Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769300 | XP_024640438.1 | 94.013 | 451 | 4 | 3 | 1 | 428 | 1 | 451 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769300 | sp|Q8LJW3|ACR4_ARATH | 70.485 | 454 | 97 | 8 | 9 | 428 | 1 | 451 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769300 | G7JY63 | 94.013 | 451 | 4 | 3 | 1 | 428 | 1 | 451 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0769300 | 0.813725 | 2.213487e-51 | -8.615850e-47 |
| Msa0001550 | Msa0769300 | -0.823007 | 1.746565e-53 | -8.615850e-47 |
| Msa0030700 | Msa0769300 | 0.817858 | 2.651582e-52 | -8.615850e-47 |
| Msa0054920 | Msa0769300 | 0.812436 | 4.243909e-51 | -8.615850e-47 |
| Msa0078120 | Msa0769300 | 0.806919 | 6.509341e-50 | -8.615850e-47 |
| Msa0094710 | Msa0769300 | 0.803693 | 3.086990e-49 | -8.615850e-47 |
| Msa0115730 | Msa0769300 | 0.813310 | 2.731002e-51 | -8.615850e-47 |
| Msa0608700 | Msa0769300 | 0.810477 | 1.130386e-50 | -8.615850e-47 |
| Msa0641220 | Msa0769300 | 0.803412 | 3.530040e-49 | -8.615850e-47 |
| Msa0649200 | Msa0769300 | 0.827541 | 1.478002e-54 | -8.615850e-47 |
| Msa0674480 | Msa0769300 | 0.809582 | 1.762256e-50 | -8.615850e-47 |
| Msa0727860 | Msa0769300 | 0.843995 | 9.939498e-59 | -8.615850e-47 |
| Msa0733010 | Msa0769300 | 0.861039 | 1.357116e-63 | -8.615850e-47 |
| Msa0734250 | Msa0769300 | 0.817217 | 3.697761e-52 | -8.615850e-47 |
| Msa0769300 | Msa0773990 | 0.852113 | 5.711108e-61 | -8.615850e-47 |
| Msa0769300 | Msa0795750 | 0.802142 | 6.454824e-49 | -8.615850e-47 |
| Msa0769300 | Msa0809940 | 0.801700 | 7.957447e-49 | -8.615850e-47 |
| Msa0769300 | Msa0815970 | 0.803608 | 3.213973e-49 | -8.615850e-47 |
| Msa0769300 | Msa0823540 | 0.803768 | 2.977593e-49 | -8.615850e-47 |
| Msa0769300 | Msa0833530 | 0.832509 | 9.075360e-56 | -8.615850e-47 |
| Msa0769300 | Msa0847490 | 0.810267 | 1.254843e-50 | -8.615850e-47 |
| Msa0769300 | Msa0858070 | 0.806339 | 8.632015e-50 | -8.615850e-47 |
| Msa0769300 | Msa0862620 | 0.809865 | 1.531553e-50 | -8.615850e-47 |
| Msa0769300 | Msa0867010 | 0.802651 | 5.070653e-49 | -8.615850e-47 |
| Msa0769300 | Msa0907710 | 0.800875 | 1.173815e-48 | -8.615850e-47 |
| Msa0769300 | Msa1011250 | 0.805257 | 1.456827e-49 | -8.615850e-47 |
| Msa0769300 | Msa1031460 | 0.803703 | 3.071245e-49 | -8.615850e-47 |
| Msa0769300 | Msa1070540 | 0.800577 | 1.350302e-48 | -8.615850e-47 |
| Msa0769300 | Msa1071180 | -0.862311 | 5.543461e-64 | -8.615850e-47 |
| Msa0769300 | Msa1084640 | 0.800815 | 1.207590e-48 | -8.615850e-47 |
| Msa0769300 | Msa1089450 | 0.808220 | 3.446320e-50 | -8.615850e-47 |
| Msa0769300 | Msa1101240 | 0.802547 | 5.327463e-49 | -8.615850e-47 |
| Msa0769300 | Msa1130060 | 0.850843 | 1.305993e-60 | -8.615850e-47 |
| Msa0769300 | Msa1143370 | -0.803261 | 3.793875e-49 | -8.615850e-47 |
| Msa0769300 | Msa1150960 | 0.810703 | 1.010315e-50 | -8.615850e-47 |
| Msa0769300 | Msa1155170 | -0.816176 | 6.327215e-52 | -8.615850e-47 |
| Msa0769300 | Msa1161810 | 0.801000 | 1.106886e-48 | -8.615850e-47 |
| Msa0769300 | Msa1184120 | 0.819562 | 1.087986e-52 | -8.615850e-47 |
| Msa0769300 | Msa1190100 | -0.804345 | 2.258792e-49 | -8.615850e-47 |
| Msa0769300 | Msa1208990 | 0.806482 | 8.050807e-50 | -8.615850e-47 |
| Msa0769300 | Msa1218450 | 0.800748 | 1.246149e-48 | -8.615850e-47 |
| Msa0769300 | Msa1225860 | -0.833263 | 5.897866e-56 | -8.615850e-47 |
| Msa0769300 | Msa1232700 | 0.808824 | 2.561962e-50 | -8.615850e-47 |
| Msa0769300 | Msa1236110 | -0.807524 | 4.846932e-50 | -8.615850e-47 |
| Msa0769300 | Msa1236160 | -0.800627 | 1.318895e-48 | -8.615850e-47 |
| Msa0769300 | Msa1303070 | 0.824482 | 7.883514e-54 | -8.615850e-47 |
| Msa0769300 | Msa1307560 | 0.812709 | 3.698479e-51 | -8.615850e-47 |
