Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847090 | XP_003614113.1 | 96.063 | 508 | 20 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847090 | sp|O04862|FOLM_PEA | 91.321 | 507 | 44 | 0 | 1 | 507 | 1 | 507 | 0.0 | 955 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847090 | G7JY17 | 96.063 | 508 | 20 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162170 | Msa0847090 | 0.807751 | 4.337288e-50 | -8.615850e-47 |
| Msa0847090 | Msa1278120 | 0.804627 | 1.972745e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847090 | MtrunA17_Chr5g0419361 | 96.063 | 508 | 20 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847090 | AT4G30000.1 | 69.639 | 471 | 143 | 0 | 37 | 507 | 80 | 550 | 0.0 | 716 |
| Msa0847090 | AT4G30000.2 | 69.593 | 467 | 142 | 0 | 37 | 503 | 80 | 546 | 0.0 | 706 |
| Msa0847090 | AT1G69190.1 | 68.790 | 471 | 143 | 4 | 41 | 507 | 9 | 479 | 0.0 | 681 |
Find 145 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGTTTACATTACCTTTA+AGG | 0.132682 | 5_4:+28485296 | None:intergenic |
| GTTAGATTCAAATATGTTTA+AGG | 0.171592 | 5_4:-28483484 | Msa0847090:CDS |
| TGCAAACATTATCATATTTC+AGG | 0.184077 | 5_4:+28483385 | None:intergenic |
| CAGTACCTCATGAAAGAATT+TGG | 0.210934 | 5_4:-28484043 | Msa0847090:CDS |
| GGCCCCTTTGATGGATTTAC+TGG | 0.232315 | 5_4:-28484003 | Msa0847090:CDS |
| TACCTTCTAGCCTATGTATT+TGG | 0.236946 | 5_4:-28482902 | Msa0847090:three_prime_UTR |
| GCTGCAAGAAACTACCTTAA+AGG | 0.265009 | 5_4:-28485310 | Msa0847090:intron |
| TCTCATGCTCCTATACTAAT+TGG | 0.273694 | 5_4:-28483183 | Msa0847090:CDS |
| TCCTTCTTGCATAGGTGCTT+TGG | 0.282383 | 5_4:-28485809 | Msa0847090:five_prime_UTR |
| ACATACCTTCCTCTCCAATA+AGG | 0.288708 | 5_4:+28483883 | None:intergenic |
| TTAGGTGGAGAATCCCTTAT+TGG | 0.301459 | 5_4:-28483897 | Msa0847090:CDS |
| GAAATCTCTTGTCTAATATC+AGG | 0.302936 | 5_4:+28483225 | None:intergenic |
| TTGCAAATGTCTTGCTTGAT+TGG | 0.312396 | 5_4:-28483845 | Msa0847090:CDS |
| GGCTATGATGGTTTCAGTAC+TGG | 0.328130 | 5_4:-28482949 | Msa0847090:three_prime_UTR |
| ATTATTATGGACCCTGGAAT+TGG | 0.347226 | 5_4:-28483294 | Msa0847090:CDS |
| CCCGGCATGGAGGATTATTA+TGG | 0.354512 | 5_4:-28483307 | Msa0847090:CDS |
| TGACTTTCTCATCAATTTCA+AGG | 0.357624 | 5_4:+28484310 | None:intergenic |
| CTTGAAGGTCCAATTAGTAT+AGG | 0.358491 | 5_4:+28483174 | None:intergenic |
| TGAAGTTCAACAGAGGAGTT+TGG | 0.374311 | 5_4:+28484404 | None:intergenic |
| TGAGGAAGTAGTGATTGCTT+TGG | 0.379928 | 5_4:-28484372 | Msa0847090:CDS |
| GAGGAAGTAGTGATTGCTTT+GGG | 0.382617 | 5_4:-28484371 | Msa0847090:CDS |
| TTCTTTGAGAATCCAATTCC+AGG | 0.387675 | 5_4:+28483282 | None:intergenic |
| CATACCTTCCTCTCCAATAA+GGG | 0.394402 | 5_4:+28483884 | None:intergenic |
| TGGGCCGTACTGACGGTATA+AGG | 0.399861 | 5_4:-28484136 | Msa0847090:CDS |
| TGCTGTTACTGCCGGTGTGT+TGG | 0.407103 | 5_4:-28483085 | Msa0847090:CDS |
| TTACTGCCGGTGTGTTGGGT+GGG | 0.409196 | 5_4:-28483080 | Msa0847090:CDS |
| GCTGTTACTGCCGGTGTGTT+GGG | 0.411646 | 5_4:-28483084 | Msa0847090:CDS |
| AGTTAATTGTCTGGCTATGA+TGG | 0.416957 | 5_4:-28482961 | Msa0847090:three_prime_UTR |
| TTCAAATATGTTTAAGGTCA+TGG | 0.420172 | 5_4:-28483478 | Msa0847090:CDS |
| AATTTGGACAGTTAATTGTC+TGG | 0.426023 | 5_4:-28482970 | Msa0847090:three_prime_UTR |
| CATGAAGTACATTGAGTTGA+AGG | 0.427811 | 5_4:-28482779 | Msa0847090:three_prime_UTR |
| GCTGACTCCTGCGCGCGCTC+AGG | 0.428229 | 5_4:+28485338 | None:intergenic |
| CTTATAAACGATGTATCTGC+TGG | 0.432582 | 5_4:-28483510 | Msa0847090:CDS |
| GTATTGACATTACAGCTTCC+AGG | 0.432692 | 5_4:+28483613 | None:intergenic |
| TACATAGGCTAGAAGGTAGC+TGG | 0.435965 | 5_4:+28482907 | None:intergenic |
| GAAAACTGAAGACAATTTAG+AGG | 0.439828 | 5_4:-28483262 | Msa0847090:CDS |
| TTGAAATTGATGAGAAAGTC+AGG | 0.441280 | 5_4:-28484308 | Msa0847090:CDS |
| AGTACCTCATGAAAGAATTT+GGG | 0.441987 | 5_4:-28484042 | Msa0847090:CDS |
| CATCAGAAGCAGTGCGCAGA+GGG | 0.452701 | 5_4:-28483539 | Msa0847090:CDS |
| GACATTACAGCTTCCAGGAC+AGG | 0.454459 | 5_4:+28483618 | None:intergenic |
| TTAAGCTTTGCGATGCAATT+CGG | 0.456357 | 5_4:-28483011 | Msa0847090:CDS |
| TGGTCCAAGGCCAATGGACT+TGG | 0.458334 | 5_4:-28484111 | Msa0847090:CDS |
| GGCAGAAATGTCGGGAATCC+CGG | 0.460456 | 5_4:-28483325 | Msa0847090:CDS |
| TTCCCAGTAAATCCATCAAA+GGG | 0.469536 | 5_4:+28484000 | None:intergenic |
