AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0162170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162170 MtrunA17_Chr1g0176251 88.010 392 5 1 1 350 1 392 0.0 646
Msa0162170 MtrunA17_Chr4g0072191 27.525 396 212 12 20 350 25 410 4.03e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162170 AT3G11945.1 60.406 394 104 4 1 350 1 386 1.21e-153 437
Msa0162170 AT3G11945.2 58.438 397 114 5 1 350 1 393 6.03e-147 421
Msa0162170 AT2G18950.1 30.820 305 155 9 95 350 95 392 3.19e-30 119
Msa0162170 AT2G18950.2 30.131 229 106 8 95 274 95 318 1.83e-17 82.4

Find 98 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACCGTTTGGAAGATTT+TGG 0.090645 1_4:+38560379 None:intergenic
TCGAGCAACTGCTGCATTTC+TGG 0.140439 1_4:+38554914 None:intergenic
TCCACCATTTAAACTCATTT+TGG 0.169004 1_4:+38554671 None:intergenic
TCGACCTTTGCTACAAAATT+AGG 0.197774 1_4:-38557094 Msa0162170:CDS
TTAACCAAAATGAGTTTAAA+TGG 0.215058 1_4:-38554675 Msa0162170:three_prime_UTR
GGTGTTGTTGACAGGCTTTC+AGG 0.223817 1_4:-38556910 Msa0162170:intron
AACATTTCTTTCCTTGGTTC+TGG 0.229462 1_4:-38557064 Msa0162170:CDS
GGAATTCCATGTGGGAATTA+TGG 0.238319 1_4:+38560450 None:intergenic
TCCATTTGCTGACAAAGTTT+TGG 0.267704 1_4:-38558880 Msa0162170:CDS
TCCAAACGGTTTGGTTCAAT+TGG 0.282213 1_4:-38560370 Msa0162170:CDS
CATATAAATTGCTGCCAATA+TGG 0.320084 1_4:+38557015 None:intergenic
GTCTTATTGATCGGCTGCTT+TGG 0.333194 1_4:+38554891 None:intergenic
AGTGTTGCTTCAGCTCCTTA+TGG 0.337423 1_4:-38560512 Msa0162170:exon
AATAGATAGTACCAAGAAAA+AGG 0.341669 1_4:+38557892 None:intergenic
TTGTAGCAAAGGTCGATATC+TGG 0.356640 1_4:+38557101 None:intergenic
ACAACATACCCTGATGGAAA+TGG 0.357216 1_4:+38560282 None:intergenic
ATGCATTCTGGAGATTTCTA+AGG 0.365700 1_4:-38558848 Msa0162170:CDS
CCAAAATCTTCCAAACGGTT+TGG 0.385159 1_4:-38560379 Msa0162170:CDS
GTTCGGAACATTTCTTTCCT+TGG 0.385731 1_4:-38557070 Msa0162170:CDS
ACCGCAAGTTAAGGGCCGTT+TGG 0.390200 1_4:-38554579 Msa0162170:three_prime_UTR
CACTATCGTTTACAGTGCTT+TGG 0.392912 1_4:-38558709 Msa0162170:intron
CCCAATTGAACCAAACCGTT+TGG 0.399938 1_4:+38560369 None:intergenic
TGCAGTGAAGTTGGAGCGGC+TGG 0.400366 1_4:-38558912 Msa0162170:CDS
ACTATCCGTGGTACAGCATT+AGG 0.405007 1_4:-38558819 Msa0162170:CDS
GAACTATGTTGTTACCATAT+TGG 0.406125 1_4:-38557029 Msa0162170:CDS
ATGTTGCAGGAAGCAATATC+AGG 0.410158 1_4:-38555042 Msa0162170:intron
CAGTTTAGACCGCAAGTTAA+GGG 0.414169 1_4:-38554587 Msa0162170:three_prime_UTR
ATAATAAGAAATGCTGCAAC+AGG 0.417997 1_4:+38557840 None:intergenic
TCCAAAACTTTGTCAGCAAA+TGG 0.423759 1_4:+38558879 None:intergenic
TTGCTACAAAATTAGGAGTT+CGG 0.428806 1_4:-38557087 Msa0162170:CDS
CTACGATCTCCTTCAACATC+TGG 0.429352 1_4:+38557335 None:intergenic
CAGGATTCTATCGATTCATA+TGG 0.434066 1_4:-38555023 Msa0162170:CDS
GAGCTGAAGCAACACTCAAC+TGG 0.434312 1_4:+38560519 None:intergenic
AAATATTAATATTTATTGAC+CGG 0.437034 1_4:+38554843 None:intergenic
CAACATACCCTGATGGAAAT+GGG 0.440583 1_4:+38560283 None:intergenic
TTTGCTCTGATTTGTGGGAA+TGG 0.449050 1_4:-38558615 Msa0162170:intron
ACAGTTTAGACCGCAAGTTA+AGG 0.450058 1_4:-38554588 Msa0162170:three_prime_UTR
AGTTCAATCCTACAGTCAAT+AGG 0.458249 1_4:+38557949 None:intergenic
TCCGGATTTGTCTTATTGAT+CGG 0.466092 1_4:+38554882 None:intergenic
ATCTCCATCATCCATTAGAA+AGG 0.467810 1_4:-38554716 Msa0162170:three_prime_UTR
GTTGACAGGCTTTCAGGAGA+TGG 0.469985 1_4:-38556904 Msa0162170:intron
CCAAACGGTTTGGTTCAATT+GGG 0.472071 1_4:-38560369 Msa0162170:CDS
AGCCGCTCCAACTTCACTGC+AGG 0.473130 1_4:+38558914 None:intergenic
AGTGTAAACCCATTTCCATC+AGG 0.473401 1_4:-38560291 Msa0162170:CDS
GGTTGTGGATTTAGCTGAAG+TGG 0.474821 1_4:+38560402 None:intergenic
AAAGATCTTCCAGATGTTGA+AGG 0.481104 1_4:-38557344 Msa0162170:CDS
AGCATTTCTTATTATTGCTA+CGG 0.484068 1_4:-38557832 Msa0162170:intron
TCTATTCCGTTCCTCCGCTT+AGG 0.484634 1_4:-38557875 Msa0162170:CDS
GGCTTTAAAGCACTAGGATC+CGG 0.491373 1_4:+38554864 None:intergenic
TTGACTGTAGGATTGAACTT+TGG 0.493059 1_4:-38557945 Msa0162170:CDS
TGCTTCAAGCTTGATTTACC+AGG 0.498689 1_4:-38556855 Msa0162170:intron
AGAACTCAAATCTGATAAAG+TGG 0.498811 1_4:-38558668 Msa0162170:CDS
GGTGGAGATCATGAAATATG+AGG 0.512937 1_4:-38554654 Msa0162170:three_prime_UTR
GTTGTGGATTTAGCTGAAGT+GGG 0.513391 1_4:+38560403 None:intergenic
GCCGATCAATAAGACAAATC+CGG 0.518529 1_4:-38554883 Msa0162170:three_prime_UTR
TCTCCATCATCCATTAGAAA+GGG 0.521529 1_4:-38554715 Msa0162170:three_prime_UTR
ATGGATGATGGAGATTTCAA+TGG 0.522117 1_4:+38554724 None:intergenic
TGAAGGTGTTCTTGCTGATG+TGG 0.522835 1_4:+38560567 None:intergenic
GGCAGCAATTTATATGCCAC+AGG 0.528952 1_4:-38557008 Msa0162170:intron
AAGAAGTAGAGAGCTCCATA+AGG 0.529817 1_4:+38560497 None:intergenic
ACTGCTGCATTTCTGGATGC+AGG 0.532740 1_4:+38554921 None:intergenic
GAAGGTGTTCTTGCTGATGT+GGG 0.543264 1_4:+38560568 None:intergenic
CAACCCCAAAATCTTCCAAA+CGG 0.546702 1_4:-38560384 Msa0162170:CDS
TACGCCACTAGAGCTGCTCT+TGG 0.549187 1_4:-38557664 Msa0162170:CDS
TTTCATCCTAAGCGGAGGAA+CGG 0.550726 1_4:+38557869 None:intergenic
AAGTCCAAGAGCAGCTCTAG+TGG 0.553924 1_4:+38557660 None:intergenic