| Msa0769300 | Msa1321550 | 0.803397 | 3.554553e-49 | -8.615850e-47 |
| Msa0769300 | Msa1325410 | -0.857659 | 1.404216e-62 | -8.615850e-47 |
| Msa0769300 | Msa1340200 | 0.835079 | 2.067384e-56 | -8.615850e-47 |
| Msa0769300 | Msa1341840 | 0.802282 | 6.041088e-49 | -8.615850e-47 |
| Msa0769300 | Msa1342380 | 0.809755 | 1.617396e-50 | -8.615850e-47 |
| Msa0769300 | Msa1356600 | -0.817161 | 3.805709e-52 | -8.615850e-47 |
| Msa0769300 | Msa1363820 | -0.832109 | 1.140292e-55 | -8.615850e-47 |
| Msa0769300 | Msa1375610 | -0.825194 | 5.352775e-54 | -8.615850e-47 |
| Msa0769300 | Msa1376550 | -0.818702 | 1.707929e-52 | -8.615850e-47 |
| Msa0769300 | Msa1408110 | 0.833315 | 5.721556e-56 | -8.615850e-47 |
| Msa0769300 | Msa1440310 | 0.824484 | 7.872760e-54 | -8.615850e-47 |
| Msa0769300 | Msa1445910 | -0.809142 | 2.189609e-50 | -8.615850e-47 |
| Msa0769300 | Msa1452710 | 0.802216 | 6.231542e-49 | -8.615850e-47 |
| Msa0769300 | Msa1464090 | 0.828129 | 1.067139e-54 | -8.615850e-47 |
| Msa0144530 | Msa0769300 | 0.809223 | 2.103951e-50 | -8.615850e-47 |
| Msa0168310 | Msa0769300 | 0.815360 | 9.619579e-52 | -8.615850e-47 |
| Msa0189040 | Msa0769300 | 0.800661 | 1.298000e-48 | -8.615850e-47 |
| Msa0189710 | Msa0769300 | 0.830383 | 3.028348e-55 | -8.615850e-47 |
| Msa0217700 | Msa0769300 | 0.808630 | 2.818203e-50 | -8.615850e-47 |
| Msa0225190 | Msa0769300 | -0.808440 | 3.094681e-50 | -8.615850e-47 |
| Msa0232020 | Msa0769300 | 0.833502 | 5.140799e-56 | -8.615850e-47 |
| Msa0232090 | Msa0769300 | 0.847056 | 1.471634e-59 | -8.615850e-47 |
| Msa0237210 | Msa0769300 | 0.818601 | 1.800248e-52 | -8.615850e-47 |
| Msa0380400 | Msa0769300 | -0.802496 | 5.457697e-49 | -8.615850e-47 |
| Msa0380930 | Msa0769300 | 0.801720 | 7.880813e-49 | -8.615850e-47 |
| Msa0476170 | Msa0769300 | -0.833186 | 6.163540e-56 | -8.615850e-47 |
| Msa0240900 | Msa0769300 | 0.827128 | 1.856565e-54 | -8.615850e-47 |
| Msa0244640 | Msa0769300 | 0.809381 | 1.946499e-50 | -8.615850e-47 |
| Msa0257580 | Msa0769300 | 0.814420 | 1.555180e-51 | -8.615850e-47 |
| Msa0271540 | Msa0769300 | 0.802492 | 5.468139e-49 | -8.615850e-47 |
| Msa0274980 | Msa0769300 | 0.819328 | 1.230603e-52 | -8.615850e-47 |
| Msa0300840 | Msa0769300 | 0.814375 | 1.590473e-51 | -8.615850e-47 |
| Msa0310090 | Msa0769300 | 0.832690 | 8.188247e-56 | -8.615850e-47 |
| Msa0315690 | Msa0769300 | 0.823470 | 1.361336e-53 | -8.615850e-47 |
| Msa0317970 | Msa0769300 | 0.813710 | 2.229636e-51 | -8.615850e-47 |
| Msa0319920 | Msa0769300 | 0.803292 | 3.737349e-49 | -8.615850e-47 |
| Msa0338340 | Msa0769300 | 0.818925 | 1.519974e-52 | -8.615850e-47 |
| Msa0501380 | Msa0769300 | 0.822030 | 2.945519e-53 | -8.615850e-47 |
| Msa0523490 | Msa0769300 | -0.839726 | 1.333412e-57 | -8.615850e-47 |
| Msa0537950 | Msa0769300 | 0.824681 | 7.077169e-54 | -8.615850e-47 |
| Msa0538190 | Msa0769300 | 0.833952 | 3.968876e-56 | -8.615850e-47 |
| Msa0555190 | Msa0769300 | 0.829908 | 3.956251e-55 | -8.615850e-47 |
| Msa0559650 | Msa0769300 | -0.827290 | 1.697473e-54 | -8.615850e-47 |
| Msa0576120 | Msa0769300 | -0.817719 | 2.849537e-52 | -8.615850e-47 |
| Msa0583360 | Msa0769300 | -0.825825 | 3.794107e-54 | -8.615850e-47 |
| Msa0594050 | Msa0769300 | 0.821601 | 3.702114e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769300 | MtrunA17_Chr5g0420221 | 94.013 | 451 | 4 | 3 | 1 | 428 | 1 | 451 | 0.0 | 856 |
| Msa0769300 | MtrunA17_Chr7g0224571 | 55.882 | 442 | 165 | 7 | 17 | 428 | 1 | 442 | 8.31e-170 | 483 |
| Msa0769300 | MtrunA17_Chr7g0222461 | 54.545 | 451 | 169 | 8 | 11 | 428 | 4 | 451 | 2.41e-154 | 444 |
| Msa0769300 | MtrunA17_Chr4g0056741 | 49.095 | 442 | 185 | 7 | 19 | 428 | 8 | 441 | 7.98e-133 | 389 |
| Msa0769300 | MtrunA17_Chr3g0125661 | 50.602 | 415 | 169 | 8 | 16 | 395 | 8 | 421 | 1.87e-131 | 386 |
