Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847310 | XP_003614164.1 | 97.619 | 126 | 3 | 0 | 46 | 171 | 1 | 126 | 1.46e-84 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847310 | sp|Q9FDW8|CYB5A_ARATH | 50.000 | 134 | 58 | 2 | 46 | 170 | 1 | 134 | 4.13e-43 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847310 | G7JZ43 | 97.619 | 126 | 3 | 0 | 46 | 171 | 1 | 126 | 6.98e-85 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0847310 | Msa0998560 | 0.809550 | 1.790657e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847310 | MtrunA17_Chr5g0419651 | 97.619 | 126 | 3 | 0 | 46 | 171 | 1 | 126 | 1.34e-88 | 254 |
| Msa0847310 | MtrunA17_Chr8g0346311 | 63.095 | 84 | 31 | 0 | 46 | 129 | 1 | 84 | 2.50e-35 | 120 |
| Msa0847310 | MtrunA17_Chr3g0127451 | 59.524 | 84 | 34 | 0 | 46 | 129 | 1 | 84 | 1.76e-33 | 115 |
| Msa0847310 | MtrunA17_Chr4g0010061 | 39.231 | 130 | 62 | 2 | 53 | 170 | 21 | 145 | 1.70e-29 | 105 |
| Msa0847310 | MtrunA17_Chr7g0276081 | 54.545 | 77 | 35 | 0 | 53 | 129 | 9 | 85 | 1.40e-28 | 103 |
| Msa0847310 | MtrunA17_Chr3g0134591 | 41.558 | 77 | 45 | 0 | 53 | 129 | 7 | 83 | 1.76e-21 | 85.1 |
| Msa0847310 | MtrunA17_Chr5g0424491 | 48.515 | 101 | 44 | 2 | 46 | 139 | 513 | 612 | 1.59e-20 | 87.8 |
| Msa0847310 | MtrunA17_Chr3g0115151 | 49.398 | 83 | 41 | 1 | 46 | 128 | 457 | 538 | 1.05e-18 | 82.4 |
| Msa0847310 | MtrunA17_Chr6g0486891 | 40.449 | 89 | 52 | 1 | 38 | 126 | 31 | 118 | 1.14e-18 | 77.0 |
| Msa0847310 | MtrunA17_Chr3g0115131 | 50.633 | 79 | 38 | 1 | 50 | 128 | 516 | 593 | 8.78e-18 | 79.7 |
| Msa0847310 | MtrunA17_Chr1g0151391 | 35.135 | 74 | 47 | 1 | 52 | 125 | 13 | 85 | 4.63e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847310 | AT1G26340.1 | 50.000 | 134 | 58 | 2 | 46 | 170 | 1 | 134 | 4.19e-44 | 142 |
| Msa0847310 | AT2G32720.1 | 43.750 | 128 | 55 | 2 | 50 | 165 | 5 | 127 | 1.62e-34 | 118 |
| Msa0847310 | AT5G48810.1 | 56.627 | 83 | 35 | 1 | 53 | 134 | 8 | 90 | 3.40e-33 | 115 |
| Msa0847310 | AT5G53560.1 | 58.025 | 81 | 34 | 0 | 54 | 134 | 9 | 89 | 6.59e-32 | 112 |
| Msa0847310 | AT2G46650.1 | 51.724 | 87 | 42 | 0 | 49 | 135 | 1 | 87 | 2.71e-30 | 107 |
| Msa0847310 | AT2G32720.2 | 43.243 | 111 | 46 | 2 | 67 | 165 | 22 | 127 | 3.88e-25 | 94.7 |
| Msa0847310 | AT1G77760.1 | 49.485 | 97 | 44 | 2 | 46 | 138 | 541 | 636 | 2.62e-20 | 87.4 |
| Msa0847310 | AT1G37130.1 | 48.193 | 83 | 42 | 1 | 46 | 128 | 538 | 619 | 9.61e-20 | 85.9 |
| Msa0847310 | AT1G60660.1 | 43.836 | 73 | 40 | 1 | 53 | 125 | 49 | 120 | 6.66e-18 | 75.5 |
| Msa0847310 | AT3G61580.1 | 30.709 | 127 | 80 | 3 | 48 | 167 | 5 | 130 | 1.22e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATCCTTGGTCTTCTTTC+AGG | 0.100914 | 5_4:+29134248 | None:intergenic |
| AAACCTTTCTTGGTGTAAAT+TGG | 0.177822 | 5_4:+29129889 | None:intergenic |
| TATGTTGAGCTTTGAATTCC+TGG | 0.272702 | 5_4:+29134227 | None:intergenic |
| GATGATCCAGCAATCGTCTT+TGG | 0.291478 | 5_4:+29134066 | None:intergenic |
| ATATGATGTGACACAATATT+TGG | 0.292784 | 5_4:-29130167 | Msa0847310:CDS |
| AAAATGATTAAACATGTTAC+TGG | 0.317390 | 5_4:-29129574 | Msa0847310:three_prime_UTR |
| CAAAAGTGCAAGAGAACTTA+TGG | 0.328002 | 5_4:-29129947 | Msa0847310:CDS |
| CTTTGAATTCCTGGTATCCT+TGG | 0.339536 | 5_4:+29134236 | None:intergenic |
| TGGTTGAGGGTGGTGATTGT+TGG | 0.339797 | 5_4:-29129457 | Msa0847310:three_prime_UTR |
| GCTATGGAGAAACTCAAATA+TGG | 0.345406 | 5_4:+29129835 | None:intergenic |
| TGTTGGAGTGGTAGTTAGTT+TGG | 0.352190 | 5_4:-29129440 | Msa0847310:three_prime_UTR |
| CTTATGGAGAAATATTATAT+TGG | 0.367500 | 5_4:-29129931 | Msa0847310:CDS |
| GTCTCATTGTGGGATGGTTG+AGG | 0.378668 | 5_4:-29129471 | Msa0847310:three_prime_UTR |
| TCTCATTGTGGGATGGTTGA+GGG | 0.394521 | 5_4:-29129470 | Msa0847310:three_prime_UTR |
| TTCCTCTTTCAAAACATCCT+TGG | 0.396244 | 5_4:-29134163 | Msa0847310:CDS |
| GCATGTTTGTGAGTTGTGAT+TGG | 0.396650 | 5_4:+29134137 | None:intergenic |
| ACAAAACCAAAGACGATTGC+TGG | 0.404908 | 5_4:-29134072 | Msa0847310:CDS |
| TTATTATGATAGAGGAACTT+TGG | 0.424513 | 5_4:-29129500 | Msa0847310:three_prime_UTR |
| TCTCCAATTTACACCAAGAA+AGG | 0.431657 | 5_4:-29129892 | Msa0847310:CDS |
| GATGTAATTCTCGACGCAAC+CGG | 0.433257 | 5_4:-29130124 | Msa0847310:intron |
| TTGGTGGTTGGTCTCATTGT+GGG | 0.446725 | 5_4:-29129481 | Msa0847310:three_prime_UTR |
| TTGTTGGTTTCTTATACTTA+CGG | 0.451860 | 5_4:-29129792 | Msa0847310:CDS |
| CAATATTTGGATGACCATCC+TGG | 0.453751 | 5_4:-29130154 | Msa0847310:CDS |
| GTTGGCATCTCAGTGGTTGT+TGG | 0.484323 | 5_4:-29129808 | Msa0847310:CDS |
| GAGGGTGGTGATTGTTGGAG+TGG | 0.484492 | 5_4:-29129452 | Msa0847310:three_prime_UTR |
| GTGGATGGATACATCTTGAA+TGG | 0.493228 | 5_4:+29134093 | None:intergenic |
| TGGTTGGTCTCATTGTGGGA+TGG | 0.497238 | 5_4:-29129477 | Msa0847310:three_prime_UTR |
| ATTGAAGCATAATGTTGCAT+TGG | 0.502328 | 5_4:-29129609 | Msa0847310:three_prime_UTR |
| AGTTTCTCCATAGCCGTAGT+TGG | 0.504644 | 5_4:-29129826 | Msa0847310:CDS |
| GATAGAGGAACTTTGGTGGT+TGG | 0.505886 | 5_4:-29129493 | Msa0847310:three_prime_UTR |
| TGAGATGCCAACTACGGCTA+TGG | 0.510933 | 5_4:+29129819 | None:intergenic |
| CTGGATCATCGTCGACGGAA+AGG | 0.531610 | 5_4:-29134053 | Msa0847310:intron |
| TTTGGTGGTTGGTCTCATTG+TGG | 0.539682 | 5_4:-29129482 | Msa0847310:three_prime_UTR |
| TGAGTTGTGATTGGAGTCCA+AGG | 0.568265 | 5_4:+29134146 | None:intergenic |
| GAAAGAAGACCAAGGATACC+AGG | 0.571114 | 5_4:-29134245 | Msa0847310:CDS |
| AACCACTGAGATGCCAACTA+CGG | 0.572757 | 5_4:+29129813 | None:intergenic |
| TTATGATAGAGGAACTTTGG+TGG | 0.573152 | 5_4:-29129497 | Msa0847310:three_prime_UTR |
