Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847490 | XP_024640438.1 | 91.353 | 451 | 4 | 1 | 1 | 416 | 1 | 451 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847490 | sp|Q8LJW3|ACR4_ARATH | 68.282 | 454 | 95 | 6 | 9 | 416 | 1 | 451 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847490 | G7JY63 | 91.353 | 451 | 4 | 1 | 1 | 416 | 1 | 451 | 0.0 | 833 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0769300 | Msa0847490 | 0.810267 | 1.254843e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847490 | MtrunA17_Chr5g0420221 | 91.353 | 451 | 4 | 1 | 1 | 416 | 1 | 451 | 0.0 | 833 |
| Msa0847490 | MtrunA17_Chr7g0224571 | 54.299 | 442 | 160 | 5 | 17 | 416 | 1 | 442 | 2.51e-163 | 466 |
| Msa0847490 | MtrunA17_Chr7g0222461 | 51.885 | 451 | 169 | 6 | 11 | 416 | 4 | 451 | 5.91e-146 | 422 |
| Msa0847490 | MtrunA17_Chr3g0125661 | 50.120 | 415 | 159 | 6 | 16 | 383 | 8 | 421 | 2.78e-128 | 377 |
| Msa0847490 | MtrunA17_Chr1g0159541 | 48.081 | 443 | 174 | 8 | 16 | 402 | 8 | 450 | 2.04e-127 | 375 |
| Msa0847490 | MtrunA17_Chr4g0056741 | 47.511 | 442 | 180 | 5 | 19 | 416 | 8 | 441 | 1.11e-126 | 373 |
| Msa0847490 | MtrunA17_Chr5g0398581 | 46.154 | 442 | 186 | 5 | 19 | 416 | 8 | 441 | 1.69e-120 | 357 |
| Msa0847490 | MtrunA17_Chr5g0400941 | 42.043 | 421 | 182 | 7 | 17 | 376 | 9 | 428 | 1.25e-99 | 305 |
| Msa0847490 | MtrunA17_Chr4g0054261 | 38.444 | 450 | 203 | 9 | 2 | 383 | 14 | 457 | 4.33e-96 | 296 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847490 | AT1G69040.2 | 68.053 | 457 | 97 | 6 | 6 | 416 | 2 | 455 | 0.0 | 599 |
| Msa0847490 | AT1G69040.1 | 68.282 | 454 | 95 | 6 | 9 | 416 | 1 | 451 | 0.0 | 597 |
| Msa0847490 | AT2G03730.2 | 62.445 | 458 | 120 | 8 | 7 | 414 | 1 | 456 | 0.0 | 536 |
| Msa0847490 | AT2G03730.1 | 62.445 | 458 | 120 | 8 | 7 | 414 | 1 | 456 | 0.0 | 536 |
| Msa0847490 | AT3G01990.7 | 58.779 | 393 | 123 | 4 | 18 | 373 | 17 | 407 | 8.60e-153 | 440 |
| Msa0847490 | AT3G01990.5 | 58.779 | 393 | 123 | 4 | 18 | 373 | 17 | 407 | 8.60e-153 | 440 |
| Msa0847490 | AT3G01990.10 | 58.779 | 393 | 123 | 4 | 18 | 373 | 3 | 393 | 1.44e-152 | 439 |
| Msa0847490 | AT3G01990.1 | 58.779 | 393 | 123 | 4 | 18 | 373 | 3 | 393 | 1.44e-152 | 439 |
| Msa0847490 | AT3G01990.6 | 58.779 | 393 | 123 | 4 | 18 | 373 | 17 | 407 | 1.50e-152 | 439 |
| Msa0847490 | AT3G01990.11 | 58.779 | 393 | 123 | 4 | 18 | 373 | 3 | 393 | 2.07e-152 | 438 |
| Msa0847490 | AT1G76990.4 | 51.724 | 406 | 152 | 4 | 16 | 377 | 8 | 413 | 2.68e-132 | 388 |
| Msa0847490 | AT1G76990.5 | 51.724 | 406 | 152 | 4 | 16 | 377 | 8 | 413 | 2.68e-132 | 388 |
| Msa0847490 | AT1G76990.2 | 51.724 | 406 | 152 | 4 | 16 | 377 | 8 | 413 | 2.68e-132 | 388 |
| Msa0847490 | AT1G76990.3 | 51.724 | 406 | 152 | 4 | 16 | 377 | 8 | 413 | 2.68e-132 | 388 |
| Msa0847490 | AT1G76990.1 | 51.724 | 406 | 152 | 4 | 16 | 377 | 8 | 413 | 2.68e-132 | 388 |
| Msa0847490 | AT3G01990.3 | 64.828 | 290 | 98 | 3 | 18 | 305 | 17 | 304 | 1.03e-127 | 371 |
| Msa0847490 | AT3G01990.8 | 64.828 | 290 | 98 | 3 | 18 | 305 | 3 | 290 | 1.46e-127 | 370 |
| Msa0847490 | AT3G01990.4 | 64.828 | 290 | 98 | 3 | 18 | 305 | 17 | 304 | 2.69e-127 | 371 |
| Msa0847490 | AT3G01990.2 | 64.828 | 290 | 98 | 3 | 18 | 305 | 17 | 304 | 3.07e-127 | 371 |
| Msa0847490 | AT3G01990.9 | 64.828 | 290 | 98 | 3 | 18 | 305 | 3 | 290 | 4.26e-127 | 370 |
| Msa0847490 | AT1G12420.1 | 46.380 | 442 | 185 | 8 | 19 | 416 | 8 | 441 | 9.73e-118 | 350 |
| Msa0847490 | AT4G22780.1 | 44.469 | 452 | 185 | 9 | 19 | 415 | 8 | 448 | 3.38e-111 | 334 |
| Msa0847490 | AT4G22780.1 | 30.233 | 172 | 100 | 3 | 13 | 179 | 214 | 370 | 1.60e-12 | 69.3 |
| Msa0847490 | AT4G22780.2 | 44.469 | 452 | 185 | 9 | 19 | 415 | 8 | 448 | 3.38e-111 | 334 |
| Msa0847490 | AT4G22780.2 | 30.233 | 172 | 100 | 3 | 13 | 179 | 214 | 370 | 1.60e-12 | 69.3 |
| Msa0847490 | AT5G25320.1 | 38.780 | 459 | 202 | 9 | 16 | 395 | 8 | 466 | 1.43e-100 | 308 |
| Msa0847490 | AT5G25320.3 | 38.642 | 427 | 185 | 7 | 46 | 395 | 1 | 427 | 1.58e-94 | 291 |
| Msa0847490 | AT5G65890.1 | 37.421 | 473 | 196 | 10 | 9 | 396 | 2 | 459 | 1.19e-92 | 287 |
| Msa0847490 | AT5G65890.3 | 37.421 | 473 | 196 | 10 | 9 | 396 | 2 | 459 | 1.19e-92 | 287 |
| Msa0847490 | AT1G12420.2 | 42.175 | 377 | 166 | 8 | 84 | 416 | 1 | 369 | 1.34e-82 | 258 |
| Msa0847490 | AT5G25320.2 | 40.483 | 331 | 156 | 7 | 16 | 305 | 8 | 338 | 4.46e-77 | 244 |
| Msa0847490 | AT5G65890.4 | 36.627 | 415 | 177 | 10 | 60 | 396 | 1 | 407 | 5.94e-73 | 235 |