| Msa0769300 | MtrunA17_Chr1g0159541 | 48.758 | 443 | 183 | 10 | 16 | 414 | 8 | 450 | 7.75e-131 | 384 |
| Msa0769300 | MtrunA17_Chr5g0398581 | 47.738 | 442 | 191 | 7 | 19 | 428 | 8 | 441 | 2.44e-126 | 372 |
| Msa0769300 | MtrunA17_Chr5g0400941 | 43.230 | 421 | 189 | 10 | 17 | 388 | 9 | 428 | 2.35e-102 | 313 |
| Msa0769300 | MtrunA17_Chr4g0054261 | 39.333 | 450 | 211 | 12 | 2 | 395 | 14 | 457 | 3.04e-95 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769300 | AT1G69040.2 | 70.241 | 457 | 99 | 8 | 6 | 428 | 2 | 455 | 0.0 | 619 |
| Msa0769300 | AT1G69040.1 | 70.485 | 454 | 97 | 8 | 9 | 428 | 1 | 451 | 0.0 | 617 |
| Msa0769300 | AT2G03730.2 | 64.847 | 458 | 121 | 10 | 7 | 426 | 1 | 456 | 0.0 | 557 |
| Msa0769300 | AT2G03730.1 | 64.847 | 458 | 121 | 10 | 7 | 426 | 1 | 456 | 0.0 | 557 |
| Msa0769300 | AT3G01990.6 | 59.091 | 396 | 129 | 6 | 18 | 385 | 17 | 407 | 1.14e-156 | 450 |
| Msa0769300 | AT3G01990.7 | 59.091 | 396 | 129 | 6 | 18 | 385 | 17 | 407 | 1.41e-156 | 450 |
| Msa0769300 | AT3G01990.5 | 59.091 | 396 | 129 | 6 | 18 | 385 | 17 | 407 | 1.41e-156 | 450 |
| Msa0769300 | AT3G01990.11 | 59.091 | 396 | 129 | 6 | 18 | 385 | 3 | 393 | 1.75e-156 | 449 |
| Msa0769300 | AT3G01990.10 | 59.091 | 396 | 129 | 6 | 18 | 385 | 3 | 393 | 1.87e-156 | 449 |
| Msa0769300 | AT3G01990.1 | 59.091 | 396 | 129 | 6 | 18 | 385 | 3 | 393 | 1.87e-156 | 449 |
| Msa0769300 | AT1G76990.4 | 52.463 | 406 | 161 | 6 | 16 | 389 | 8 | 413 | 1.86e-135 | 397 |
| Msa0769300 | AT1G76990.5 | 52.463 | 406 | 161 | 6 | 16 | 389 | 8 | 413 | 1.86e-135 | 397 |
| Msa0769300 | AT1G76990.2 | 52.463 | 406 | 161 | 6 | 16 | 389 | 8 | 413 | 1.86e-135 | 397 |
| Msa0769300 | AT1G76990.3 | 52.463 | 406 | 161 | 6 | 16 | 389 | 8 | 413 | 1.86e-135 | 397 |
| Msa0769300 | AT1G76990.1 | 52.463 | 406 | 161 | 6 | 16 | 389 | 8 | 413 | 1.86e-135 | 397 |
| Msa0769300 | AT3G01990.4 | 58.160 | 337 | 122 | 6 | 18 | 340 | 17 | 348 | 2.22e-129 | 377 |
| Msa0769300 | AT3G01990.9 | 58.160 | 337 | 122 | 6 | 18 | 340 | 3 | 334 | 4.10e-129 | 376 |
| Msa0769300 | AT3G01990.2 | 58.912 | 331 | 117 | 6 | 18 | 334 | 17 | 342 | 5.87e-129 | 376 |
| Msa0769300 | AT1G12420.1 | 47.865 | 445 | 186 | 10 | 19 | 428 | 8 | 441 | 8.85e-125 | 369 |
| Msa0769300 | AT4G22780.1 | 46.205 | 448 | 195 | 9 | 19 | 427 | 8 | 448 | 2.49e-118 | 353 |
| Msa0769300 | AT4G22780.2 | 46.205 | 448 | 195 | 9 | 19 | 427 | 8 | 448 | 2.49e-118 | 353 |
| Msa0769300 | AT3G01990.3 | 61.433 | 293 | 95 | 5 | 18 | 297 | 17 | 304 | 6.27e-117 | 344 |
| Msa0769300 | AT3G01990.8 | 61.433 | 293 | 95 | 5 | 18 | 297 | 3 | 290 | 8.63e-117 | 343 |
| Msa0769300 | AT5G25320.1 | 40.959 | 459 | 204 | 11 | 16 | 407 | 8 | 466 | 2.23e-108 | 329 |
| Msa0769300 | AT5G25320.3 | 40.984 | 427 | 187 | 9 | 46 | 407 | 1 | 427 | 2.19e-102 | 312 |
| Msa0769300 | AT5G65890.1 | 38.478 | 473 | 203 | 12 | 9 | 408 | 2 | 459 | 4.91e-97 | 299 |
| Msa0769300 | AT5G65890.3 | 38.478 | 473 | 203 | 12 | 9 | 408 | 2 | 459 | 4.91e-97 | 299 |
| Msa0769300 | AT1G12420.2 | 43.947 | 380 | 167 | 10 | 84 | 428 | 1 | 369 | 6.47e-90 | 277 |
| Msa0769300 | AT5G25320.2 | 40.934 | 364 | 165 | 10 | 16 | 329 | 8 | 371 | 2.03e-82 | 258 |
| Msa0769300 | AT5G65890.4 | 37.831 | 415 | 184 | 12 | 60 | 408 | 1 | 407 | 2.59e-77 | 246 |
| Msa0769300 | AT5G65890.2 | 37.831 | 415 | 184 | 12 | 60 | 408 | 1 | 407 | 2.59e-77 | 246 |
| Msa0769300 | AT5G65890.5 | 36.499 | 337 | 148 | 10 | 130 | 408 | 17 | 345 | 2.59e-56 | 190 |
Find 106 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5_2:-37135079 | Msa0769300:CDS |
| CCCATTATAGTTCTTGATTA+AGG | 0.196626 | 5_2:+37136461 | None:intergenic |
| CTCCAAATGCCACTGTTATA+AGG | 0.222940 | 5_2:-37135475 | Msa0769300:CDS |