GACACACAAACGTTTGATGA+AGG 0.556344 1_4:+38560550 None:intergenic
GTCTAAACTGTATGCTAGCA+AGG 0.560297 1_4:+38554600 None:intergenic
ACCAAAATGAGTTTAAATGG+TGG 0.568556 1_4:-38554672 Msa0162170:three_prime_UTR
TCCAAACGGCCCTTAACTTG+CGG 0.580637 1_4:+38554578 None:intergenic
TTGCAGGCCTGCAGTGAAGT+TGG 0.583928 1_4:-38558921 Msa0162170:intron
GAAGCAAATATTGCATGAGC+TGG 0.584720 1_4:+38556872 None:intergenic
GCCGTTGTATACAATTCTCA+TGG 0.585431 1_4:+38554758 None:intergenic
AGCACAGTTTGCTAGATGAA+AGG 0.587771 1_4:+38554970 None:intergenic
ATCCGCCTGCAGCTCTCCTG+TGG 0.591315 1_4:-38557417 Msa0162170:intron
CACATTCCATAATTCCCACA+TGG 0.597325 1_4:-38560456 Msa0162170:CDS
GTGGATTTAGCTGAAGTGGG+TGG 0.600338 1_4:+38560406 None:intergenic
AGAAACTTGTGTGATGATGA+TGG 0.601149 1_4:+38560341 None:intergenic
TGTATACAACGGCCACATGA+AGG 0.602584 1_4:-38554748 Msa0162170:three_prime_UTR
GATTTCAATGGACCTTCATG+TGG 0.603080 1_4:+38554736 None:intergenic
GGATCCTAGTGCTTTAAAGC+CGG 0.604590 1_4:-38554862 Msa0162170:three_prime_UTR
GCTGTACCACGGATAGTATG+TGG 0.609127 1_4:+38558825 None:intergenic
GCAGCTGGCCTATTGACTGT+AGG 0.609137 1_4:-38557957 Msa0162170:CDS
TCCATCATCCATTAGAAAGG+GGG 0.625829 1_4:-38554713 Msa0162170:three_prime_UTR
GTGTAAACCCATTTCCATCA+GGG 0.626735 1_4:-38560290 Msa0162170:intron
GGCCTGCAGTGAAGTTGGAG+CGG 0.629598 1_4:-38558916 Msa0162170:CDS
AAGGTGTTCTTGCTGATGTG+GGG 0.629637 1_4:+38560569 None:intergenic
CTCCATCATCCATTAGAAAG+GGG 0.630996 1_4:-38554714 Msa0162170:three_prime_UTR
TCAGCAAAATTCCAGAACCA+AGG 0.633793 1_4:+38557053 None:intergenic
TTGACCGGCTTTAAAGCACT+AGG 0.634146 1_4:+38554858 None:intergenic
CCATCATCCATTAGAAAGGG+GGG 0.640761 1_4:-38554712 Msa0162170:three_prime_UTR
CTAAGGCCACATACTATCCG+TGG 0.660364 1_4:-38558831 Msa0162170:CDS
AAGCGTTTCATCCTAAGCGG+AGG 0.662812 1_4:+38557864 None:intergenic
CAGATGTTGAAGGAGATCGT+AGG 0.666387 1_4:-38557334 Msa0162170:intron
GCCATGAGAATTGTATACAA+CGG 0.669269 1_4:-38554759 Msa0162170:three_prime_UTR
AAGAGACTTATGCAGGTACG+CGG 0.681026 1_4:-38557712 Msa0162170:intron
GGAAAGCGTTTCATCCTAAG+CGG 0.694499 1_4:+38557861 None:intergenic
AAGAACCTAATGCTGTACCA+CGG 0.731271 1_4:+38558814 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTATATCATTGAA+GGG + chr1_4:38559197-38559216 None:intergenic 10.0%
!!! ATTTTTTATTATATCATTGA+AGG + chr1_4:38559198-38559217 None:intergenic 10.0%
!! AAATATTAATATTTATTGAC+CGG + chr1_4:38560272-38560291 None:intergenic 10.0%
!!! TGATTTTATTTGGAAAAATT+TGG - chr1_4:38554899-38554918 Msa0162170:three_prime_UTR 15.0%
!! ATTAAAACCTACTTATATAA+CGG - chr1_4:38555552-38555571 Msa0162170:intron 15.0%
!! AGAAGAAAAATATTGAAAAT+TGG + chr1_4:38556667-38556686 None:intergenic 15.0%
!! TGAAATATAAGAATAACTTA+GGG + chr1_4:38557049-38557068 None:intergenic 15.0%
!! ATGAAATATAAGAATAACTT+AGG + chr1_4:38557050-38557069 None:intergenic 15.0%
!!! TATTCTTATATTTCATTTTC+AGG - chr1_4:38557054-38557073 Msa0162170:CDS 15.0%
!!! ATTCTTATATTTCATTTTCA+GGG - chr1_4:38557055-38557074 Msa0162170:CDS 15.0%
!! TCTGTTATAAAATATTTGTT+CGG - chr1_4:38558365-38558384 Msa0162170:intron 15.0%
!!! GATTTATTTTCTTATATTTC+AGG - chr1_4:38558574-38558593 Msa0162170:intron 15.0%
!!! TTTTTATTATATCATTGAAG+GGG + chr1_4:38559196-38559215 None:intergenic 15.0%
!! ATTAATTAGAAGTAAAACTT+GGG + chr1_4:38559688-38559707 None:intergenic 15.0%
!! AATTAATTAGAAGTAAAACT+TGG + chr1_4:38559689-38559708 None:intergenic 15.0%
!!! TTTTCATAAACTCAAAAATA+AGG + chr1_4:38560563-38560582 None:intergenic 15.0%
!!! TTTTATTTGGAAAAATTTGG+TGG - chr1_4:38554902-38554921 Msa0162170:three_prime_UTR 20.0%
!! TTTATTTGGAAAAATTTGGT+GGG - chr1_4:38554903-38554922 Msa0162170:three_prime_UTR 20.0%
!! TTTAATTACTTTGATCTTTC+AGG - chr1_4:38555202-38555221 Msa0162170:intron 20.0%
!! TTTAAAAACAACTAATGTAC+TGG + chr1_4:38555307-38555326 None:intergenic 20.0%
!!! ATTTGTCTATTTGTCTTTTT+AGG + chr1_4:38555883-38555902 None:intergenic 20.0%
!!! TAATCACTAAATATTTTCTG+TGG - chr1_4:38555961-38555980 Msa0162170:intron 20.0%
!! ATCAATCAAATATATGACAT+TGG - chr1_4:38556533-38556552 Msa0162170:intron 20.0%
!! TGAAAAATTGAACTAAAATG+AGG + chr1_4:38556754-38556773 None:intergenic 20.0%
!! GAGTAAAGAGAAAAAATAAA+AGG + chr1_4:38557194-38557213 None:intergenic 20.0%
!!! TAAGGTTTATTTTCAAATGT+AGG + chr1_4:38558172-38558191 None:intergenic 20.0%
!! ATAACAGAAAATGATTAAGA+TGG + chr1_4:38558353-38558372 None:intergenic 20.0%
!! TGAAACTTCTTAGTATAATT+AGG - chr1_4:38558420-38558439 Msa0162170:intron 20.0%
!! AGAAAAAGCAAATTATACAA+AGG - chr1_4:38558607-38558626 Msa0162170:intron 20.0%
!!! ATATGTTATCATCTTTTGTT+TGG - chr1_4:38558633-38558652 Msa0162170:CDS 20.0%
!! TCTCATAAACTAAAACAAAT+AGG - chr1_4:38558969-38558988 Msa0162170:intron 20.0%
!!! TTTTATTATATCATTGAAGG+GGG + chr1_4:38559195-38559214 None:intergenic 20.0%
!! TGAGTGATAAAAATAATCAT+TGG + chr1_4:38559612-38559631 None:intergenic 20.0%
!! ACATTTAATCAAGCAATATT+GGG + chr1_4:38560038-38560057 None:intergenic 20.0%