| Msa0847490 | AT5G65890.2 | 36.627 | 415 | 177 | 10 | 60 | 396 | 1 | 407 | 5.94e-73 | 235 |
| Msa0847490 | AT5G65890.5 | 35.015 | 337 | 141 | 8 | 130 | 396 | 17 | 345 | 7.76e-52 | 178 |
Find 111 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5_4:-29632849 | Msa0847490:CDS |
| CCCATTATAGTTCTTGATTA+AGG | 0.196626 | 5_4:+29634207 | None:intergenic |
| CTCCAAATGCCACTGTTATA+AGG | 0.222940 | 5_4:-29633245 | Msa0847490:CDS |
| TTCTATGTTCGTGGAGCTTC+TGG | 0.238146 | 5_4:-29631130 | Msa0847490:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5_4:+29632864 | None:intergenic |
| TCCTTAATCAAGAACTATAA+TGG | 0.259593 | 5_4:-29634208 | Msa0847490:exon |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5_4:-29633273 | Msa0847490:intron |
| GGAAGTGTGACTTTAGTTTC+AGG | 0.297553 | 5_4:-29630863 | Msa0847490:three_prime_UTR |
| CCACACAGCAATAGAGCTTA+TGG | 0.298609 | 5_4:-29632647 | Msa0847490:CDS |
| TCTCAGAAGCTTGACCCTTT+AGG | 0.298683 | 5_4:-29630818 | Msa0847490:three_prime_UTR |
| AAAGATTTGGAGATGCAAAA+AGG | 0.301210 | 5_4:-29630895 | Msa0847490:three_prime_UTR |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5_4:-29633008 | Msa0847490:CDS |
| TATTGTACAGTTGAAAGATT+TGG | 0.322364 | 5_4:-29630908 | Msa0847490:three_prime_UTR |
| CATTCACTATGTTGCATTTG+AGG | 0.340042 | 5_4:+29632575 | None:intergenic |
| GAATCTTGAGGTACAGATTC+AGG | 0.344720 | 5_4:+29631031 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5_4:+29631078 | None:intergenic |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5_4:-29632354 | Msa0847490:CDS |
| CGAGGGGCCACAAGCATATC+AGG | 0.358239 | 5_4:-29632143 | Msa0847490:intron |
| CATTTGTATATATACTCATT+TGG | 0.371110 | 5_4:-29630644 | Msa0847490:three_prime_UTR |
| GTAGTTGGAAAGCAGGATTC+AGG | 0.372324 | 5_4:+29632703 | None:intergenic |
| TAGGGTAAAATTTCCTAGAT+TGG | 0.373854 | 5_4:+29634243 | None:intergenic |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5_4:+29632613 | None:intergenic |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5_4:+29631007 | None:intergenic |
| TTGATTAAGGATTGATGAAA+TGG | 0.382296 | 5_4:+29634220 | None:intergenic |
| ACCCTTATAACAGTGGCATT+TGG | 0.386153 | 5_4:+29633243 | None:intergenic |
| TCCAAATGCCACTGTTATAA+GGG | 0.388624 | 5_4:-29633244 | Msa0847490:intron |
| AGAAAGAACCGAACCAATCT+AGG | 0.389030 | 5_4:-29634256 | Msa0847490:five_prime_UTR |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5_4:-29632246 | Msa0847490:CDS |
| ACAACCAAACACTTCCTAAA+GGG | 0.402715 | 5_4:+29630804 | None:intergenic |
| TACGTGTTACGTTCGATAAT+AGG | 0.407166 | 5_4:+29631224 | None:intergenic |
| TTGACCCTTTAGGAAGTGTT+TGG | 0.410378 | 5_4:-29630808 | Msa0847490:three_prime_UTR |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5_4:-29632353 | Msa0847490:CDS |
| CCTTAATCAAGAACTATAAT+GGG | 0.419800 | 5_4:-29634207 | Msa0847490:intron |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5_4:-29631093 | Msa0847490:CDS |
| GTTAACACTTTCTATGTTCG+TGG | 0.421080 | 5_4:-29631139 | Msa0847490:CDS |
| ACATAGTGAATGCGGAGGTT+TGG | 0.430916 | 5_4:-29632564 | Msa0847490:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5_4:-29631004 | Msa0847490:CDS |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5_4:-29632245 | Msa0847490:CDS |
| TAAAATTTCCTAGATTGGTT+CGG | 0.435370 | 5_4:+29634248 | None:intergenic |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5_4:-29632435 | Msa0847490:CDS |
| TTTCAAAGTTTACACAATCA+AGG | 0.438775 | 5_4:+29630681 | None:intergenic |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5_4:-29631082 | Msa0847490:CDS |
| CCTTGGATCCAATCGTTAGT+TGG | 0.442721 | 5_4:-29630726 | Msa0847490:three_prime_UTR |
| TATTTATCGATTTAGTCTCT+TGG | 0.458287 | 5_4:-29632727 | Msa0847490:intron |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5_4:-29632442 | Msa0847490:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5_4:-29631058 | Msa0847490:CDS |
| TCATTTCTCCAACTAACGAT+TGG | 0.461480 | 5_4:+29630718 | None:intergenic |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5_4:-29633015 | Msa0847490:CDS |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5_4:+29632688 | None:intergenic |
| TACAACCAAACACTTCCTAA+AGG | 0.481143 | 5_4:+29630803 | None:intergenic |
| CATGTGACCGACGAGGAAAC+AGG | 0.483221 | 5_4:-29632511 | Msa0847490:CDS |