| TTCTATGTTCGTGGAGCTTC+TGG | 0.238146 | 5_2:-37133359 | Msa0769300:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5_2:+37135094 | None:intergenic |
| TCCTTAATCAAGAACTATAA+TGG | 0.259593 | 5_2:-37136462 | Msa0769300:exon |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5_2:-37135503 | Msa0769300:intron |
| GGAAGTGTGACTTTAGTTTC+AGG | 0.297553 | 5_2:-37133092 | Msa0769300:three_prime_UTR |
| CCACACAGCAATAGAGCTTA+TGG | 0.298609 | 5_2:-37134877 | Msa0769300:CDS |
| TCTCAGAAGCTTGACCCTTT+AGG | 0.298683 | 5_2:-37133047 | Msa0769300:three_prime_UTR |
| AAAGATTTGGAGATGCAAAA+AGG | 0.301210 | 5_2:-37133124 | Msa0769300:three_prime_UTR |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5_2:-37135238 | Msa0769300:CDS |
| CATCATTTGTATATCTCATT+TGG | 0.318038 | 5_2:-37132874 | Msa0769300:three_prime_UTR |
| TATTGTACAGTTGAAAGATT+TGG | 0.322364 | 5_2:-37133137 | Msa0769300:three_prime_UTR |
| CATTCACTATGTTGCATTTG+AGG | 0.340042 | 5_2:+37134805 | None:intergenic |
| GAATCTTGAGGTACAGATTC+AGG | 0.344720 | 5_2:+37133260 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5_2:+37133307 | None:intergenic |
| TATTACATCAAGCATATAGA+TGG | 0.358620 | 5_2:-37134206 | Msa0769300:CDS |
| GTAGTTGGAAAGCAGGATTC+AGG | 0.372324 | 5_2:+37134933 | None:intergenic |
| TAGGGTAAAATTTCCTAGAT+TGG | 0.373854 | 5_2:+37136497 | None:intergenic |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5_2:+37134843 | None:intergenic |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5_2:+37133236 | None:intergenic |
| TTGATTAAGGATTGATGAAA+TGG | 0.382296 | 5_2:+37136474 | None:intergenic |
| ACCCTTATAACAGTGGCATT+TGG | 0.386153 | 5_2:+37135473 | None:intergenic |
| TCCAAATGCCACTGTTATAA+GGG | 0.388624 | 5_2:-37135474 | Msa0769300:intron |
| AGAAAGAACCGAACCAATCT+AGG | 0.389030 | 5_2:-37136510 | Msa0769300:five_prime_UTR |
| TGAGGGGCCACAAGCATATC+AGG | 0.390122 | 5_2:-37134373 | Msa0769300:intron |
| CATTTATGGATTTAGTCTCT+TGG | 0.394737 | 5_2:-37134957 | Msa0769300:intron |
| TACGTGTTACGTTCGATAAT+AGG | 0.395501 | 5_2:+37133453 | None:intergenic |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5_2:-37134476 | Msa0769300:CDS |
| ACAACCAAACACTTCCTAAA+GGG | 0.402715 | 5_2:+37133033 | None:intergenic |
| TTGACCCTTTAGGAAGTGTT+TGG | 0.410378 | 5_2:-37133037 | Msa0769300:three_prime_UTR |
| CCTTAATCAAGAACTATAAT+GGG | 0.419800 | 5_2:-37136461 | Msa0769300:intron |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5_2:-37133322 | Msa0769300:CDS |
| CGAGTCAGTTATAGCAGAAC+CGG | 0.420821 | 5_2:+37134722 | None:intergenic |
| GTTAACACTTTCTATGTTCG+TGG | 0.421080 | 5_2:-37133368 | Msa0769300:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5_2:-37133233 | Msa0769300:CDS |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5_2:-37134475 | Msa0769300:CDS |
| TAAAATTTCCTAGATTGGTT+CGG | 0.435370 | 5_2:+37136502 | None:intergenic |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5_2:-37134665 | Msa0769300:CDS |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5_2:-37133311 | Msa0769300:CDS |
| CCTTGGATCCAATCGTTAGT+TGG | 0.442721 | 5_2:-37132953 | Msa0769300:three_prime_UTR |
| TTACAAAGTTTACACAATCA+AGG | 0.449558 | 5_2:+37132908 | None:intergenic |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5_2:-37134672 | Msa0769300:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5_2:-37133287 | Msa0769300:CDS |
| TCATTTCTCCAACTAACGAT+TGG | 0.461480 | 5_2:+37132945 | None:intergenic |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5_2:-37135245 | Msa0769300:CDS |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5_2:+37134918 | None:intergenic |
| TACAACCAAACACTTCCTAA+AGG | 0.481143 | 5_2:+37133032 | None:intergenic |