| TTATGAATCTTGAGTTGGCT+TGG | 0.472915 | 5_4:+28485759 | None:intergenic |
| GGTGCTGATATAATTGATAT+CGG | 0.477866 | 5_4:-28483705 | Msa0847090:CDS |
| CGATAGACTACAAAACTTCA+AGG | 0.479819 | 5_4:-28484336 | Msa0847090:CDS |
| ATGTCCAAGTCCATTGGCCT+TGG | 0.480285 | 5_4:+28484107 | None:intergenic |
| TCATCATTCTGCATTGTACA+AGG | 0.485422 | 5_4:+28483411 | None:intergenic |
| ATCTCTGTCGAAGAAGAGTT+AGG | 0.485920 | 5_4:-28483651 | Msa0847090:CDS |
| CCATGATGCATTTAGTCCAC+CGG | 0.486955 | 5_4:+28483926 | None:intergenic |
| TGTGAAGTCTGCTGTTTCGC+AGG | 0.487726 | 5_4:-28483748 | Msa0847090:CDS |
| CTCATGTGCATTGCAACATA+AGG | 0.489603 | 5_4:+28483441 | None:intergenic |
| GTTACTGCCGGTGTGTTGGG+TGG | 0.490247 | 5_4:-28483081 | Msa0847090:CDS |
| GTAACAGCAGCAATGGTAGC+AGG | 0.490567 | 5_4:+28483099 | None:intergenic |
| TCAAGCAAGACATTTGCAAC+AGG | 0.490734 | 5_4:+28483849 | None:intergenic |
| TACTGCCGGTGTGTTGGGTG+GGG | 0.490861 | 5_4:-28483079 | Msa0847090:CDS |
| AGTCTGCTGTTTCGCAGGCT+CGG | 0.491298 | 5_4:-28483743 | Msa0847090:CDS |
| AATAAAATGTCCAAGTCCAT+TGG | 0.499237 | 5_4:+28484101 | None:intergenic |
| ATCAAAGGGGCCATGACAAA+AGG | 0.499817 | 5_4:+28484014 | None:intergenic |
| GTTAGAGAGGCAGAAATGTC+GGG | 0.505013 | 5_4:-28483333 | Msa0847090:CDS |
| GTAAGAGCTGTTACTAAACT+CGG | 0.507748 | 5_4:-28484203 | Msa0847090:CDS |
| AGCCAAATACATAGGCTAGA+AGG | 0.509960 | 5_4:+28482900 | None:intergenic |
| TGCTCAGTCTACTCGGCCGA+TGG | 0.510263 | 5_4:-28483682 | Msa0847090:CDS |
| CTCGCCCTTCTGCAGTTGAG+AGG | 0.510611 | 5_4:-28483125 | Msa0847090:CDS |
| GGATCCCTCTCAACTGCAGA+AGG | 0.513133 | 5_4:+28483120 | None:intergenic |
| CTGAGTTGAGGAAGCGAGGT+TGG | 0.516557 | 5_4:+28484228 | None:intergenic |
| ACCATTGCTGCTGTTACTGC+CGG | 0.517492 | 5_4:-28483093 | Msa0847090:CDS |
| AGGTAGATTAATCCCTGTCC+TGG | 0.518253 | 5_4:-28483631 | Msa0847090:CDS |
| ATATCGGTGCTCAGTCTACT+CGG | 0.518529 | 5_4:-28483689 | Msa0847090:CDS |
| ATCTTGAGTTGGCTTGGAAG+AGG | 0.520832 | 5_4:+28485765 | None:intergenic |
| TAAGTATACTCATCTGAGAA+AGG | 0.520941 | 5_4:+28485365 | None:intergenic |
| CTTATGTTGCAATGCACATG+AGG | 0.525825 | 5_4:-28483440 | Msa0847090:CDS |
| TCCATAATAATCCTCCATGC+CGG | 0.526016 | 5_4:+28483306 | None:intergenic |
| CGGTGGACTAAATGCATCAT+GGG | 0.526133 | 5_4:-28483925 | Msa0847090:CDS |
| CCATAATAATCCTCCATGCC+GGG | 0.527864 | 5_4:+28483307 | None:intergenic |
| CCGGTGGACTAAATGCATCA+TGG | 0.533304 | 5_4:-28483926 | Msa0847090:CDS |
| GTCGCGAAGAACATTGGTCA+TGG | 0.534897 | 5_4:-28483823 | Msa0847090:CDS |
| TCGCCCTTCTGCAGTTGAGA+GGG | 0.537131 | 5_4:-28483124 | Msa0847090:CDS |
| GGGGATTCTTAATTTGACTC+CGG | 0.539045 | 5_4:-28483802 | Msa0847090:CDS |
| GGCAGAAGGAAAACTCATAT+CGG | 0.539405 | 5_4:-28483586 | Msa0847090:CDS |
| ATATCCTAAAACTCTTCAGC+TGG | 0.539440 | 5_4:+28485411 | None:intergenic |
| GGTTAGAGAGGCAGAAATGT+CGG | 0.541271 | 5_4:-28483334 | Msa0847090:CDS |
| ATAATGATACAGTTGCTAGC+TGG | 0.548830 | 5_4:-28483968 | Msa0847090:CDS |
| TATTGGCTTCGATACACGTC+GGG | 0.550488 | 5_4:-28485391 | Msa0847090:five_prime_UTR |
| GAATCCCTTATTGGAGAGGA+AGG | 0.553444 | 5_4:-28483888 | Msa0847090:CDS |
| CGTACTGACGGTATAAGGTA+TGG | 0.555471 | 5_4:-28484131 | Msa0847090:CDS |
| TGATTGGTCGCGAAGAACAT+TGG | 0.556713 | 5_4:-28483829 | Msa0847090:CDS |
| TCGCGAAGAACATTGGTCAT+GGG | 0.557979 | 5_4:-28483822 | Msa0847090:CDS |
| GAAATATGATAATGTTTGCA+AGG | 0.562167 | 5_4:-28483382 | Msa0847090:CDS |
| TCTTTGAGAATCCAATTCCA+GGG | 0.565717 | 5_4:+28483283 | None:intergenic |
| ATCCTCAGAATTATACGCGC+AGG | 0.569632 | 5_4:-28483355 | Msa0847090:CDS |
| GTTCCCAGTAAATCCATCAA+AGG | 0.571018 | 5_4:+28483999 | None:intergenic |
| GACAATTTAGAGGTCCTCAC+AGG | 0.571113 | 5_4:-28483252 | Msa0847090:CDS |
| GCCCCTTTGATGGATTTACT+GGG | 0.573888 | 5_4:-28484002 | Msa0847090:CDS |
| ATTATACGCGCAGGTTAGAG+AGG | 0.575162 | 5_4:-28483346 | Msa0847090:CDS |
| CGTTCCCAAATTCTTTCATG+AGG | 0.575848 | 5_4:+28484038 | None:intergenic |
| ACAGAGATTCTCGACGCCAT+CGG | 0.576694 | 5_4:+28483666 | None:intergenic |
| ATTGCTTTGGGAAGTAATGT+TGG | 0.578130 | 5_4:-28484359 | Msa0847090:CDS |
| CAAAAGAATTGAGAAGGACA+TGG | 0.578669 | 5_4:-28484156 | Msa0847090:CDS |
| AAGGTATGGTCCAAGGCCAA+TGG | 0.579739 | 5_4:-28484117 | Msa0847090:CDS |