| CTATTCTCAGTCTCATTACA+TGG | 0.487826 | 5_4:-29633425 | Msa0847490:CDS |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5_4:-29632381 | Msa0847490:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5_4:-29631059 | Msa0847490:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5_4:-29633041 | Msa0847490:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5_4:-29632188 | Msa0847490:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5_4:+29632217 | None:intergenic |
| TAGAGCTTATGGGAAGTGAT+AGG | 0.500002 | 5_4:-29632636 | Msa0847490:CDS |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5_4:-29631192 | Msa0847490:CDS |
| GAAGTGTGACTTTAGTTTCA+GGG | 0.500752 | 5_4:-29630862 | Msa0847490:three_prime_UTR |
| CAGTTCACAACATCAACATT+TGG | 0.501696 | 5_4:+29632286 | None:intergenic |
| TCTCATAGTAGTTGGAAAGC+AGG | 0.503054 | 5_4:+29632696 | None:intergenic |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5_4:-29633022 | Msa0847490:CDS |
| CGATAATAGGCCGACTCTGT+CGG | 0.506054 | 5_4:+29631237 | None:intergenic |
| AGGGCAGAAGTAACAACAAA+AGG | 0.506549 | 5_4:-29631172 | Msa0847490:CDS |
| TGTTGTGAACTGGTCTGATA+AGG | 0.506598 | 5_4:-29632275 | Msa0847490:CDS |
| TTAAGGATTGATGAAATGGT+AGG | 0.510582 | 5_4:+29634224 | None:intergenic |
| CACACAGCAATAGAGCTTAT+GGG | 0.511438 | 5_4:-29632646 | Msa0847490:CDS |
| GCAGAGGCTTTCACTAATCA+AGG | 0.514389 | 5_4:-29632470 | Msa0847490:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5_4:-29632878 | Msa0847490:CDS |
| ATCGTTAGTTGGAGAAATGA+AGG | 0.524820 | 5_4:-29630715 | Msa0847490:three_prime_UTR |
| AAGGTTAAAGCAAGCATAAG+AGG | 0.532533 | 5_4:+29630767 | None:intergenic |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5_4:-29632448 | Msa0847490:CDS |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5_4:-29633019 | Msa0847490:CDS |
| TGACTTTAGTTTCAGGGAGT+AGG | 0.541199 | 5_4:-29630856 | Msa0847490:three_prime_UTR |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5_4:-29632240 | Msa0847490:CDS |
| CCAACTAACGATTGGATCCA+AGG | 0.544885 | 5_4:+29630726 | None:intergenic |
| CAAATGTTGATGTTGTGAAC+TGG | 0.551926 | 5_4:-29632285 | Msa0847490:CDS |
| AGCAGAACCTGTTTCCTCGT+CGG | 0.554657 | 5_4:+29632504 | None:intergenic |
| CTGATATGCTTGTGGCCCCT+CGG | 0.564762 | 5_4:+29632144 | None:intergenic |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5_4:-29632445 | Msa0847490:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5_4:-29632427 | Msa0847490:CDS |
| TAAGGATTGATGAAATGGTA+GGG | 0.576796 | 5_4:+29634225 | None:intergenic |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5_4:-29632688 | Msa0847490:CDS |
| TCAGAAGAATGAACCCTCCA+AGG | 0.582538 | 5_4:-29633381 | Msa0847490:intron |
| CATGCTAATATTGATGCCGA+GGG | 0.584102 | 5_4:-29632160 | Msa0847490:CDS |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5_4:-29632671 | Msa0847490:CDS |
| TCATGCTAATATTGATGCCG+AGG | 0.598549 | 5_4:-29632161 | Msa0847490:CDS |
| TATAACAGTGGCATTTGGAG+AGG | 0.614763 | 5_4:+29633248 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.618140 | 5_4:-29633004 | Msa0847490:intron |
| CTTATGGGAAGTGATAGGCC+AGG | 0.625341 | 5_4:-29632631 | Msa0847490:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5_4:-29631191 | Msa0847490:CDS |
| TGATGAGATTTAGATCAGTG+AGG | 0.629185 | 5_4:+29633050 | None:intergenic |
| CTCTGCACCACCGACAGAGT+CGG | 0.631498 | 5_4:-29631247 | Msa0847490:CDS |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5_4:-29633097 | Msa0847490:CDS |
| TAATAGGCCGACTCTGTCGG+TGG | 0.637822 | 5_4:+29631240 | None:intergenic |
| TGTCTATATGAGATCCCAGT+GGG | 0.639963 | 5_4:-29634419 | Msa0847490:five_prime_UTR |
| GCAGAAGTAACAACAAAAGG+AGG | 0.645200 | 5_4:-29631169 | Msa0847490:CDS |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5_4:+29632136 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5_4:-29632870 | Msa0847490:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5_4:+29631185 | None:intergenic |
| TTGTTGTTACAAAGAAACAG+TGG | 0.654042 | 5_4:+29634320 | None:intergenic |
| CCATAAGCTCTATTGCTGTG+TGG | 0.654498 | 5_4:+29632647 | None:intergenic |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5_4:+29633236 | None:intergenic |
| CAAATGCAACATAGTGAATG+CGG | 0.668006 | 5_4:-29632572 | Msa0847490:CDS |
| CTGCTATAACTGACTCGCAG+AGG | 0.675338 | 5_4:-29632486 | Msa0847490:CDS |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5_4:+29631019 | None:intergenic |
| ATGCAACATAGTGAATGCGG+AGG | 0.703276 | 5_4:-29632569 | Msa0847490:CDS |
| AGTGATGCATGTGACCGACG+AGG | 0.724710 | 5_4:-29632518 | Msa0847490:CDS |
| ATGCTAATATTGATGCCGAG+GGG | 0.728802 | 5_4:-29632159 | Msa0847490:CDS |