!! TTAACCAAAATGAGTTTAAA+TGG - chr1_4:38560437-38560456 Msa0162170:CDS 20.0%
!! TTTGAAAGAGTAGTAGTTTT+TGG + chr1_4:38554686-38554705 None:intergenic 25.0%
!!! TGTTAGCTTGTGATTTTATT+TGG - chr1_4:38554889-38554908 Msa0162170:three_prime_UTR 25.0%
! ATAACTACTTCACTTATGAT+TGG + chr1_4:38555075-38555094 None:intergenic 25.0%
! CAATTGAAATGTAATGGTAA+TGG - chr1_4:38555600-38555619 Msa0162170:intron 25.0%
!!! AACGAAATTTTTTATCGAAG+TGG - chr1_4:38555800-38555819 Msa0162170:intron 25.0%
!!! TCAATGCTCAGATTTTTTAT+GGG + chr1_4:38556023-38556042 None:intergenic 25.0%
!!! TTCAATGCTCAGATTTTTTA+TGG + chr1_4:38556024-38556043 None:intergenic 25.0%
! AACAAAATTGAAGTAACCAA+CGG + chr1_4:38556085-38556104 None:intergenic 25.0%
! TTGAATCAAAACCAAAAGTA+GGG + chr1_4:38556144-38556163 None:intergenic 25.0%
! ATTGAATCAAAACCAAAAGT+AGG + chr1_4:38556145-38556164 None:intergenic 25.0%
!! TTTTAAATTGAAATGCTTGC+AGG - chr1_4:38556175-38556194 Msa0162170:intron 25.0%
! CTGTACAATAGTTTCAATTT+AGG - chr1_4:38556700-38556719 Msa0162170:intron 25.0%
! AGTGCTATCATAATGTATTT+GGG + chr1_4:38556777-38556796 None:intergenic 25.0%
! TAGTGCTATCATAATGTATT+TGG + chr1_4:38556778-38556797 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG - chr1_4:38557023-38557042 Msa0162170:CDS 25.0%
!!! ATTTTTTCTCTTTACTCCTT+CGG - chr1_4:38557197-38557216 Msa0162170:intron 25.0%
! AATAGATAGTACCAAGAAAA+AGG + chr1_4:38557223-38557242 None:intergenic 25.0%
! AGCATTTCTTATTATTGCTA+CGG - chr1_4:38557280-38557299 Msa0162170:intron 25.0%
!! ACAGTTAGTAAAGTATCATT+TGG - chr1_4:38557360-38557379 Msa0162170:CDS 25.0%
!!! GTTGTTTCATATTTTGCAAT+TGG - chr1_4:38557509-38557528 Msa0162170:intron 25.0%
! AATAAACCTTATGTAAGTTG+TGG - chr1_4:38558181-38558200 Msa0162170:intron 25.0%
! TCATCATATCACATTCAATA+TGG + chr1_4:38558318-38558337 None:intergenic 25.0%
! TAAAATATTTGTTCGGAGAA+TGG - chr1_4:38558372-38558391 Msa0162170:intron 25.0%
!! CAACTTATTAATGTGCATTT+TGG + chr1_4:38558535-38558554 None:intergenic 25.0%
!! TGTTTTCAAAACTCAAAAGT+TGG - chr1_4:38558680-38558699 Msa0162170:CDS 25.0%
! TGATCTATATCATATGTAGT+CGG + chr1_4:38558740-38558759 None:intergenic 25.0%
! TAAAACAAACGGAAGAAAAA+TGG + chr1_4:38558882-38558901 None:intergenic 25.0%
! GAAGTTGTACTTAATTCTAT+TGG - chr1_4:38558931-38558950 Msa0162170:intron 25.0%
! TTGTGGAAGAAAAAAAAACA+GGG + chr1_4:38559101-38559120 None:intergenic 25.0%
! TTTATTATATCATTGAAGGG+GGG + chr1_4:38559194-38559213 None:intergenic 25.0%
! TAAAAGAGAGCTTATGAAAA+CGG + chr1_4:38559925-38559944 None:intergenic 25.0%
! GACATTTAATCAAGCAATAT+TGG + chr1_4:38560039-38560058 None:intergenic 25.0%
! CAAAAATAAGGTAATCCAAA+CGG + chr1_4:38560551-38560570 None:intergenic 25.0%
!!! TAGTTTTTGGAATTCCATGT+GGG + chr1_4:38554673-38554692 None:intergenic 30.0%
AGTTCATGGAAAATTCAGAA+TGG - chr1_4:38554937-38554956 Msa0162170:three_prime_UTR 30.0%
AAAATTCAGAATGGTTGAGA+AGG - chr1_4:38554946-38554965 Msa0162170:three_prime_UTR 30.0%
AATGGTTGAGAAGGAATAAT+GGG - chr1_4:38554955-38554974 Msa0162170:three_prime_UTR 30.0%
TTTGATCTTTCAGGCAAATT+TGG - chr1_4:38555211-38555230 Msa0162170:intron 30.0%
ACTGATACCCGATATAAATA+CGG + chr1_4:38555346-38555365 None:intergenic 30.0%
! ATGCAACATAGACAGATTTT+AGG - chr1_4:38555381-38555400 Msa0162170:intron 30.0%
TTTGCTTCCGTTATATAAGT+AGG + chr1_4:38555562-38555581 None:intergenic 30.0%
!! GTAATGGTAATGGTTTCAAA+TGG - chr1_4:38555610-38555629 Msa0162170:intron 30.0%
!!! GATTTTTTATGGGTATCATG+TGG + chr1_4:38556013-38556032 None:intergenic 30.0%
!! AACACTTTTTACCCTACTTT+TGG - chr1_4:38556130-38556149 Msa0162170:intron 30.0%
!! TGGATTTTAAAGATGCATTC+TGG - chr1_4:38556252-38556271 Msa0162170:intron 30.0%
AGAACTCAAATCTGATAAAG+TGG - chr1_4:38556444-38556463 Msa0162170:intron 30.0%
! ATGATAGCACTATTAGTCTA+AGG - chr1_4:38556786-38556805 Msa0162170:intron 30.0%
! TATTAGTCTAAGGATCTGTT+TGG - chr1_4:38556796-38556815 Msa0162170:intron 30.0%
!! CTTATTTCTATAAGCTCTTC+AGG + chr1_4:38556918-38556937 None:intergenic 30.0%
AATAAGCTGAAAACAGCTAA+TGG - chr1_4:38556932-38556951 Msa0162170:intron 30.0%
ATAAGCTGAAAACAGCTAAT+GGG - chr1_4:38556933-38556952 Msa0162170:intron 30.0%
ATAATAAGAAATGCTGCAAC+AGG + chr1_4:38557275-38557294 None:intergenic 30.0%
AGTGTCTATTGTTTGATTAG+AGG - chr1_4:38557558-38557577 Msa0162170:intron 30.0%
AAAGTTGTGATAAAAACCAC+AGG + chr1_4:38557714-38557733 None:intergenic 30.0%
! TTTCGTAACATTTTTCGCAT+TGG - chr1_4:38557731-38557750 Msa0162170:intron 30.0%
! TTTAGAATCATGTTGCGTTA+AGG - chr1_4:38557806-38557825 Msa0162170:intron 30.0%
TTAGAATCATGTTGCGTTAA+GGG - chr1_4:38557807-38557826 Msa0162170:intron 30.0%
TACACCAACAAATAAAAGAG+TGG + chr1_4:38557947-38557966 None:intergenic 30.0%
GGTGTATCATGTATGTAATA+TGG - chr1_4:38557961-38557980 Msa0162170:intron 30.0%
TGCATGTAATAATTAACTGC+AGG - chr1_4:38557986-38558005 Msa0162170:intron 30.0%
! AACTCCTAATTTTGTAGCAA+AGG + chr1_4:38558025-38558044 None:intergenic 30.0%
TTGCTACAAAATTAGGAGTT+CGG - chr1_4:38558025-38558044 Msa0162170:intron 30.0%
GAACTATGTTGTTACCATAT+TGG - chr1_4:38558083-38558102 Msa0162170:intron 30.0%