| CGCGAAGAACATTGGTCATG+GGG | 0.583740 | 5_4:-28483821 | Msa0847090:CDS |
| TGGAGGATTATTATGGACCC+TGG | 0.584512 | 5_4:-28483300 | Msa0847090:CDS |
| CATACCTTATACCGTCAGTA+CGG | 0.586658 | 5_4:+28484132 | None:intergenic |
| TTGCGTGAAGCCAAATACAT+AGG | 0.587450 | 5_4:+28482892 | None:intergenic |
| ACATTACAGCTTCCAGGACA+GGG | 0.587554 | 5_4:+28483619 | None:intergenic |
| AAGGACATGGGCCGTACTGA+CGG | 0.590366 | 5_4:-28484143 | Msa0847090:CDS |
| TGCACTCAAAAGAATTGAGA+AGG | 0.591758 | 5_4:-28484162 | Msa0847090:CDS |
| ACCGGCAGTAACAGCAGCAA+TGG | 0.592145 | 5_4:+28483092 | None:intergenic |
| TCCAAAGCACCTATGCAAGA+AGG | 0.598018 | 5_4:+28485808 | None:intergenic |
| AAACAGCAGACTTCACAGAC+TGG | 0.598220 | 5_4:+28483754 | None:intergenic |
| GCATCAGAAGCAGTGCGCAG+AGG | 0.600270 | 5_4:-28483540 | Msa0847090:CDS |
| ACATAGGCTAGAAGGTAGCT+GGG | 0.602865 | 5_4:+28482908 | None:intergenic |
| ATGCATTTAGTCCACCGGAA+TGG | 0.606923 | 5_4:+28483931 | None:intergenic |
| ATGTCAATACCTGAGGCAGA+AGG | 0.607903 | 5_4:-28483600 | Msa0847090:CDS |
| TTAAGTACCTGAGCGCGCGC+AGG | 0.609739 | 5_4:-28485345 | Msa0847090:CDS |
| CAGCTCTTACTGCTGAGTTG+AGG | 0.610637 | 5_4:+28484216 | None:intergenic |
| TTATAAACGATGTATCTGCT+GGG | 0.612784 | 5_4:-28483509 | Msa0847090:CDS |
| ACGGTATAAGGTATGGTCCA+AGG | 0.616302 | 5_4:-28484124 | Msa0847090:CDS |
| TAAGAGCTGTTACTAAACTC+GGG | 0.618873 | 5_4:-28484202 | Msa0847090:CDS |
| TAGTATAGGAGCATGAGAGA+TGG | 0.625351 | 5_4:+28483188 | None:intergenic |
| AACCTGCGCGTATAATTCTG+AGG | 0.633515 | 5_4:+28483353 | None:intergenic |
| TGGAGAATCCCTTATTGGAG+AGG | 0.635835 | 5_4:-28483892 | Msa0847090:CDS |
| ATTAGCCCCACCCAACACAC+CGG | 0.636124 | 5_4:+28483074 | None:intergenic |
| AAATGTCGGGAATCCCGGCA+TGG | 0.636653 | 5_4:-28483320 | Msa0847090:CDS |
| AGTGCAGACAATAATTCATG+TGG | 0.636663 | 5_4:+28484179 | None:intergenic |
| TTATGTTGCAATGCACATGA+GGG | 0.639561 | 5_4:-28483439 | Msa0847090:CDS |
| AAAAGAATTGAGAAGGACAT+GGG | 0.639820 | 5_4:-28484155 | Msa0847090:CDS |
| GATCCCTCTCAACTGCAGAA+GGG | 0.640024 | 5_4:+28483121 | None:intergenic |
| ACTGCTGAGTTGAGGAAGCG+AGG | 0.643340 | 5_4:+28484224 | None:intergenic |
| GGCTCGGTTGATGATATCAG+AGG | 0.645667 | 5_4:-28483727 | Msa0847090:CDS |
| TGAACTTCACACTCGAGATG+AGG | 0.650070 | 5_4:-28484390 | Msa0847090:CDS |
| AGCTGTAATGTCAATACCTG+AGG | 0.663866 | 5_4:-28483607 | Msa0847090:CDS |
| TGTCGGGAATCCCGGCATGG+AGG | 0.676925 | 5_4:-28483317 | Msa0847090:CDS |
| AGAAGGAAAACTCATATCGG+TGG | 0.679059 | 5_4:-28483583 | Msa0847090:CDS |
| CGGTGTTCTATATATGACAA+CGG | 0.681423 | 5_4:+28482830 | None:intergenic |
| GCTCGGTTGATGATATCAGA+GGG | 0.685069 | 5_4:-28483726 | Msa0847090:CDS |
| GGTTGGTCAGTAACATACGC+TGG | 0.694789 | 5_4:+28484245 | None:intergenic |
| TAATATCAGGTATTCCTGTG+AGG | 0.707150 | 5_4:+28483238 | None:intergenic |
| TCGAGTGTGAAGTTCAACAG+AGG | 0.712636 | 5_4:+28484397 | None:intergenic |
| ATCAGAAGCAGTGCGCAGAG+GGG | 0.714462 | 5_4:-28483538 | Msa0847090:CDS |
| CTATTGCAGTGTCAGCATTG+CGG | 0.718234 | 5_4:+28482810 | None:intergenic |
| TATGTTGCAATGCACATGAG+GGG | 0.732291 | 5_4:-28483438 | Msa0847090:CDS |
| TCCCAGTAAATCCATCAAAG+GGG | 0.734725 | 5_4:+28484001 | None:intergenic |
| ATATTGGCTTCGATACACGT+CGG | 0.736952 | 5_4:-28485392 | Msa0847090:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAAAAAATAAAAAA+TGG | + | chr5_4:28485802-28485821 | None:intergenic | 0.0% |
| !! | ATAAAATAATATTATTTGAG+AGG | - | chr5_4:28483638-28483657 | Msa0847090:CDS | 10.0% |
| !! | TAAAATAATATTATTTGAGA+GGG | - | chr5_4:28483639-28483658 | Msa0847090:CDS | 10.0% |
| !! | AAATAATGTTTGTAAATAAT+AGG | + | chr5_4:28484028-28484047 | None:intergenic | 10.0% |
| !! | TTGAATTATTATAACTAAAG+AGG | - | chr5_4:28483612-28483631 | Msa0847090:CDS | 15.0% |
| !!! | TTTATTAACTACACATTTTT+AGG | - | chr5_4:28483697-28483716 | Msa0847090:CDS | 15.0% |
| !!! | TTATTAACTACACATTTTTA+GGG | - | chr5_4:28483698-28483717 | Msa0847090:CDS | 15.0% |
| !!! | ATTTTTTTCTCTTTGTTTAA+AGG | - | chr5_4:28483754-28483773 | Msa0847090:CDS | 15.0% |
| !!! | TTATTTTATGAATCTTGAGT+TGG | + | chr5_4:28482752-28482771 | None:intergenic | 20.0% |
| !! | TGATAAGAAGTAAAAAGAAA+TGG | + | chr5_4:28482797-28482816 | None:intergenic | 20.0% |
| !!! | CTAAGAAAAGAAATTTTCTT+AGG | + | chr5_4:28482910-28482929 | None:intergenic | 20.0% |