| AGAATTACATCATCTCCGCC+AGG | 0.579133 | 5_4:+29130136 | None:intergenic |
| GTGTAGAAATTCGAGAGGGT+CGG | 0.607254 | 5_4:+29134115 | None:intergenic |
| CATTGTGGGATGGTTGAGGG+TGG | 0.616059 | 5_4:-29129467 | Msa0847310:three_prime_UTR |
| TGAAGGGAGAGATGCAACAG+AGG | 0.630115 | 5_4:-29129992 | Msa0847310:intron |
| TGAAAGAGGAAGAGTCTGCA+CGG | 0.640150 | 5_4:+29134175 | None:intergenic |
| GATTGCTGGATCATCGTCGA+CGG | 0.664024 | 5_4:-29134058 | Msa0847310:CDS |
| GAATGGTGTAGAAATTCGAG+AGG | 0.670309 | 5_4:+29134110 | None:intergenic |
| AGCCGTAGTTGGCATCTCAG+TGG | 0.678634 | 5_4:-29129815 | Msa0847310:CDS |
| TTACATCATCTCCGCCAGGA+TGG | 0.682566 | 5_4:+29130140 | None:intergenic |
| CTCCGTCCTATGAAACCGTG+TGG | 0.684122 | 5_4:-29134287 | None:intergenic |
| TCATGAGTCAACAAACCACA+CGG | 0.689030 | 5_4:+29134272 | None:intergenic |
| AATGGTGTAGAAATTCGAGA+GGG | 0.715874 | 5_4:+29134111 | None:intergenic |
| ATGAACCTGAAAGAAGACCA+AGG | 0.716319 | 5_4:-29134253 | Msa0847310:CDS |
| TATTTGGATGACCATCCTGG+CGG | 0.753839 | 5_4:-29130151 | Msa0847310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGAAAAAATTTTGTTTT+TGG | - | chr5_4:29131018-29131037 | Msa0847310:intron | 10.0% |
| !!! | GTAAAAAAAAAAATTGTTTT+TGG | + | chr5_4:29131249-29131268 | None:intergenic | 10.0% |
| !!! | AAAACAATTTTTTTTTTTAC+AGG | - | chr5_4:29131249-29131268 | Msa0847310:intron | 10.0% |
| !!! | AAACAATTTTTTTTTTTACA+GGG | - | chr5_4:29131250-29131269 | Msa0847310:intron | 10.0% |
| !!! | ATAAATTCTTATTGTTTTAA+TGG | + | chr5_4:29132101-29132120 | Msa0847320:intron | 10.0% |
| !! | AAAAATATATGAAATATTAC+CGG | + | chr5_4:29133608-29133627 | None:intergenic | 10.0% |
| !!! | TTAATTGTCATTTTGTAATT+TGG | - | chr5_4:29129750-29129769 | Msa0847310:three_prime_UTR | 15.0% |
| !! | AAATTAAGATGTAATATGAA+AGG | - | chr5_4:29129966-29129985 | Msa0847310:CDS | 15.0% |
| !!! | ATTTAGTTTTCATATATAGT+AGG | + | chr5_4:29130046-29130065 | None:intergenic | 15.0% |
| !! | AAAAAAGTTTGTAATTACTA+AGG | - | chr5_4:29130072-29130091 | Msa0847310:intron | 15.0% |
| !!! | CATTTGCTATTTATTTATTT+AGG | - | chr5_4:29130208-29130227 | Msa0847310:intron | 15.0% |
| !!! | AACAAAATTTTTTCTTTACA+GGG | + | chr5_4:29131016-29131035 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTTTTCTTTAC+AGG | + | chr5_4:29131017-29131036 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr5_4:29131222-29131241 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr5_4:29131221-29131240 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAATATTTTGC+AGG | - | chr5_4:29131119-29131138 | Msa0847310:intron | 15.0% |
| !!! | AAAAAACAAAATATTTTGCA+GGG | - | chr5_4:29131120-29131139 | Msa0847310:intron | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | - | chr5_4:29131221-29131240 | Msa0847310:intron | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | - | chr5_4:29131222-29131241 | Msa0847310:intron | 15.0% |
| !! | ATCTGAATAAATGAAAAAAA+TGG | - | chr5_4:29132168-29132187 | Msa0847310:intron | 15.0% |
| !! | TCTGAATAAATGAAAAAAAT+GGG | - | chr5_4:29132169-29132188 | Msa0847310:intron | 15.0% |
| !!! | ACTTTTGAATTTAATAAAGA+TGG | - | chr5_4:29132709-29132728 | Msa0847310:intron | 15.0% |
| !! | ATTGAAATTTGAATGAAATA+GGG | + | chr5_4:29132762-29132781 | Msa0847320:intron | 15.0% |
| !! | AATTGAAATTTGAATGAAAT+AGG | + | chr5_4:29132763-29132782 | Msa0847320:intron | 15.0% |
| !!! | TATTTATTTTTACAAGTCTA+CGG | - | chr5_4:29133950-29133969 | Msa0847310:intron | 15.0% |
| !! | CATAGAAAATATAAAAAAAG+TGG | - | chr5_4:29134039-29134058 | Msa0847310:intron | 15.0% |
| !!! | TTAGTTTTTTATTATGATAG+AGG | - | chr5_4:29134202-29134221 | Msa0847310:CDS | 15.0% |
| !! | AAAATGACAATTAAAAAGAG+AGG | + | chr5_4:29129744-29129763 | None:intergenic | 20.0% |
| !! | AAATTGAAGATCATCTAAAA+GGG | + | chr5_4:29129858-29129877 | None:intergenic | 20.0% |
| !! | AAGTATATTCACAAAGAATT+TGG | - | chr5_4:29130272-29130291 | Msa0847310:intron | 20.0% |
| !!! | TTTCAAAAACAAAATTTTGC+AGG | - | chr5_4:29131088-29131107 | Msa0847310:intron | 20.0% |
| !!! | TTCAAAAACAAAATTTTGCA+GGG | - | chr5_4:29131089-29131108 | Msa0847310:intron | 20.0% |
| !!! | TAATATTACTTTTGACACTA+GGG | + | chr5_4:29131979-29131998 | Msa0847320:intron | 20.0% |
| !!! | TTAATATTACTTTTGACACT+AGG | + | chr5_4:29131980-29131999 | Msa0847320:intron | 20.0% |
| !!! | ATAAACTTTAAAGGGATTAT+AGG | + | chr5_4:29132007-29132026 | Msa0847320:intron | 20.0% |
| !! | CTCACTAAATAAACTTTAAA+GGG | + | chr5_4:29132015-29132034 | Msa0847320:intron | 20.0% |
| !!! | CTTTAAAGTTTATTTAGTGA+GGG | - | chr5_4:29132014-29132033 | Msa0847310:intron | 20.0% |
| !! | TATGATTAATGGTTATAACT+GGG | + | chr5_4:29132046-29132065 | Msa0847320:intron | 20.0% |
| !! | TTATAACCATTAATCATACA+TGG | - | chr5_4:29132048-29132067 | Msa0847310:intron | 20.0% |
| !! | AATAAATGAAAAAAATGGGA+AGG | - | chr5_4:29132173-29132192 | Msa0847310:intron | 20.0% |
| !! | ATAAATGAAAAAAATGGGAA+GGG | - | chr5_4:29132174-29132193 | Msa0847310:intron | 20.0% |
| !! | AGATTCAGATTCATATTAAA+TGG | - | chr5_4:29132221-29132240 | Msa0847310:intron | 20.0% |
| !! | ATTCAATGATTTCATTCTTT+AGG | + | chr5_4:29132287-29132306 | Msa0847320:intron | 20.0% |
| !! | CATGATATAAAATTGTATAC+CGG | - | chr5_4:29133290-29133309 | Msa0847310:intron | 20.0% |
| !!! | ATATCTTATTTGCTATATTC+TGG | - | chr5_4:29133381-29133400 | Msa0847310:intron | 20.0% |
| !! | AGAAAACATTGATAGAATAT+TGG | + | chr5_4:29133443-29133462 | None:intergenic | 20.0% |
| !! | TTCATTGAAATTAAAACACA+AGG | + | chr5_4:29133702-29133721 | None:intergenic | 20.0% |