| AGCAGAACCGGTTTCTTCGT+CGG | 0.481680 | 5_2:+37134734 | None:intergenic |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5_2:-37134611 | Msa0769300:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5_2:-37133288 | Msa0769300:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5_2:-37135271 | Msa0769300:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5_2:-37134418 | Msa0769300:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5_2:+37134447 | None:intergenic |
| TAGAGCTTATGGGAAGTGAT+AGG | 0.500002 | 5_2:-37134866 | Msa0769300:CDS |
| GAAGTGTGACTTTAGTTTCA+GGG | 0.500752 | 5_2:-37133091 | Msa0769300:three_prime_UTR |
| CAGTTCACAACATCAACATT+TGG | 0.501696 | 5_2:+37134516 | None:intergenic |
| TCTCATAGTAGTTGGAAAGC+AGG | 0.503054 | 5_2:+37134926 | None:intergenic |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5_2:-37135252 | Msa0769300:CDS |
| TGTTGTGAACTGGTCTGATA+AGG | 0.506598 | 5_2:-37134505 | Msa0769300:CDS |
| TTATTCTCAGTCTCATTACA+TGG | 0.508829 | 5_2:-37135657 | Msa0769300:CDS |
| TTAAGGATTGATGAAATGGT+AGG | 0.510582 | 5_2:+37136478 | None:intergenic |
| CACACAGCAATAGAGCTTAT+GGG | 0.511438 | 5_2:-37134876 | Msa0769300:CDS |
| CATGTGACCGACGAAGAAAC+CGG | 0.519219 | 5_2:-37134741 | Msa0769300:CDS |
| AGAGCCGAAGTAACAACAAA+AGG | 0.519245 | 5_2:-37133401 | Msa0769300:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5_2:-37135108 | Msa0769300:CDS |
| ATCGTTAGTTGGAGAAATGA+AGG | 0.524820 | 5_2:-37132942 | Msa0769300:three_prime_UTR |
| CATGCTAATATTGATGCTGA+GGG | 0.531891 | 5_2:-37134390 | Msa0769300:CDS |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5_2:-37134678 | Msa0769300:CDS |
| CGATAATAGGCCAACTCTGT+CGG | 0.536108 | 5_2:+37133466 | None:intergenic |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5_2:-37135249 | Msa0769300:CDS |
| TGACTTTAGTTTCAGGGAGT+AGG | 0.541199 | 5_2:-37133085 | Msa0769300:three_prime_UTR |
| TCATGCTAATATTGATGCTG+AGG | 0.542296 | 5_2:-37134391 | Msa0769300:CDS |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5_2:-37134470 | Msa0769300:CDS |
| CCAACTAACGATTGGATCCA+AGG | 0.544885 | 5_2:+37132953 | None:intergenic |
| CAAATGTTGATGTTGTGAAC+TGG | 0.551926 | 5_2:-37134515 | Msa0769300:CDS |
| GCAGAGGCTTTCGCTAATCA+AGG | 0.556199 | 5_2:-37134700 | Msa0769300:CDS |
| CTCTGCACCACCGACAGAGT+TGG | 0.561892 | 5_2:-37133476 | Msa0769300:CDS |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5_2:-37134675 | Msa0769300:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5_2:-37134657 | Msa0769300:CDS |
| TAAGGATTGATGAAATGGTA+GGG | 0.576796 | 5_2:+37136479 | None:intergenic |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5_2:-37134918 | Msa0769300:CDS |
| TTAGAAGAATGAACCCTCCA+AGG | 0.580242 | 5_2:-37135613 | Msa0769300:intron |
| AAAAGTTAAAGCAAGCATGA+GGG | 0.580372 | 5_2:+37132995 | None:intergenic |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5_2:-37134901 | Msa0769300:CDS |
| ATTACATCAAGCATATAGAT+GGG | 0.598451 | 5_2:-37134205 | Msa0769300:CDS |
| TATAACAGTGGCATTTGGAG+AGG | 0.614763 | 5_2:+37135478 | None:intergenic |
| AAAGTTAAAGCAAGCATGAG+GGG | 0.625283 | 5_2:+37132996 | None:intergenic |
| CTTATGGGAAGTGATAGGCC+AGG | 0.625341 | 5_2:-37134861 | Msa0769300:CDS |
| GCCGAAGTAACAACAAAAGG+AGG | 0.627990 | 5_2:-37133398 | Msa0769300:CDS |
| TGATGAGATTTAGATCAGTG+AGG | 0.629185 | 5_2:+37135280 | None:intergenic |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5_2:-37135327 | Msa0769300:CDS |
| TGTCTATATGAGATCCCAGT+GGG | 0.639963 | 5_2:-37136670 | Msa0769300:five_prime_UTR |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5_2:+37134366 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5_2:-37135100 | Msa0769300:CDS |
| TAATAGGCCAACTCTGTCGG+TGG | 0.652365 | 5_2:+37133469 | None:intergenic |
| TTGTTGTTACAAAGAAACAG+TGG | 0.654042 | 5_2:+37136574 | None:intergenic |
