AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998560 MtrunA17_Chr8g0378271 96.507 229 8 0 1 229 2084 2312 2.53e-150 462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998560 AT4G13750.1 47.556 225 116 2 4 227 2098 2321 1.58e-65 219

Find 138 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTGACTTTATTTATTT+TGG 0.091849 6_4:-79624366 Msa0998560:CDS
CCAAATGAAGGTGTAAAATT+TGG 0.157795 6_4:+79625047 None:intergenic
AGATCATCATTCTTTGTTTA+TGG 0.162328 6_4:-79622612 Msa0998560:three_prime_UTR
TTGCACAGTGACTTGTTAAT+TGG 0.218549 6_4:+79624802 None:intergenic
AGTTACTCTTGATGACATTT+TGG 0.223207 6_4:-79625808 Msa0998560:five_prime_UTR
GAAAGATTGGTAAACGATAT+TGG 0.231975 6_4:-79625843 Msa0998560:five_prime_UTR
ACTTGGTAAATTTCCTTCAT+AGG 0.269487 6_4:-79622541 Msa0998560:three_prime_UTR
AGCTATTGCCATTGCCAAAA+AGG 0.291905 6_4:-79622355 Msa0998560:three_prime_UTR
AATATTTACCCTGGCCTTCA+TGG 0.305661 6_4:-79624781 Msa0998560:CDS
ACTCGTGAGGCAATATATTA+TGG 0.317031 6_4:-79623318 Msa0998560:CDS
AAAGATTGGTAAACGATATT+GGG 0.331147 6_4:-79625842 Msa0998560:five_prime_UTR
AGGTGTAAAATTTGGACATT+TGG 0.338761 6_4:+79625055 None:intergenic
CTTTCGACTTTGTTACTTGA+TGG 0.339687 6_4:-79622587 Msa0998560:three_prime_UTR
GCAATCTTTCAGTTTGTAGA+TGG 0.344799 6_4:+79622294 None:intergenic
CTTCGTTTGGTCTTGTCTGC+TGG 0.346581 6_4:-79624431 Msa0998560:CDS
GAGCCCGGAACAAATATAAA+AGG 0.358567 6_4:+79624955 None:intergenic
TCCTGATGAAGAACCTGTTT+GGG 0.364388 6_4:-79622453 Msa0998560:three_prime_UTR
ATTCGGCCATGTATATGATA+TGG 0.369935 6_4:-79621935 Msa0998560:three_prime_UTR
TATTATGTGATGTACTAATT+CGG 0.370244 6_4:-79621952 Msa0998560:three_prime_UTR
GTTCTACAGGAATGTTATAA+AGG 0.371443 6_4:-79623139 Msa0998560:three_prime_UTR
GACGGCGGTGCGATGGTGGA+TGG 0.374175 6_4:+79626704 None:intergenic
TTCCTGATGAAGAACCTGTT+TGG 0.378897 6_4:-79622454 Msa0998560:three_prime_UTR
TTTCTTATACATTTCTATAC+AGG 0.389112 6_4:-79622240 Msa0998560:three_prime_UTR
ATGGGTCGAGAAAGGAGAAA+TGG 0.397621 6_4:+79626723 None:intergenic
ACCCTGGAAGATTTGATGTC+TGG 0.398807 6_4:-79624979 Msa0998560:exon
AAGGGCTTTCTCCAACGTTC+AGG 0.399901 6_4:-79626580 Msa0998560:intron
CTGCCCACATGAGGAAAACT+TGG 0.402962 6_4:+79624571 None:intergenic
AAGCACTGGAAATTCTAGTT+TGG 0.404721 6_4:+79624488 None:intergenic
CTAACCTTTGGAACATCATA+TGG 0.419431 6_4:+79626400 None:intergenic
TTTATGATTGTGAAGAAGTC+AGG 0.419844 6_4:-79626444 Msa0998560:five_prime_UTR
GTTTCATTGCATCCTTCGTT+TGG 0.420333 6_4:-79624444 Msa0998560:CDS
GTCTCCTCGCATTGCAGAAA+GGG 0.424250 6_4:-79626598 Msa0998560:five_prime_UTR
TAAATGTAGCGCTGAGCATA+TGG 0.429491 6_4:+79623249 None:intergenic
TTGTTACTTGATGGGATTGA+TGG 0.430013 6_4:-79622578 Msa0998560:three_prime_UTR
ATCATGCCAATACACTTCAT+TGG 0.431892 6_4:+79624885 None:intergenic
CGGCGACGGCGGTGCGATGG+TGG 0.437192 6_4:+79626700 None:intergenic
CCATGTTTGTTATCCTATGA+AGG 0.438931 6_4:+79622528 None:intergenic
GGTTTCTTTGTTAATGAATG+TGG 0.439420 6_4:-79624760 Msa0998560:CDS
AGGACCGATGCTGGCGGCGA+TGG 0.439594 6_4:+79626811 None:intergenic
ATAGGTGAAAAGTGAAAGAT+TGG 0.442309 6_4:-79625856 Msa0998560:intron
TATCATTTCCTTCCAAATGA+AGG 0.450184 6_4:+79625035 None:intergenic
GTCCAGACATCAAATCTTCC+AGG 0.452708 6_4:+79624977 None:intergenic
GCCCAAACAGGTTCTTCATC+AGG 0.452832 6_4:+79622452 None:intergenic
TTGTTGAGAAGCTGTTCTAC+AGG 0.453894 6_4:-79623152 Msa0998560:three_prime_UTR
ACGGCGGTGCGATGGTGGAT+GGG 0.462940 6_4:+79626705 None:intergenic
TGAATGTAGTTGTCTTCTAC+AGG 0.464555 6_4:-79623088 Msa0998560:intron
GTTTCTTTGTTAATGAATGT+GGG 0.464584 6_4:-79624759 Msa0998560:CDS
TGGGTCGAGAAAGGAGAAAT+GGG 0.473277 6_4:+79626724 None:intergenic
TATGTTCAACTCAAGCAGTC+TGG 0.473844 6_4:-79623207 Msa0998560:three_prime_UTR
TGGTTTGCATAGTTATCAAA+TGG 0.475870 6_4:+79622314 None:intergenic
TCTTGCACAGTGGGAAGCAC+TGG 0.476746 6_4:+79624474 None:intergenic
TACTGTATCTTCGCTGGTAG+AGG 0.477257 6_4:-79622423 Msa0998560:three_prime_UTR
CGACAAAAGAGGACCGATGC+TGG 0.477692 6_4:+79626802 None:intergenic
TAAAATAAATCGTTCCGTTA+CGG 0.480300 6_4:+79626463 None:intergenic
TTTCGACTTTGTTACTTGAT+GGG 0.482571 6_4:-79622586 Msa0998560:three_prime_UTR
TGGGCAGATGGACTAGAATC+TGG 0.482674 6_4:-79624555 Msa0998560:CDS
GGTTCTTCATCAGGAAGCTT+CGG 0.491341 6_4:+79622461 None:intergenic
TGATGATGTTTGTGGGATGT+TGG 0.494947 6_4:-79624914 Msa0998560:CDS
TGACAGTGTATCAAAGGAAC+GGG 0.496137 6_4:-79623112 Msa0998560:three_prime_UTR
GAGCGGCGACGGCGGTGCGA+TGG 0.500202 6_4:+79626697 None:intergenic
GAGAAAGGAGAAATGGGTTA+AGG 0.500341 6_4:+79626730 None:intergenic
ACAAAGAAACCATGAAGGCC+AGG 0.501704 6_4:+79624772 None:intergenic
ACAGTAGATAGTGCCCAAAC+AGG 0.509330 6_4:+79622440 None:intergenic
TGCATTCCAATGAAGTGTAT+TGG 0.509434 6_4:-79624891 Msa0998560:CDS