| GTGTCTATATGAGATCCCAG+TGG | 0.734748 | 5_4:-29634420 | Msa0847490:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTACTAAAATATTGTTT+AGG | + | chr5_4:29633758-29633777 | None:intergenic | 10.0% |
| !!! | AAATTTTTTGATGTTTTCTA+TGG | - | chr5_4:29631090-29631109 | Msa0847490:CDS | 15.0% |
| !!! | TAAAAAAGCTTATTCTTTTA+TGG | - | chr5_4:29631383-29631402 | Msa0847490:intron | 15.0% |
| !!! | AAAAAAGCTTATTCTTTTAT+GGG | - | chr5_4:29631384-29631403 | Msa0847490:intron | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | - | chr5_4:29632039-29632058 | Msa0847490:intron | 15.0% |
| !!! | AAAGTTAATTTGTATTTTGT+AGG | - | chr5_4:29632069-29632088 | Msa0847490:intron | 15.0% |
| !! | TTTATTTGTAAAGATTAAAG+TGG | + | chr5_4:29633085-29633104 | None:intergenic | 15.0% |
| !! | TTAATCTTTACAAATAAACA+TGG | - | chr5_4:29633087-29633106 | Msa0847490:CDS | 15.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | chr5_4:29633187-29633206 | Msa0847490:intron | 15.0% |
| !!! | CACATGTTATTTAAAATAAA+GGG | + | chr5_4:29633618-29633637 | None:intergenic | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | + | chr5_4:29633619-29633638 | None:intergenic | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | chr5_4:29633904-29633923 | Msa0847490:intron | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | chr5_4:29633905-29633924 | Msa0847490:intron | 15.0% |
| !! | AAAACAAGAACAAAAACAAA+AGG | + | chr5_4:29631157-29631176 | None:intergenic | 20.0% |
| !!! | TTCTTGTTTTTTTGTTTCTT+TGG | - | chr5_4:29631167-29631186 | Msa0847490:CDS | 20.0% |
| !! | TTATTCATCTTCTTTACAAT+TGG | - | chr5_4:29631443-29631462 | Msa0847490:intron | 20.0% |
| !! | ACATATAATAGGATAATGAT+GGG | + | chr5_4:29631591-29631610 | None:intergenic | 20.0% |
| !! | TACATATAATAGGATAATGA+TGG | + | chr5_4:29631592-29631611 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTATGTTTTGAT+TGG | - | chr5_4:29631679-29631698 | Msa0847490:intron | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | - | chr5_4:29632250-29632269 | Msa0847490:CDS | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | - | chr5_4:29632251-29632270 | Msa0847490:CDS | 20.0% |
| !!! | AAGTTTGATTTTTTATGTTC+TGG | - | chr5_4:29632277-29632296 | Msa0847490:CDS | 20.0% |
| !! | ACATAAATCACTAAATTAAG+TGG | + | chr5_4:29633479-29633498 | None:intergenic | 20.0% |
| !! | TAAGAATAGATTATCTAACA+TGG | + | chr5_4:29633565-29633584 | None:intergenic | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | chr5_4:29633811-29633830 | Msa0847490:intron | 20.0% |
| !! | CATTTGTATATATACTCATT+TGG | - | chr5_4:29634544-29634563 | Msa0847490:five_prime_UTR | 20.0% |
| ! | AAAAATAAAAACAACCCACT+GGG | + | chr5_4:29630786-29630805 | None:intergenic | 25.0% |
| ! | AAAAAATAAAAACAACCCAC+TGG | + | chr5_4:29630787-29630806 | None:intergenic | 25.0% |
| !! | TAAAATTTCCTAGATTGGTT+CGG | + | chr5_4:29630943-29630962 | None:intergenic | 25.0% |
| ! | TTGATTAAGGATTGATGAAA+TGG | + | chr5_4:29630971-29630990 | None:intergenic | 25.0% |
| ! | TCCTTAATCAAGAACTATAA+TGG | - | chr5_4:29630980-29630999 | Msa0847490:CDS | 25.0% |
| ! | CCTTAATCAAGAACTATAAT+GGG | - | chr5_4:29630981-29631000 | Msa0847490:CDS | 25.0% |
| !! | TTTCTATGGTTTTTGTCTTT+TGG | - | chr5_4:29631104-29631123 | Msa0847490:CDS | 25.0% |
| !! | TTCTATGGTTTTTGTCTTTT+GGG | - | chr5_4:29631105-29631124 | Msa0847490:CDS | 25.0% |
| !!! | GTTTTTTTGTTTCTTTGGTT+TGG | - | chr5_4:29631172-29631191 | Msa0847490:CDS | 25.0% |
| ! | TGTGTTTAGTTAGCAAAATA+TGG | - | chr5_4:29631337-29631356 | Msa0847490:intron | 25.0% |
| !! | CTTATTCTTTTATGGGTTTT+TGG | - | chr5_4:29631391-29631410 | Msa0847490:intron | 25.0% |
| !! | AGAGAAAAAGAGGAATATTT+TGG | + | chr5_4:29631504-29631523 | None:intergenic | 25.0% |
| !!! | TACTAGCTTTTGATTTTCAT+TGG | - | chr5_4:29631648-29631667 | Msa0847490:intron | 25.0% |
| ! | AAAAAAATTAGTACCTTGGA+GGG | + | chr5_4:29631823-29631842 | None:intergenic | 25.0% |
| ! | ATGCAAAAAAATTAGTACCT+TGG | + | chr5_4:29631827-29631846 | None:intergenic | 25.0% |
| ! | AAATCAAGTAGAAAATGATG+AGG | + | chr5_4:29631890-29631909 | None:intergenic | 25.0% |
| !!! | TCTACTTGATTTGTTTTTTC+AGG | - | chr5_4:29631898-29631917 | Msa0847490:intron | 25.0% |
| !!! | CTACTTGATTTGTTTTTTCA+GGG | - | chr5_4:29631899-29631918 | Msa0847490:intron | 25.0% |
| !!! | TGCTGTGATTTATGTTTTTA+TGG | - | chr5_4:29632004-29632023 | Msa0847490:intron | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | chr5_4:29632147-29632166 | Msa0847490:CDS | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | - | chr5_4:29632252-29632271 | Msa0847490:CDS | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | - | chr5_4:29632354-29632373 | Msa0847490:CDS | 25.0% |