| !!! | TTGTGTTTTAATTTCAATGA+AGG | - | chr5_4:29133701-29133720 | Msa0847310:intron | 20.0% |
| !!! | TGTGTTTTAATTTCAATGAA+GGG | - | chr5_4:29133702-29133721 | Msa0847310:intron | 20.0% |
| !! | CTTATGGAGAAATATTATAT+TGG | - | chr5_4:29133779-29133798 | Msa0847310:intron | 20.0% |
| !!! | ATTCTTTTTTAAATTGTTGC+TGG | - | chr5_4:29133976-29133995 | Msa0847310:intron | 20.0% |
| !! | AAAATGATTAAACATGTTAC+TGG | - | chr5_4:29134136-29134155 | Msa0847310:CDS | 20.0% |
| ! | AAAGAAGAGATTGATGAAAA+AGG | + | chr5_4:29129688-29129707 | None:intergenic | 25.0% |
| ! | ATTGATGTTTCGTTATAAGT+AGG | - | chr5_4:29129778-29129797 | Msa0847310:exon | 25.0% |
| ! | TAATCATGATCCAATATTGT+TGG | - | chr5_4:29129821-29129840 | Msa0847310:CDS | 25.0% |
| ! | CAAATTGAAGATCATCTAAA+AGG | + | chr5_4:29129859-29129878 | None:intergenic | 25.0% |
| ! | TTTAGATGATCTTCAATTTG+AGG | - | chr5_4:29129859-29129878 | Msa0847310:CDS | 25.0% |
| ! | CAAACTTCTCCTATATAAAA+GGG | + | chr5_4:29130672-29130691 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTAAAATAGTCCC+TGG | - | chr5_4:29131056-29131075 | Msa0847310:intron | 25.0% |
| ! | TATGCAAATCATCACAAAAA+TGG | - | chr5_4:29131183-29131202 | Msa0847310:intron | 25.0% |
| ! | ATGCAAATCATCACAAAAAT+GGG | - | chr5_4:29131184-29131203 | Msa0847310:intron | 25.0% |
| !!! | AAAACCATATTTTAGCCTTT+TGG | - | chr5_4:29131307-29131326 | Msa0847310:intron | 25.0% |
| ! | TTATGAAAACTATAGCCAAA+AGG | + | chr5_4:29131325-29131344 | None:intergenic | 25.0% |
| !! | TGGCTATAGTTTTCATAATT+AGG | - | chr5_4:29131327-29131346 | Msa0847310:intron | 25.0% |
| !! | TAGTTTTCATAATTAGGCTA+TGG | - | chr5_4:29131333-29131352 | Msa0847310:intron | 25.0% |
| ! | CAACTTCTTGTTCATTTATA+AGG | + | chr5_4:29131368-29131387 | None:intergenic | 25.0% |
| ! | TTCGGAAAATGAATATTTGT+TGG | - | chr5_4:29131586-29131605 | Msa0847310:intron | 25.0% |
| ! | TTAGATTCTAAGTAAAGTTG+TGG | - | chr5_4:29131910-29131929 | Msa0847310:intron | 25.0% |
| ! | CCTCACTAAATAAACTTTAA+AGG | + | chr5_4:29132016-29132035 | Msa0847320:intron | 25.0% |
| !!! | CCTTTAAAGTTTATTTAGTG+AGG | - | chr5_4:29132013-29132032 | Msa0847310:intron | 25.0% |
| ! | ATGATTAATGGTTATAACTG+GGG | + | chr5_4:29132045-29132064 | Msa0847320:intron | 25.0% |
| ! | GTATGATTAATGGTTATAAC+TGG | + | chr5_4:29132047-29132066 | Msa0847320:intron | 25.0% |
| ! | ATAATGCCATGTATGATTAA+TGG | + | chr5_4:29132057-29132076 | Msa0847320:intron | 25.0% |
| !! | ACTGCAAACTTTACATTTTT+AGG | + | chr5_4:29132135-29132154 | Msa0847320:intron | 25.0% |
| ! | GGTGAAATGAATGAATAAAA+TGG | - | chr5_4:29132242-29132261 | Msa0847310:intron | 25.0% |
| ! | AAAATGGTAAAACTGAATGA+AGG | - | chr5_4:29132258-29132277 | Msa0847310:intron | 25.0% |
| ! | TTAAAGGTCTTTAAACGAAA+GGG | - | chr5_4:29132445-29132464 | Msa0847310:intron | 25.0% |
| ! | TGGTCAAAAATTATTGTATC+AGG | - | chr5_4:29132580-29132599 | Msa0847310:intron | 25.0% |
| ! | AATTTAATAAAGATGGTGCA+CGG | - | chr5_4:29132716-29132735 | Msa0847310:intron | 25.0% |
| !!! | GAAAAGCTTTTAAGACATTT+AGG | - | chr5_4:29133203-29133222 | Msa0847310:intron | 25.0% |
| !! | GCAATAGACACAAATTTTAA+TGG | - | chr5_4:29133225-29133244 | Msa0847310:intron | 25.0% |
| ! | ATATGATGTGACACAATATT+TGG | - | chr5_4:29133543-29133562 | Msa0847310:intron | 25.0% |
| !!! | CATATATTTTTGTTACCCTA+TGG | - | chr5_4:29133617-29133636 | Msa0847310:intron | 25.0% |
| !!! | TTGTTGGTTTCTTATACTTA+CGG | - | chr5_4:29133918-29133937 | Msa0847310:intron | 25.0% |
| ! | TTATTATGATAGAGGAACTT+TGG | - | chr5_4:29134210-29134229 | Msa0847310:CDS | 25.0% |
| CAGAAAATAGCCAACAATAT+TGG | + | chr5_4:29129834-29129853 | None:intergenic | 30.0% | |
| ! | TAGATTTGGTAGCTTTCTTA+GGG | - | chr5_4:29129903-29129922 | Msa0847310:CDS | 30.0% |
| !! | TCATGTTTTTGACACTGTTA+TGG | + | chr5_4:29130007-29130026 | None:intergenic | 30.0% |
| ! | ATGAACACTTTTGTTGAGTT+GGG | + | chr5_4:29130185-29130204 | None:intergenic | 30.0% |
| ! | AATGAACACTTTTGTTGAGT+TGG | + | chr5_4:29130186-29130205 | None:intergenic | 30.0% |
| TACAGACTTAAAAGACATTG+TGG | - | chr5_4:29130244-29130263 | Msa0847310:intron | 30.0% | |
| TAGAAAACTCTAGACACAAT+TGG | + | chr5_4:29130351-29130370 | None:intergenic | 30.0% | |
| ! | TTTTCTAAGTTCCCACAATT+TGG | - | chr5_4:29130372-29130391 | Msa0847310:intron | 30.0% |
| AAAAGGAACATCCAAATTGT+GGG | + | chr5_4:29130386-29130405 | None:intergenic | 30.0% | |
| AAAAAAAAACCCAACCTACA+TGG | + | chr5_4:29130446-29130465 | None:intergenic | 30.0% | |
| TACTACATCTTGTATTTGCT+AGG | - | chr5_4:29130492-29130511 | Msa0847310:intron | 30.0% | |
| ! | ACTACATCTTGTATTTGCTA+GGG | - | chr5_4:29130493-29130512 | Msa0847310:intron | 30.0% |
| !! | TTTCTAGCTAACCTAATTCA+TGG | + | chr5_4:29130649-29130668 | None:intergenic | 30.0% |
| ! | AGCTAGAAACCCTTTTATAT+AGG | - | chr5_4:29130660-29130679 | Msa0847310:intron | 30.0% |
| CCAAACTTCTCCTATATAAA+AGG | + | chr5_4:29130673-29130692 | None:intergenic | 30.0% | |
| ! | CCTTTTATATAGGAGAAGTT+TGG | - | chr5_4:29130670-29130689 | Msa0847310:intron | 30.0% |
| ATCTTGCTCTATAAGTTTAG+AGG | - | chr5_4:29130756-29130775 | Msa0847310:intron | 30.0% | |
| CTCTATAAGTTTAGAGGATA+CGG | - | chr5_4:29130762-29130781 | Msa0847310:intron | 30.0% | |
| ATACGGAGTAATATGGATAT+GGG | - | chr5_4:29130779-29130798 | Msa0847310:intron | 30.0% | |
| ATATAATATCACTGCAGACT+AGG | + | chr5_4:29130868-29130887 | None:intergenic | 30.0% | |
| CATTGCTATAATTCCTATGT+AGG | - | chr5_4:29130905-29130924 | Msa0847310:intron | 30.0% | |
| CTATAATTCCTATGTAGGAT+AGG | - | chr5_4:29130910-29130929 | Msa0847310:intron | 30.0% | |