| !!! | CTAAGAAAATTTCTTTTCTT+AGG | - | chr5_4:28482908-28482927 | Msa0847090:three_prime_UTR | 20.0% |
| !! | AATAGCAATCAAAAACAATA+AGG | + | chr5_4:28482979-28482998 | None:intergenic | 20.0% |
| !!! | TCAATAGAAATTTGATTTTC+TGG | - | chr5_4:28483009-28483028 | Msa0847090:CDS | 20.0% |
| !!! | CAATAGAAATTTGATTTTCT+GGG | - | chr5_4:28483010-28483029 | Msa0847090:CDS | 20.0% |
| !! | ATTAGATGATAGAAATTTCA+GGG | + | chr5_4:28483265-28483284 | None:intergenic | 20.0% |
| !! | TATTAGATGATAGAAATTTC+AGG | + | chr5_4:28483266-28483285 | None:intergenic | 20.0% |
| !! | AAATTTCTATCATCTAATAG+AGG | - | chr5_4:28483267-28483286 | Msa0847090:CDS | 20.0% |
| !! | TGGAAATAGTAAAATTTGAT+TGG | + | chr5_4:28483340-28483359 | None:intergenic | 20.0% |
| !!! | TATCCTTTTATTATGAAACT+TGG | + | chr5_4:28483947-28483966 | None:intergenic | 20.0% |
| !! | GTTAGATTCAAATATGTTTA+AGG | - | chr5_4:28485019-28485038 | Msa0847090:intron | 20.0% |
| !! | AAAAAAAGTTCTGTGAAATT+TGG | - | chr5_4:28485517-28485536 | Msa0847090:intron | 20.0% |
| ! | ATCATCAATTCAGTAAGTTA+TGG | - | chr5_4:28482771-28482790 | Msa0847090:three_prime_UTR | 25.0% |
| ! | CAATTCACTATTACTTTCAA+AGG | + | chr5_4:28482887-28482906 | None:intergenic | 25.0% |
| ! | ATCAGTTTACATTACCTTTA+AGG | + | chr5_4:28483210-28483229 | None:intergenic | 25.0% |
| !! | ATGTAAACTGATTCTACTTA+AGG | - | chr5_4:28483218-28483237 | Msa0847090:CDS | 25.0% |
| ! | GATTAATTTCTATACACTGA+CGG | - | chr5_4:28483294-28483313 | Msa0847090:CDS | 25.0% |
| !!! | CATGTGTAAAAAAGTTTTAG+AGG | - | chr5_4:28483418-28483437 | Msa0847090:CDS | 25.0% |
| ! | AAAAAAATACTCACTAACCA+AGG | + | chr5_4:28483742-28483761 | None:intergenic | 25.0% |
| !!! | CATAACTATAGAAGTATTGT+AGG | + | chr5_4:28483857-28483876 | None:intergenic | 25.0% |
| ! | TTGCCAAGTTTCATAATAAA+AGG | - | chr5_4:28483941-28483960 | Msa0847090:CDS | 25.0% |
| !! | GTAAATAATAGGCTTTGATT+GGG | + | chr5_4:28484017-28484036 | None:intergenic | 25.0% |
| !! | TGTAAATAATAGGCTTTGAT+TGG | + | chr5_4:28484018-28484037 | None:intergenic | 25.0% |
| !! | TTCAAATATGTTTAAGGTCA+TGG | - | chr5_4:28485025-28485044 | Msa0847090:intron | 25.0% |
| ! | TGCAAACATTATCATATTTC+AGG | + | chr5_4:28485121-28485140 | None:intergenic | 25.0% |
| !! | GAAATATGATAATGTTTGCA+AGG | - | chr5_4:28485121-28485140 | Msa0847090:intron | 25.0% |
| ! | AGAGATTTCAAAAAGAAGTT+TGG | - | chr5_4:28485292-28485311 | Msa0847090:intron | 25.0% |
| ! | TGTTTGATAATATGCCTCAA+AGG | - | chr5_4:28482824-28482843 | Msa0847090:three_prime_UTR | 30.0% |
| GAAAAAGAAAAGAGTCAGAA+AGG | + | chr5_4:28482859-28482878 | None:intergenic | 30.0% | |
| TAAGTATACTCATCTGAGAA+AGG | + | chr5_4:28483141-28483160 | None:intergenic | 30.0% | |
| !!! | CTATTTCCAGAGTTGTTTTT+AGG | - | chr5_4:28483351-28483370 | Msa0847090:CDS | 30.0% |
| TTGATTCCTAAAAACAACTC+TGG | + | chr5_4:28483360-28483379 | None:intergenic | 30.0% | |
| GCATCATGAGATAATTTGAT+TGG | - | chr5_4:28483392-28483411 | Msa0847090:CDS | 30.0% | |
| !! | CATGGTAAAGTTTGATTTGA+AGG | - | chr5_4:28483552-28483571 | Msa0847090:CDS | 30.0% |
| ! | TTATCAGAGTTCATCAGTTT+TGG | - | chr5_4:28483987-28484006 | Msa0847090:CDS | 30.0% |
| !! | TTATTTTTCCTTGCAGTACT+CGG | - | chr5_4:28484054-28484073 | Msa0847090:CDS | 30.0% |
| TGACTTTCTCATCAATTTCA+AGG | + | chr5_4:28484196-28484215 | None:intergenic | 30.0% | |
| TTGAAATTGATGAGAAAGTC+AGG | - | chr5_4:28484195-28484214 | Msa0847090:CDS | 30.0% | |
| AAAAGAATTGAGAAGGACAT+GGG | - | chr5_4:28484348-28484367 | Msa0847090:CDS | 30.0% | |
| AATAAAATGTCCAAGTCCAT+TGG | + | chr5_4:28484405-28484424 | None:intergenic | 30.0% | |
| ! | GACTTGGACATTTTATTCTA+TGG | - | chr5_4:28484408-28484427 | Msa0847090:CDS | 30.0% |
| AGTACCTCATGAAAGAATTT+GGG | - | chr5_4:28484461-28484480 | Msa0847090:intron | 30.0% | |
| AATGCATCATGGGAAAAATT+AGG | - | chr5_4:28484588-28484607 | Msa0847090:intron | 30.0% | |
| !! | GGTGCTGATATAATTGATAT+CGG | - | chr5_4:28484798-28484817 | Msa0847090:intron | 30.0% |
| TTATAAACGATGTATCTGCT+GGG | - | chr5_4:28484994-28485013 | Msa0847090:intron | 30.0% | |
| GAAAACTGAAGACAATTTAG+AGG | - | chr5_4:28485241-28485260 | Msa0847090:intron | 30.0% | |
| GAAATCTCTTGTCTAATATC+AGG | + | chr5_4:28485281-28485300 | None:intergenic | 30.0% | |
| CCTAAAAATCTCTTTCTTGA+AGG | + | chr5_4:28485347-28485366 | None:intergenic | 30.0% | |