CATATAAATTGCTGCCAATA+TGG + chr1_4:38558100-38558119 None:intergenic 30.0%
!! ATTTTGGAAAAATACAGACG+GGG + chr1_4:38558519-38558538 None:intergenic 30.0%
!! CATTTTGGAAAAATACAGAC+GGG + chr1_4:38558520-38558539 None:intergenic 30.0%
!! GCATTTTGGAAAAATACAGA+CGG + chr1_4:38558521-38558540 None:intergenic 30.0%
CTTACAAGAATCGAAAATCA+AGG + chr1_4:38558707-38558726 None:intergenic 30.0%
GATCTATATCATATGTAGTC+GGG + chr1_4:38558739-38558758 None:intergenic 30.0%
! TTCTGGTAGTTACATCTTTT+AGG - chr1_4:38558785-38558804 Msa0162170:intron 30.0%
! TCTGGTAGTTACATCTTTTA+GGG - chr1_4:38558786-38558805 Msa0162170:intron 30.0%
AGAGAGAAAATTTAGTCAGA+AGG - chr1_4:38558828-38558847 Msa0162170:CDS 30.0%
! TCACCAGAATCTAAAACAAA+CGG + chr1_4:38558893-38558912 None:intergenic 30.0%
!! GTGAATGCACTTTTTACTAA+AGG - chr1_4:38558909-38558928 Msa0162170:CDS 30.0%
AATTGCCTACATCAATGATA+AGG - chr1_4:38558993-38559012 Msa0162170:intron 30.0%
ATTGCCTACATCAATGATAA+GGG - chr1_4:38558994-38559013 Msa0162170:intron 30.0%
GAAGAAAAAAAAACAGGGTA+AGG + chr1_4:38559096-38559115 None:intergenic 30.0%
CTTGTGGAAGAAAAAAAAAC+AGG + chr1_4:38559102-38559121 None:intergenic 30.0%
!!! GTTTTTTTTTCTTCCACAAG+AGG - chr1_4:38559102-38559121 Msa0162170:intron 30.0%
! CACAAAACAGTGTTGTTAAA+TGG - chr1_4:38559306-38559325 Msa0162170:intron 30.0%
! AAAACAGTGTTGTTAAATGG+CGG - chr1_4:38559309-38559328 Msa0162170:intron 30.0%
! TATGTAAGTGTTGTAGATAG+CGG + chr1_4:38559461-38559480 None:intergenic 30.0%
! AACTGTGCTACATTTTTACT+AGG - chr1_4:38560156-38560175 Msa0162170:intron 30.0%
ACCAAAATGAGTTTAAATGG+TGG - chr1_4:38560440-38560459 Msa0162170:CDS 30.0%
! TCCACCATTTAAACTCATTT+TGG + chr1_4:38560444-38560463 None:intergenic 30.0%
!!! GTAGTTTTTGGAATTCCATG+TGG + chr1_4:38554674-38554693 None:intergenic 35.0%
! AAACCGTTTGGAAGATTTTG+GGG + chr1_4:38554734-38554753 None:intergenic 35.0%
! CAAACCGTTTGGAAGATTTT+GGG + chr1_4:38554735-38554754 None:intergenic 35.0%
! AGAAACTTGTGTGATGATGA+TGG + chr1_4:38554774-38554793 None:intergenic 35.0%
ACAAAAACAACATACCCTGA+TGG + chr1_4:38554839-38554858 None:intergenic 35.0%
!! GGGTTTTGATAAGTAGTTCA+TGG - chr1_4:38554923-38554942 Msa0162170:three_prime_UTR 35.0%
GAATGGTTGAGAAGGAATAA+TGG - chr1_4:38554954-38554973 Msa0162170:three_prime_UTR 35.0%
ATGGTTGAGAAGGAATAATG+GGG - chr1_4:38554956-38554975 Msa0162170:three_prime_UTR 35.0%
CTGATACCCGATATAAATAC+GGG + chr1_4:38555345-38555364 None:intergenic 35.0%
TTTATATCGGGTATCAGTAC+CGG - chr1_4:38555348-38555367 Msa0162170:intron 35.0%
TAGAATTGAAGCTTGAACTC+TGG - chr1_4:38555442-38555461 Msa0162170:intron 35.0%
GGTCGTCAATTGAAATGTAA+TGG - chr1_4:38555594-38555613 Msa0162170:intron 35.0%
! ATCTCAATTTTCCTTGCCAA+TGG + chr1_4:38555778-38555797 None:intergenic 35.0%
ACTAATAGCGATCATTAGCA+AGG - chr1_4:38555833-38555852 Msa0162170:intron 35.0%
TCATCGAATTTATTGACGCT+AGG - chr1_4:38556106-38556125 Msa0162170:intron 35.0%
!! TCCATTTGCTGACAAAGTTT+TGG - chr1_4:38556232-38556251 Msa0162170:intron 35.0%
TCCAAAACTTTGTCAGCAAA+TGG + chr1_4:38556236-38556255 None:intergenic 35.0%
! ATGCATTCTGGAGATTTCTA+AGG - chr1_4:38556264-38556283 Msa0162170:intron 35.0%
!!! CTTTTGTTGAAAGCATTCTC+TGG - chr1_4:38556470-38556489 Msa0162170:intron 35.0%
!! GTCTTTTTGCTCTGATTTGT+GGG - chr1_4:38556492-38556511 Msa0162170:intron 35.0%
TGTGGGAATGGTTATATAGT+TGG - chr1_4:38556509-38556528 Msa0162170:CDS 35.0%
TTGGCAAGAAATGTGCAAAA+GGG + chr1_4:38556648-38556667 None:intergenic 35.0%
ATTGGCAAGAAATGTGCAAA+AGG + chr1_4:38556649-38556668 None:intergenic 35.0%
AAGCACTAGTGAGATTGATT+GGG + chr1_4:38556987-38557006 None:intergenic 35.0%
TAAGCACTAGTGAGATTGAT+TGG + chr1_4:38556988-38557007 None:intergenic 35.0%
AGTTCAATCCTACAGTCAAT+AGG + chr1_4:38557166-38557185 None:intergenic 35.0%
TTGACTGTAGGATTGAACTT+TGG - chr1_4:38557167-38557186 Msa0162170:intron 35.0%
AGTGCAAAGATTGTGAGAAA+AGG + chr1_4:38557319-38557338 None:intergenic 35.0%
ACAAGATCAAACGCATAAGT+TGG + chr1_4:38557673-38557692 None:intergenic 35.0%
AAAGATCTTCCAGATGTTGA+AGG - chr1_4:38557768-38557787 Msa0162170:intron 35.0%
!! GCTACCACTCTTTTATTTGT+TGG - chr1_4:38557940-38557959 Msa0162170:CDS 35.0%
TCGACCTTTGCTACAAAATT+AGG - chr1_4:38558018-38558037 Msa0162170:intron 35.0%
AACATTTCTTTCCTTGGTTC+TGG - chr1_4:38558048-38558067 Msa0162170:intron 35.0%
GACAAGTTAATATTCACCTG+TGG + chr1_4:38558123-38558142 None:intergenic 35.0%
ACAACACCACAACTTACATA+AGG + chr1_4:38558190-38558209 None:intergenic 35.0%
! CTGGTAGTTACATCTTTTAG+GGG - chr1_4:38558787-38558806 Msa0162170:intron 35.0%
!! TTACATCTTTTAGGGGTTGA+AGG - chr1_4:38558794-38558813 Msa0162170:intron 35.0%
GAGAAAATTTAGTCAGAAGG+AGG - chr1_4:38558831-38558850 Msa0162170:CDS 35.0%
CCACTTAAAGTAATCAAGCA+AGG + chr1_4:38558859-38558878 None:intergenic 35.0%
CCTTGCTTGATTACTTTAAG+TGG - chr1_4:38558856-38558875 Msa0162170:CDS 35.0%
!!! CTTCCGTTTGTTTTAGATTC+TGG - chr1_4:38558887-38558906 Msa0162170:CDS 35.0%
GTTATGTAAATACGCCATTG+CGG + chr1_4:38559405-38559424 None:intergenic 35.0%
