 35.0%
!! AGAGAGAGAAAGTATCCAAA+TGG - chr5_4:25822262-25822281 Msa0846200:intron 35.0%
!! GAGAGAGAAAGTATCCAAAT+GGG - chr5_4:25822263-25822282 Msa0846200:intron 35.0%
!! AGAGAGAAAGTATCCAAATG+GGG - chr5_4:25822264-25822283 Msa0846200:intron 35.0%
! TTTAGTGGGTCTAAGCATAT+TGG - chr5_4:25822349-25822368 Msa0846200:intron 35.0%
! CTTTGGTATTTTACAAGGGT+AGG - chr5_4:25822383-25822402 Msa0846200:intron 35.0%
AGACAAGCCAATAGACAAAT+TGG - chr5_4:25822466-25822485 Msa0846200:intron 35.0%
GACAAGCCAATAGACAAATT+GGG - chr5_4:25822467-25822486 Msa0846200:intron 35.0%
! TAGATGATTGGGTCTTATGT+AGG - chr5_4:25822844-25822863 Msa0846200:intron 35.0%
CAAATTAATACAGCACATGG+TGG - chr5_4:25823083-25823102 Msa0846200:intron 35.0%
!! ACCATCTGTGGTTTTACAAA+GGG + chr5_4:25823119-25823138 None:intergenic 35.0%
!! AACCATCTGTGGTTTTACAA+AGG + chr5_4:25823120-25823139 None:intergenic 35.0%
! GCTGCATAAGTGTTGTTATT+AGG + chr5_4:25823149-25823168 None:intergenic 35.0%
GTGAAACAAAATAGCAGCTT+TGG - chr5_4:25823188-25823207 Msa0846200:intron 35.0%
GGAACCAAGTATTTGATCAA+AGG - chr5_4:25823210-25823229 Msa0846200:intron 35.0%
TAGGATTGTCATTCCACATT+TGG + chr5_4:25823708-25823727 None:intergenic 35.0%
AGTTTGAACTGGATCACAAT+AGG + chr5_4:25823727-25823746 None:intergenic 35.0%
CATAGGAATTCAGTTTGAAC+TGG + chr5_4:25823738-25823757 None:intergenic 35.0%
ATGATTCGTAAGCATGACAT+AGG + chr5_4:25823755-25823774 None:intergenic 35.0%
!! GTGTTGCTTATCCAAAATGA+TGG - chr5_4:25823938-25823957 Msa0846200:CDS 35.0%
TTGCTTATCCAAAATGATGG+CGG - chr5_4:25823941-25823960 Msa0846200:CDS 35.0%
GAATATACGTCGTAGTAATC+TGG + chr5_4:25824127-25824146 None:intergenic 35.0%
! GTTAAGCTTTGACCAACAAT+CGG + chr5_4:25824197-25824216 None:intergenic 35.0%
CAATAGATCTCGTAGTAATC+AGG + chr5_4:25824367-25824386 None:intergenic 35.0%
! GTTGTTTGGTAGTTGTATTG+CGG - chr5_4:25824486-25824505 Msa0846200:intron 35.0%
! ATTTTCTTAGTCAGCAAGCA+AGG - chr5_4:25824600-25824619 Msa0846200:intron 35.0%
ATGGACTTGATTTACCAATC+TGG + chr5_4:25824833-25824852 None:intergenic 35.0%
AAAAAAAAGGTAGGGTAGTC+TGG - chr5_4:25824856-25824875 Msa0846200:CDS 35.0%
!! TTACACAAGATGTTGTTTCC+AGG - chr5_4:25824959-25824978 Msa0846200:intron 35.0%
GTTGTTGTCACGTGATAAAA+AGG + chr5_4:25824999-25825018 None:intergenic 35.0%
ACTCGATTTAAGTCCATACA+TGG - chr5_4:25825065-25825084 Msa0846200:intron 35.0%
TTCCTTAACATAACCTTAGC+TGG + chr5_4:25825133-25825152 None:intergenic 35.0%
!! TTATGGCTTCTAAAGCGTAA+AGG - chr5_4:25825197-25825216 Msa0846200:CDS 35.0%
TAGGTTTCATCCAACTGATG+AGG - chr5_4:25821854-25821873 Msa0846200:CDS 40.0%
TTTGATCCATGGGAATTACC+AGG - chr5_4:25821960-25821979 Msa0846200:intron 40.0%
TATGTACCTGGTAATTCCCA+TGG + chr5_4:25821969-25821988 None:intergenic 40.0%