| ! | CCTTCAAGAAAGAGATTTTT+AGG | - | chr5_4:28485344-28485363 | Msa0847090:CDS | 30.0% |
| AATTTGGACAGTTAATTGTC+TGG | - | chr5_4:28485533-28485552 | Msa0847090:intron | 30.0% | |
| ! | CTTTTTCTTCCTTCTTGCAT+AGG | - | chr5_4:28482686-28482705 | Msa0847090:three_prime_UTR | 35.0% |
| !! | TTATGAATCTTGAGTTGGCT+TGG | + | chr5_4:28482747-28482766 | None:intergenic | 35.0% |
| GAGGCATATTATCAAACACA+TGG | + | chr5_4:28482822-28482841 | None:intergenic | 35.0% | |
| ! | CTCTTTTCTCTTGTGACAAA+TGG | - | chr5_4:28483053-28483072 | Msa0847090:CDS | 35.0% |
| ATATCCTAAAACTCTTCAGC+TGG | + | chr5_4:28483095-28483114 | None:intergenic | 35.0% | |
| !!! | GCTGAAGAGTTTTAGGATAT+TGG | - | chr5_4:28483095-28483114 | Msa0847090:CDS | 35.0% |
| TAGGAATCAACCTTAGAAAG+TGG | - | chr5_4:28483370-28483389 | Msa0847090:CDS | 35.0% | |
| AGAGGTAAGACATTGTAAAG+AGG | - | chr5_4:28483436-28483455 | Msa0847090:CDS | 35.0% | |
| TGTAAAGAGGTAAGACATGA+AGG | - | chr5_4:28483449-28483468 | Msa0847090:CDS | 35.0% | |
| GTAAAGAGGTAAGACATGAA+GGG | - | chr5_4:28483450-28483469 | Msa0847090:CDS | 35.0% | |
| TAAAGAGGTAAGACATGAAG+GGG | - | chr5_4:28483451-28483470 | Msa0847090:CDS | 35.0% | |
| AGATTTAGGGATCAAAGTCA+TGG | - | chr5_4:28483534-28483553 | Msa0847090:CDS | 35.0% | |
| ATCGGTAGATGACAATGTTT+GGG | + | chr5_4:28483788-28483807 | None:intergenic | 35.0% | |
| TATCGGTAGATGACAATGTT+TGG | + | chr5_4:28483789-28483808 | None:intergenic | 35.0% | |
| !! | ATTGCTTTGGGAAGTAATGT+TGG | - | chr5_4:28484144-28484163 | Msa0847090:CDS | 35.0% |
| CGATAGACTACAAAACTTCA+AGG | - | chr5_4:28484167-28484186 | Msa0847090:CDS | 35.0% | |
| GTAAGAGCTGTTACTAAACT+CGG | - | chr5_4:28484300-28484319 | Msa0847090:CDS | 35.0% | |
| TAAGAGCTGTTACTAAACTC+GGG | - | chr5_4:28484301-28484320 | Msa0847090:CDS | 35.0% | |
| AGTGCAGACAATAATTCATG+TGG | + | chr5_4:28484327-28484346 | None:intergenic | 35.0% | |
| TGCACTCAAAAGAATTGAGA+AGG | - | chr5_4:28484341-28484360 | Msa0847090:CDS | 35.0% | |
| CAAAAGAATTGAGAAGGACA+TGG | - | chr5_4:28484347-28484366 | Msa0847090:CDS | 35.0% | |
| CAGTACCTCATGAAAGAATT+TGG | - | chr5_4:28484460-28484479 | Msa0847090:intron | 35.0% | |
| TTCCCAGTAAATCCATCAAA+GGG | + | chr5_4:28484506-28484525 | None:intergenic | 35.0% | |
| ATAATGATACAGTTGCTAGC+TGG | - | chr5_4:28484535-28484554 | Msa0847090:intron | 35.0% | |
| TTGCAAATGTCTTGCTTGAT+TGG | - | chr5_4:28484658-28484677 | Msa0847090:intron | 35.0% | |
| CTTATAAACGATGTATCTGC+TGG | - | chr5_4:28484993-28485012 | Msa0847090:intron | 35.0% | |
| TTATGTTGCAATGCACATGA+GGG | - | chr5_4:28485064-28485083 | Msa0847090:intron | 35.0% | |
| TCATCATTCTGCATTGTACA+AGG | + | chr5_4:28485095-28485114 | None:intergenic | 35.0% | |
| ATTATTATGGACCCTGGAAT+TGG | - | chr5_4:28485209-28485228 | Msa0847090:intron | 35.0% | |
| ! | TCTTTGAGAATCCAATTCCA+GGG | + | chr5_4:28485223-28485242 | None:intergenic | 35.0% |
| ! | TTCTTTGAGAATCCAATTCC+AGG | + | chr5_4:28485224-28485243 | None:intergenic | 35.0% |
| TAATATCAGGTATTCCTGTG+AGG | + | chr5_4:28485268-28485287 | None:intergenic | 35.0% | |
| TCTCATGCTCCTATACTAAT+TGG | - | chr5_4:28485320-28485339 | Msa0847090:CDS | 35.0% | |
| CTTGAAGGTCCAATTAGTAT+AGG | + | chr5_4:28485332-28485351 | None:intergenic | 35.0% | |
| TTAAGCTTTGCGATGCAATT+CGG | - | chr5_4:28485492-28485511 | Msa0847090:intron | 35.0% | |
| AGTTAATTGTCTGGCTATGA+TGG | - | chr5_4:28485542-28485561 | Msa0847090:intron | 35.0% | |
| TACCTTCTAGCCTATGTATT+TGG | - | chr5_4:28485601-28485620 | Msa0847090:intron | 35.0% | |
| CGGTGTTCTATATATGACAA+CGG | + | chr5_4:28485676-28485695 | None:intergenic | 35.0% | |
| !! | CATGAAGTACATTGAGTTGA+AGG | - | chr5_4:28485724-28485743 | Msa0847090:intron | 35.0% |
| AAAGGATTCAGAAGCCTTTG+AGG | + | chr5_4:28482841-28482860 | None:intergenic | 40.0% | |
| !! | ATATTGGCTTCGATACACGT+CGG | - | chr5_4:28483111-28483130 | Msa0847090:CDS | 40.0% |
| GCTGCAAGAAACTACCTTAA+AGG | - | chr5_4:28483193-28483212 | Msa0847090:CDS | 40.0% | |
| !! | TCTCATGATGCCACTTTCTA+AGG | + | chr5_4:28483383-28483402 | None:intergenic | 40.0% |
| AGAGATTGACAGTTTCGGAA+TGG | + | chr5_4:28483499-28483518 | None:intergenic | 40.0% | |
| TCCGTGCAAGAATGAGATTT+AGG | - | chr5_4:28483520-28483539 | Msa0847090:CDS | 40.0% | |