GAGAGAAATATTTGCAACAA+AGG 0.510594 6_4:+79622272 None:intergenic
GATGATTGAAAATTATCTGA+AGG 0.511161 6_4:+79622386 None:intergenic
ATTTACTCATATCATTTACA+TGG 0.515511 6_4:+79621873 None:intergenic
GAAGAAGTCAGGCAGATCCT+TGG 0.517427 6_4:-79626433 Msa0998560:five_prime_UTR
TGTTACTTGATGGGATTGAT+GGG 0.519940 6_4:-79622577 Msa0998560:three_prime_UTR
ATGATTGAAAATTATCTGAA+GGG 0.521542 6_4:+79622387 None:intergenic
TGGCTCTGCTCAGACGATGC+AGG 0.523781 6_4:-79624857 Msa0998560:CDS
CAAAGAGAGGACGACAAAAG+AGG 0.524392 6_4:+79626791 None:intergenic
GGACCGATGCTGGCGGCGAT+GGG 0.532483 6_4:+79626812 None:intergenic
TGTCTCCTCGCATTGCAGAA+AGG 0.533199 6_4:-79626599 Msa0998560:five_prime_UTR
CGGAGAGAGGAGAAATGTAG+TGG 0.534332 6_4:+79626659 None:intergenic
ACGGCGGAGAGCGGCGACGG+CGG 0.535367 6_4:+79626689 None:intergenic
CACTCTGCCTTCACAAGCAA+CGG 0.535825 6_4:-79624677 Msa0998560:CDS
CAAAGACTTCGTTCAAGACC+AGG 0.535915 6_4:-79625758 Msa0998560:intron
TTCCCACTGTGCAAGATAAG+TGG 0.536441 6_4:-79624467 Msa0998560:CDS
TCGACGGCGGAGAGCGGCGA+CGG 0.537506 6_4:+79626686 None:intergenic
TGATTCTTCTGAGCTTGACT+CGG 0.538688 6_4:+79622013 None:intergenic
AGTCATGATGATGATGTTTG+TGG 0.546132 6_4:-79624922 Msa0998560:CDS
GTGTATTGGCATGATCCAAC+TGG 0.548132 6_4:-79624877 Msa0998560:CDS
TAAGTTCGGCGGTGCTGAGG+CGG 0.549906 6_4:+79626639 None:intergenic
GATGCTGGCGGCGATGGGTG+CGG 0.551018 6_4:+79626817 None:intergenic
CCTTCATAGGATAACAAACA+TGG 0.551062 6_4:-79622528 Msa0998560:three_prime_UTR
GCACCCATCGCCGCCAGCAT+CGG 0.551504 6_4:-79626815 Msa0998560:five_prime_UTR
GATGGTGGATGGGTCGAGAA+AGG 0.552769 6_4:+79626715 None:intergenic
GATCATACCTCTGAGATAGC+TGG 0.558756 6_4:+79624273 None:intergenic
TGACAAAATCACCACCGTAA+CGG 0.559665 6_4:-79626477 Msa0998560:five_prime_UTR
ACCCACTTATCTTGCACAGT+GGG 0.561632 6_4:+79624465 None:intergenic
TCCCACTGTGCAAGATAAGT+GGG 0.562473 6_4:-79624466 Msa0998560:CDS
GGACTGTGACAGTGTATCAA+AGG 0.566173 6_4:-79623118 Msa0998560:three_prime_UTR
ACTATCTACTGTATCTTCGC+TGG 0.571433 6_4:-79622429 Msa0998560:three_prime_UTR
GGAGAAATTTACCTGAACGT+TGG 0.571547 6_4:+79626569 None:intergenic
GGCGGTGCTGAGGCGGAGAG+AGG 0.578426 6_4:+79626646 None:intergenic
GTTACTTGATGGGATTGATG+GGG 0.579221 6_4:-79622576 Msa0998560:three_prime_UTR
CACCAAAATAAATAAAGTCA+AGG 0.579818 6_4:+79624364 None:intergenic
TGCGCCATATGATGTTCCAA+AGG 0.579866 6_4:-79626404 Msa0998560:intron
ACTTTATCCGTTGCTTGTGA+AGG 0.581241 6_4:+79624670 None:intergenic
GTCATGATGATGATGTTTGT+GGG 0.588402 6_4:-79624921 Msa0998560:CDS
TAATGAATGTGGGGTTCAAG+AGG 0.589002 6_4:-79624749 Msa0998560:CDS
AGTTAGCCATATCATATACA+TGG 0.591734 6_4:+79621929 None:intergenic
TTAAGGACTGTGAACGATGA+TGG 0.591820 6_4:+79626747 None:intergenic
GAAATGTAGTGGTGGATCGA+CGG 0.592857 6_4:+79626670 None:intergenic
TCCAGACATCAAATCTTCCA+GGG 0.593543 6_4:+79624978 None:intergenic
AATAAATCGTTCCGTTACGG+TGG 0.595544 6_4:+79626466 None:intergenic
TTTCTTTGTTAATGAATGTG+GGG 0.597945 6_4:-79624758 Msa0998560:CDS
CATACATGAATAACGCAAGA+TGG 0.599048 6_4:-79622216 Msa0998560:three_prime_UTR
TGGGGATTGTGAAATTGACT+TGG 0.599364 6_4:-79622558 Msa0998560:three_prime_UTR
TGCTTGTGAAGGCAGAGTGA+CGG 0.600186 6_4:+79624681 None:intergenic
TGAAAATTATCTGAAGGGAG+TGG 0.603701 6_4:+79622392 None:intergenic
TGAATATAGCTGTGTAGAGG+AGG 0.607093 6_4:+79624724 None:intergenic
TACTCATATCATTTACATGG+TGG 0.610543 6_4:+79621876 None:intergenic
GTGACAGTGTATCAAAGGAA+CGG 0.613344 6_4:-79623113 Msa0998560:three_prime_UTR
CATATGGCGCAAAAGTTCCA+AGG 0.615750 6_4:+79626416 None:intergenic
CAAAGAAACCATGAAGGCCA+GGG 0.620954 6_4:+79624773 None:intergenic
CAAATGTTGAGAGAGAGAAG+AGG 0.620985 6_4:+79626857 None:intergenic
CCTGGAAGATTAGAAAACCC+TGG 0.622960 6_4:-79624995 Msa0998560:five_prime_UTR
CTAGTCCATCTGCCCACATG+AGG 0.625616 6_4:+79624562 None:intergenic
GGTGGATCGACGGCGGAGAG+CGG 0.631711 6_4:+79626680 None:intergenic
TGACTATAGACAGATGAGCC+CGG 0.634141 6_4:+79624940 None:intergenic
ATCGTCTGAGCAGAGCCAGT+TGG 0.639034 6_4:+79624862 None:intergenic
ATTTGAATATAGCTGTGTAG+AGG 0.643260 6_4:+79624721 None:intergenic
ATGTAGTGGTGGATCGACGG+CGG 0.646174 6_4:+79626673 None:intergenic
CATTAACAAAGAAACCATGA+AGG 0.649314 6_4:+79624767 None:intergenic
AGATTCAAAACAGAAAACCC+TGG 0.653540 6_4:-79625013 Msa0998560:five_prime_UTR
GAATGAATTGAGCTGCATTG+AGG 0.657831 6_4:+79624826 None:intergenic
AGAGAGGAGAAATGTAGTGG+TGG 0.659274 6_4:+79626662 None:intergenic
CAAAAGAGGACCGATGCTGG+CGG 0.659808 6_4:+79626805 None:intergenic
AAAGCCCTTTCTGCAATGCG+AGG 0.660995 6_4:+79626594 None:intergenic
TCACTGTGCAATATTTACCC+TGG 0.672507 6_4:-79624790 Msa0998560:CDS
ACACGACGAGATGCAAAGAG+AGG 0.673577 6_4:+79626778 None:intergenic
CATGCAGGTGGTGACTCGTG+AGG 0.680712 6_4:-79623331 Msa0998560:intron