AAGGCGATAACATATGTACC+TGG + chr5_4:25821981-25822000 None:intergenic 40.0%
CCAGAAACAGTTGCTCTATT+TGG + chr5_4:25822295-25822314 None:intergenic 40.0%
CCAAATAGAGCAACTGTTTC+TGG - chr5_4:25822292-25822311 Msa0846200:intron 40.0%
!! GAGCAACTGTTTCTGGTTAT+TGG - chr5_4:25822299-25822318 Msa0846200:intron 40.0%
!! GATTGATTTGTCTGTTCCAG+TGG + chr5_4:25822329-25822348 None:intergenic 40.0%
CAATCTGTCTTGATTCCCTT+TGG + chr5_4:25822412-25822431 None:intergenic 40.0%
CAAAGGGAATCAAGACAGAT+TGG - chr5_4:25822410-25822429 Msa0846200:intron 40.0%
CATGGACCCAATTTGTCTAT+TGG + chr5_4:25822476-25822495 None:intergenic 40.0%
ATAGACAAATTGGGTCCATG+AGG - chr5_4:25822476-25822495 Msa0846200:intron 40.0%
TAGACAAATTGGGTCCATGA+GGG - chr5_4:25822477-25822496 Msa0846200:intron 40.0%
GACACATGAACACAAAGTCA+AGG + chr5_4:25822818-25822837 None:intergenic 40.0%
TGTGTCATCAGCTAGATGAT+TGG - chr5_4:25822832-25822851 Msa0846200:intron 40.0%
GTGTCATCAGCTAGATGATT+GGG - chr5_4:25822833-25822852 Msa0846200:intron 40.0%
TTAGTAAGGGAACATGTCCT+TGG + chr5_4:25822987-25823006 None:intergenic 40.0%
!! CCATCTGTGGTTTTACAAAG+GGG + chr5_4:25823118-25823137 None:intergenic 40.0%
TTAGGCATTTCAACCATCTG+TGG + chr5_4:25823131-25823150 None:intergenic 40.0%
GAATAGACGTCGTAGTAATC+TGG + chr5_4:25824237-25824256 None:intergenic 40.0%
CATAAGGGAATGACGTGTTA+GGG - chr5_4:25824442-25824461 Msa0846200:intron 40.0%
AGTTTAGTAAGATCCATCGG+TGG - chr5_4:25824716-25824735 Msa0846200:CDS 40.0%
GTTTAGTAAGATCCATCGGT+GGG - chr5_4:25824717-25824736 Msa0846200:CDS 40.0%
CGTACAATACACCAAATGGT+GGG + chr5_4:25824922-25824941 None:intergenic 40.0%
GTTGCGTACAATACACCAAA+TGG + chr5_4:25824926-25824945 None:intergenic 40.0%
AAGGTCATAAGTTCAAGTCC+TGG + chr5_4:25824980-25824999 None:intergenic 40.0%
ATGGACTCGATTTCCATGTA+TGG + chr5_4:25825081-25825100 None:intergenic 40.0%
GTGCATATTAATGCCAGCTA+AGG - chr5_4:25825117-25825136 Msa0846200:intron 40.0%
TGCCAGCTAAGGTTATGTTA+AGG - chr5_4:25825128-25825147 Msa0846200:intron 40.0%
! GTTAAGGAACCAAAGTGCTA+TGG - chr5_4:25825144-25825163 Msa0846200:intron 40.0%
! GTTTAGAACGTAGTTCAGAG+CGG + chr5_4:25825171-25825190 None:intergenic 40.0%
GATGAAACCTAAAGCCAGGT+GGG + chr5_4:25821845-25821864 None:intergenic 45.0%
GTTGGATGAAACCTAAAGCC+AGG + chr5_4:25821849-25821868 None:intergenic 45.0%
!! ACTTCTGGGATGATAGATGC+AGG + chr5_4:25821927-25821946 None:intergenic 45.0%
TGCATCTATCATCCCAGAAG+TGG - chr5_4:25821926-25821945 Msa0846200:intron 45.0%
CTATTTGGTCTCACCCCATT+TGG + chr5_4:25822280-25822299 None:intergenic 45.0%
TCTGGTTATTGGAAAGCCAC+TGG - chr5_4:25822310-25822329 Msa0846200:intron 45.0%
TCTGTCTTGATTCCCTTTGG+TGG + chr5_4:25822409-25822428 None:intergenic 45.0%
GGTTAAAAGGCTTACCCTCA+TGG + chr5_4:25822494-25822513 None:intergenic 45.0%