| CCCTAAATCTCATTCTTGCA+CGG | + | chr5_4:28483524-28483543 | None:intergenic | 40.0% | |
| CCGTGCAAGAATGAGATTTA+GGG | - | chr5_4:28483521-28483540 | Msa0847090:CDS | 40.0% | |
| !!! | TAGGGCATTGTTTTTAGAGC+TGG | - | chr5_4:28483716-28483735 | Msa0847090:CDS | 40.0% |
| !!! | ATTGTTTTTAGAGCTGGCCT+TGG | - | chr5_4:28483722-28483741 | Msa0847090:CDS | 40.0% |
| TTGTCATCTACCGATACTCA+CGG | - | chr5_4:28483793-28483812 | Msa0847090:CDS | 40.0% | |
| ! | GAGAGAGTGGTTTCTTTTCT+TGG | - | chr5_4:28483827-28483846 | Msa0847090:CDS | 40.0% |
| TCCACAGACGTTACATAAAC+TGG | - | chr5_4:28483909-28483928 | Msa0847090:CDS | 40.0% | |
| ACCAGTTTATGTAACGTCTG+TGG | + | chr5_4:28483913-28483932 | None:intergenic | 40.0% | |
| TGAAGTTCAACAGAGGAGTT+TGG | + | chr5_4:28484102-28484121 | None:intergenic | 40.0% | |
| TGAGGAAGTAGTGATTGCTT+TGG | - | chr5_4:28484131-28484150 | Msa0847090:CDS | 40.0% | |
| GAGGAAGTAGTGATTGCTTT+GGG | - | chr5_4:28484132-28484151 | Msa0847090:CDS | 40.0% | |
| CATACCTTATACCGTCAGTA+CGG | + | chr5_4:28484374-28484393 | None:intergenic | 40.0% | |
| CGTTCCCAAATTCTTTCATG+AGG | + | chr5_4:28484468-28484487 | None:intergenic | 40.0% | |
| TCCCAGTAAATCCATCAAAG+GGG | + | chr5_4:28484505-28484524 | None:intergenic | 40.0% | |
| GTTCCCAGTAAATCCATCAA+AGG | + | chr5_4:28484507-28484526 | None:intergenic | 40.0% | |
| !! | CATTCATTTTCAGGCCATTC+CGG | - | chr5_4:28484558-28484577 | Msa0847090:intron | 40.0% |
| GCATCATGGGAAAAATTAGG+TGG | - | chr5_4:28484591-28484610 | Msa0847090:intron | 40.0% | |
| TTAGGTGGAGAATCCCTTAT+TGG | - | chr5_4:28484606-28484625 | Msa0847090:intron | 40.0% | |
| CATACCTTCCTCTCCAATAA+GGG | + | chr5_4:28484622-28484641 | None:intergenic | 40.0% | |
| ACATACCTTCCTCTCCAATA+AGG | + | chr5_4:28484623-28484642 | None:intergenic | 40.0% | |
| TCAAGCAAGACATTTGCAAC+AGG | + | chr5_4:28484657-28484676 | None:intergenic | 40.0% | |
| ! | GGGGATTCTTAATTTGACTC+CGG | - | chr5_4:28484701-28484720 | Msa0847090:intron | 40.0% |
| !!! | ACTCCGGATAGTTTTAGTGA+TGG | - | chr5_4:28484717-28484736 | Msa0847090:intron | 40.0% |
| !!! | CTCCGGATAGTTTTAGTGAT+GGG | - | chr5_4:28484718-28484737 | Msa0847090:intron | 40.0% |
| !!! | TCCGGATAGTTTTAGTGATG+GGG | - | chr5_4:28484719-28484738 | Msa0847090:intron | 40.0% |
| ATCTCTGTCGAAGAAGAGTT+AGG | - | chr5_4:28484852-28484871 | Msa0847090:intron | 40.0% | |
| ! | GTATTGACATTACAGCTTCC+AGG | + | chr5_4:28484893-28484912 | None:intergenic | 40.0% |
| AGCTGTAATGTCAATACCTG+AGG | - | chr5_4:28484896-28484915 | Msa0847090:intron | 40.0% | |
| GGCAGAAGGAAAACTCATAT+CGG | - | chr5_4:28484917-28484936 | Msa0847090:intron | 40.0% | |
| AGAAGGAAAACTCATATCGG+TGG | - | chr5_4:28484920-28484939 | Msa0847090:intron | 40.0% | |
| CTCATGTGCATTGCAACATA+AGG | + | chr5_4:28485065-28485084 | None:intergenic | 40.0% | |
| CTTATGTTGCAATGCACATG+AGG | - | chr5_4:28485063-28485082 | Msa0847090:intron | 40.0% | |
| TATGTTGCAATGCACATGAG+GGG | - | chr5_4:28485065-28485084 | Msa0847090:intron | 40.0% | |
| TCCATAATAATCCTCCATGC+CGG | + | chr5_4:28485200-28485219 | None:intergenic | 40.0% | |
| ! | TAGTATAGGAGCATGAGAGA+TGG | + | chr5_4:28485318-28485337 | None:intergenic | 40.0% |
| AGCCAAATACATAGGCTAGA+AGG | + | chr5_4:28485606-28485625 | None:intergenic | 40.0% | |
| TTGCGTGAAGCCAAATACAT+AGG | + | chr5_4:28485614-28485633 | None:intergenic | 40.0% | |
| TCCTTCTTGCATAGGTGCTT+TGG | - | chr5_4:28482694-28482713 | Msa0847090:three_prime_UTR | 45.0% | |
| ! | TCCAAAGCACCTATGCAAGA+AGG | + | chr5_4:28482698-28482717 | None:intergenic | 45.0% |
| !! | ATCTTGAGTTGGCTTGGAAG+AGG | + | chr5_4:28482741-28482760 | None:intergenic | 45.0% |
| ! | TGCACCAGCTGAAGAGTTTT+AGG | - | chr5_4:28483088-28483107 | Msa0847090:CDS | 45.0% |
| !! | TATTGGCTTCGATACACGTC+GGG | - | chr5_4:28483112-28483131 | Msa0847090:CDS | 45.0% |
| CGGAGAGAGATTGACAGTTT+CGG | + | chr5_4:28483504-28483523 | None:intergenic | 45.0% | |
| TGTCATCTACCGATACTCAC+GGG | - | chr5_4:28483794-28483813 | Msa0847090:CDS | 45.0% | |
| ATATCTCCACCCGTGAGTAT+CGG | + | chr5_4:28483806-28483825 | None:intergenic | 45.0% | |
| ! | ATGACAATCCGAGTACTGCA+AGG | + | chr5_4:28484065-28484084 | None:intergenic | 45.0% |
| TCGAGTGTGAAGTTCAACAG+AGG | + | chr5_4:28484109-28484128 | None:intergenic | 45.0% | |
| TGAACTTCACACTCGAGATG+AGG | - | chr5_4:28484113-28484132 | Msa0847090:CDS | 45.0% | |