TGGGTGCGGTGATAGTGATG+AGG 0.693704 6_4:+79626831 None:intergenic
AGGTATTCCAGCTATCTCAG+AGG 0.710689 6_4:-79624280 Msa0998560:intron
CAGCAGACAAGACCAAACGA+AGG 0.711657 6_4:+79624432 None:intergenic
AACCCACTTATCTTGCACAG+TGG 0.745548 6_4:+79624464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTTAGTTTAAGAATA+TGG - chr6_4:79622344-79622363 Msa0998560:three_prime_UTR 15.0%
!! GATTTGAGAAAATTTATTTA+TGG - chr6_4:79622679-79622698 Msa0998560:intron 15.0%
!!! TTTAAAGTTGTAAAATGTTT+CGG - chr6_4:79623051-79623070 Msa0998560:intron 15.0%
!!! TGAATTTGTGTAATTTTAAA+AGG + chr6_4:79623562-79623581 None:intergenic 15.0%
!!! ATACACTTTTTGTTTAAAAA+TGG - chr6_4:79624594-79624613 Msa0998560:intron 15.0%
!!! TACACTTTTTGTTTAAAAAT+GGG - chr6_4:79624595-79624614 Msa0998560:intron 15.0%
!!! AATTTTCAATTTAGTTTTGT+GGG + chr6_4:79625121-79625140 None:intergenic 15.0%
!!! AAATTTTCAATTTAGTTTTG+TGG + chr6_4:79625122-79625141 None:intergenic 15.0%
!! ACAAAACTAAATTGAAAATT+TGG - chr6_4:79625121-79625140 Msa0998560:intron 15.0%
!!! TCAGATGAAAATTTTAAGTT+CGG + chr6_4:79622049-79622068 None:intergenic 20.0%
!! ACAAAATCAGAAATAAAAAC+AGG + chr6_4:79622425-79622444 None:intergenic 20.0%
!! ACAAAATCAGAAATAAAAAC+AGG + chr6_4:79622425-79622444 None:intergenic 20.0%
!! TTAGATCCAATAAAAAACTT+TGG - chr6_4:79623148-79623167 Msa0998560:three_prime_UTR 20.0%
!!! AACCTTGACTTTATTTATTT+TGG - chr6_4:79624305-79624324 Msa0998560:CDS 20.0%
!!! GAATACCTAAATTTTTCATA+AGG + chr6_4:79624379-79624398 None:intergenic 20.0%
!!! ATGAAATTAGTGACTTTTTT+TGG - chr6_4:79624756-79624775 Msa0998560:CDS 20.0%
!!! TAAGCATTATCTGAATTTTT+TGG - chr6_4:79624906-79624925 Msa0998560:CDS 20.0%
!!! AAGCATTATCTGAATTTTTT+GGG - chr6_4:79624907-79624926 Msa0998560:CDS 20.0%
!! TGTCTTAAAAGTTTATTAAG+AGG + chr6_4:79625070-79625089 None:intergenic 20.0%
!! TTTCAAATATTGTTTACTTG+TGG - chr6_4:79625208-79625227 Msa0998560:intron 20.0%
!! ATGATTGAAAATTATCTGAA+GGG + chr6_4:79626287-79626306 None:intergenic 20.0%
!! TTTCTTATACATTTCTATAC+AGG - chr6_4:79626431-79626450 Msa0998560:five_prime_UTR 20.0%
!! TATTATGTGATGTACTAATT+CGG - chr6_4:79626719-79626738 Msa0998560:five_prime_UTR 20.0%
!! ATTTACTCATATCATTTACA+TGG + chr6_4:79626801-79626820 None:intergenic 20.0%
!!! TATCATTTTAAGGCATTTTA+AGG + chr6_4:79626849-79626868 None:intergenic 20.0%
! TGAAAGAAAAATGAGGAATT+GGG + chr6_4:79622126-79622145 None:intergenic 25.0%
! TAAAATAAATCGTTCCGTTA+CGG + chr6_4:79622211-79622230 None:intergenic 25.0%
!!! TATAGGGTTGGTAATATATA+TGG - chr6_4:79622476-79622495 Msa0998560:three_prime_UTR 25.0%
!!! ATATATATGGTTTGCTTACT+TGG - chr6_4:79622489-79622508 Msa0998560:three_prime_UTR 25.0%
!!! TATATATGGTTTGCTTACTT+GGG - chr6_4:79622490-79622509 Msa0998560:three_prime_UTR 25.0%
!!! AATTCTAGAATGCAGATAAT+AGG + chr6_4:79622523-79622542 None:intergenic 25.0%
!! TATTTAGGGTTCGTAATATA+AGG - chr6_4:79622601-79622620 Msa0998560:three_prime_UTR 25.0%
!!! TATTTATGGTTTTTTCCTTG+CGG - chr6_4:79622693-79622712 Msa0998560:intron 25.0%
! TCTGTCAAAAAAGGAAATAA+CGG - chr6_4:79622777-79622796 Msa0998560:intron 25.0%
! AAAGATTGGTAAACGATATT+GGG - chr6_4:79622829-79622848 Msa0998560:intron 25.0%
!!! TGTTTTATTCATGAAAAGTG+TGG + chr6_4:79622994-79623013 None:intergenic 25.0%
! AATAAAACACGAATATGACA+TGG - chr6_4:79623005-79623024 Msa0998560:intron 25.0%
! AATGATTCTCTGTTATAACT+TGG + chr6_4:79623102-79623121 None:intergenic 25.0%
!! TGTTTTCAAAAATCAACTAC+AGG - chr6_4:79623121-79623140 Msa0998560:three_prime_UTR 25.0%
!!! TTTGGTTCGTCTATTTTTTT+TGG - chr6_4:79623166-79623185 Msa0998560:three_prime_UTR 25.0%
!!! TTGGTTCGTCTATTTTTTTT+GGG - chr6_4:79623167-79623186 Msa0998560:three_prime_UTR 25.0%
! TACATTGGATAAACAATCAT+TGG + chr6_4:79623275-79623294 None:intergenic 25.0%
! ATTGTTTATCCAATGTATGA+CGG - chr6_4:79623278-79623297 Msa0998560:exon 25.0%
!!! GAATAATAAGCATTGAACAT+TGG + chr6_4:79623351-79623370 None:intergenic 25.0%
! TCAAATCTTAAGATGTTAGA+TGG - chr6_4:79623406-79623425 Msa0998560:intron 25.0%
! ATTTGTAGCTATGTATGAAT+TGG - chr6_4:79623506-79623525 Msa0998560:intron 25.0%
! TTTGTAGCTATGTATGAATT+GGG - chr6_4:79623507-79623526 Msa0998560:intron 25.0%
! GTTTCTTTGTTAATGAATGT+GGG - chr6_4:79623912-79623931 Msa0998560:intron 25.0%
! TTTCTTTGTTAATGAATGTG+GGG - chr6_4:79623913-79623932 Msa0998560:intron 25.0%
! CACCAAAATAAATAAAGTCA+AGG + chr6_4:79624310-79624329 None:intergenic 25.0%
! TCCTTCCTTATGAAAAATTT+AGG - chr6_4:79624371-79624390 Msa0998560:CDS 25.0%
!! ACCTAAATTTTTCATAAGGA+AGG + chr6_4:79624375-79624394 None:intergenic 25.0%
! TTTAAAAATGGGAATCAACT+TGG - chr6_4:79624606-79624625 Msa0998560:intron 25.0%
! ATATAACAATAACATCACTG+TGG + chr6_4:79624857-79624876 None:intergenic 25.0%
! AATCACTTAATTAGGTCAAA+GGG + chr6_4:79624998-79625017 None:intergenic 25.0%