| !!! | CTGTTTTGTTTTACCAGTTT+TGG | - | chr5_4:29130936-29130955 | Msa0847310:intron | 30.0% |
| !!! | TTTTTTAAAATAGTCCCTGG+AGG | - | chr5_4:29131059-29131078 | Msa0847310:intron | 30.0% |
| !!! | TTTTTAAAATAGTCCCTGGA+GGG | - | chr5_4:29131060-29131079 | Msa0847310:intron | 30.0% |
| TGCAAATCATCACAAAAATG+GGG | - | chr5_4:29131185-29131204 | Msa0847310:intron | 30.0% | |
| ATAGCCAAAAGGCTAAAATA+TGG | + | chr5_4:29131314-29131333 | None:intergenic | 30.0% | |
| TGAACAAGAAGTTGTGTTTA+TGG | - | chr5_4:29131374-29131393 | Msa0847310:intron | 30.0% | |
| AGGAATGATCTAAACTCTAA+AGG | + | chr5_4:29131565-29131584 | None:intergenic | 30.0% | |
| ! | CAAATATTCATTTTCCGAAG+AGG | + | chr5_4:29131585-29131604 | None:intergenic | 30.0% |
| ATCTGAATCAATGTCATACT+TGG | + | chr5_4:29132205-29132224 | Msa0847320:intron | 30.0% | |
| TTTCAACAAGCACAAATGAA+AGG | + | chr5_4:29132416-29132435 | Msa0847320:intron | 30.0% | |
| ! | TGTGCTTGTTGAAAAATCAT+CGG | - | chr5_4:29132422-29132441 | Msa0847310:intron | 30.0% |
| ! | GTTGAAAAATCATCGGTTAA+AGG | - | chr5_4:29132429-29132448 | Msa0847310:intron | 30.0% |
| GTTAAAGGTCTTTAAACGAA+AGG | - | chr5_4:29132444-29132463 | Msa0847310:intron | 30.0% | |
| TAAAGGTCTTTAAACGAAAG+GGG | - | chr5_4:29132446-29132465 | Msa0847310:intron | 30.0% | |
| CATGAGTTATCATATCCAAT+GGG | + | chr5_4:29132618-29132637 | Msa0847320:intron | 30.0% | |
| TCATGAGTTATCATATCCAA+TGG | + | chr5_4:29132619-29132638 | Msa0847320:intron | 30.0% | |
| ! | ATGAAATAGGGTTGTTTCAA+AGG | + | chr5_4:29132750-29132769 | Msa0847320:intron | 30.0% |
| ! | ATTTTGCAGAAAAGCAATTC+CGG | - | chr5_4:29132780-29132799 | Msa0847310:intron | 30.0% |
| CAAAATCTGCATTTCAATCT+TGG | - | chr5_4:29132839-29132858 | Msa0847310:intron | 30.0% | |
| TGTGTTCAGTTTCAGAAAAT+AGG | - | chr5_4:29132862-29132881 | Msa0847310:intron | 30.0% | |
| GTGTTCAGTTTCAGAAAATA+GGG | - | chr5_4:29132863-29132882 | Msa0847310:intron | 30.0% | |
| TGTTCAGTTTCAGAAAATAG+GGG | - | chr5_4:29132864-29132883 | Msa0847310:intron | 30.0% | |
| CACAATTTAGTACAAAGTGT+TGG | + | chr5_4:29132934-29132953 | Msa0847320:CDS | 30.0% | |
| ! | TATGCTAGAAATCTAAAGCT+TGG | - | chr5_4:29133079-29133098 | Msa0847310:intron | 30.0% |
| !! | ACTACTTTTCAATGCTGTTT+TGG | - | chr5_4:29133316-29133335 | Msa0847310:intron | 30.0% |
| ! | CTGATATGTTGTAACTTGTA+AGG | - | chr5_4:29133408-29133427 | Msa0847310:intron | 30.0% |
| GTAACAAATAGAGAAGCAAA+GGG | + | chr5_4:29133495-29133514 | None:intergenic | 30.0% | |
| TGTAACAAATAGAGAAGCAA+AGG | + | chr5_4:29133496-29133515 | None:intergenic | 30.0% | |
| ! | AAACCTTTCTTGGTGTAAAT+TGG | + | chr5_4:29133824-29133843 | None:intergenic | 30.0% |
| ! | CTTTTCAGAAAAACCTTTCT+TGG | + | chr5_4:29133834-29133853 | None:intergenic | 30.0% |
| ATTGAAGCATAATGTTGCAT+TGG | - | chr5_4:29134101-29134120 | Msa0847310:CDS | 30.0% | |
| !! | TATGTTGAGCTTTGAATTCC+TGG | + | chr5_4:29129486-29129505 | None:intergenic | 35.0% |
| TTCCTCTTTCAAAACATCCT+TGG | - | chr5_4:29129547-29129566 | Msa0847310:three_prime_UTR | 35.0% | |
| AATGGTGTAGAAATTCGAGA+GGG | + | chr5_4:29129602-29129621 | None:intergenic | 35.0% | |
| AATATAGAAAGACCCAGATG+GGG | + | chr5_4:29129711-29129730 | None:intergenic | 35.0% | |
| CAATATAGAAAGACCCAGAT+GGG | + | chr5_4:29129712-29129731 | None:intergenic | 35.0% | |
| ! | CTAGATTTGGTAGCTTTCTT+AGG | - | chr5_4:29129902-29129921 | Msa0847310:CDS | 35.0% |
| CAAAAGGAACATCCAAATTG+TGG | + | chr5_4:29130387-29130406 | None:intergenic | 35.0% | |
| !! | AAAGAGGCATTGTGAATAGA+AGG | + | chr5_4:29130418-29130437 | None:intergenic | 35.0% |
| ! | TGGTGCTAAATCCATGAATT+AGG | - | chr5_4:29130635-29130654 | Msa0847310:intron | 35.0% |
| CAAGCAAACAAGACTTAAGA+AGG | + | chr5_4:29130707-29130726 | None:intergenic | 35.0% | |
| TTAGAGGATACGGAGTAATA+TGG | - | chr5_4:29130772-29130791 | Msa0847310:intron | 35.0% | |
| GATACGGAGTAATATGGATA+TGG | - | chr5_4:29130778-29130797 | Msa0847310:intron | 35.0% | |
| TAGCAATGAACAACAAAACG+TGG | + | chr5_4:29130893-29130912 | None:intergenic | 35.0% | |
| AACAGTATCCTATCCTACAT+AGG | + | chr5_4:29130921-29130940 | None:intergenic | 35.0% | |
| !!! | TTGTTTTACCAGTTTTGGCT+AGG | - | chr5_4:29130941-29130960 | Msa0847310:intron | 35.0% |
| TAATTTAGCCTAGCCAAAAC+TGG | + | chr5_4:29130952-29130971 | None:intergenic | 35.0% | |
| !!! | GTTTTGGCTAGGCTAAATTA+TGG | - | chr5_4:29130952-29130971 | Msa0847310:intron | 35.0% |
| TACAGGGACTAAAACCAAAA+CGG | + | chr5_4:29131266-29131285 | None:intergenic | 35.0% | |
| !! | TTTTGAAAATAGTCCCTCCA+GGG | + | chr5_4:29131076-29131095 | None:intergenic | 35.0% |
| !! | TTTTTGAAAATAGTCCCTCC+AGG | + | chr5_4:29131077-29131096 | None:intergenic | 35.0% |
| AGGGACCAAAAACTACAAAA+TGG | - | chr5_4:29131139-29131158 | Msa0847310:intron | 35.0% | |
| GGGACCAAAAACTACAAAAT+GGG | - | chr5_4:29131140-29131159 | Msa0847310:intron | 35.0% | |
| ! | TGGACCCATTTTGTAGTTTT+TGG | + | chr5_4:29131147-29131166 | None:intergenic | 35.0% |
| ! | TTTGTGATGATTTGCATACG+TGG | + | chr5_4:29131181-29131200 | None:intergenic | 35.0% |
| CATGAAGGCAAATATTTCTC+AGG | + | chr5_4:29131459-29131478 | None:intergenic | 35.0% | |
| GGAACTAACCTAAAAAGCAA+CGG | + | chr5_4:29131483-29131502 | None:intergenic | 35.0% | |
| GAGTTTAGATCATTCCTCTT+CGG | - | chr5_4:29131568-29131587 | Msa0847310:intron | 35.0% | |
| !!! | TTGGGTTTTGAGACATTTAG+CGG | + | chr5_4:29131640-29131659 | None:intergenic | 35.0% |
| !!! | GTTGTCAGGATTTAGCTTTT+GGG | + | chr5_4:29131658-29131677 | None:intergenic | 35.0% |
| !!! | AGTTGTCAGGATTTAGCTTT+TGG | + | chr5_4:29131659-29131678 | None:intergenic | 35.0% |