| ! | CGTACTGACGGTATAAGGTA+TGG | - | chr5_4:28484372-28484391 | Msa0847090:CDS | 45.0% |
| ACGGTATAAGGTATGGTCCA+AGG | - | chr5_4:28484379-28484398 | Msa0847090:CDS | 45.0% | |
| ! | TTGGGAACGACCTTTTGTCA+TGG | - | chr5_4:28484479-28484498 | Msa0847090:intron | 45.0% |
| ATCAAAGGGGCCATGACAAA+AGG | + | chr5_4:28484492-28484511 | None:intergenic | 45.0% | |
| ! | TTTTGTCATGGCCCCTTTGA+TGG | - | chr5_4:28484491-28484510 | Msa0847090:intron | 45.0% |
| !! | GCCCCTTTGATGGATTTACT+GGG | - | chr5_4:28484501-28484520 | Msa0847090:intron | 45.0% |
| ! | GCTAGCTGGCATTCATTTTC+AGG | - | chr5_4:28484549-28484568 | Msa0847090:intron | 45.0% |
| ATGCATTTAGTCCACCGGAA+TGG | + | chr5_4:28484575-28484594 | None:intergenic | 45.0% | |
| CCATGATGCATTTAGTCCAC+CGG | + | chr5_4:28484580-28484599 | None:intergenic | 45.0% | |
| !! | CGGTGGACTAAATGCATCAT+GGG | - | chr5_4:28484578-28484597 | Msa0847090:intron | 45.0% |
| TGGAGAATCCCTTATTGGAG+AGG | - | chr5_4:28484611-28484630 | Msa0847090:intron | 45.0% | |
| GAATCCCTTATTGGAGAGGA+AGG | - | chr5_4:28484615-28484634 | Msa0847090:intron | 45.0% | |
| ! | TGATTGGTCGCGAAGAACAT+TGG | - | chr5_4:28484674-28484693 | Msa0847090:intron | 45.0% |
| TCGCGAAGAACATTGGTCAT+GGG | - | chr5_4:28484681-28484700 | Msa0847090:intron | 45.0% | |
| CCCCCATCACTAAAACTATC+CGG | + | chr5_4:28484723-28484742 | None:intergenic | 45.0% | |
| !!! | CCGGATAGTTTTAGTGATGG+GGG | - | chr5_4:28484720-28484739 | Msa0847090:intron | 45.0% |
| AAACAGCAGACTTCACAGAC+TGG | + | chr5_4:28484752-28484771 | None:intergenic | 45.0% | |
| !! | GCTCGGTTGATGATATCAGA+GGG | - | chr5_4:28484777-28484796 | Msa0847090:intron | 45.0% |
| ! | ATATCGGTGCTCAGTCTACT+CGG | - | chr5_4:28484814-28484833 | Msa0847090:intron | 45.0% |
| AGGTAGATTAATCCCTGTCC+TGG | - | chr5_4:28484872-28484891 | Msa0847090:intron | 45.0% | |
| ACATTACAGCTTCCAGGACA+GGG | + | chr5_4:28484887-28484906 | None:intergenic | 45.0% | |
| ATGTCAATACCTGAGGCAGA+AGG | - | chr5_4:28484903-28484922 | Msa0847090:intron | 45.0% | |
| ! | ATGAGTTTTCCTTCTGCCTC+AGG | + | chr5_4:28484915-28484934 | None:intergenic | 45.0% |
| ATCCTCAGAATTATACGCGC+AGG | - | chr5_4:28485148-28485167 | Msa0847090:intron | 45.0% | |
| AACCTGCGCGTATAATTCTG+AGG | + | chr5_4:28485153-28485172 | None:intergenic | 45.0% | |
| ATTATACGCGCAGGTTAGAG+AGG | - | chr5_4:28485157-28485176 | Msa0847090:intron | 45.0% | |
| GGTTAGAGAGGCAGAAATGT+CGG | - | chr5_4:28485169-28485188 | Msa0847090:intron | 45.0% | |
| GTTAGAGAGGCAGAAATGTC+GGG | - | chr5_4:28485170-28485189 | Msa0847090:intron | 45.0% | |
| CCATAATAATCCTCCATGCC+GGG | + | chr5_4:28485199-28485218 | None:intergenic | 45.0% | |
| TGGAGGATTATTATGGACCC+TGG | - | chr5_4:28485203-28485222 | Msa0847090:intron | 45.0% | |
| GACAATTTAGAGGTCCTCAC+AGG | - | chr5_4:28485251-28485270 | Msa0847090:intron | 45.0% | |
| GGCTATGATGGTTTCAGTAC+TGG | - | chr5_4:28485554-28485573 | Msa0847090:intron | 45.0% | |
| ACATAGGCTAGAAGGTAGCT+GGG | + | chr5_4:28485598-28485617 | None:intergenic | 45.0% | |
| TACATAGGCTAGAAGGTAGC+TGG | + | chr5_4:28485599-28485618 | None:intergenic | 45.0% | |
| CTATTGCAGTGTCAGCATTG+CGG | + | chr5_4:28485696-28485715 | None:intergenic | 45.0% | |
| GATACTCACGGGTGGAGATA+TGG | - | chr5_4:28483805-28483824 | Msa0847090:CDS | 50.0% | |
| ! | GGTTGGTCAGTAACATACGC+TGG | + | chr5_4:28484261-28484280 | None:intergenic | 50.0% |
| CAGCTCTTACTGCTGAGTTG+AGG | + | chr5_4:28484290-28484309 | None:intergenic | 50.0% | |
| AAGGTATGGTCCAAGGCCAA+TGG | - | chr5_4:28484386-28484405 | Msa0847090:CDS | 50.0% | |
| ! | ATGTCCAAGTCCATTGGCCT+TGG | + | chr5_4:28484399-28484418 | None:intergenic | 50.0% |
| !! | GGCCCCTTTGATGGATTTAC+TGG | - | chr5_4:28484500-28484519 | Msa0847090:intron | 50.0% |
| !! | TCATTTTCAGGCCATTCCGG+TGG | - | chr5_4:28484561-28484580 | Msa0847090:intron | 50.0% |
| !! | CCGGTGGACTAAATGCATCA+TGG | - | chr5_4:28484577-28484596 | Msa0847090:intron | 50.0% |
| GTCGCGAAGAACATTGGTCA+TGG | - | chr5_4:28484680-28484699 | Msa0847090:intron | 50.0% | |
| CGCGAAGAACATTGGTCATG+GGG | - | chr5_4:28484682-28484701 | Msa0847090:intron | 50.0% | |
| !! | TGTGAAGTCTGCTGTTTCGC+AGG | - | chr5_4:28484755-28484774 | Msa0847090:intron | 50.0% |
| !! | GGCTCGGTTGATGATATCAG+AGG | - | chr5_4:28484776-28484795 | Msa0847090:intron | 50.0% |