| CCATAAGCTCTATTGCTGTG+TGG | 0.654498 | 5_2:+37134877 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5_2:-37135234 | Msa0769300:intron |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5_2:+37135466 | None:intergenic |
| CTTCGGCTCTTGTAACTGTG+AGG | 0.669145 | 5_2:+37133414 | None:intergenic |
| CTGCTATAACTGACTCGCAG+AGG | 0.675338 | 5_2:-37134716 | Msa0769300:CDS |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5_2:+37133248 | None:intergenic |
| ATGCTAATATTGATGCTGAG+GGG | 0.720303 | 5_2:-37134389 | Msa0769300:CDS |
| GTGTCTATATGAGATCCCAG+TGG | 0.734748 | 5_2:-37136671 | Msa0769300:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATTTTAACTTTTAATA+TGG | - | chr5_2:37133595-37133614 | Msa0769300:intron | 10.0% |
| !! | TATTTACTAAAATATTGTTT+AGG | + | chr5_2:37136013-37136032 | None:intergenic | 10.0% |
| !!! | AAATTTTTTGATGTTTTCTA+TGG | - | chr5_2:37133320-37133339 | Msa0769300:CDS | 15.0% |
| !!! | TAAAAAAGCTTATTCTTTTA+TGG | - | chr5_2:37133641-37133660 | Msa0769300:intron | 15.0% |
| !!! | AAAAAAGCTTATTCTTTTAT+GGG | - | chr5_2:37133642-37133661 | Msa0769300:intron | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | - | chr5_2:37134292-37134311 | Msa0769300:intron | 15.0% |
| !!! | AAGTTTAATTTTTTATGTTC+TGG | - | chr5_2:37134530-37134549 | Msa0769300:CDS | 15.0% |
| !! | TTTATTTGTAAAGATTAAAG+TGG | + | chr5_2:37135338-37135357 | None:intergenic | 15.0% |
| !! | TTAATCTTTACAAATAAACA+TGG | - | chr5_2:37135340-37135359 | Msa0769300:intron | 15.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | chr5_2:37135440-37135459 | Msa0769300:intron | 15.0% |
| !! | TCATAAATTAGTAAATTAAG+TGG | + | chr5_2:37135734-37135753 | None:intergenic | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | chr5_2:37136158-37136177 | Msa0769300:intron | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | chr5_2:37136159-37136178 | Msa0769300:intron | 15.0% |
| !! | AAAACAAGAACAAAAACAAA+AGG | + | chr5_2:37133387-37133406 | None:intergenic | 20.0% |
| !! | TTATTCATCTTCTTTACAAT+TGG | - | chr5_2:37133701-37133720 | Msa0769300:intron | 20.0% |
| !! | ACATATAATAGGATAATGAT+GGG | + | chr5_2:37133848-37133867 | None:intergenic | 20.0% |
| !! | TACATATAATAGGATAATGA+TGG | + | chr5_2:37133849-37133868 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTATGTTTTGAT+TGG | - | chr5_2:37133936-37133955 | Msa0769300:intron | 20.0% |
| !!! | TGCTGTAATTTATGTTTTTA+TGG | - | chr5_2:37134257-37134276 | Msa0769300:intron | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | - | chr5_2:37134503-37134522 | Msa0769300:CDS | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | - | chr5_2:37134504-37134523 | Msa0769300:CDS | 20.0% |
| !! | ATCATATAACATAGAAAAGT+AGG | + | chr5_2:37135811-37135830 | None:intergenic | 20.0% |
| !!! | TTATTTAAAATAAAGGGTCA+TGG | + | chr5_2:37135867-37135886 | None:intergenic | 20.0% |
| !!! | CACAGGTTATTTAAAATAAA+GGG | + | chr5_2:37135873-37135892 | None:intergenic | 20.0% |
| !!! | TCACAGGTTATTTAAAATAA+AGG | + | chr5_2:37135874-37135893 | None:intergenic | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | chr5_2:37136066-37136085 | Msa0769300:intron | 20.0% |
| ! | AAAAATAAAAACAACCCACT+GGG | + | chr5_2:37133018-37133037 | None:intergenic | 25.0% |
| ! | AAAAAATAAAAACAACCCAC+TGG | + | chr5_2:37133019-37133038 | None:intergenic | 25.0% |
| !! | TAAAATTTCCTAGATTGGTT+CGG | + | chr5_2:37133172-37133191 | None:intergenic | 25.0% |
| ! | TTGATTAAGGATTGATGAAA+TGG | + | chr5_2:37133200-37133219 | None:intergenic | 25.0% |
| ! | TCCTTAATCAAGAACTATAA+TGG | - | chr5_2:37133209-37133228 | Msa0769300:CDS | 25.0% |
| ! | CCTTAATCAAGAACTATAAT+GGG | - | chr5_2:37133210-37133229 | Msa0769300:CDS | 25.0% |
| !! | TTTCTATGGTTTTTGTCTTT+TGG | - | chr5_2:37133334-37133353 | Msa0769300:CDS | 25.0% |