ACATAACAGATGCAGATCTT+TGG - chr1_4:38559418-38559437 Msa0162170:intron 35.0%
!!! GTACTTTTGGCTTTTGATCA+AGG + chr1_4:38559656-38559675 None:intergenic 35.0%
TGTTTATCCAAGCAGAAACA+GGG + chr1_4:38559778-38559797 None:intergenic 35.0%
AACATAAAACAGAGTGAAGC+TGG - chr1_4:38559868-38559887 Msa0162170:intron 35.0%
ACATAAAACAGAGTGAAGCT+GGG - chr1_4:38559869-38559888 Msa0162170:intron 35.0%
TCTGAACTACTATATGTTGC+AGG - chr1_4:38560057-38560076 Msa0162170:intron 35.0%
!! CAGGATTCTATCGATTCATA+TGG - chr1_4:38560089-38560108 Msa0162170:intron 35.0%
! TCCGGATTTGTCTTATTGAT+CGG + chr1_4:38560233-38560252 None:intergenic 35.0%
GCCATGAGAATTGTATACAA+CGG - chr1_4:38560353-38560372 Msa0162170:CDS 35.0%
!! ATGGATGATGGAGATTTCAA+TGG + chr1_4:38560391-38560410 None:intergenic 35.0%
ATCTCCATCATCCATTAGAA+AGG - chr1_4:38560396-38560415 Msa0162170:CDS 35.0%
TCTCCATCATCCATTAGAAA+GGG - chr1_4:38560397-38560416 Msa0162170:CDS 35.0%
GACACACAAACGTTTGATGA+AGG + chr1_4:38554565-38554584 None:intergenic 40.0%
AAGAAGTAGAGAGCTCCATA+AGG + chr1_4:38554618-38554637 None:intergenic 40.0%
CACATTCCATAATTCCCACA+TGG - chr1_4:38554656-38554675 Msa0162170:three_prime_UTR 40.0%
GGAATTCCATGTGGGAATTA+TGG + chr1_4:38554665-38554684 None:intergenic 40.0%
GTTGTGGATTTAGCTGAAGT+GGG + chr1_4:38554712-38554731 None:intergenic 40.0%
!!! TTTGGAAGATTTTGGGGTTG+TGG + chr1_4:38554728-38554747 None:intergenic 40.0%
CAACCCCAAAATCTTCCAAA+CGG - chr1_4:38554728-38554747 Msa0162170:three_prime_UTR 40.0%
! CCAAACCGTTTGGAAGATTT+TGG + chr1_4:38554736-38554755 None:intergenic 40.0%
CCAAAATCTTCCAAACGGTT+TGG - chr1_4:38554733-38554752 Msa0162170:three_prime_UTR 40.0%
!! TCCAAACGGTTTGGTTCAAT+TGG - chr1_4:38554742-38554761 Msa0162170:three_prime_UTR 40.0%
!! CCAAACGGTTTGGTTCAATT+GGG - chr1_4:38554743-38554762 Msa0162170:three_prime_UTR 40.0%
AGTGTAAACCCATTTCCATC+AGG - chr1_4:38554821-38554840 Msa0162170:three_prime_UTR 40.0%
GTGTAAACCCATTTCCATCA+GGG - chr1_4:38554822-38554841 Msa0162170:three_prime_UTR 40.0%
CAACATACCCTGATGGAAAT+GGG + chr1_4:38554832-38554851 None:intergenic 40.0%
ACAACATACCCTGATGGAAA+TGG + chr1_4:38554833-38554852 None:intergenic 40.0%
ATAAATACGGGTACGGGATA+CGG + chr1_4:38555333-38555352 None:intergenic 40.0%
TCCCGTACCCGTATTTATAT+CGG - chr1_4:38555335-38555354 Msa0162170:intron 40.0%
ACCCGATATAAATACGGGTA+CGG + chr1_4:38555340-38555359 None:intergenic 40.0%
ACGGAAGCAAAACGAAATGA+CGG - chr1_4:38555571-38555590 Msa0162170:intron 40.0%
ACAGAGAAATGCAGCTGATA+CGG + chr1_4:38555718-38555737 None:intergenic 40.0%
TCACAATGTATTGCGACCAT+TGG - chr1_4:38555759-38555778 Msa0162170:intron 40.0%
! TTTTATCGAAGTGGTCCACT+CGG - chr1_4:38555809-38555828 Msa0162170:intron 40.0%
GTAACCAACGGAAAAATCAG+TGG + chr1_4:38556073-38556092 None:intergenic 40.0%
AAGAACCTAATGCTGTACCA+CGG + chr1_4:38556301-38556320 None:intergenic 40.0%
CACTATCGTTTACAGTGCTT+TGG - chr1_4:38556403-38556422 Msa0162170:intron 40.0%
!! GGTCTTTTTGCTCTGATTTG+TGG - chr1_4:38556491-38556510 Msa0162170:intron 40.0%
! TTTGCTCTGATTTGTGGGAA+TGG - chr1_4:38556497-38556516 Msa0162170:intron 40.0%
TGGCAAGAAATGTGCAAAAG+GGG + chr1_4:38556647-38556666 None:intergenic 40.0%
CCTGCAGCTATAGGTAAATA+AGG + chr1_4:38557089-38557108 None:intergenic 40.0%
! CCTTATTTACCTATAGCTGC+AGG - chr1_4:38557086-38557105 Msa0162170:CDS 40.0%
ATCTTTCTGTCCAATCTGCA+TGG - chr1_4:38557111-38557130 Msa0162170:intron 40.0%
TAACCAAGAACCATGCAGAT+TGG + chr1_4:38557124-38557143 None:intergenic 40.0%
GTTATATTCTTTGCAGCAGC+TGG - chr1_4:38557140-38557159 Msa0162170:intron 40.0%
GCAAAGATTGTGAGAAAAGG+AGG + chr1_4:38557316-38557335 None:intergenic 40.0%
TTGACAGAAGAGACTTATGC+AGG - chr1_4:38557393-38557412 Msa0162170:CDS 40.0%
! CGCGGTTTTCTACTAAACTT+TGG - chr1_4:38557418-38557437 Msa0162170:intron 40.0%
! AACGCATAAGTTGGAGACAA+TGG + chr1_4:38557664-38557683 None:intergenic 40.0%
GTTAAGGGTTGCAAGTTCAT+TGG - chr1_4:38557822-38557841 Msa0162170:intron 40.0%
TTGTAGCAAAGGTCGATATC+TGG + chr1_4:38558014-38558033 None:intergenic 40.0%
GTTCGGAACATTTCTTTCCT+TGG - chr1_4:38558042-38558061 Msa0162170:intron 40.0%
TCAGCAAAATTCCAGAACCA+AGG + chr1_4:38558062-38558081 None:intergenic 40.0%
!! TAAGTTGTGGTGTTGTTGAC+AGG - chr1_4:38558194-38558213 Msa0162170:intron 40.0%
GAAGCAAATATTGCATGAGC+TGG + chr1_4:38558243-38558262 None:intergenic 40.0%
TGCTTCAAGCTTGATTTACC+AGG - chr1_4:38558257-38558276 Msa0162170:intron 40.0%
TGCTCCCTTATCATTGATGT+AGG + chr1_4:38559001-38559020 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_4:38559070-38559089 None:intergenic 40.0%
GTTGCGTACAATACACCAAA+TGG + chr1_4:38559074-38559093 None:intergenic 40.0%
ACAACTTTAATGTTGCGCCA+TGG - chr1_4:38559168-38559187 Msa0162170:intron 40.0%
TATAAAGCTCCTGTCATGGA+AGG - chr1_4:38559252-38559271 Msa0162170:intron 40.0%
!!! GATTTTTTTACAACCGCCAC+TGG - chr1_4:38559340-38559359 Msa0162170:intron 40.0%
!! TAAGTGTTGTAGATAGCGGA+AGG + chr1_4:38559457-38559476 None:intergenic 40.0%
! ATATCGACTAGTTCAAGTCG+AGG - chr1_4:38559555-38559574 Msa0162170:intron 40.0%