! AAATCACTTAATTAGGTCAA+AGG + chr6_4:79624999-79625018 None:intergenic 25.0%
! GCTAGAAAAATCACTTAATT+AGG + chr6_4:79625006-79625025 None:intergenic 25.0%
! TGAAAATTTGGACATAAGTA+AGG - chr6_4:79625133-79625152 Msa0998560:intron 25.0%
! GAAAATTTGGACATAAGTAA+GGG - chr6_4:79625134-79625153 Msa0998560:intron 25.0%
! TTTATGTGATACAAAGGAAT+AGG - chr6_4:79625185-79625204 Msa0998560:intron 25.0%
!! TTTTATTCTCAATTCATCGT+TGG - chr6_4:79625832-79625851 Msa0998560:five_prime_UTR 25.0%
!! AGATCATCATTCTTTGTTTA+TGG - chr6_4:79626059-79626078 Msa0998560:intron 25.0%
! GATGATTGAAAATTATCTGA+AGG + chr6_4:79626288-79626307 None:intergenic 25.0%
! TGAAACACAAAAAATTCATG+TGG - chr6_4:79626484-79626503 Msa0998560:five_prime_UTR 25.0%
! AATGTAAGTACACTTAGATT+TGG - chr6_4:79626518-79626537 Msa0998560:intron 25.0%
!!! GATGAAAATTTTAAGTTCGG+CGG + chr6_4:79622046-79622065 None:intergenic 30.0%
GTGAAAGAAAAATGAGGAAT+TGG + chr6_4:79622127-79622146 None:intergenic 30.0%
TTTATGATTGTGAAGAAGTC+AGG - chr6_4:79622227-79622246 Msa0998560:three_prime_UTR 30.0%
TGTACAAAACAACTAACCTT+TGG + chr6_4:79622286-79622305 None:intergenic 30.0%
! TGATTTTGTGTCATATGCTT+GGG - chr6_4:79622436-79622455 Msa0998560:three_prime_UTR 30.0%
TTGATTGTCCTGCTATATAT+AGG - chr6_4:79622459-79622478 Msa0998560:three_prime_UTR 30.0%
TGATTGTCCTGCTATATATA+GGG - chr6_4:79622460-79622479 Msa0998560:three_prime_UTR 30.0%
! TGATTTTGTGTCGTATACTT+AGG - chr6_4:79622563-79622582 Msa0998560:three_prime_UTR 30.0%
TTGATTGTCCTGCTATATTT+AGG - chr6_4:79622586-79622605 Msa0998560:three_prime_UTR 30.0%
TGATTGTCCTGCTATATTTA+GGG - chr6_4:79622587-79622606 Msa0998560:three_prime_UTR 30.0%
ATAGGTGAAAAGTGAAAGAT+TGG - chr6_4:79622815-79622834 Msa0998560:intron 30.0%
GAAAGATTGGTAAACGATAT+TGG - chr6_4:79622828-79622847 Msa0998560:intron 30.0%
!! AGTTACTCTTGATGACATTT+TGG - chr6_4:79622863-79622882 Msa0998560:intron 30.0%
! TTTTGGATATTCTTAAAGCC+TGG - chr6_4:79622880-79622899 Msa0998560:intron 30.0%
! GCTTTTATGTACAGACAAAA+TGG - chr6_4:79622950-79622969 Msa0998560:intron 30.0%
!!! GACGAACCAAAGTTTTTTAT+TGG + chr6_4:79623157-79623176 None:intergenic 30.0%
!! AGCTATTAGTGGGTTTATAT+TGG - chr6_4:79623430-79623449 Msa0998560:intron 30.0%
AGGTGTAAAATTTGGACATT+TGG + chr6_4:79623619-79623638 None:intergenic 30.0%
! CCAAATGAAGGTGTAAAATT+TGG + chr6_4:79623627-79623646 None:intergenic 30.0%
! CCAAATTTTACACCTTCATT+TGG - chr6_4:79623624-79623643 Msa0998560:intron 30.0%
! ATTTTACACCTTCATTTGGA+AGG - chr6_4:79623628-79623647 Msa0998560:intron 30.0%
TATCATTTCCTTCCAAATGA+AGG + chr6_4:79623639-79623658 None:intergenic 30.0%
! TGGACCTTTTATATTTGTTC+CGG - chr6_4:79623712-79623731 Msa0998560:intron 30.0%
CATTAACAAAGAAACCATGA+AGG + chr6_4:79623907-79623926 None:intergenic 30.0%
GGTTTCTTTGTTAATGAATG+TGG - chr6_4:79623911-79623930 Msa0998560:intron 30.0%
ATTTGAATATAGCTGTGTAG+AGG + chr6_4:79623953-79623972 None:intergenic 30.0%
!!! TTATTTTGGTGAAGAAACTG+AGG - chr6_4:79624319-79624338 Msa0998560:CDS 30.0%
CAATGAATTGCTTTGTAACA+TGG + chr6_4:79624782-79624801 None:intergenic 30.0%
CATGTTACAAAGCAATTCAT+TGG - chr6_4:79624780-79624799 Msa0998560:CDS 30.0%
ATTATGTTAGCTACCAAACT+TGG - chr6_4:79624822-79624841 Msa0998560:CDS 30.0%
TTATGTTAGCTACCAAACTT+GGG - chr6_4:79624823-79624842 Msa0998560:CDS 30.0%
GAAAGGTTTGATAGATGAAT+AGG + chr6_4:79625034-79625053 None:intergenic 30.0%
ATTAAGAGGTCTAATCAGTT+TGG + chr6_4:79625056-79625075 None:intergenic 30.0%
TTCTTCCATTTACTTTACAG+AGG + chr6_4:79625095-79625114 None:intergenic 30.0%
AAGCGATTTATGTGATACAA+AGG - chr6_4:79625179-79625198 Msa0998560:intron 30.0%
ACTTTATACCCATGCAATTT+CGG + chr6_4:79625261-79625280 None:intergenic 30.0%
GTTCTACAGGAATGTTATAA+AGG - chr6_4:79625532-79625551 Msa0998560:intron 30.0%
TCAAACTAAATAATAGCCAG+TGG + chr6_4:79625686-79625705 None:intergenic 30.0%
AGTCTAGGTGAACAAATAAA+TGG + chr6_4:79625713-79625732 None:intergenic 30.0%
!! TAGACTATCGATTTCGATTA+GGG - chr6_4:79625727-79625746 Msa0998560:intron 30.0%
GAAGAGAAAAAACTTACACA+AGG + chr6_4:79625965-79625984 None:intergenic 30.0%
! TTTCGACTTTGTTACTTGAT+GGG - chr6_4:79626085-79626104 Msa0998560:intron 30.0%
ACTTGGTAAATTTCCTTCAT+AGG - chr6_4:79626130-79626149 Msa0998560:intron 30.0%
! TGGTTTGCATAGTTATCAAA+TGG + chr6_4:79626360-79626379 None:intergenic 30.0%
GAGAGAAATATTTGCAACAA+AGG + chr6_4:79626402-79626421 None:intergenic 30.0%
TAAAGCCATAGATGTGTAAA+TGG - chr6_4:79626569-79626588 Msa0998560:intron 30.0%
ATGAACCATTTACACATCTA+TGG + chr6_4:79626577-79626596 None:intergenic 30.0%
! TGTGTAAATGGTTCATTTTC+AGG - chr6_4:79626581-79626600 Msa0998560:five_prime_UTR 30.0%
AGTTAGCCATATCATATACA+TGG + chr6_4:79626745-79626764 None:intergenic 30.0%
TACTCATATCATTTACATGG+TGG + chr6_4:79626798-79626817 None:intergenic 30.0%