| AGTTTACTGAGTTAGGTCTA+TGG | + | chr5_4:29131947-29131966 | Msa0847320:CDS | 35.0% | |
| GCTTACAAGTTTACTGAGTT+AGG | + | chr5_4:29131954-29131973 | Msa0847320:CDS | 35.0% | |
| !! | TATTACTTTTGACACTAGGG+AGG | + | chr5_4:29131976-29131995 | Msa0847320:intron | 35.0% |
| AATGAAAAAAATGGGAAGGG+TGG | - | chr5_4:29132177-29132196 | Msa0847310:intron | 35.0% | |
| !! | AAAGGTGGGTTAATAAGTGA+AGG | - | chr5_4:29132351-29132370 | Msa0847310:intron | 35.0% |
| TTGGACAATAGAAGGAGATT+TGG | - | chr5_4:29132374-29132393 | Msa0847310:intron | 35.0% | |
| AAGACCTTGAGAAAAAACCT+CGG | + | chr5_4:29132524-29132543 | Msa0847320:intron | 35.0% | |
| ! | TTTTTCTCAAGGTCTTCACT+TGG | - | chr5_4:29132528-29132547 | Msa0847310:intron | 35.0% |
| ! | TTTTCTCAAGGTCTTCACTT+GGG | - | chr5_4:29132529-29132548 | Msa0847310:intron | 35.0% |
| ! | CGTTTCATTTGTTCCTTTTG+AGG | + | chr5_4:29132560-29132579 | Msa0847320:intron | 35.0% |
| CAAAAGGAACAAATGAAACG+TGG | - | chr5_4:29132560-29132579 | Msa0847310:intron | 35.0% | |
| TATCCAATGGGAGGAAAAAA+AGG | + | chr5_4:29132606-29132625 | Msa0847320:intron | 35.0% | |
| ! | TTTTGCAGAAAAGCAATTCC+GGG | - | chr5_4:29132781-29132800 | Msa0847310:intron | 35.0% |
| ! | GATTTTGCAAGTGAATGACA+TGG | + | chr5_4:29132826-29132845 | Msa0847320:intron | 35.0% |
| !! | CAGGTGCTATTTAACAACAT+TGG | - | chr5_4:29133007-29133026 | Msa0847310:intron | 35.0% |
| CATATTCATAGCTTCACTGA+GGG | - | chr5_4:29133036-29133055 | Msa0847310:intron | 35.0% | |
| !!! | TGGGTTATGTTTTAGCTGAT+GGG | - | chr5_4:29133110-29133129 | Msa0847310:intron | 35.0% |
| !!! | AATGCTGTTTTGGTATTGCT+TGG | - | chr5_4:29133326-29133345 | Msa0847310:intron | 35.0% |
| GATTAGTAATGCAGTCCATA+GGG | + | chr5_4:29133635-29133654 | None:intergenic | 35.0% | |
| TGATTAGTAATGCAGTCCAT+AGG | + | chr5_4:29133636-29133655 | None:intergenic | 35.0% | |
| ! | ATGGACTGCATTACTAATCA+TGG | - | chr5_4:29133636-29133655 | Msa0847310:intron | 35.0% |
| !! | AACAGAGGATTTTGAAGATG+CGG | - | chr5_4:29133733-29133752 | Msa0847310:intron | 35.0% |
| ! | CAAAAGTGCAAGAGAACTTA+TGG | - | chr5_4:29133763-29133782 | Msa0847310:intron | 35.0% |
| TCTCCAATTTACACCAAGAA+AGG | - | chr5_4:29133818-29133837 | Msa0847310:intron | 35.0% | |
| GCTATGGAGAAACTCAAATA+TGG | + | chr5_4:29133878-29133897 | None:intergenic | 35.0% | |
| TTATGATAGAGGAACTTTGG+TGG | - | chr5_4:29134213-29134232 | Msa0847310:CDS | 35.0% | |
| TCATGAGTCAACAAACCACA+CGG | + | chr5_4:29129441-29129460 | None:intergenic | 40.0% | |
| ATGAACCTGAAAGAAGACCA+AGG | - | chr5_4:29129457-29129476 | Msa0847310:three_prime_UTR | 40.0% | |
| CTTTGAATTCCTGGTATCCT+TGG | + | chr5_4:29129477-29129496 | None:intergenic | 40.0% | |
| !!! | GTCCAAGGATGTTTTGAAAG+AGG | + | chr5_4:29129552-29129571 | None:intergenic | 40.0% |
| GCATGTTTGTGAGTTGTGAT+TGG | + | chr5_4:29129576-29129595 | None:intergenic | 40.0% | |
| GAATGGTGTAGAAATTCGAG+AGG | + | chr5_4:29129603-29129622 | None:intergenic | 40.0% | |
| GTGGATGGATACATCTTGAA+TGG | + | chr5_4:29129620-29129639 | None:intergenic | 40.0% | |
| !!! | ATCGTCTTTGGTTTTGTGGA+TGG | + | chr5_4:29129635-29129654 | None:intergenic | 40.0% |
| !!! | AGCAATCGTCTTTGGTTTTG+TGG | + | chr5_4:29129639-29129658 | None:intergenic | 40.0% |
| ACAAAACCAAAGACGATTGC+TGG | - | chr5_4:29129638-29129657 | Msa0847310:three_prime_UTR | 40.0% | |
| AATCTCTTCTTTCCCCATCT+GGG | - | chr5_4:29129696-29129715 | Msa0847310:three_prime_UTR | 40.0% | |
| GCAATATAGAAAGACCCAGA+TGG | + | chr5_4:29129713-29129732 | None:intergenic | 40.0% | |
| GTCACTTGAACAAGATGTAG+TGG | - | chr5_4:29130101-29130120 | Msa0847310:intron | 40.0% | |
| ATAGAAGGACACGAAGCAAA+AGG | + | chr5_4:29130403-29130422 | None:intergenic | 40.0% | |
| CATAGGAGAGTTGCCATAAT+TGG | + | chr5_4:29130525-29130544 | None:intergenic | 40.0% | |
| TCAGTTGAGAACCAGATCAT+AGG | + | chr5_4:29130542-29130561 | None:intergenic | 40.0% | |
| GGTTCTCAACTGAGAACTTT+AGG | - | chr5_4:29130549-29130568 | Msa0847310:intron | 40.0% | |
| CTCAACTGAGAACTTTAGGT+TGG | - | chr5_4:29130553-29130572 | Msa0847310:intron | 40.0% | |
| !! | TTAGGTTGGACCTAGTAAGT+AGG | - | chr5_4:29130567-29130586 | Msa0847310:intron | 40.0% |
| ! | TAGGTTGGACCTAGTAAGTA+GGG | - | chr5_4:29130568-29130587 | Msa0847310:intron | 40.0% |
| ! | GACAGTGCTTAGTATTTCTG+TGG | - | chr5_4:29130615-29130634 | Msa0847310:intron | 40.0% |
| CAAGACTTAAGAAGGAAGCA+AGG | + | chr5_4:29130699-29130718 | None:intergenic | 40.0% | |
| CTTATAGAGCAAGATAGAGC+CGG | + | chr5_4:29130751-29130770 | None:intergenic | 40.0% | |
| AAATTGGAGTAAACCTGGAC+TGG | + | chr5_4:29130819-29130838 | None:intergenic | 40.0% | |
| ! | GTCCAGGTTTACTCCAATTT+TGG | - | chr5_4:29130819-29130838 | Msa0847310:intron | 40.0% |
| AGCCAAAATTGGAGTAAACC+TGG | + | chr5_4:29130824-29130843 | None:intergenic | 40.0% | |
| GTTCAAAGAGCAGCCAAAAT+TGG | + | chr5_4:29130835-29130854 | None:intergenic | 40.0% | |
| ACAGGGACTAAAACCAAAAC+GGG | + | chr5_4:29131267-29131286 | None:intergenic | 40.0% | |
| ATCATCACAAAAATGGGGTC+AGG | - | chr5_4:29131190-29131209 | Msa0847310:intron | 40.0% | |
| TCATCACAAAAATGGGGTCA+GGG | - | chr5_4:29131191-29131210 | Msa0847310:intron | 40.0% | |
| CAAAACGAGGCATATTTGCA+GGG | - | chr5_4:29131281-29131300 | Msa0847310:intron | 40.0% | |
| AGTTGTGTTTATGGCCTGTT+TGG | - | chr5_4:29131383-29131402 | Msa0847310:intron | 40.0% | |
| TGTTTATGGCCTGTTTGGTA+GGG | - | chr5_4:29131388-29131407 | Msa0847310:intron | 40.0% | |
| ATATATGAGCCCTACCAAAC+AGG | + | chr5_4:29131400-29131419 | None:intergenic | 40.0% | |