!!! TTTTGGCTTTTGATCAAGGC+TGG + chr1_4:38559652-38559671 None:intergenic 40.0%
!! TGGGCTTCGTAAAGTACTTT+TGG + chr1_4:38559669-38559688 None:intergenic 40.0%
TTTCAAGACACCATCTTTGC+TGG - chr1_4:38559721-38559740 Msa0162170:intron 40.0%
TTCAAGACACCATCTTTGCT+GGG - chr1_4:38559722-38559741 Msa0162170:intron 40.0%
! CATCTTTGCTGGGTTTTTGT+GGG - chr1_4:38559732-38559751 Msa0162170:intron 40.0%
GTTTATCCAAGCAGAAACAG+GGG + chr1_4:38559777-38559796 None:intergenic 40.0%
CTGTTTATCCAAGCAGAAAC+AGG + chr1_4:38559779-38559798 None:intergenic 40.0%
ATGTTGCAGGAAGCAATATC+AGG - chr1_4:38560070-38560089 Msa0162170:intron 40.0%
!! AGCACAGTTTGCTAGATGAA+AGG + chr1_4:38560145-38560164 None:intergenic 40.0%
GCCGATCAATAAGACAAATC+CGG - chr1_4:38560229-38560248 Msa0162170:intron 40.0%
GCCGTTGTATACAATTCTCA+TGG + chr1_4:38560357-38560376 None:intergenic 40.0%
GATTTCAATGGACCTTCATG+TGG + chr1_4:38560379-38560398 None:intergenic 40.0%
CTCCATCATCCATTAGAAAG+GGG - chr1_4:38560398-38560417 Msa0162170:CDS 40.0%
TCCATCATCCATTAGAAAGG+GGG - chr1_4:38560399-38560418 Msa0162170:CDS 40.0%
GGTGGAGATCATGAAATATG+AGG - chr1_4:38560458-38560477 Msa0162170:CDS 40.0%
GTCTAAACTGTATGCTAGCA+AGG + chr1_4:38560515-38560534 None:intergenic 40.0%
ACAGTTTAGACCGCAAGTTA+AGG - chr1_4:38560524-38560543 Msa0162170:five_prime_UTR 40.0%
CAGTTTAGACCGCAAGTTAA+GGG - chr1_4:38560525-38560544 Msa0162170:five_prime_UTR 40.0%
! AAGGTGTTCTTGCTGATGTG+GGG + chr1_4:38554546-38554565 None:intergenic 45.0%
!! GAAGGTGTTCTTGCTGATGT+GGG + chr1_4:38554547-38554566 None:intergenic 45.0%
!! TGAAGGTGTTCTTGCTGATG+TGG + chr1_4:38554548-38554567 None:intergenic 45.0%
!! AGTGTTGCTTCAGCTCCTTA+TGG - chr1_4:38554600-38554619 Msa0162170:three_prime_UTR 45.0%
GGTTGTGGATTTAGCTGAAG+TGG + chr1_4:38554713-38554732 None:intergenic 45.0%
CCCAATTGAACCAAACCGTT+TGG + chr1_4:38554746-38554765 None:intergenic 45.0%
CCCGATATAAATACGGGTAC+GGG + chr1_4:38555339-38555358 None:intergenic 45.0%
CCCGTACCCGTATTTATATC+GGG - chr1_4:38555336-38555355 Msa0162170:intron 45.0%
TGTCTATGTTGCATGCACAC+GGG + chr1_4:38555375-38555394 None:intergenic 45.0%
CTGTCTATGTTGCATGCACA+CGG + chr1_4:38555376-38555395 None:intergenic 45.0%
CGGAAGCAAAACGAAATGAC+GGG - chr1_4:38555572-38555591 Msa0162170:intron 45.0%
GGAAGCAAAACGAAATGACG+GGG - chr1_4:38555573-38555592 Msa0162170:intron 45.0%
! AGCCGCAATGTCAAGGTTTT+TGG - chr1_4:38555653-38555672 Msa0162170:intron 45.0%
! GCCGCAATGTCAAGGTTTTT+GGG - chr1_4:38555654-38555673 Msa0162170:intron 45.0%
CCCCAAAAACCTTGACATTG+CGG + chr1_4:38555658-38555677 None:intergenic 45.0%
! CCGCAATGTCAAGGTTTTTG+GGG - chr1_4:38555655-38555674 Msa0162170:intron 45.0%
GGACTTTGCAACTGCAATTG+TGG - chr1_4:38555676-38555695 Msa0162170:intron 45.0%
ATTGTGGCCGTATCCAATTG+TGG - chr1_4:38555692-38555711 Msa0162170:intron 45.0%
GATACGGCCACAATTGGATA+CGG + chr1_4:38555702-38555721 None:intergenic 45.0%
ATGTATTGCGACCATTGGCA+AGG - chr1_4:38555764-38555783 Msa0162170:intron 45.0%
! TGATCGCTATTAGTACCGAG+TGG + chr1_4:38555827-38555846 None:intergenic 45.0%
!! ATCGACAGTAAAAGCGTTGC+TGG - chr1_4:38555908-38555927 Msa0162170:intron 45.0%
ACTATCCGTGGTACAGCATT+AGG - chr1_4:38556293-38556312 Msa0162170:intron 45.0%
AGCTGCAAGCAACACATTGA+TGG + chr1_4:38556344-38556363 None:intergenic 45.0%
AAGGGGACGAAAGAGAGAAA+AGG + chr1_4:38556630-38556649 None:intergenic 45.0%
GAAAGATCTCCTGCAGCTAT+AGG + chr1_4:38557098-38557117 None:intergenic 45.0%
TGTCCAATCTGCATGGTTCT+TGG - chr1_4:38557118-38557137 Msa0162170:intron 45.0%
! TACTCCTTCGGCCTTTTTCT+TGG - chr1_4:38557209-38557228 Msa0162170:intron 45.0%
AGTACCAAGAAAAAGGCCGA+AGG + chr1_4:38557216-38557235 None:intergenic 45.0%
TTTCATCCTAAGCGGAGGAA+CGG + chr1_4:38557246-38557265 None:intergenic 45.0%
!! GGAAAGCGTTTCATCCTAAG+CGG + chr1_4:38557254-38557273 None:intergenic 45.0%
AAGAGACTTATGCAGGTACG+CGG - chr1_4:38557400-38557419 Msa0162170:CDS 45.0%
!! CTCTTGGACTTGCTTTTGAG+TGG - chr1_4:38557464-38557483 Msa0162170:intron 45.0%
!! TTGGACTTGCTTTTGAGTGG+AGG - chr1_4:38557467-38557486 Msa0162170:intron 45.0%
CTACGATCTCCTTCAACATC+TGG + chr1_4:38557780-38557799 None:intergenic 45.0%
CAGATGTTGAAGGAGATCGT+AGG - chr1_4:38557778-38557797 Msa0162170:intron 45.0%
GGCAGCAATTTATATGCCAC+AGG - chr1_4:38558104-38558123 Msa0162170:intron 45.0%
GATTTACCAGGTTCGATGAG+CGG - chr1_4:38558269-38558288 Msa0162170:intron 45.0%
ATTAATCCGCTCATCGAACC+TGG + chr1_4:38558278-38558297 None:intergenic 45.0%
!! AGAAGTACCTCTGCTTGTTC+TGG - chr1_4:38558768-38558787 Msa0162170:intron 45.0%
GTAACTACCAGAACAAGCAG+AGG + chr1_4:38558778-38558797 None:intergenic 45.0%
!! CATCTTTTAGGGGTTGAAGG+AGG - chr1_4:38558797-38558816 Msa0162170:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_4:38559071-38559090 None:intergenic 45.0%
GACTTGAACCCGTAACCTTT+CGG - chr1_4:38559135-38559154 Msa0162170:intron 45.0%
TTACGTGACCGAAAGGTTAC+GGG + chr1_4:38559146-38559165 None:intergenic 45.0%
GTTACGTGACCGAAAGGTTA+CGG + chr1_4:38559147-38559166 None:intergenic 45.0%