| !!! | TATTTATCGATTTAGTCTCT+TGG | - | chr5_4:29632461-29632480 | Msa0847490:CDS | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | chr5_4:29632943-29632962 | Msa0847490:intron | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | chr5_4:29633212-29633231 | Msa0847490:intron | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | chr5_4:29633213-29633232 | Msa0847490:intron | 25.0% |
| ! | TGTTAGTACTTAGTGATATT+TGG | - | chr5_4:29633327-29633346 | Msa0847490:intron | 25.0% |
| !! | TGTAGCTTTTGTTAAAATCA+CGG | + | chr5_4:29633388-29633407 | None:intergenic | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | + | chr5_4:29633515-29633534 | None:intergenic | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | chr5_4:29633516-29633535 | None:intergenic | 25.0% |
| ! | ATTATCTAACATGGAAAAGT+AGG | + | chr5_4:29633556-29633575 | None:intergenic | 25.0% |
| !! | TTATTTAAAATAAAGGGTCG+TGG | + | chr5_4:29633612-29633631 | None:intergenic | 25.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | + | chr5_4:29633703-29633722 | None:intergenic | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | chr5_4:29633819-29633838 | Msa0847490:intron | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | - | chr5_4:29634129-29634148 | Msa0847490:intron | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | - | chr5_4:29634130-29634149 | Msa0847490:intron | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | - | chr5_4:29634217-29634236 | Msa0847490:five_prime_UTR | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | - | chr5_4:29634222-29634241 | Msa0847490:five_prime_UTR | 25.0% |
| ! | TATTGTACAGTTGAAAGATT+TGG | - | chr5_4:29634280-29634299 | Msa0847490:five_prime_UTR | 25.0% |
| ! | GTGATTAGTGAAAAACTAAA+AGG | + | chr5_4:29634443-29634462 | None:intergenic | 25.0% |
| ! | TTTCAAAGTTTACACAATCA+AGG | + | chr5_4:29634510-29634529 | None:intergenic | 25.0% |
| ! | TTGTTGTTACAAAGAAACAG+TGG | + | chr5_4:29630871-29630890 | None:intergenic | 30.0% |
| TAGGGTAAAATTTCCTAGAT+TGG | + | chr5_4:29630948-29630967 | None:intergenic | 30.0% | |
| TAAGGATTGATGAAATGGTA+GGG | + | chr5_4:29630966-29630985 | None:intergenic | 30.0% | |
| TTAAGGATTGATGAAATGGT+AGG | + | chr5_4:29630967-29630986 | None:intergenic | 30.0% | |
| CCCATTATAGTTCTTGATTA+AGG | + | chr5_4:29630984-29631003 | None:intergenic | 30.0% | |
| GTTCTTAGATTTCTGTTTCA+TGG | - | chr5_4:29631053-29631072 | Msa0847490:CDS | 30.0% | |
| GGTTTGGAAATTTAGATACA+AGG | - | chr5_4:29631188-29631207 | Msa0847490:CDS | 30.0% | |
| CAATTTGTGTTACCTAATTG+AGG | + | chr5_4:29631231-29631250 | None:intergenic | 30.0% | |
| !!! | TTTTGGCTTTCTTCAATAAG+TGG | - | chr5_4:29631408-29631427 | Msa0847490:intron | 30.0% |
| !!! | AAAGAGGAATATTTTGGCTT+GGG | + | chr5_4:29631498-29631517 | None:intergenic | 30.0% |
| !!! | AAAAGAGGAATATTTTGGCT+TGG | + | chr5_4:29631499-29631518 | None:intergenic | 30.0% |
| !! | AATAGGATAATGATGGGTTA+AGG | + | chr5_4:29631585-29631604 | None:intergenic | 30.0% |
| CAAAAAAATTAGTACCTTGG+AGG | + | chr5_4:29631824-29631843 | None:intergenic | 30.0% | |
| TTCAGGGTTGTAATTGATAA+TGG | - | chr5_4:29631915-29631934 | Msa0847490:intron | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | chr5_4:29631955-29631974 | None:intergenic | 30.0% | |
| ATCACAGCATACTCAAAAAA+AGG | + | chr5_4:29631993-29632012 | None:intergenic | 30.0% | |
| ATACATACTTAGCGAAAAAG+TGG | + | chr5_4:29632222-29632241 | None:intergenic | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | chr5_4:29632310-29632329 | Msa0847490:CDS | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | + | chr5_4:29632437-29632456 | None:intergenic | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | chr5_4:29632834-29632853 | Msa0847490:intron | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | chr5_4:29632835-29632854 | Msa0847490:CDS | 30.0% |
| CTGTTGTTACTATTGAATGT+AGG | - | chr5_4:29632942-29632961 | Msa0847490:intron | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | chr5_4:29632948-29632967 | Msa0847490:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | chr5_4:29633000-29633019 | Msa0847490:intron | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | + | chr5_4:29633055-29633074 | None:intergenic | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | - | chr5_4:29633157-29633176 | Msa0847490:intron | 30.0% | |