TCGAGAGTGAAAGAAAAATG+AGG + chr6_4:79622133-79622152 None:intergenic 35.0%
!! CTAACCTTTGGAACATCATA+TGG + chr6_4:79622274-79622293 None:intergenic 35.0%
! CTGATTTTGTGTCATATGCT+TGG - chr6_4:79622435-79622454 Msa0998560:three_prime_UTR 35.0%
TTACCAACCCTATATATAGC+AGG + chr6_4:79622470-79622489 None:intergenic 35.0%
TTACGAACCCTAAATATAGC+AGG + chr6_4:79622597-79622616 None:intergenic 35.0%
TTAGTGTTTGTGCTTGTATG+TGG - chr6_4:79622729-79622748 Msa0998560:intron 35.0%
ACATTGCTGTCTGTCAAAAA+AGG - chr6_4:79622768-79622787 Msa0998560:intron 35.0%
AAAAAAGGAAATAACGGCTG+TGG - chr6_4:79622783-79622802 Msa0998560:intron 35.0%
!! AGTCTTTGATGATTTTCTCC+AGG + chr6_4:79622901-79622920 None:intergenic 35.0%
CACGAATATGACATGGAAAA+TGG - chr6_4:79623012-79623031 Msa0998560:intron 35.0%
! TTCTCTGTTATAACTTGGTG+CGG + chr6_4:79623097-79623116 None:intergenic 35.0%
!!! TTTTTTGGGTTTCATCTGCA+TGG - chr6_4:79623181-79623200 Msa0998560:three_prime_UTR 35.0%
!!! TTTTTGGGTTTCATCTGCAT+GGG - chr6_4:79623182-79623201 Msa0998560:three_prime_UTR 35.0%
TAGAATGCATAACGCTTTGA+GGG - chr6_4:79623231-79623250 Msa0998560:three_prime_UTR 35.0%
GATAATTAGAGCAAGCAAAG+AGG + chr6_4:79623329-79623348 None:intergenic 35.0%
TGTTAGATGGAAGCTATTAG+TGG - chr6_4:79623419-79623438 Msa0998560:intron 35.0%
GTTAGATGGAAGCTATTAGT+GGG - chr6_4:79623420-79623439 Msa0998560:intron 35.0%
ACACACACACTCTGATTATA+CGG - chr6_4:79623461-79623480 Msa0998560:intron 35.0%
AGATTCAAAACAGAAAACCC+TGG - chr6_4:79623658-79623677 Msa0998560:intron 35.0%
! GGACCTTTTATATTTGTTCC+GGG - chr6_4:79623713-79623732 Msa0998560:intron 35.0%
! AGTCATGATGATGATGTTTG+TGG - chr6_4:79623749-79623768 Msa0998560:intron 35.0%
! GTCATGATGATGATGTTTGT+GGG - chr6_4:79623750-79623769 Msa0998560:intron 35.0%
TGCATTCCAATGAAGTGTAT+TGG - chr6_4:79623780-79623799 Msa0998560:intron 35.0%
ATCATGCCAATACACTTCAT+TGG + chr6_4:79623789-79623808 None:intergenic 35.0%
!! TTGCACAGTGACTTGTTAAT+TGG + chr6_4:79623872-79623891 None:intergenic 35.0%
TGAGGAAAACTTGGAAAATC+TGG + chr6_4:79624094-79624113 None:intergenic 35.0%
! TTTTCCAAGTTTTCCTCATG+TGG - chr6_4:79624096-79624115 Msa0998560:intron 35.0%
! TTTCCAAGTTTTCCTCATGT+GGG - chr6_4:79624097-79624116 Msa0998560:intron 35.0%
!! AAGCACTGGAAATTCTAGTT+TGG + chr6_4:79624186-79624205 None:intergenic 35.0%
TCTTGTGCACTTCTTTATCT+TGG - chr6_4:79624427-79624446 Msa0998560:CDS 35.0%
TCTAGACACTTCTCAAACTA+TGG - chr6_4:79624468-79624487 Msa0998560:CDS 35.0%
! TTTTGTGCTCAACTGTATGA+TGG - chr6_4:79624566-79624585 Msa0998560:CDS 35.0%
! ATGTCAATGTTGGGCATTTT+TGG + chr6_4:79624664-79624683 None:intergenic 35.0%
AAAATGCCCAACATTGACAT+TGG - chr6_4:79624664-79624683 Msa0998560:intron 35.0%
TAACCACCAATGTCAATGTT+GGG + chr6_4:79624673-79624692 None:intergenic 35.0%
TTAACCACCAATGTCAATGT+TGG + chr6_4:79624674-79624693 None:intergenic 35.0%
ATTGAAAGCTTGAGCAATTG+AGG + chr6_4:79624725-79624744 None:intergenic 35.0%
TTGTCTTTCCGAAATTGCAT+GGG - chr6_4:79625250-79625269 Msa0998560:intron 35.0%
! AGTCTTATATGACAACATGC+AGG - chr6_4:79625325-79625344 Msa0998560:intron 35.0%
ACTCGTGAGGCAATATATTA+TGG - chr6_4:79625353-79625372 Msa0998560:intron 35.0%
TGAATGTAGTTGTCTTCTAC+AGG - chr6_4:79625583-79625602 Msa0998560:intron 35.0%
CTAATCGAAATCGATAGTCT+AGG + chr6_4:79625728-79625747 None:intergenic 35.0%
!! CTAGACTATCGATTTCGATT+AGG - chr6_4:79625726-79625745 Msa0998560:intron 35.0%
!! AGACTATCGATTTCGATTAG+GGG - chr6_4:79625728-79625747 Msa0998560:intron 35.0%
! CAATTCATCGTTGGTTATTC+AGG - chr6_4:79625841-79625860 Msa0998560:five_prime_UTR 35.0%
TGATAAAGACACAGACAAAC+AGG + chr6_4:79626007-79626026 None:intergenic 35.0%
TTTGTCTGTGTCTTTATCAC+AGG - chr6_4:79626008-79626027 Msa0998560:intron 35.0%
TTGTCTGTGTCTTTATCACA+GGG - chr6_4:79626009-79626028 Msa0998560:intron 35.0%
! CTTTCGACTTTGTTACTTGA+TGG - chr6_4:79626084-79626103 Msa0998560:intron 35.0%
! TTGTTACTTGATGGGATTGA+TGG - chr6_4:79626093-79626112 Msa0998560:intron 35.0%
! TGTTACTTGATGGGATTGAT+GGG - chr6_4:79626094-79626113 Msa0998560:intron 35.0%
!! CCATGTTTGTTATCCTATGA+AGG + chr6_4:79626146-79626165 None:intergenic 35.0%
CCTTCATAGGATAACAAACA+TGG - chr6_4:79626143-79626162 Msa0998560:intron 35.0%
! GCTGTTCAACATTTTCTCAA+GGG + chr6_4:79626181-79626200 None:intergenic 35.0%
TGAAAATTATCTGAAGGGAG+TGG + chr6_4:79626282-79626301 None:intergenic 35.0%
! ACATGTTCTTCCTTCCTTTT+TGG + chr6_4:79626333-79626352 None:intergenic 35.0%
GCAATCTTTCAGTTTGTAGA+TGG + chr6_4:79626380-79626399 None:intergenic 35.0%
CATACATGAATAACGCAAGA+TGG - chr6_4:79626455-79626474 Msa0998560:five_prime_UTR 35.0%
ATTCGGCCATGTATATGATA+TGG - chr6_4:79626736-79626755 Msa0998560:five_prime_UTR 35.0%
TTAAGGACTGTGAACGATGA+TGG + chr6_4:79621927-79621946 None:intergenic 40.0%