! GTTGTTGTTACGTGACCGAA+AGG + chr1_4:38559153-38559172 None:intergenic 45.0%
CGTCTATAAAGCTCCTGTCA+TGG - chr1_4:38559248-38559267 Msa0162170:intron 45.0%
! GTGTTGTTAAATGGCGGCTA+TGG - chr1_4:38559315-38559334 Msa0162170:intron 45.0%
ATCCCTTCACAAATTGCCAG+TGG + chr1_4:38559359-38559378 None:intergenic 45.0%
ACTGGCAATTTGTGAAGGGA+TGG - chr1_4:38559358-38559377 Msa0162170:intron 45.0%
TAGCGGAAGGCAGAATATGA+AGG + chr1_4:38559444-38559463 None:intergenic 45.0%
CTCAACGTAACAGTTGGAGT+TGG + chr1_4:38559487-38559506 None:intergenic 45.0%
CAACTCCAACTGTTACGTTG+AGG - chr1_4:38559485-38559504 Msa0162170:intron 45.0%
! ATGAGTTTTCCCCTTCAGGT+TGG + chr1_4:38559589-38559608 None:intergenic 45.0%
! TTGGATGAGTTTTCCCCTTC+AGG + chr1_4:38559593-38559612 None:intergenic 45.0%
CCACAAAAACCCAGCAAAGA+TGG + chr1_4:38559734-38559753 None:intergenic 45.0%
! CCATCTTTGCTGGGTTTTTG+TGG - chr1_4:38559731-38559750 Msa0162170:intron 45.0%
! GTCTTATTGATCGGCTGCTT+TGG + chr1_4:38560224-38560243 None:intergenic 45.0%
!! GGCTTTAAAGCACTAGGATC+CGG + chr1_4:38560251-38560270 None:intergenic 45.0%
!! GGATCCTAGTGCTTTAAAGC+CGG - chr1_4:38560250-38560269 Msa0162170:intron 45.0%
!! TTGACCGGCTTTAAAGCACT+AGG + chr1_4:38560257-38560276 None:intergenic 45.0%
TGTATACAACGGCCACATGA+AGG - chr1_4:38560364-38560383 Msa0162170:CDS 45.0%
CCATCATCCATTAGAAAGGG+GGG - chr1_4:38560400-38560419 Msa0162170:CDS 45.0%
GAGCTGAAGCAACACTCAAC+TGG + chr1_4:38554596-38554615 None:intergenic 50.0%
GTGGATTTAGCTGAAGTGGG+TGG + chr1_4:38554709-38554728 None:intergenic 50.0%
TAGTTGCAGCCGCAATGTCA+AGG - chr1_4:38555646-38555665 Msa0162170:intron 50.0%
!!! GCAGCCACTGATTTTTCCGT+TGG - chr1_4:38556066-38556085 Msa0162170:intron 50.0%
CTAAGGCCACATACTATCCG+TGG - chr1_4:38556281-38556300 Msa0162170:intron 50.0%
GCTGTACCACGGATAGTATG+TGG + chr1_4:38556290-38556309 None:intergenic 50.0%
TCTATTCCGTTCCTCCGCTT+AGG - chr1_4:38557237-38557256 Msa0162170:intron 50.0%
AAGCGTTTCATCCTAAGCGG+AGG + chr1_4:38557251-38557270 None:intergenic 50.0%
! AAGTCCAAGAGCAGCTCTAG+TGG + chr1_4:38557455-38557474 None:intergenic 50.0%
AAAAACCACAGGAGAGCTGC+AGG + chr1_4:38557703-38557722 None:intergenic 50.0%
!! GGTGTTGTTGACAGGCTTTC+AGG - chr1_4:38558202-38558221 Msa0162170:intron 50.0%
GTTGACAGGCTTTCAGGAGA+TGG - chr1_4:38558208-38558227 Msa0162170:intron 50.0%
TCAATGATAAGGGAGCAGCC+TGG - chr1_4:38559004-38559023 Msa0162170:intron 50.0%
ATCCCAGATGCTGTGTATGC+CGG + chr1_4:38559042-38559061 None:intergenic 50.0%
! TTCCACAAGAGGCTGTTTCC+AGG - chr1_4:38559113-38559132 Msa0162170:intron 50.0%
AAGGTTACGGGTTCAAGTCC+TGG + chr1_4:38559134-38559153 None:intergenic 50.0%
ATATCATTGAAGGGGGGCCA+TGG + chr1_4:38559188-38559207 None:intergenic 50.0%
! GACAGGAGCTTTATAGACGC+AGG + chr1_4:38559247-38559266 None:intergenic 50.0%
CTCCTGTCATGGAAGGTCTA+GGG - chr1_4:38559259-38559278 Msa0162170:intron 50.0%
CCTTCACAAATTGCCAGTGG+CGG + chr1_4:38559356-38559375 None:intergenic 50.0%
CGCCACTGGCAATTTGTGAA+GGG - chr1_4:38559354-38559373 Msa0162170:intron 50.0%
TTGTGAAGGGATGGCTGCTA+CGG - chr1_4:38559367-38559386 Msa0162170:intron 50.0%
AAATACGCCATTGCGGCCTA+TGG + chr1_4:38559398-38559417 None:intergenic 50.0%
! TCGACTAGTTCAAGTCGAGG+TGG - chr1_4:38559558-38559577 Msa0162170:intron 50.0%
! CGACTAGTTCAAGTCGAGGT+GGG - chr1_4:38559559-38559578 Msa0162170:intron 50.0%
! TGCTGGGTTTTTGTGGGTCA+AGG - chr1_4:38559738-38559757 Msa0162170:intron 50.0%
! ACTGCTGCATTTCTGGATGC+AGG + chr1_4:38560194-38560213 None:intergenic 50.0%
TCGAGCAACTGCTGCATTTC+TGG + chr1_4:38560201-38560220 None:intergenic 50.0%
! CCCCCCTTTCTAATGGATGA+TGG + chr1_4:38560403-38560422 None:intergenic 50.0%
TCTCTCTCCCCCCTTTCTAA+TGG + chr1_4:38560410-38560429 None:intergenic 50.0%
! TCCAAACGGCCCTTAACTTG+CGG + chr1_4:38560537-38560556 None:intergenic 50.0%
ATGTTGCATGCACACGGGTC+CGG + chr1_4:38555370-38555389 None:intergenic 55.0%
GCAGCTGATACGGCCACAAT+TGG + chr1_4:38555708-38555727 None:intergenic 55.0%
TTGCAGGCCTGCAGTGAAGT+TGG - chr1_4:38556191-38556210 Msa0162170:intron 55.0%
! GCAGCTGGCCTATTGACTGT+AGG - chr1_4:38557155-38557174 Msa0162170:intron 55.0%
TACGCCACTAGAGCTGCTCT+TGG - chr1_4:38557448-38557467 Msa0162170:intron 55.0%
CTCCGGCATACACAGCATCT+GGG - chr1_4:38559037-38559056 Msa0162170:intron 55.0%
GGCATACACAGCATCTGGGA+TGG - chr1_4:38559041-38559060 Msa0162170:intron 55.0%
TGGGATGGTGTCCCACCATT+TGG - chr1_4:38559056-38559075 Msa0162170:intron 55.0%
GTCCTGGAAACAGCCTCTTG+TGG + chr1_4:38559118-38559137 None:intergenic 55.0%
GCTCCTGTCATGGAAGGTCT+AGG - chr1_4:38559258-38559277 Msa0162170:intron 55.0%
GTCCCTAGACCTTCCATGAC+AGG + chr1_4:38559264-38559283 None:intergenic 55.0%
CCGCCACTGGCAATTTGTGA+AGG - chr1_4:38559353-38559372 Msa0162170:intron 55.0%
GGGAGCCTCAACGTAACAGT+TGG + chr1_4:38559493-38559512 None:intergenic 55.0%
CTAGTTCAAGTCGAGGTGGG+TGG - chr1_4:38559562-38559581 Msa0162170:intron 55.0%
! GTGGGTCAAGGCATCTTTGC+CGG - chr1_4:38559750-38559769 Msa0162170:intron 55.0%
TCCAAGCAGAAACAGGGGAC+CGG + chr1_4:38559772-38559791 None:intergenic 55.0%