| ! | TTTCTGCATCTGATTTTACA+GGG | + | chr5_4:29633241-29633260 | None:intergenic | 30.0% |
| GTACTTAGTGATATTTGGAT+TGG | - | chr5_4:29633332-29633351 | Msa0847490:intron | 30.0% | |
| CAGTAAATTTGTCAGAATCA+CGG | - | chr5_4:29633355-29633374 | Msa0847490:intron | 30.0% | |
| AATCTTGCTAGTTGTGATAA+TGG | - | chr5_4:29633641-29633660 | Msa0847490:intron | 30.0% | |
| TGAACTTAACCACAATTTGT+TGG | - | chr5_4:29633722-29633741 | Msa0847490:intron | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | - | chr5_4:29634095-29634114 | Msa0847490:intron | 30.0% | |
| ! | CTAAAGATTGATGATCTTGT+AGG | + | chr5_4:29634184-29634203 | None:intergenic | 30.0% |
| ACAAGATCATCAATCTTTAG+TGG | - | chr5_4:29634184-29634203 | Msa0847490:intron | 30.0% | |
| AAAGATTTGGAGATGCAAAA+AGG | - | chr5_4:29634293-29634312 | Msa0847490:five_prime_UTR | 30.0% | |
| AAGATTTGGAGATGCAAAAA+GGG | - | chr5_4:29634294-29634313 | Msa0847490:five_prime_UTR | 30.0% | |
| ! | TAGTTTTTCACTAATCACCT+TGG | - | chr5_4:29634445-29634464 | Msa0847490:five_prime_UTR | 30.0% |
| GGAGAATCATTCACACAAAA+GGG | + | chr5_4:29631136-29631155 | None:intergenic | 35.0% | |
| AGGAGAATCATTCACACAAA+AGG | + | chr5_4:29631137-29631156 | None:intergenic | 35.0% | |
| GTTTCGTTAATGCCTCAATT+AGG | - | chr5_4:29631216-29631235 | Msa0847490:CDS | 35.0% | |
| TTTCTCTCTCACTTTCTTTC+TGG | - | chr5_4:29631306-29631325 | Msa0847490:intron | 35.0% | |
| !!! | TCACTTTCTTTCTGGCTTTT+GGG | - | chr5_4:29631314-29631333 | Msa0847490:intron | 35.0% |
| !! | GACTACAACTTGCTAAACAA+AGG | - | chr5_4:29631556-29631575 | Msa0847490:intron | 35.0% |
| CTATTCTCAGTCTCATTACA+TGG | - | chr5_4:29631763-29631782 | Msa0847490:intron | 35.0% | |
| TCCAAATGCCACTGTTATAA+GGG | - | chr5_4:29631944-29631963 | Msa0847490:intron | 35.0% | |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | chr5_4:29632091-29632110 | Msa0847490:intron | 35.0% |
| TGATGAGATTTAGATCAGTG+AGG | + | chr5_4:29632141-29632160 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | - | chr5_4:29632166-29632185 | Msa0847490:CDS | 35.0% | |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | chr5_4:29632339-29632358 | Msa0847490:CDS | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | chr5_4:29632517-29632536 | Msa0847490:CDS | 35.0% |
| CATTCACTATGTTGCATTTG+AGG | + | chr5_4:29632616-29632635 | None:intergenic | 35.0% | |
| CAAATGCAACATAGTGAATG+CGG | - | chr5_4:29632616-29632635 | Msa0847490:CDS | 35.0% | |
| CAGTTCACAACATCAACATT+TGG | + | chr5_4:29632905-29632924 | None:intergenic | 35.0% | |
| CAAATGTTGATGTTGTGAAC+TGG | - | chr5_4:29632903-29632922 | Msa0847490:intron | 35.0% | |
| TGTACTTTGCTGGGTTTATA+AGG | - | chr5_4:29633145-29633164 | Msa0847490:intron | 35.0% | |
| ! | TTCTGCATCTGATTTTACAG+GGG | + | chr5_4:29633240-29633259 | None:intergenic | 35.0% |
| ! | CTTTCTGCATCTGATTTTAC+AGG | + | chr5_4:29633242-29633261 | None:intergenic | 35.0% |
| TATTGAGAGAAGAGTTTCTG+AGG | - | chr5_4:29633292-29633311 | Msa0847490:intron | 35.0% | |
| ! | AGTGATTTATGTTTTCCTGC+AGG | - | chr5_4:29633487-29633506 | Msa0847490:intron | 35.0% |
| ! | GTGATTTATGTTTTCCTGCA+GGG | - | chr5_4:29633488-29633507 | Msa0847490:intron | 35.0% |
| AACTGCTATTCAACTAACCT+TGG | + | chr5_4:29633668-29633687 | None:intergenic | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | + | chr5_4:29633734-29633753 | None:intergenic | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | chr5_4:29633828-29633847 | Msa0847490:intron | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | chr5_4:29633967-29633986 | None:intergenic | 35.0% | |
| GTTAACACTTTCTATGTTCG+TGG | - | chr5_4:29634049-29634068 | Msa0847490:intron | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | - | chr5_4:29634106-29634125 | Msa0847490:intron | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | + | chr5_4:29634113-29634132 | None:intergenic | 35.0% | |
| ! | GAAGTGTGACTTTAGTTTCA+GGG | - | chr5_4:29634326-29634345 | Msa0847490:five_prime_UTR | 35.0% |
| ACAACCAAACACTTCCTAAA+GGG | + | chr5_4:29634387-29634406 | None:intergenic | 35.0% | |
| TACAACCAAACACTTCCTAA+AGG | + | chr5_4:29634388-29634407 | None:intergenic | 35.0% | |
| AAGGTTAAAGCAAGCATAAG+AGG | + | chr5_4:29634424-29634443 | None:intergenic | 35.0% | |
| TCATTTCTCCAACTAACGAT+TGG | + | chr5_4:29634473-29634492 | None:intergenic | 35.0% | |
| ATCGTTAGTTGGAGAAATGA+AGG | - | chr5_4:29634473-29634492 | Msa0847490:five_prime_UTR | 35.0% | |
| TGTCTATATGAGATCCCAGT+GGG | - | chr5_4:29630769-29630788 | Msa0847490:three_prime_UTR | 40.0% | |