| ACAGAGATTCTCGACGCCAT+CGG | + | chr5_4:28484840-28484859 | None:intergenic | 50.0% | |
| GACATTACAGCTTCCAGGAC+AGG | + | chr5_4:28484888-28484907 | None:intergenic | 50.0% | |
| CCCGGCATGGAGGATTATTA+TGG | - | chr5_4:28485196-28485215 | Msa0847090:intron | 50.0% | |
| GATCCCTCTCAACTGCAGAA+GGG | + | chr5_4:28485385-28485404 | None:intergenic | 50.0% | |
| GTAACAGCAGCAATGGTAGC+AGG | + | chr5_4:28485407-28485426 | None:intergenic | 50.0% | |
| ACCATTGCTGCTGTTACTGC+CGG | - | chr5_4:28485410-28485429 | Msa0847090:five_prime_UTR | 50.0% | |
| CATCTACCGATACTCACGGG+TGG | - | chr5_4:28483797-28483816 | Msa0847090:CDS | 55.0% | |
| GGGTGGAGATATGGAGAGAG+TGG | - | chr5_4:28483814-28483833 | Msa0847090:CDS | 55.0% | |
| ! | CTGAGTTGAGGAAGCGAGGT+TGG | + | chr5_4:28484278-28484297 | None:intergenic | 55.0% |
| ! | ACTGCTGAGTTGAGGAAGCG+AGG | + | chr5_4:28484282-28484301 | None:intergenic | 55.0% |
| AAGGACATGGGCCGTACTGA+CGG | - | chr5_4:28484360-28484379 | Msa0847090:CDS | 55.0% | |
| ! | TGGGCCGTACTGACGGTATA+AGG | - | chr5_4:28484367-28484386 | Msa0847090:CDS | 55.0% |
| ! | TGGTCCAAGGCCAATGGACT+TGG | - | chr5_4:28484392-28484411 | Msa0847090:CDS | 55.0% |
| !! | AGTCTGCTGTTTCGCAGGCT+CGG | - | chr5_4:28484760-28484779 | Msa0847090:intron | 55.0% |
| CATCAGAAGCAGTGCGCAGA+GGG | - | chr5_4:28484964-28484983 | Msa0847090:intron | 55.0% | |
| ATCAGAAGCAGTGCGCAGAG+GGG | - | chr5_4:28484965-28484984 | Msa0847090:intron | 55.0% | |
| GGCAGAAATGTCGGGAATCC+CGG | - | chr5_4:28485178-28485197 | Msa0847090:intron | 55.0% | |
| AAATGTCGGGAATCCCGGCA+TGG | - | chr5_4:28485183-28485202 | Msa0847090:intron | 55.0% | |
| TCGCCCTTCTGCAGTTGAGA+GGG | - | chr5_4:28485379-28485398 | Msa0847090:five_prime_UTR | 55.0% | |
| GGATCCCTCTCAACTGCAGA+AGG | + | chr5_4:28485386-28485405 | None:intergenic | 55.0% | |
| ACCGGCAGTAACAGCAGCAA+TGG | + | chr5_4:28485414-28485433 | None:intergenic | 55.0% | |
| TGCTGTTACTGCCGGTGTGT+TGG | - | chr5_4:28485418-28485437 | Msa0847090:five_prime_UTR | 55.0% | |
| GCTGTTACTGCCGGTGTGTT+GGG | - | chr5_4:28485419-28485438 | Msa0847090:five_prime_UTR | 55.0% | |
| TTACTGCCGGTGTGTTGGGT+GGG | - | chr5_4:28485423-28485442 | Msa0847090:intron | 55.0% | |
| ATTAGCCCCACCCAACACAC+CGG | + | chr5_4:28485432-28485451 | None:intergenic | 55.0% | |
| TTAAGTACCTGAGCGCGCGC+AGG | - | chr5_4:28483158-28483177 | Msa0847090:CDS | 60.0% | |
| TGCTCAGTCTACTCGGCCGA+TGG | - | chr5_4:28484821-28484840 | Msa0847090:intron | 60.0% | |
| GCATCAGAAGCAGTGCGCAG+AGG | - | chr5_4:28484963-28484982 | Msa0847090:intron | 60.0% | |
| CTCGCCCTTCTGCAGTTGAG+AGG | - | chr5_4:28485378-28485397 | Msa0847090:five_prime_UTR | 60.0% | |
| GTTACTGCCGGTGTGTTGGG+TGG | - | chr5_4:28485422-28485441 | Msa0847090:intron | 60.0% | |
| TACTGCCGGTGTGTTGGGTG+GGG | - | chr5_4:28485424-28485443 | Msa0847090:intron | 60.0% | |
| TGTCGGGAATCCCGGCATGG+AGG | - | chr5_4:28485186-28485205 | Msa0847090:intron | 65.0% | |
| ! | GCTGACTCCTGCGCGCGCTC+AGG | + | chr5_4:28483168-28483187 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 28482684 | 28485841 | 28482684 | ID=Msa0847090;Name=Msa0847090 |
| chr5_4 | mRNA | 28482684 | 28485841 | 28482684 | ID=Msa0847090-mRNA-1;Parent=Msa0847090;Name=Msa0847090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=161|1|1|1|0.5|0.33|3|309|509 |
| chr5_4 | exon | 28482684 | 28484455 | 28482684 | ID=Msa0847090-mRNA-1:exon:10738;Parent=Msa0847090-mRNA-1 |
| chr5_4 | exon | 28485311 | 28485439 | 28485311 | ID=Msa0847090-mRNA-1:exon:10737;Parent=Msa0847090-mRNA-1 |
| chr5_4 | exon | 28485743 | 28485841 | 28485743 | ID=Msa0847090-mRNA-1:exon:10736;Parent=Msa0847090-mRNA-1 |
| chr5_4 | five_prime_UTR | 28485743 | 28485841 | 28485743 | ID=Msa0847090-mRNA-1:five_prime_utr;Parent=Msa0847090-mRNA-1 |
| chr5_4 | five_prime_UTR | 28485378 | 28485439 | 28485378 | ID=Msa0847090-mRNA-1:five_prime_utr;Parent=Msa0847090-mRNA-1 |
| chr5_4 | CDS | 28485311 | 28485377 | 28485311 | ID=Msa0847090-mRNA-1:cds;Parent=Msa0847090-mRNA-1 |
| chr5_4 | CDS | 28482993 | 28484455 | 28482993 | ID=Msa0847090-mRNA-1:cds;Parent=Msa0847090-mRNA-1 |
| chr5_4 | three_prime_UTR | 28482684 | 28482992 | 28482684 | ID=Msa0847090-mRNA-1:three_prime_utr;Parent=Msa0847090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