!! GAGAAAGGAGAAATGGGTTA+AGG + chr6_4:79621944-79621963 None:intergenic 40.0%
GGAGAAATTTACCTGAACGT+TGG + chr6_4:79622105-79622124 None:intergenic 40.0%
GCAAAGAATTGGGTGAGTTA+TGG + chr6_4:79622158-79622177 None:intergenic 40.0%
GTCTACAGACGCAAAGAATT+GGG + chr6_4:79622168-79622187 None:intergenic 40.0%
TGACAAAATCACCACCGTAA+CGG - chr6_4:79622194-79622213 Msa0998560:three_prime_UTR 40.0%
AATAAATCGTTCCGTTACGG+TGG + chr6_4:79622208-79622227 None:intergenic 40.0%
AAGAATATGGTCTGCTTGCT+TGG - chr6_4:79622357-79622376 Msa0998560:three_prime_UTR 40.0%
AGAATATGGTCTGCTTGCTT+GGG - chr6_4:79622358-79622377 Msa0998560:three_prime_UTR 40.0%
TGTCCTGCTATATATAGGGT+TGG - chr6_4:79622464-79622483 Msa0998560:three_prime_UTR 40.0%
AATGTAAAACAAGAGCCGCA+AGG + chr6_4:79622711-79622730 None:intergenic 40.0%
GTAGAATGCATAACGCTTTG+AGG - chr6_4:79623230-79623249 Msa0998560:three_prime_UTR 40.0%
!! TTTGAGGGAGGAGTATTACA+TGG - chr6_4:79623246-79623265 Msa0998560:three_prime_UTR 40.0%
CACACACACTCTGATTATAC+GGG - chr6_4:79623462-79623481 Msa0998560:intron 40.0%
! TTGGACATTTGGCTTATGCT+GGG + chr6_4:79623608-79623627 None:intergenic 40.0%
! TTTGGACATTTGGCTTATGC+TGG + chr6_4:79623609-79623628 None:intergenic 40.0%
! CAGGGTTTTCTAATCTTCCA+GGG + chr6_4:79623678-79623697 None:intergenic 40.0%
TCCAGACATCAAATCTTCCA+GGG + chr6_4:79623696-79623715 None:intergenic 40.0%
GAGCCCGGAACAAATATAAA+AGG + chr6_4:79623719-79623738 None:intergenic 40.0%
! TGATGATGTTTGTGGGATGT+TGG - chr6_4:79623757-79623776 Msa0998560:intron 40.0%
GAATGAATTGAGCTGCATTG+AGG + chr6_4:79623848-79623867 None:intergenic 40.0%
TCACTGTGCAATATTTACCC+TGG - chr6_4:79623881-79623900 Msa0998560:intron 40.0%
! AATATTTACCCTGGCCTTCA+TGG - chr6_4:79623890-79623909 Msa0998560:intron 40.0%
TAATGAATGTGGGGTTCAAG+AGG - chr6_4:79623922-79623941 Msa0998560:intron 40.0%
TGAATATAGCTGTGTAGAGG+AGG + chr6_4:79623950-79623969 None:intergenic 40.0%
ACTTTATCCGTTGCTTGTGA+AGG + chr6_4:79624004-79624023 None:intergenic 40.0%
GAGCAAGGTAAGAATGTTTC+AGG + chr6_4:79624061-79624080 None:intergenic 40.0%
TCTGGAAAGAGAAAAGAGCA+AGG + chr6_4:79624076-79624095 None:intergenic 40.0%
GTTTCATTGCATCCTTCGTT+TGG - chr6_4:79624227-79624246 Msa0998560:intron 40.0%
! GTGGACTATATTCCCAAGTT+TGG + chr6_4:79624838-79624857 None:intergenic 40.0%
!! CTAGAGTGCTTGATCCTTTT+TGG - chr6_4:79624969-79624988 Msa0998560:exon 40.0%
AGGTCAAAGGGAAACCAAAA+AGG + chr6_4:79624986-79625005 None:intergenic 40.0%
GAGGTCTAATCAGTTTGGAA+AGG + chr6_4:79625051-79625070 None:intergenic 40.0%
ACACGCCTCTGTAAAGTAAA+TGG - chr6_4:79625087-79625106 Msa0998560:intron 40.0%
TGCAATTTCGGAAAGACAAC+TGG + chr6_4:79625249-79625268 None:intergenic 40.0%
GTTGTCTTTCCGAAATTGCA+TGG - chr6_4:79625249-79625268 Msa0998560:intron 40.0%
CTTATATGACAACATGCAGG+TGG - chr6_4:79625328-79625347 Msa0998560:intron 40.0%
! TAAATGTAGCGCTGAGCATA+TGG + chr6_4:79625425-79625444 None:intergenic 40.0%
TATGTTCAACTCAAGCAGTC+TGG - chr6_4:79625464-79625483 Msa0998560:intron 40.0%
TTGTTGAGAAGCTGTTCTAC+AGG - chr6_4:79625519-79625538 Msa0998560:intron 40.0%
GTGACAGTGTATCAAAGGAA+CGG - chr6_4:79625558-79625577 Msa0998560:intron 40.0%
TGACAGTGTATCAAAGGAAC+GGG - chr6_4:79625559-79625578 Msa0998560:intron 40.0%
! GTGGTTTTCAGTTTCTGTCA+TGG + chr6_4:79625667-79625686 None:intergenic 40.0%
TGACAGAAACTGAAAACCAC+TGG - chr6_4:79625667-79625686 Msa0998560:intron 40.0%
CAAAGTTAGTCAAGAGTTCG+AGG + chr6_4:79625804-79625823 None:intergenic 40.0%
CTCGAACTCTTGACTAACTT+TGG - chr6_4:79625802-79625821 Msa0998560:five_prime_UTR 40.0%
GTTACTTGATGGGATTGATG+GGG - chr6_4:79626095-79626114 Msa0998560:intron 40.0%
TGGGGATTGTGAAATTGACT+TGG - chr6_4:79626113-79626132 Msa0998560:intron 40.0%
! GGCTGTTCAACATTTTCTCA+AGG + chr6_4:79626182-79626201 None:intergenic 40.0%
TTCCTGATGAAGAACCTGTT+TGG - chr6_4:79626217-79626236 Msa0998560:intron 40.0%
TCCTGATGAAGAACCTGTTT+GGG - chr6_4:79626218-79626237 Msa0998560:intron 40.0%
ACTATCTACTGTATCTTCGC+TGG - chr6_4:79626242-79626261 Msa0998560:intron 40.0%
ATTGCCATTGCCAAAAAGGA+AGG - chr6_4:79626320-79626339 Msa0998560:intron 40.0%
!! TCTTCCTTCCTTTTTGGCAA+TGG + chr6_4:79626327-79626346 None:intergenic 40.0%
!! CACATCTATGGCTTTAGTCT+GGG + chr6_4:79626565-79626584 None:intergenic 40.0%
!! ACACATCTATGGCTTTAGTC+TGG + chr6_4:79626566-79626585 None:intergenic 40.0%
TGATTCTTCTGAGCTTGACT+CGG + chr6_4:79626661-79626680 None:intergenic 40.0%
CAAAGAGAGGACGACAAAAG+AGG + chr6_4:79621883-79621902 None:intergenic 45.0%
TGGGTCGAGAAAGGAGAAAT+GGG + chr6_4:79621950-79621969 None:intergenic 45.0%
ATGGGTCGAGAAAGGAGAAA+TGG + chr6_4:79621951-79621970 None:intergenic 45.0%
!! GAAATGTAGTGGTGGATCGA+CGG + chr6_4:79622004-79622023 None:intergenic 45.0%