| AGAAAGAACCGAACCAATCT+AGG | - | chr5_4:29630932-29630951 | Msa0847490:exon | 40.0% | |
| !!! | CTCACTTTCTTTCTGGCTTT+TGG | - | chr5_4:29631313-29631332 | Msa0847490:intron | 40.0% |
| GCAGAAAGAGAGAGAAAAAG+AGG | + | chr5_4:29631514-29631533 | None:intergenic | 40.0% | |
| TATAACAGTGGCATTTGGAG+AGG | + | chr5_4:29631943-29631962 | None:intergenic | 40.0% | |
| CTCCAAATGCCACTGTTATA+AGG | - | chr5_4:29631943-29631962 | Msa0847490:intron | 40.0% | |
| ACCCTTATAACAGTGGCATT+TGG | + | chr5_4:29631948-29631967 | None:intergenic | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | - | chr5_4:29632169-29632188 | Msa0847490:CDS | 40.0% | |
| !! | ACATTTCTTCTGATGGTGGA+TGG | - | chr5_4:29632173-29632192 | Msa0847490:CDS | 40.0% |
| AACTGACCAAGATGGAAACA+AGG | - | chr5_4:29632318-29632337 | Msa0847490:CDS | 40.0% | |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | chr5_4:29632327-29632346 | None:intergenic | 40.0% |
| AGAAAGGTGAGTGTCTCATT+TGG | - | chr5_4:29632370-29632389 | Msa0847490:CDS | 40.0% | |
| TCTCATAGTAGTTGGAAAGC+AGG | + | chr5_4:29632495-29632514 | None:intergenic | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | chr5_4:29632503-29632522 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | chr5_4:29632500-29632519 | Msa0847490:CDS | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | - | chr5_4:29632542-29632561 | Msa0847490:CDS | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | - | chr5_4:29632552-29632571 | Msa0847490:CDS | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | chr5_4:29632807-29632826 | Msa0847490:intron | 40.0% | |
| ! | TGTTGTGAACTGGTCTGATA+AGG | - | chr5_4:29632913-29632932 | Msa0847490:intron | 40.0% |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | chr5_4:29632974-29632993 | None:intergenic | 40.0% |
| TCATGCTAATATTGATGCCG+AGG | - | chr5_4:29633027-29633046 | Msa0847490:CDS | 40.0% | |
| CATGCTAATATTGATGCCGA+GGG | - | chr5_4:29633028-29633047 | Msa0847490:CDS | 40.0% | |
| ATGCTAATATTGATGCCGAG+GGG | - | chr5_4:29633029-29633048 | Msa0847490:CDS | 40.0% | |
| ACAGACTTGTGAGATTCCTT+TGG | - | chr5_4:29633112-29633131 | Msa0847490:intron | 40.0% | |
| !! | CTAGTTGTGATAATGGTCCA+AGG | - | chr5_4:29633648-29633667 | Msa0847490:intron | 40.0% |
| AGAATAGCCTCACAGTTACA+AGG | - | chr5_4:29633996-29634015 | Msa0847490:intron | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | - | chr5_4:29633997-29634016 | Msa0847490:intron | 40.0% | |
| AGGGCAGAAGTAACAACAAA+AGG | - | chr5_4:29634016-29634035 | Msa0847490:intron | 40.0% | |
| GCAGAAGTAACAACAAAAGG+AGG | - | chr5_4:29634019-29634038 | Msa0847490:intron | 40.0% | |
| GAATCTTGAGGTACAGATTC+AGG | + | chr5_4:29634160-29634179 | None:intergenic | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | + | chr5_4:29634172-29634191 | None:intergenic | 40.0% | |
| ! | GATGCAAAAAGGGTTAGTAG+AGG | - | chr5_4:29634304-29634323 | Msa0847490:five_prime_UTR | 40.0% |
| ! | GGAAGTGTGACTTTAGTTTC+AGG | - | chr5_4:29634325-29634344 | Msa0847490:five_prime_UTR | 40.0% |
| ! | TGACTTTAGTTTCAGGGAGT+AGG | - | chr5_4:29634332-29634351 | Msa0847490:five_prime_UTR | 40.0% |
| !! | TTGACCCTTTAGGAAGTGTT+TGG | - | chr5_4:29634380-29634399 | Msa0847490:five_prime_UTR | 40.0% |
| GTGTCTATATGAGATCCCAG+TGG | - | chr5_4:29630768-29630787 | Msa0847490:three_prime_UTR | 45.0% | |
| TCAGAAGAATGAACCCTCCA+AGG | - | chr5_4:29631807-29631826 | Msa0847490:intron | 45.0% | |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | chr5_4:29632180-29632199 | Msa0847490:CDS | 45.0% |
| GTAGTTGGAAAGCAGGATTC+AGG | + | chr5_4:29632488-29632507 | None:intergenic | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | + | chr5_4:29632544-29632563 | None:intergenic | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | - | chr5_4:29632541-29632560 | Msa0847490:CDS | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | + | chr5_4:29632578-29632597 | None:intergenic | 45.0% |
| ATGCAACATAGTGAATGCGG+AGG | - | chr5_4:29632619-29632638 | Msa0847490:CDS | 45.0% | |
| ACATAGTGAATGCGGAGGTT+TGG | - | chr5_4:29632624-29632643 | Msa0847490:CDS | 45.0% | |
| GCAGAGGCTTTCACTAATCA+AGG | - | chr5_4:29632718-29632737 | Msa0847490:intron | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | - | chr5_4:29632740-29632759 | Msa0847490:intron | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | - | chr5_4:29632743-29632762 | Msa0847490:intron | 45.0% | |