CCCCTTTGTAAAACCACAGA+TGG - chr5_4:25823115-25823134 Msa0846200:intron 45.0%
! GTAATCTGGAGTTTGGCATG+AGG + chr5_4:25824113-25824132 None:intergenic 45.0%
! CGTCGTAGTAATCTGGAGTT+TGG + chr5_4:25824120-25824139 None:intergenic 45.0%
! GTAATCTGGAGTTTAGCACG+AGG + chr5_4:25824223-25824242 None:intergenic 45.0%
TCTCGTAGTAATCAGGAGTC+TGG + chr5_4:25824360-25824379 None:intergenic 45.0%
CCTAACACGTCATTCCCTTA+TGG + chr5_4:25824444-25824463 None:intergenic 45.0%
CCATAAGGGAATGACGTGTT+AGG - chr5_4:25824441-25824460 Msa0846200:intron 45.0%
TAATGTGCGCATGCGTTGTT+TGG - chr5_4:25824472-25824491 Msa0846200:intron 45.0%
TAATAAGTGCATCCCACCGA+TGG + chr5_4:25824732-25824751 None:intergenic 45.0%
!! TAAACGGAGGGTATCCAGAT+TGG - chr5_4:25824816-25824835 Msa0846200:CDS 45.0%
GCGTACAATACACCAAATGG+TGG + chr5_4:25824923-25824942 None:intergenic 45.0%
! TGAAGTGCTCGTGGTAAAGA+GGG + chr5_4:25825226-25825245 None:intergenic 45.0%
! TTGAAGTGCTCGTGGTAAAG+AGG + chr5_4:25825227-25825246 None:intergenic 45.0%
!! GATAAAATTATATATATAAT+TGG + chr5_4:25822057-25822076 None:intergenic 5.0%
GGATGAAACCTAAAGCCAGG+TGG + chr5_4:25821846-25821865 None:intergenic 50.0%
GGGATGATAGATGCAGGACA+TGG + chr5_4:25821921-25821940 None:intergenic 50.0%
TTACAAGGGTAGGCCACCAA+AGG - chr5_4:25822393-25822412 Msa0846200:intron 50.0%
TACAAGGGTAGGCCACCAAA+GGG - chr5_4:25822394-25822413 Msa0846200:intron 50.0%
! ACACACTGCCGCCATCATTT+TGG + chr5_4:25823952-25823971 None:intergenic 50.0%
!! ATGATGGCGGCAGTGTGTAA+TGG - chr5_4:25823954-25823973 Msa0846200:CDS 50.0%
AAGGGAATGACGTGTTAGGG+AGG - chr5_4:25824445-25824464 Msa0846200:intron 50.0%
GAATGACGTGTTAGGGAGGT+CGG - chr5_4:25824449-25824468 Msa0846200:intron 50.0%
TAGTTGTATTGCGGCTGCTG+AGG - chr5_4:25824495-25824514 Msa0846200:intron 50.0%
CTCTCGCATACGCATGGTTT+GGG - chr5_4:25824889-25824908 Msa0846200:CDS 50.0%
! GCATACGCATGGTTTGGGAA+GGG - chr5_4:25824894-25824913 Msa0846200:CDS 50.0%
! CATACGCATGGTTTGGGAAG+GGG - chr5_4:25824895-25824914 Msa0846200:CDS 50.0%
! TGGAACTCCCACCTGGCTTT+AGG - chr5_4:25821835-25821854 Msa0846200:CDS 55.0%
! GGCGTCGAGCAGTTTGATGT+TGG - chr5_4:25822569-25822588 Msa0846200:intron 55.0%
GTAATCAGGAGTCTGGCACG+AGG + chr5_4:25824353-25824372 None:intergenic 55.0%
CTGAAGCTCTCGCATACGCA+TGG - chr5_4:25824883-25824902 Msa0846200:CDS 55.0%
GCTCTCGCATACGCATGGTT+TGG - chr5_4:25824888-25824907 Msa0846200:CDS 55.0%
! CGCATACGCATGGTTTGGGA+AGG - chr5_4:25824893-25824912 Msa0846200:CDS 55.0%
CAGAGCGGTCCATAGCACTT+TGG + chr5_4:25825156-25825175 None:intergenic 55.0%
! CCTCACTGTTGAAGTGCTCG+TGG + chr5_4:25825235-25825254 None:intergenic 55.0%
CCACGAGCACTTCAACAGTG+AGG - chr5_4:25825232-25825251 Msa0846200:CDS 55.0%
AACAGTGAGGCTGAGATGCG+CGG - chr5_4:25825245-25825264 Msa0846200:CDS 55.0%