ACCGCAAGTTAAGGGCCGTT+TGG - chr1_4:38560533-38560552 Msa0162170:five_prime_UTR 55.0%
GGCCTGCAGTGAAGTTGGAG+CGG - chr1_4:38556196-38556215 Msa0162170:intron 60.0%
AGCCGCTCCAACTTCACTGC+AGG + chr1_4:38556201-38556220 None:intergenic 60.0%
TGCAGTGAAGTTGGAGCGGC+TGG - chr1_4:38556200-38556219 Msa0162170:intron 60.0%
AACCACAGGAGAGCTGCAGG+CGG + chr1_4:38557700-38557719 None:intergenic 60.0%
AGCCTGGTGCACTACAGCTC+CGG - chr1_4:38559020-38559039 Msa0162170:intron 60.0%
GCTCCGGCATACACAGCATC+TGG - chr1_4:38559036-38559055 Msa0162170:intron 60.0%
!! GGCTGCTACGGAAGTGCCAT+AGG - chr1_4:38559379-38559398 Msa0162170:intron 60.0%
!! GGAAGTGCCATAGGCCGCAA+TGG - chr1_4:38559388-38559407 Msa0162170:intron 60.0%
AGGTGGGTGGACCAACCTGA+AGG - chr1_4:38559575-38559594 Msa0162170:intron 60.0%
GGTGGGTGGACCAACCTGAA+GGG - chr1_4:38559576-38559595 Msa0162170:intron 60.0%
GTGGGTGGACCAACCTGAAG+GGG - chr1_4:38559577-38559596 Msa0162170:intron 60.0%
ATCCGCCTGCAGCTCTCCTG+TGG - chr1_4:38557695-38557714 Msa0162170:CDS 65.0%
TGCCGGAGCTGTAGTGCACC+AGG + chr1_4:38559025-38559044 None:intergenic 65.0%
!! GCCGGTCCCCTGTTTCTGCT+TGG - chr1_4:38559768-38559787 Msa0162170:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 38554527 38560607 38554527 ID=Msa0162170;Name=Msa0162170
chr1_4 mRNA 38554527 38560607 38554527 ID=Msa0162170-mRNA-1;Parent=Msa0162170;Name=Msa0162170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=92|0.88|0.8|1|0.77|0.7|10|454|350
chr1_4 exon 38554527 38555055 38554527 ID=Msa0162170-mRNA-1:exon:11286;Parent=Msa0162170-mRNA-1
chr1_4 exon 38556506 38556538 38556506 ID=Msa0162170-mRNA-1:exon:11285;Parent=Msa0162170-mRNA-1
chr1_4 exon 38556856 38556918 38556856 ID=Msa0162170-mRNA-1:exon:11284;Parent=Msa0162170-mRNA-1
chr1_4 exon 38557009 38557126 38557009 ID=Msa0162170-mRNA-1:exon:11283;Parent=Msa0162170-mRNA-1
chr1_4 exon 38557335 38557427 38557335 ID=Msa0162170-mRNA-1:exon:11282;Parent=Msa0162170-mRNA-1
chr1_4 exon 38557646 38557719 38557646 ID=Msa0162170-mRNA-1:exon:11281;Parent=Msa0162170-mRNA-1
chr1_4 exon 38557833 38557978 38557833 ID=Msa0162170-mRNA-1:exon:11280;Parent=Msa0162170-mRNA-1
chr1_4 exon 38558616 38558716 38558616 ID=Msa0162170-mRNA-1:exon:11279;Parent=Msa0162170-mRNA-1
chr1_4 exon 38558813 38558937 38558813 ID=Msa0162170-mRNA-1:exon:11278;Parent=Msa0162170-mRNA-1
chr1_4 exon 38560291 38560607 38560291 ID=Msa0162170-mRNA-1:exon:11277;Parent=Msa0162170-mRNA-1
chr1_4 five_prime_UTR 38560516 38560607 38560516 ID=Msa0162170-mRNA-1:five_prime_utr;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38560291 38560515 38560291 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38558813 38558937 38558813 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38558616 38558716 38558616 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38557833 38557978 38557833 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38557646 38557719 38557646 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38557335 38557427 38557335 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38557009 38557126 38557009 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38556856 38556918 38556856 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38556506 38556538 38556506 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 CDS 38554981 38555055 38554981 ID=Msa0162170-mRNA-1:cds;Parent=Msa0162170-mRNA-1
chr1_4 three_prime_UTR 38554527 38554980 38554527 ID=Msa0162170-mRNA-1:three_prime_utr;Parent=Msa0162170-mRNA-1
Gene Sequence

>Msa0162170

ATGGAGCTCTCTACTTCTTCATCTTCTTCTCTTCATTCACATTCCATAATTCCCACATGGAATTCCAAAAACTACTACTCTTTCAAACCACCCACTTCAGCTAAATCCACAACCCCAAAATCTTCCAAACGGTTTGGTTCAATTGGGCTATACCATCATCATCACACAAGTTTCTCAGCTCATGTTTCAAAACTGAAGAGACAGTGTAAACCCATTTCCATCAGGGCCTGCAGTGAAGTTGGAGCGGCTGGATCTGATCGTCCATTTGCTGACAAAGTTTTGGATTTTAAAGATGCATTCTGGAGATTTCTAAGGCCACATACTATCCGTGGTACAGCATTAGGTTCTTTTGCTTTGGTGTCAAGAGCGTTGATTGAGAACTCAAATCTGATAAAGTGGTCTCTTTTGTTGAAAGCATTCTCTGGTCTTTTTGCTCTGATTTGTGGGAATGCAGCTGGCCTATTGACTGTAGGATTGAACTTTGGACCTTTTATTTTTTCTCTTTACTCCTTCGGCCTTTTTCTTGGTACTATCTATTCCGTTCCTCCGCTTAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATTATTGCTACGGTACGCGGTTTTCTACTAAACTTTGGTGTGTACTACGCCACTAGAGCTGCTCTTGGACTTGCTTTTGAGTGGAGCTCTCCTGTGGTTTTTATCACAACTTTCGTAACATTTTTCGCATTGGTAATTGCTATAACAAAAGATCTTCCAGATGTTGAAGGAGATCGTAGGTACCAGATATCGACCTTTGCTACAAAATTAGGAGTTCGGAACATTTCTTTCCTTGGTTCTGGAATTTTGCTGATGAACTATGTTGTTACCATATTGGCAGCAATTTATATGCCACAGGCTTTCAGGAGATGGTTACTGATACCAGCTCATGCAATATTTGCTTCAAGCTTGATTTACCAGGTGCAGATATTAGAAAAAGCAAATTATACAAAGGAAGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCATTATTTCCTTTCATCTAG

Protein sequence

>Msa0162170

MELSTSSSSSLHSHSIIPTWNSKNYYSFKPPTSAKSTTPKSSKRFGSIGLYHHHHTSFSAHVSKLKRQCKPISIRACSEVGAAGSDRPFADKVLDFKDAFWRFLRPHTIRGTALGSFALVSRALIENSNLIKWSLLLKAFSGLFALICGNAAGLLTVGLNFGPFIFSLYSFGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRRYQISTFATKLGVRNISFLGSGILLMNYVVTILAAIYMPQAFRRWLLIPAHAIFASSLIYQVQILEKANYTKEAISGFYRFIWNLFYAEYALFPFI*