| GTGAGATTCCTTTGGTTGCT+TGG | - | chr5_4:29633120-29633139 | Msa0847490:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | chr5_4:29633131-29633150 | None:intergenic | 45.0% | |
| TTGCTTGGTCTGTACTTTGC+TGG | - | chr5_4:29633135-29633154 | Msa0847490:intron | 45.0% | |
| TGCTTGGTCTGTACTTTGCT+GGG | - | chr5_4:29633136-29633155 | Msa0847490:intron | 45.0% | |
| !! | AGAGAAGAGTTTCTGAGGTG+AGG | - | chr5_4:29633297-29633316 | Msa0847490:intron | 45.0% |
| !! | GAGAAGAGTTTCTGAGGTGA+GGG | - | chr5_4:29633298-29633317 | Msa0847490:intron | 45.0% |
| TTCTATGTTCGTGGAGCTTC+TGG | - | chr5_4:29634058-29634077 | Msa0847490:intron | 45.0% | |
| TCTCAGAAGCTTGACCCTTT+AGG | - | chr5_4:29634370-29634389 | Msa0847490:five_prime_UTR | 45.0% | |
| CCAACTAACGATTGGATCCA+AGG | + | chr5_4:29634465-29634484 | None:intergenic | 45.0% | |
| CCTTGGATCCAATCGTTAGT+TGG | - | chr5_4:29634462-29634481 | Msa0847490:five_prime_UTR | 45.0% | |
| !! | ATTAAATATATACATATAAT+AGG | + | chr5_4:29631602-29631621 | None:intergenic | 5.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | chr5_4:29632184-29632203 | Msa0847490:CDS | 50.0% |
| CTTATGGGAAGTGATAGGCC+AGG | - | chr5_4:29632557-29632576 | Msa0847490:CDS | 50.0% | |
| AGCAGAACCTGTTTCCTCGT+CGG | + | chr5_4:29632687-29632706 | None:intergenic | 50.0% | |
| !! | CTGCTATAACTGACTCGCAG+AGG | - | chr5_4:29632702-29632721 | Msa0847490:CDS | 50.0% |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | - | chr5_4:29632746-29632765 | Msa0847490:intron | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | chr5_4:29632753-29632772 | Msa0847490:intron | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | chr5_4:29632761-29632780 | Msa0847490:intron | 50.0% |
| ! | CGATAATAGGCCGACTCTGT+CGG | + | chr5_4:29633954-29633973 | None:intergenic | 50.0% |
| CTTCTGCCCTTGTAACTGTG+AGG | + | chr5_4:29634006-29634025 | None:intergenic | 50.0% | |
| AGTGATGCATGTGACCGACG+AGG | - | chr5_4:29632670-29632689 | Msa0847490:CDS | 55.0% | |
| CATGTGACCGACGAGGAAAC+AGG | - | chr5_4:29632677-29632696 | Msa0847490:CDS | 55.0% | |
| CTGATATGCTTGTGGCCCCT+CGG | + | chr5_4:29633047-29633066 | None:intergenic | 55.0% | |
| ACAATGAAGAGGGTCCCTGC+AGG | + | chr5_4:29633505-29633524 | None:intergenic | 55.0% | |
| ! | TAATAGGCCGACTCTGTCGG+TGG | + | chr5_4:29633951-29633970 | None:intergenic | 55.0% |
| CGAGGGGCCACAAGCATATC+AGG | - | chr5_4:29633045-29633064 | Msa0847490:CDS | 60.0% | |
| CTCTGCACCACCGACAGAGT+CGG | - | chr5_4:29633941-29633960 | Msa0847490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 29630635 | 29634575 | 29630635 | ID=Msa0847490;Name=Msa0847490 |
| chr5_4 | mRNA | 29630635 | 29634575 | 29630635 | ID=Msa0847490-mRNA-1;Parent=Msa0847490;Name=Msa0847490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=364|0.83|1|1|1|1|7|314|416 |
| chr5_4 | exon | 29630635 | 29631284 | 29630635 | ID=Msa0847490-mRNA-1:exon:10943;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29632144 | 29632734 | 29632144 | ID=Msa0847490-mRNA-1:exon:10942;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29632835 | 29632902 | 29632835 | ID=Msa0847490-mRNA-1:exon:10941;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29633005 | 29633119 | 29633005 | ID=Msa0847490-mRNA-1:exon:10940;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29633245 | 29633290 | 29633245 | ID=Msa0847490-mRNA-1:exon:10939;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29633382 | 29633472 | 29633382 | ID=Msa0847490-mRNA-1:exon:10938;Parent=Msa0847490-mRNA-1 |
| chr5_4 | exon | 29634208 | 29634575 | 29634208 | ID=Msa0847490-mRNA-1:exon:10937;Parent=Msa0847490-mRNA-1 |
| chr5_4 | five_prime_UTR | 29634212 | 29634575 | 29634212 | ID=Msa0847490-mRNA-1:five_prime_utr;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29634208 | 29634211 | 29634208 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29633382 | 29633472 | 29633382 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29633245 | 29633290 | 29633245 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29633005 | 29633119 | 29633005 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29632835 | 29632902 | 29632835 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29632144 | 29632734 | 29632144 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | CDS | 29630949 | 29631284 | 29630949 | ID=Msa0847490-mRNA-1:cds;Parent=Msa0847490-mRNA-1 |
| chr5_4 | three_prime_UTR | 29630635 | 29630948 | 29630635 | ID=Msa0847490-mRNA-1:three_prime_utr;Parent=Msa0847490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