| TTGGTAGGGCTCATATATGA+TGG | - | chr5_4:29131402-29131421 | Msa0847310:intron | 40.0% | |
| TGGTAGGGCTCATATATGAT+GGG | - | chr5_4:29131403-29131422 | Msa0847310:intron | 40.0% | |
| !! | TATGATGGGCGGCTTAAAAA+AGG | - | chr5_4:29131417-29131436 | Msa0847310:intron | 40.0% |
| !! | ATGATGGGCGGCTTAAAAAA+GGG | - | chr5_4:29131418-29131437 | Msa0847310:intron | 40.0% |
| GAAGGCAAATATTTCTCAGG+TGG | + | chr5_4:29131456-29131475 | None:intergenic | 40.0% | |
| CTAAAAAGCAACGGACATGA+AGG | + | chr5_4:29131474-29131493 | None:intergenic | 40.0% | |
| !!! | CTTCATGTCCGTTGCTTTTT+AGG | - | chr5_4:29131472-29131491 | Msa0847310:intron | 40.0% |
| ! | TAAACTCTAAAGGCTGTCTG+TGG | + | chr5_4:29131555-29131574 | None:intergenic | 40.0% |
| TCCAATGCTGAAGAAGTCAA+CGG | + | chr5_4:29131851-29131870 | Msa0847320:CDS | 40.0% | |
| GTTTGACAACCATGACTGTT+GGG | + | chr5_4:29131889-29131908 | Msa0847320:CDS | 40.0% | |
| AGTTTGACAACCATGACTGT+TGG | + | chr5_4:29131890-29131909 | Msa0847320:CDS | 40.0% | |
| TCTAAGTAAAGTTGTGGCAG+TGG | - | chr5_4:29131916-29131935 | Msa0847310:intron | 40.0% | |
| ATACATGGCATTATCCCCTA+TGG | - | chr5_4:29132063-29132082 | Msa0847310:intron | 40.0% | |
| TACATGGCATTATCCCCTAT+GGG | - | chr5_4:29132064-29132083 | Msa0847310:intron | 40.0% | |
| ! | CAACATGTTGCTTCGTACAA+AGG | - | chr5_4:29132333-29132352 | Msa0847310:intron | 40.0% |
| ! | ATGTTGCTTCGTACAAAGGT+GGG | - | chr5_4:29132337-29132356 | Msa0847310:intron | 40.0% |
| ! | GTGGGTTAATAAGTGAAGGT+TGG | - | chr5_4:29132355-29132374 | Msa0847310:intron | 40.0% |
| AGTGAAGGTTGGACAATAGA+AGG | - | chr5_4:29132366-29132385 | Msa0847310:intron | 40.0% | |
| GACAATAGAAGGAGATTTGG+TGG | - | chr5_4:29132377-29132396 | Msa0847310:intron | 40.0% | |
| GTTTAAGTCATAGGGAACCT+CGG | - | chr5_4:29132473-29132492 | Msa0847310:intron | 40.0% | |
| GAGTTATCATATCCAATGGG+AGG | + | chr5_4:29132615-29132634 | Msa0847320:intron | 40.0% | |
| TATCCAGAGACGCATAAACA+TGG | - | chr5_4:29132670-29132689 | Msa0847310:intron | 40.0% | |
| GCTAAAGAATGAACACAACC+CGG | + | chr5_4:29132802-29132821 | Msa0847320:intron | 40.0% | |
| ACTATAGCACTGTATCGTAG+TGG | + | chr5_4:29132902-29132921 | Msa0847320:CDS | 40.0% | |
| CTACGCTAAAACACTGTTAC+AGG | - | chr5_4:29132988-29133007 | Msa0847310:intron | 40.0% | |
| GCATATTCATAGCTTCACTG+AGG | - | chr5_4:29133035-29133054 | Msa0847310:intron | 40.0% | |
| !!! | CTGGGTTATGTTTTAGCTGA+TGG | - | chr5_4:29133109-29133128 | Msa0847310:intron | 40.0% |
| GCAATGCTTATGCTTGGTAA+TGG | - | chr5_4:29133132-29133151 | Msa0847310:intron | 40.0% | |
| TGAATTGCAGCTATGAGCAT+TGG | - | chr5_4:29133160-29133179 | Msa0847310:intron | 40.0% | |
| ! | AGCATTGAAAAGTAGTGCAC+CGG | + | chr5_4:29133312-29133331 | None:intergenic | 40.0% |
| !! | GTTTTGGTATTGCTTGGTTC+TGG | - | chr5_4:29133332-29133351 | Msa0847310:intron | 40.0% |
| !!! | CTTTTTTCATTTGCCAACGC+AGG | - | chr5_4:29133519-29133538 | Msa0847310:intron | 40.0% |
| CAATATTTGGATGACCATCC+TGG | - | chr5_4:29133556-29133575 | Msa0847310:intron | 40.0% | |
| !! | ACAGAGGATTTTGAAGATGC+GGG | - | chr5_4:29133734-29133753 | Msa0847310:intron | 40.0% |
| TGTTGGAGTGGTAGTTAGTT+TGG | - | chr5_4:29134270-29134289 | Msa0847310:exon | 40.0% | |
| ! | GGTATCCTTGGTCTTCTTTC+AGG | + | chr5_4:29129465-29129484 | None:intergenic | 45.0% |
| GAAAGAAGACCAAGGATACC+AGG | - | chr5_4:29129465-29129484 | Msa0847310:three_prime_UTR | 45.0% | |
| !!! | CTGCACGGAGATGTTTTGAT+TGG | + | chr5_4:29129523-29129542 | None:intergenic | 45.0% |
| TGAAAGAGGAAGAGTCTGCA+CGG | + | chr5_4:29129538-29129557 | None:intergenic | 45.0% | |
| TGAGTTGTGATTGGAGTCCA+AGG | + | chr5_4:29129567-29129586 | None:intergenic | 45.0% | |
| GTGTAGAAATTCGAGAGGGT+CGG | + | chr5_4:29129598-29129617 | None:intergenic | 45.0% | |
| GATGATCCAGCAATCGTCTT+TGG | + | chr5_4:29129647-29129666 | None:intergenic | 45.0% | |
| CAATCTCTTCTTTCCCCATC+TGG | - | chr5_4:29129695-29129714 | Msa0847310:three_prime_UTR | 45.0% | |
| ! | CACTGTCACTGGACTAGATT+TGG | - | chr5_4:29129889-29129908 | Msa0847310:CDS | 45.0% |
| ! | ACAAGATGTAGTGGAAGACG+TGG | - | chr5_4:29130110-29130129 | Msa0847310:intron | 45.0% |
| AACCTACATGGTCTGCAAAG+AGG | + | chr5_4:29130434-29130453 | None:intergenic | 45.0% | |
| TCTTTGCAGACCATGTAGGT+TGG | - | chr5_4:29130433-29130452 | Msa0847310:intron | 45.0% | |
| CTTTGCAGACCATGTAGGTT+GGG | - | chr5_4:29130434-29130453 | Msa0847310:intron | 45.0% | |
| TGTAGTAACGATGTCGTGAG+AGG | + | chr5_4:29130479-29130498 | None:intergenic | 45.0% | |
| GGAGAGTTGCCATAATTGGA+GGG | + | chr5_4:29130521-29130540 | None:intergenic | 45.0% | |
| AGGAGAGTTGCCATAATTGG+AGG | + | chr5_4:29130522-29130541 | None:intergenic | 45.0% | |
| ATGGCAACTCTCCTATGATC+TGG | - | chr5_4:29130528-29130547 | Msa0847310:intron | 45.0% | |
| ! | TAAACCTGGACTGGATGGTT+GGG | + | chr5_4:29130810-29130829 | None:intergenic | 45.0% |
| CAAAACGGGGCATATTTGCA+GGG | + | chr5_4:29130985-29131004 | None:intergenic | 45.0% | |
| CAGGGACTAAAACCAAAACG+GGG | + | chr5_4:29131268-29131287 | None:intergenic | 45.0% | |
| CAGGGACTAAAACCAAAACG+AGG | - | chr5_4:29131268-29131287 | Msa0847310:intron | 45.0% | |
| ! | CCTGCAAATATGCCTCGTTT+TGG | + | chr5_4:29131283-29131302 | None:intergenic | 45.0% |
| CCAAAACGAGGCATATTTGC+AGG | - | chr5_4:29131280-29131299 | Msa0847310:intron | 45.0% | |
| GTGTTTATGGCCTGTTTGGT+AGG | - | chr5_4:29131387-29131406 | Msa0847310:intron | 45.0% | |
| ! | TAGGGCTCATATATGATGGG+CGG | - | chr5_4:29131406-29131425 | Msa0847310:intron | 45.0% |
| GGAGAGGAATAGAGACTTGA+GGG | + | chr5_4:29131513-29131532 | None:intergenic | 45.0% | |