| !! | TTCTATGGTTTTTGTCTTTT+GGG | - | chr5_2:37133335-37133354 | Msa0769300:CDS | 25.0% |
| !!! | GTTCTTGTTTTTTGTTTCTT+TGG | - | chr5_2:37133396-37133415 | Msa0769300:CDS | 25.0% |
| !!! | TGTTTTTTGTTTCTTTGGTT+TGG | - | chr5_2:37133401-37133420 | Msa0769300:CDS | 25.0% |
| !! | CTTATTCTTTTATGGGTTTT+TGG | - | chr5_2:37133649-37133668 | Msa0769300:intron | 25.0% |
| !! | AGAGAAAAAGAGGAATATTT+TGG | + | chr5_2:37133762-37133781 | None:intergenic | 25.0% |
| !!! | TACTAGCTTTTGATTTTCAT+TGG | - | chr5_2:37133905-37133924 | Msa0769300:intron | 25.0% |
| ! | ATTACAGCATACTCAAAAAA+AGG | + | chr5_2:37134246-37134265 | None:intergenic | 25.0% |
| !! | AAAGTCAATTTGTATTTTGC+AGG | - | chr5_2:37134322-37134341 | Msa0769300:intron | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | chr5_2:37134400-37134419 | Msa0769300:CDS | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | - | chr5_2:37134505-37134524 | Msa0769300:CDS | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | - | chr5_2:37134607-37134626 | Msa0769300:CDS | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | chr5_2:37135196-37135215 | Msa0769300:intron | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | chr5_2:37135465-37135484 | Msa0769300:intron | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | chr5_2:37135466-37135485 | Msa0769300:intron | 25.0% |
| ! | TGTTAGTACTTACTGATATT+TGG | - | chr5_2:37135580-37135599 | Msa0769300:intron | 25.0% |
| !! | TGTAGCTTTTGTTAAAATCA+CGG | + | chr5_2:37135641-37135660 | None:intergenic | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | + | chr5_2:37135770-37135789 | None:intergenic | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | chr5_2:37135771-37135790 | None:intergenic | 25.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | + | chr5_2:37135958-37135977 | None:intergenic | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | chr5_2:37136074-37136093 | Msa0769300:intron | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | - | chr5_2:37136383-37136402 | Msa0769300:intron | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | - | chr5_2:37136384-37136403 | Msa0769300:intron | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | - | chr5_2:37136471-37136490 | Msa0769300:five_prime_UTR | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | - | chr5_2:37136476-37136495 | Msa0769300:five_prime_UTR | 25.0% |
| ! | TATTGTACAGTTGAAAGATT+TGG | - | chr5_2:37136534-37136553 | Msa0769300:five_prime_UTR | 25.0% |
| ! | TTACAAAGTTTACACAATCA+AGG | + | chr5_2:37136766-37136785 | None:intergenic | 25.0% |
| ! | CATCATTTGTATATCTCATT+TGG | - | chr5_2:37136797-37136816 | Msa0769300:five_prime_UTR | 25.0% |
| ! | TTGTTGTTACAAAGAAACAG+TGG | + | chr5_2:37133100-37133119 | None:intergenic | 30.0% |
| TAGGGTAAAATTTCCTAGAT+TGG | + | chr5_2:37133177-37133196 | None:intergenic | 30.0% | |
| TAAGGATTGATGAAATGGTA+GGG | + | chr5_2:37133195-37133214 | None:intergenic | 30.0% | |
| TTAAGGATTGATGAAATGGT+AGG | + | chr5_2:37133196-37133215 | None:intergenic | 30.0% | |
| CCCATTATAGTTCTTGATTA+AGG | + | chr5_2:37133213-37133232 | None:intergenic | 30.0% | |
| GTTCTTAGATTTCTGTTTCA+TGG | - | chr5_2:37133283-37133302 | Msa0769300:CDS | 30.0% | |
| GGTTTGGAAATTTAGATACA+AGG | - | chr5_2:37133417-37133436 | Msa0769300:CDS | 30.0% | |
| !!! | TTTTGGCTTTCTTCAATAAG+TGG | - | chr5_2:37133666-37133685 | Msa0769300:intron | 30.0% |
| !!! | AAAGAGGAATATTTTGGCTT+GGG | + | chr5_2:37133756-37133775 | None:intergenic | 30.0% |
| !!! | AAAAGAGGAATATTTTGGCT+TGG | + | chr5_2:37133757-37133776 | None:intergenic | 30.0% |
| ! | GTGTTCTTTTTACTACAACT+TGG | - | chr5_2:37133793-37133812 | Msa0769300:intron | 30.0% |