AGAGAGGAGAAATGTAGTGG+TGG + chr6_4:79622012-79622031 None:intergenic 45.0%
CGTCTACAGACGCAAAGAAT+TGG + chr6_4:79622169-79622188 None:intergenic 45.0%
TTCTTTGCGTCTGTAGACGA+CGG - chr6_4:79622170-79622189 Msa0998560:intron 45.0%
CATATGGCGCAAAAGTTCCA+AGG + chr6_4:79622258-79622277 None:intergenic 45.0%
TGCGCCATATGATGTTCCAA+AGG - chr6_4:79622267-79622286 Msa0998560:three_prime_UTR 45.0%
!! TGGTTTGCTTACTTGGGTCT+TGG - chr6_4:79622496-79622515 Msa0998560:three_prime_UTR 45.0%
! GGTTTGCTTACTTGGGTCTT+GGG - chr6_4:79622497-79622516 Msa0998560:three_prime_UTR 45.0%
CGGCTGTGGATCTTTGATAT+AGG - chr6_4:79622797-79622816 Msa0998560:intron 45.0%
CAAAGACTTCGTTCAAGACC+AGG - chr6_4:79622913-79622932 Msa0998560:intron 45.0%
! AGACCAGGTGTGTACGTTTT+AGG - chr6_4:79622928-79622947 Msa0998560:intron 45.0%
AAGCCTAAAACGTACACACC+TGG + chr6_4:79622934-79622953 None:intergenic 45.0%
!! AATGCATAACGCTTTGAGGG+AGG - chr6_4:79623234-79623253 Msa0998560:three_prime_UTR 45.0%
ACAGTGTCTCCGTCATACAT+TGG + chr6_4:79623290-79623309 None:intergenic 45.0%
! CCAGGGTTTTCTAATCTTCC+AGG + chr6_4:79623679-79623698 None:intergenic 45.0%
CCTGGAAGATTAGAAAACCC+TGG - chr6_4:79623676-79623695 Msa0998560:intron 45.0%
ACCCTGGAAGATTTGATGTC+TGG - chr6_4:79623692-79623711 Msa0998560:intron 45.0%
GTCCAGACATCAAATCTTCC+AGG + chr6_4:79623697-79623716 None:intergenic 45.0%
TGACTATAGACAGATGAGCC+CGG + chr6_4:79623734-79623753 None:intergenic 45.0%
! GTGTATTGGCATGATCCAAC+TGG - chr6_4:79623794-79623813 Msa0998560:intron 45.0%
CAAAGAAACCATGAAGGCCA+GGG + chr6_4:79623901-79623920 None:intergenic 45.0%
ACAAAGAAACCATGAAGGCC+AGG + chr6_4:79623902-79623921 None:intergenic 45.0%
TTCCCACTGTGCAAGATAAG+TGG - chr6_4:79624204-79624223 Msa0998560:intron 45.0%
TCCCACTGTGCAAGATAAGT+GGG - chr6_4:79624205-79624224 Msa0998560:intron 45.0%
ACCCACTTATCTTGCACAGT+GGG + chr6_4:79624209-79624228 None:intergenic 45.0%
AACCCACTTATCTTGCACAG+TGG + chr6_4:79624210-79624229 None:intergenic 45.0%
AGGTATTCCAGCTATCTCAG+AGG - chr6_4:79624391-79624410 Msa0998560:CDS 45.0%
!! GATCATACCTCTGAGATAGC+TGG + chr6_4:79624401-79624420 None:intergenic 45.0%
GGAATCAACTTGGAGTGACA+TGG - chr6_4:79624616-79624635 Msa0998560:intron 45.0%
GAGAACATACACACATGCAC+GGG + chr6_4:79624642-79624661 None:intergenic 45.0%
GGAGAACATACACACATGCA+CGG + chr6_4:79624643-79624662 None:intergenic 45.0%
ATGCCCAACATTGACATTGG+TGG - chr6_4:79624667-79624686 Msa0998560:intron 45.0%
CAATTGAGGAGGCTTGTAAG+TGG + chr6_4:79624711-79624730 None:intergenic 45.0%
GAAAGCTTGAGCAATTGAGG+AGG + chr6_4:79624722-79624741 None:intergenic 45.0%
GGACTGTGACAGTGTATCAA+AGG - chr6_4:79625553-79625572 Msa0998560:intron 45.0%
AGGGGCTTGAATTGAAGTTC+TGG - chr6_4:79625746-79625765 Msa0998560:intron 45.0%
GGTTCTTCATCAGGAAGCTT+CGG + chr6_4:79626213-79626232 None:intergenic 45.0%
ACAGTAGATAGTGCCCAAAC+AGG + chr6_4:79626234-79626253 None:intergenic 45.0%
TACTGTATCTTCGCTGGTAG+AGG - chr6_4:79626248-79626267 Msa0998560:intron 45.0%
ACACGACGAGATGCAAAGAG+AGG + chr6_4:79621896-79621915 None:intergenic 50.0%
CGGAGAGAGGAGAAATGTAG+TGG + chr6_4:79622015-79622034 None:intergenic 50.0%
!!! TTTTAAGTTCGGCGGTGCTG+AGG + chr6_4:79622038-79622057 None:intergenic 50.0%
TGTCTCCTCGCATTGCAGAA+AGG - chr6_4:79622072-79622091 Msa0998560:intron 50.0%
GTCTCCTCGCATTGCAGAAA+GGG - chr6_4:79622073-79622092 Msa0998560:intron 50.0%
AAAGCCCTTTCTGCAATGCG+AGG + chr6_4:79622080-79622099 None:intergenic 50.0%
AAGGGCTTTCTCCAACGTTC+AGG - chr6_4:79622091-79622110 Msa0998560:intron 50.0%
GAAGAAGTCAGGCAGATCCT+TGG - chr6_4:79622238-79622257 Msa0998560:three_prime_UTR 50.0%
TGCTTGTGAAGGCAGAGTGA+CGG + chr6_4:79623993-79624012 None:intergenic 50.0%
CACTCTGCCTTCACAAGCAA+CGG - chr6_4:79623994-79624013 Msa0998560:intron 50.0%
CTGCCCACATGAGGAAAACT+TGG + chr6_4:79624103-79624122 None:intergenic 50.0%
! GTTTTCCTCATGTGGGCAGA+TGG - chr6_4:79624104-79624123 Msa0998560:intron 50.0%
!! TGGGCAGATGGACTAGAATC+TGG - chr6_4:79624116-79624135 Msa0998560:intron 50.0%
CAGCAGACAAGACCAAACGA+AGG + chr6_4:79624242-79624261 None:intergenic 50.0%
!! CTTCGTTTGGTCTTGTCTGC+TGG - chr6_4:79624240-79624259 Msa0998560:intron 50.0%
! CAGGAAGCTTCGGCACTTTT+TGG + chr6_4:79626203-79626222 None:intergenic 50.0%
GCCCAAACAGGTTCTTCATC+AGG + chr6_4:79626222-79626241 None:intergenic 50.0%
! TGGGTGCGGTGATAGTGATG+AGG + chr6_4:79621843-79621862 None:intergenic 55.0%
CAAAAGAGGACCGATGCTGG+CGG + chr6_4:79621869-79621888 None:intergenic 55.0%
CGACAAAAGAGGACCGATGC+TGG + chr6_4:79621872-79621891 None:intergenic 55.0%
!! GATGGTGGATGGGTCGAGAA+AGG + chr6_4:79621959-79621978 None:intergenic 55.0%
!! ATGTAGTGGTGGATCGACGG+CGG + chr6_4:79622001-79622020 None:intergenic 55.0%
TGGTCTGCTTGCTTGGGTCT+TGG - chr6_4:79622364-79622383 Msa0998560:three_prime_UTR 55.0%