| GGTTGTGTTTGTGAGTTGTC+AGG | + | chr5_4:29131672-29131691 | None:intergenic | 45.0% | |
| TGCCTCACCAATGTTGTCTT+CGG | - | chr5_4:29131705-29131724 | Msa0847310:intron | 45.0% | |
| CATGTGTATTGTCTCAACGG+TGG | + | chr5_4:29131761-29131780 | None:intergenic | 45.0% | |
| GGGCATGTGTATTGTCTCAA+CGG | + | chr5_4:29131764-29131783 | None:intergenic | 45.0% | |
| TTTCAGAGGCAATGAGGATG+TGG | + | chr5_4:29131789-29131808 | None:intergenic | 45.0% | |
| ! | AATGAGGACAGCGTTTTCAG+AGG | + | chr5_4:29131803-29131822 | None:intergenic | 45.0% |
| !! | TGGAAGCGATGATGGAAATG+AGG | + | chr5_4:29131819-29131838 | None:intergenic | 45.0% |
| !! | TCCGTTGACTTCTTCAGCAT+TGG | - | chr5_4:29131847-29131866 | Msa0847310:intron | 45.0% |
| TGGTTGTTGAGAGTCCCATA+GGG | + | chr5_4:29132081-29132100 | Msa0847320:intron | 45.0% | |
| ATGGTTGTTGAGAGTCCCAT+AGG | + | chr5_4:29132082-29132101 | Msa0847320:intron | 45.0% | |
| ! | CATGTTGCTTCGTACAAAGG+TGG | - | chr5_4:29132336-29132355 | Msa0847310:intron | 45.0% |
| GTCTTTAAACGAAAGGGGAG+AGG | - | chr5_4:29132451-29132470 | Msa0847310:intron | 45.0% | |
| AGGGGAGAGGTTTAAGTCAT+AGG | - | chr5_4:29132464-29132483 | Msa0847310:intron | 45.0% | |
| GGGGAGAGGTTTAAGTCATA+GGG | - | chr5_4:29132465-29132484 | Msa0847310:intron | 45.0% | |
| ! | AACTTTTCGACACTTCACCG+AGG | + | chr5_4:29132493-29132512 | Msa0847320:intron | 45.0% |
| !!! | TCTGCCGAGGTTTTTTCTCA+AGG | - | chr5_4:29132517-29132536 | Msa0847310:intron | 45.0% |
| !!! | AGGCCTTTTTTTCCTCCCAT+TGG | - | chr5_4:29132600-29132619 | Msa0847310:intron | 45.0% |
| AGTCCATGTTTATGCGTCTC+TGG | + | chr5_4:29132676-29132695 | Msa0847320:intron | 45.0% | |
| ! | ATAGGGTTGTTTCAAAGGCC+TGG | + | chr5_4:29132745-29132764 | Msa0847320:intron | 45.0% |
| !! | TCTAAAGCTTGGTGCTGTTC+TGG | - | chr5_4:29133090-29133109 | Msa0847310:intron | 45.0% |
| !! | CTAAAGCTTGGTGCTGTTCT+GGG | - | chr5_4:29133091-29133110 | Msa0847310:intron | 45.0% |
| ! | TGATGGGCAATGCTTATGCT+TGG | - | chr5_4:29133126-29133145 | Msa0847310:intron | 45.0% |
| GTCACATCATATACCTGCGT+TGG | + | chr5_4:29133535-29133554 | None:intergenic | 45.0% | |
| TATTTGGATGACCATCCTGG+CGG | - | chr5_4:29133559-29133578 | Msa0847310:intron | 45.0% | |
| AGAATTACATCATCTCCGCC+AGG | + | chr5_4:29133577-29133596 | None:intergenic | 45.0% | |
| GATGTAATTCTCGACGCAAC+CGG | - | chr5_4:29133586-29133605 | Msa0847310:intron | 45.0% | |
| ! | GTTCTCTTGCACTTTTGCTG+TGG | + | chr5_4:29133760-29133779 | None:intergenic | 45.0% |
| AGTTTCTCCATAGCCGTAGT+TGG | - | chr5_4:29133884-29133903 | Msa0847310:intron | 45.0% | |
| AACCACTGAGATGCCAACTA+CGG | + | chr5_4:29133900-29133919 | None:intergenic | 45.0% | |
| ! | GATAGAGGAACTTTGGTGGT+TGG | - | chr5_4:29134217-29134236 | Msa0847310:CDS | 45.0% |
| !! | TTTGGTGGTTGGTCTCATTG+TGG | - | chr5_4:29134228-29134247 | Msa0847310:CDS | 45.0% |
| !! | TTGGTGGTTGGTCTCATTGT+GGG | - | chr5_4:29134229-29134248 | Msa0847310:CDS | 45.0% |
| TCTCATTGTGGGATGGTTGA+GGG | - | chr5_4:29134240-29134259 | Msa0847310:CDS | 45.0% | |
| !!! | AAATATTTTGTTTTTTAAAA+AGG | + | chr5_4:29131116-29131135 | None:intergenic | 5.0% |
| GATTGCTGGATCATCGTCGA+CGG | - | chr5_4:29129652-29129671 | Msa0847310:three_prime_UTR | 50.0% | |
| GAGGTTGTGAACACTGTCAC+TGG | - | chr5_4:29129878-29129897 | Msa0847310:CDS | 50.0% | |
| TGCCTCTTTGCAGACCATGT+AGG | - | chr5_4:29130429-29130448 | Msa0847310:intron | 50.0% | |
| GCTAGGGTTCCCTCCAATTA+TGG | - | chr5_4:29130509-29130528 | Msa0847310:intron | 50.0% | |
| ! | GACCTAGTAAGTAGGGTGCT+AGG | - | chr5_4:29130575-29130594 | Msa0847310:intron | 50.0% |
| AGCCTAGCACCCTACTTACT+AGG | + | chr5_4:29130580-29130599 | None:intergenic | 50.0% | |
| ! | GTAAACCTGGACTGGATGGT+TGG | + | chr5_4:29130811-29130830 | None:intergenic | 50.0% |
| ! | TGGAGTAAACCTGGACTGGA+TGG | + | chr5_4:29130815-29130834 | None:intergenic | 50.0% |
| ATCACTGCAGACTAGGTCGT+AGG | + | chr5_4:29130861-29130880 | None:intergenic | 50.0% | |
| CCAAAACGGGGCATATTTGC+AGG | + | chr5_4:29130986-29131005 | None:intergenic | 50.0% | |
| ! | CCTGCAAATATGCCCCGTTT+TGG | - | chr5_4:29130983-29131002 | Msa0847310:intron | 50.0% |
| CATACGTGGCACATGATGAC+TGG | + | chr5_4:29131167-29131186 | None:intergenic | 50.0% | |
| TAGAGACTTGAGGGAGAGAG+AGG | + | chr5_4:29131504-29131523 | None:intergenic | 50.0% | |
| GGGAGAGGAATAGAGACTTG+AGG | + | chr5_4:29131514-29131533 | None:intergenic | 50.0% | |
| !! | TAGGAAGGTACTAGAGGGAG+AGG | + | chr5_4:29131529-29131548 | None:intergenic | 50.0% |
| !! | GGAGGTAGGAAGGTACTAGA+GGG | + | chr5_4:29131534-29131553 | None:intergenic | 50.0% |
| !! | TGGAGGTAGGAAGGTACTAG+AGG | + | chr5_4:29131535-29131554 | None:intergenic | 50.0% |
| TAAAGGCTGTCTGTGGAGGT+AGG | + | chr5_4:29131548-29131567 | None:intergenic | 50.0% | |
| ! | ACTCTAAAGGCTGTCTGTGG+AGG | + | chr5_4:29131552-29131571 | None:intergenic | 50.0% |
| TAGCGGCAGCAAAGGATGAA+GGG | + | chr5_4:29131623-29131642 | None:intergenic | 50.0% | |
| TTAGCGGCAGCAAAGGATGA+AGG | + | chr5_4:29131624-29131643 | None:intergenic | 50.0% | |
| GAGACATTTAGCGGCAGCAA+AGG | + | chr5_4:29131631-29131650 | None:intergenic | 50.0% | |
| GTGAGGCATAGAGATGCTGA+GGG | + | chr5_4:29131693-29131712 | None:intergenic | 50.0% | |
| CTCACCAATGTTGTCTTCGG+CGG | - | chr5_4:29131708-29131727 | Msa0847310:intron | 50.0% | |
| AGTAGGCGACTGTGAAGAAG+AGG | + | chr5_4:29131734-29131753 | None:intergenic | 50.0% | |
| GTGTATTGTCTCAACGGTGG+AGG | + | chr5_4:29131758-29131777 | None:intergenic | 50.0% | |
| GAGGCAATGAGGATGTGGAT+GGG | + | chr5_4:29131784-29131803 | None:intergenic | 50.0% | |