ACGACCATGCTCAAGAGGCT+GGG + chr5_4:25825273-25825292 None:intergenic 55.0%
TGGGAAGGGGTCCCACCATT+TGG - chr5_4:25824908-25824927 Msa0846200:intron 60.0%
GGTTCCCAGCCTCTTGAGCA+TGG - chr5_4:25825266-25825285 Msa0846200:CDS 60.0%
CACGACCATGCTCAAGAGGC+TGG + chr5_4:25825274-25825293 None:intergenic 60.0%
CTCGCACGACCATGCTCAAG+AGG + chr5_4:25825278-25825297 None:intergenic 60.0%
CTCTTGAGCATGGTCGTGCG+AGG - chr5_4:25825276-25825295 Msa0846200:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 25821834 25825301 25821834 ID=Msa0846200;Name=Msa0846200
chr5_4 mRNA 25821834 25825301 25821834 ID=Msa0846200-mRNA-1;Parent=Msa0846200;Name=Msa0846200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.33|0|0.75|1|1|4|0|297
chr5_4 exon 25825154 25825301 25825154 ID=Msa0846200-mRNA-1:exon:10233;Parent=Msa0846200-mRNA-1
chr5_4 exon 25824637 25824917 25824637 ID=Msa0846200-mRNA-1:exon:10232;Parent=Msa0846200-mRNA-1
chr5_4 exon 25823918 25824292 25823918 ID=Msa0846200-mRNA-1:exon:10231;Parent=Msa0846200-mRNA-1
chr5_4 exon 25821834 25821923 25821834 ID=Msa0846200-mRNA-1:exon:10230;Parent=Msa0846200-mRNA-1
chr5_4 CDS 25825154 25825301 25825154 ID=Msa0846200-mRNA-1:cds;Parent=Msa0846200-mRNA-1
chr5_4 CDS 25824637 25824917 25824637 ID=Msa0846200-mRNA-1:cds;Parent=Msa0846200-mRNA-1
chr5_4 CDS 25823918 25824292 25823918 ID=Msa0846200-mRNA-1:cds;Parent=Msa0846200-mRNA-1
chr5_4 CDS 25821834 25821923 25821834 ID=Msa0846200-mRNA-1:cds;Parent=Msa0846200-mRNA-1
Gene Sequence

>Msa0846200

ATGGAACTCCCACCTGGCTTTAGGTTTCATCCAACTGATGAGGAACTAATTATGTATTACCTTTGTAATCAAGCAACATCACAACCATGTCCTGCATCTATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTACCAGATAAATCAGACTTTGGAGAAAATGAATGGTATTTTTTTACTCCAAGAGAGAGAAAGTATCCAAATGGGGTGAGACCAAATAGAGCAACTGTTTCTGGTTATTGGAAAGCCACTGGAACAGACAAATCAATCTTTAGTGGGTCTAAGCATATTGGAGTTAAGAAAGCTTTGGTATTTTACAAGGGTAGGCCACCAAAGGGAATCAAGACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAGACAAGCCAATAGACAAATTGGGTCCATGAGGCTAGATGATTGGGTCTTATGTAGGATCTATAAGAAGAAGAACATCACAAAATCATTGGAGACAAATGAAGACTACCCAACAAATCAAATCAATATGACACAAACAAATATTCATGATAGTGAACAAGAATTAGTGAAATTTCCAAGGACATGTTCCCTTACTAATCTTTTGAATATGGATTATATGGGACCAATATCACAAATATTATCAGATGGATCATATAATTCAACCTTTGAATTTCAAATTAATACAGCACATGGTGGAACAATAGACCCCTTTGTAAAACCACAGATGGTTGAAATGCCTAATAACAACACTTATGCAGCTGATTTAGAGAAGTACAATGTGAAACAAAATAGCAGCTTTGGGAACCAACGTAAAGGATTCCCTCTTTACCACGAGCACTTCAACAGTGAGGCTGAGATGCGCGGTTCCCAGCCTCTTGAGCATGGTCGTGCGAGGTAG
Protein sequence

>Msa0846200

MELPPGFRFHPTDEELIMYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRRQANRQIGSMRLDDWVLCRIYKKKNITKSLETNEDYPTNQINMTQTNIHDSEQELVKFPRTCSLTNLLNMDYMGPISQILSDGSYNSTFEFQINTAHGGTIDPFVKPQMVEMPNNNTYAADLEKYNVKQNSSFGNQRKGFPLYHEHFNSEAEMRGSQPLEHGRAR*