GGTCTGCTTGCTTGGGTCTT+GGG - chr6_4:79622365-79622384 Msa0998560:three_prime_UTR 55.0%
GTCTGCTTGCTTGGGTCTTG+GGG - chr6_4:79622366-79622385 Msa0998560:three_prime_UTR 55.0%
ATCGTCTGAGCAGAGCCAGT+TGG + chr6_4:79623812-79623831 None:intergenic 55.0%
CTAGTCCATCTGCCCACATG+AGG + chr6_4:79624112-79624131 None:intergenic 55.0%
! TCTTGCACAGTGGGAAGCAC+TGG + chr6_4:79624200-79624219 None:intergenic 55.0%
! TAAGTTCGGCGGTGCTGAGG+CGG + chr6_4:79622035-79622054 None:intergenic 60.0%
! TGGCTCTGCTCAGACGATGC+AGG - chr6_4:79623814-79623833 Msa0998560:intron 60.0%
CATGCAGGTGGTGACTCGTG+AGG - chr6_4:79625340-79625359 Msa0998560:intron 60.0%
!! ACGGCGGTGCGATGGTGGAT+GGG + chr6_4:79621969-79621988 None:intergenic 65.0%
GATGCTGGCGGCGATGGGTG+CGG + chr6_4:79621857-79621876 None:intergenic 70.0%
GCACCCATCGCCGCCAGCAT+CGG - chr6_4:79621856-79621875 Msa0998560:three_prime_UTR 70.0%
GGACCGATGCTGGCGGCGAT+GGG + chr6_4:79621862-79621881 None:intergenic 70.0%
AGGACCGATGCTGGCGGCGA+TGG + chr6_4:79621863-79621882 None:intergenic 70.0%
!! GACGGCGGTGCGATGGTGGA+TGG + chr6_4:79621970-79621989 None:intergenic 70.0%
GGTGGATCGACGGCGGAGAG+CGG + chr6_4:79621994-79622013 None:intergenic 70.0%
TCGACGGCGGAGAGCGGCGA+CGG + chr6_4:79621988-79622007 None:intergenic 75.0%
! GGCGGTGCTGAGGCGGAGAG+AGG + chr6_4:79622028-79622047 None:intergenic 75.0%
! CGGCGACGGCGGTGCGATGG+TGG + chr6_4:79621974-79621993 None:intergenic 80.0%
! GAGCGGCGACGGCGGTGCGA+TGG + chr6_4:79621977-79621996 None:intergenic 80.0%
! ACGGCGGAGAGCGGCGACGG+CGG + chr6_4:79621985-79622004 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 79621817 79626876 79621817 ID=Msa0998560;Name=Msa0998560
chr6_4 mRNA 79621817 79626876 79621817 ID=Msa0998560-mRNA-1;Parent=Msa0998560;Name=Msa0998560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=612|1|1|1|0.14|0.37|8|966|229
chr6_4 exon 79621817 79622090 79621817 ID=Msa0998560-mRNA-1:exon:15072;Parent=Msa0998560-mRNA-1
chr6_4 exon 79622173 79622663 79622173 ID=Msa0998560-mRNA-1:exon:15071;Parent=Msa0998560-mRNA-1
chr6_4 exon 79623089 79623346 79623089 ID=Msa0998560-mRNA-1:exon:15070;Parent=Msa0998560-mRNA-1
chr6_4 exon 79624281 79624598 79624281 ID=Msa0998560-mRNA-1:exon:15069;Parent=Msa0998560-mRNA-1
chr6_4 exon 79624672 79625083 79624672 ID=Msa0998560-mRNA-1:exon:15068;Parent=Msa0998560-mRNA-1
chr6_4 exon 79625759 79625874 79625759 ID=Msa0998560-mRNA-1:exon:15067;Parent=Msa0998560-mRNA-1
chr6_4 exon 79626405 79626507 79626405 ID=Msa0998560-mRNA-1:exon:15066;Parent=Msa0998560-mRNA-1
chr6_4 exon 79626581 79626876 79626581 ID=Msa0998560-mRNA-1:exon:15065;Parent=Msa0998560-mRNA-1
chr6_4 five_prime_UTR 79626581 79626876 79626581 ID=Msa0998560-mRNA-1:five_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 five_prime_UTR 79626405 79626507 79626405 ID=Msa0998560-mRNA-1:five_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 five_prime_UTR 79625759 79625874 79625759 ID=Msa0998560-mRNA-1:five_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 five_prime_UTR 79624987 79625083 79624987 ID=Msa0998560-mRNA-1:five_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 CDS 79624672 79624986 79624672 ID=Msa0998560-mRNA-1:cds;Parent=Msa0998560-mRNA-1
chr6_4 CDS 79624281 79624598 79624281 ID=Msa0998560-mRNA-1:cds;Parent=Msa0998560-mRNA-1
chr6_4 CDS 79623290 79623346 79623290 ID=Msa0998560-mRNA-1:cds;Parent=Msa0998560-mRNA-1
chr6_4 three_prime_UTR 79623089 79623289 79623089 ID=Msa0998560-mRNA-1:three_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 three_prime_UTR 79622173 79622663 79622173 ID=Msa0998560-mRNA-1:three_prime_utr;Parent=Msa0998560-mRNA-1
chr6_4 three_prime_UTR 79621817 79622090 79621817 ID=Msa0998560-mRNA-1:three_prime_utr;Parent=Msa0998560-mRNA-1
Gene Sequence

>Msa0998560

ATGTCTGGACCTTTTATATTTGTTCCGGGCTCATCTGTCTATAGTCATGATGATGATGTTTGTGGGATGTTGGTGCATTCCAATGAAGTGTATTGGCATGATCCAACTGGCTCTGCTCAGACGATGCAGGAGTTTGATCCTCAATGCAGCTCAATTCATTCTCCAATTAACAAGTCACTGTGCAATATTTACCCTGGCCTTCATGGTTTCTTTGTTAATGAATGTGGGGTTCAAGAGGCACCTCCTCTACACAGCTATATTCAAATTTTGCTGCAGTTATCAACCGTCACTCTGCCTTCACAAGCAACGGATAAAATTTTCCAAGTTTTCCTCATGTGGGCAGATGGACTAGAATCTGGTTTGTTGAGTGCTGCTGATGTCGTATATTTGAAAGATTGTCTTTCCAAACTAGAATTTCCAGTGCTTCCCACTGTGCAAGATAAGTGGGTTTCATTGCATCCTTCGTTTGGTCTTGTCTGCTGGTGTGATGATAAAAAGTTGAAAGAAGAATTTAAGCATTCAAATAACCTTGACTTTATTTATTTTGGTGAAGAAACTGAGGTTAATAAAGATATAGTGCTAAAAAAAGTTTCCTTCCTTATGAAAAATTTAGGTATTCCAGCTATCTCAGAGGTGGTGACTCGTGAGGCAATATATTATGGTCTATCTAATTGTAGCTTGAAAGAATAA
Protein sequence

>Msa0998560

MSGPFIFVPGSSVYSHDDDVCGMLVHSNEVYWHDPTGSAQTMQEFDPQCSSIHSPINKSLCNIYPGLHGFFVNECGVQEAPPLHSYIQILLQLSTVTLPSQATDKIFQVFLMWADGLESGLLSAADVVYLKDCLSKLEFPVLPTVQDKWVSLHPSFGLVCWCDDKKLKEEFKHSNNLDFIYFGEETEVNKDIVLKKVSFLMKNLGIPAISEVVTREAIYYGLSNCSLKE*