| AGAGGCAATGAGGATGTGGA+TGG | + | chr5_4:29131785-29131804 | None:intergenic | 50.0% | |
| ! | CAGCGTTTTCAGAGGCAATG+AGG | + | chr5_4:29131795-29131814 | None:intergenic | 50.0% |
| GAAGAAGTCAACGGAGTAGG+TGG | + | chr5_4:29131842-29131861 | Msa0847320:CDS | 50.0% | |
| GCTGAAGAAGTCAACGGAGT+AGG | + | chr5_4:29131845-29131864 | Msa0847320:CDS | 50.0% | |
| ACCATGACTGTTGGGAAACG+CGG | + | chr5_4:29131881-29131900 | Msa0847320:CDS | 50.0% | |
| GGTTGTTGAGAGTCCCATAG+GGG | + | chr5_4:29132080-29132099 | Msa0847320:intron | 50.0% | |
| CACTTGGGTGAAGCCTCAAA+AGG | - | chr5_4:29132544-29132563 | Msa0847310:intron | 50.0% | |
| CTTCACTGAGGGTGAGTAGT+GGG | - | chr5_4:29133047-29133066 | Msa0847310:intron | 50.0% | |
| !! | CAGCTATGAGCATTGGACAC+CGG | - | chr5_4:29133167-29133186 | Msa0847310:intron | 50.0% |
| !! | AGCTATGAGCATTGGACACC+GGG | - | chr5_4:29133168-29133187 | Msa0847310:intron | 50.0% |
| ! | CTTTTCCTCAAACCCAACCC+CGG | + | chr5_4:29133189-29133208 | None:intergenic | 50.0% |
| GAGAAGCAAAGGGAAGTGAG+AGG | + | chr5_4:29133485-29133504 | None:intergenic | 50.0% | |
| TTACATCATCTCCGCCAGGA+TGG | + | chr5_4:29133573-29133592 | None:intergenic | 50.0% | |
| TGAAGGGAGAGATGCAACAG+AGG | - | chr5_4:29133718-29133737 | Msa0847310:intron | 50.0% | |
| TGAGATGCCAACTACGGCTA+TGG | + | chr5_4:29133894-29133913 | None:intergenic | 50.0% | |
| GTTGGCATCTCAGTGGTTGT+TGG | - | chr5_4:29133902-29133921 | Msa0847310:intron | 50.0% | |
| !! | TGGTTGGTCTCATTGTGGGA+TGG | - | chr5_4:29134233-29134252 | Msa0847310:CDS | 50.0% |
| GTCTCATTGTGGGATGGTTG+AGG | - | chr5_4:29134239-29134258 | Msa0847310:CDS | 50.0% | |
| TGGTTGAGGGTGGTGATTGT+TGG | - | chr5_4:29134253-29134272 | Msa0847310:CDS | 50.0% | |
| CTGGATCATCGTCGACGGAA+AGG | - | chr5_4:29129657-29129676 | Msa0847310:three_prime_UTR | 55.0% | |
| AGCACTGTCTGCCTAGCATC+TGG | + | chr5_4:29130604-29130623 | None:intergenic | 55.0% | |
| !! | TGCTCCTAAAGTGTCGCCTG+TGG | - | chr5_4:29130725-29130744 | Msa0847310:intron | 55.0% |
| GGTGAGGCATAGAGATGCTG+AGG | + | chr5_4:29131694-29131713 | None:intergenic | 55.0% | |
| CGCCGAAGACAACATTGGTG+AGG | + | chr5_4:29131710-29131729 | None:intergenic | 55.0% | |
| GTCTCAACGGTGGAGGAAGT+AGG | + | chr5_4:29131751-29131770 | None:intergenic | 55.0% | |
| !! | GTAGGTGGTGGAAGCGATGA+TGG | + | chr5_4:29131827-29131846 | None:intergenic | 55.0% |
| GAAGTCAACGGAGTAGGTGG+TGG | + | chr5_4:29131839-29131858 | Msa0847320:CDS | 55.0% | |
| ACTGTTGGGAAACGCGGCAT+GGG | + | chr5_4:29131875-29131894 | Msa0847320:CDS | 55.0% | |
| CGAAAAGTTGCAGTCTGCCG+AGG | - | chr5_4:29132504-29132523 | Msa0847310:intron | 55.0% | |
| AAAGATGGTGCACGGAAGCC+AGG | - | chr5_4:29132724-29132743 | Msa0847310:intron | 55.0% | |
| GCTTCACTGAGGGTGAGTAG+TGG | - | chr5_4:29133046-29133065 | Msa0847310:intron | 55.0% | |
| !! | GCTATGAGCATTGGACACCG+GGG | - | chr5_4:29133169-29133188 | Msa0847310:intron | 55.0% |
| AGCCGTAGTTGGCATCTCAG+TGG | - | chr5_4:29133895-29133914 | Msa0847310:intron | 55.0% | |
| CATTGTGGGATGGTTGAGGG+TGG | - | chr5_4:29134243-29134262 | Msa0847310:CDS | 55.0% | |
| GAGGGTGGTGATTGTTGGAG+TGG | - | chr5_4:29134258-29134277 | Msa0847310:exon | 55.0% | |
| GTGCTAGGCTGCCAGATGCT+AGG | - | chr5_4:29130590-29130609 | Msa0847310:intron | 60.0% | |
| !! | CCTAAAGTGTCGCCTGTGGC+CGG | - | chr5_4:29130729-29130748 | Msa0847310:intron | 60.0% |
| AGCAAGATAGAGCCGGCCAC+AGG | + | chr5_4:29130744-29130763 | None:intergenic | 60.0% | |
| ! | CTGGACTGGATGGTTGGGCT+CGG | + | chr5_4:29130805-29130824 | None:intergenic | 60.0% |
| GGCTGTCTGTGGAGGTAGGA+AGG | + | chr5_4:29131544-29131563 | None:intergenic | 60.0% | |
| GAGGCCGCCGAAGACAACAT+TGG | + | chr5_4:29131715-29131734 | None:intergenic | 60.0% | |
| GACTGTTGGGAAACGCGGCA+TGG | + | chr5_4:29131876-29131895 | Msa0847320:CDS | 60.0% | |
| GCCGCGTTTCCCAACAGTCA+TGG | - | chr5_4:29131877-29131896 | Msa0847310:intron | 60.0% | |
| !! | TGAGCATTGGACACCGGGGT+TGG | - | chr5_4:29133173-29133192 | Msa0847310:intron | 60.0% |
| !! | GAGCATTGGACACCGGGGTT+GGG | - | chr5_4:29133174-29133193 | Msa0847310:intron | 60.0% |
| CCGGCCACAGGCGACACTTT+AGG | + | chr5_4:29130732-29130751 | None:intergenic | 65.0% | |
| CGAGCCCAACCATCCAGTCC+AGG | - | chr5_4:29130803-29130822 | Msa0847310:intron | 65.0% | |
| GGACACCGGGGTTGGGTTTG+AGG | - | chr5_4:29133181-29133200 | Msa0847310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 29129434 | 29134298 | 29129434 | ID=Msa0847310;Name=Msa0847310 |
| chr5_4 | mRNA | 29129434 | 29134298 | 29129434 | ID=Msa0847310-mRNA-1;Parent=Msa0847310;Name=Msa0847310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=23|1|1|1|0.5|1|3|349|171 |
| chr5_4 | exon | 29129434 | 29130009 | 29129434 | ID=Msa0847310-mRNA-1:exon:10851;Parent=Msa0847310-mRNA-1 |
| chr5_4 | exon | 29130125 | 29130191 | 29130125 | ID=Msa0847310-mRNA-1:exon:10850;Parent=Msa0847310-mRNA-1 |
| chr5_4 | exon | 29134054 | 29134298 | 29134054 | ID=Msa0847310-mRNA-1:exon:10849;Parent=Msa0847310-mRNA-1 |
| chr5_4 | five_prime_UTR | 29134276 | 29134298 | 29134276 | ID=Msa0847310-mRNA-1:five_prime_utr;Parent=Msa0847310-mRNA-1 |
| chr5_4 | CDS | 29134054 | 29134275 | 29134054 | ID=Msa0847310-mRNA-1:cds;Parent=Msa0847310-mRNA-1 |
| chr5_4 | CDS | 29130125 | 29130191 | 29130125 | ID=Msa0847310-mRNA-1:cds;Parent=Msa0847310-mRNA-1 |
| chr5_4 | CDS | 29129783 | 29130009 | 29129783 | ID=Msa0847310-mRNA-1:cds;Parent=Msa0847310-mRNA-1 |
| chr5_4 | three_prime_UTR | 29129434 | 29129782 | 29129434 | ID=Msa0847310-mRNA-1:three_prime_utr;Parent=Msa0847310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