| !! | AATAGGATAATGATGGGTTA+AGG | + | chr5_2:37133842-37133861 | None:intergenic | 30.0% |
| TTATTCTCAGTCTCATTACA+TGG | - | chr5_2:37134014-37134033 | Msa0769300:intron | 30.0% | |
| AAAAAAACTAGTACCTTGGA+GGG | + | chr5_2:37134074-37134093 | None:intergenic | 30.0% | |
| ATGCAAAAAAACTAGTACCT+TGG | + | chr5_2:37134078-37134097 | None:intergenic | 30.0% | |
| TCAGCAAGTAGAAAATAATG+AGG | + | chr5_2:37134140-37134159 | None:intergenic | 30.0% | |
| !!! | ACTTGCTGATTTGTTTTTTC+AGG | - | chr5_2:37134151-37134170 | Msa0769300:intron | 30.0% |
| !!! | CTTGCTGATTTGTTTTTTCA+GGG | - | chr5_2:37134152-37134171 | Msa0769300:intron | 30.0% |
| TTCAGGGTTGTAATTGATAA+TGG | - | chr5_2:37134168-37134187 | Msa0769300:intron | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | chr5_2:37134208-37134227 | None:intergenic | 30.0% | |
| ATACATACTTAGCGAAAAAG+TGG | + | chr5_2:37134475-37134494 | None:intergenic | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | chr5_2:37134563-37134582 | Msa0769300:CDS | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | + | chr5_2:37134690-37134709 | None:intergenic | 30.0% | |
| ! | ACATTGTTTGATGCCATTTA+TGG | - | chr5_2:37134700-37134719 | Msa0769300:CDS | 30.0% |
| CAAGAGACTAAATCCATAAA+TGG | + | chr5_2:37134716-37134735 | None:intergenic | 30.0% | |
| CATTTATGGATTTAGTCTCT+TGG | - | chr5_2:37134714-37134733 | Msa0769300:CDS | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | chr5_2:37135087-37135106 | Msa0769300:CDS | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | chr5_2:37135088-37135107 | Msa0769300:CDS | 30.0% |
| CTGTTGTTACTATTGAATGT+AGG | - | chr5_2:37135195-37135214 | Msa0769300:intron | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | chr5_2:37135201-37135220 | Msa0769300:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | chr5_2:37135253-37135272 | Msa0769300:CDS | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | + | chr5_2:37135308-37135327 | None:intergenic | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | - | chr5_2:37135410-37135429 | Msa0769300:intron | 30.0% | |
| ! | TTTCTGCATCTGATTTTACA+GGG | + | chr5_2:37135494-37135513 | None:intergenic | 30.0% |
| GTACTTACTGATATTTGGAT+TGG | - | chr5_2:37135585-37135604 | Msa0769300:intron | 30.0% | |
| ! | CAGTAAATTTTGCAGAATCA+CGG | - | chr5_2:37135608-37135627 | Msa0769300:intron | 30.0% |
| TAGTAAATTAAGTGGATGCT+TGG | + | chr5_2:37135726-37135745 | None:intergenic | 30.0% | |
| ACTAATTTATGATTTCCTGC+AGG | - | chr5_2:37135742-37135761 | Msa0769300:intron | 30.0% | |
| CTAATTTATGATTTCCTGCA+GGG | - | chr5_2:37135743-37135762 | Msa0769300:intron | 30.0% | |
| AATCTTGCTAGTTGTGATAA+TGG | - | chr5_2:37135896-37135915 | Msa0769300:intron | 30.0% | |
| TGAACTTAACCACAATTTGT+TGG | - | chr5_2:37135977-37135996 | Msa0769300:intron | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | - | chr5_2:37136349-37136368 | Msa0769300:intron | 30.0% | |
| ! | CTAAAGATTGATGATCTTGT+AGG | + | chr5_2:37136438-37136457 | None:intergenic | 30.0% |
| ACAAGATCATCAATCTTTAG+TGG | - | chr5_2:37136438-37136457 | Msa0769300:intron | 30.0% | |
| AAAGATTTGGAGATGCAAAA+AGG | - | chr5_2:37136547-37136566 | Msa0769300:five_prime_UTR | 30.0% | |
| AAGATTTGGAGATGCAAAAA+GGG | - | chr5_2:37136548-37136567 | Msa0769300:five_prime_UTR | 30.0% | |
| AAAAGTTAAAGCAAGCATGA+GGG | + | chr5_2:37136679-37136698 | None:intergenic | 30.0% | |
| AAAAAGTTAAAGCAAGCATG+AGG | + | chr5_2:37136680-37136699 | None:intergenic | 30.0% | |
| ! | TAGTTTTTCACTAATCACCT+TGG | - | chr5_2:37136701-37136720 | Msa0769300:five_prime_UTR | 30.0% |
| GGAGAATCATTCACACAAAA+GGG | + | chr5_2:37133366-37133385 | None:intergenic | 35.0% | |
| AGGAGAATCATTCACACAAA+AGG | + | chr5_2:37133367-37133386 | None:intergenic | 35.0% | |
| GTTTCGTTAATGCCTCAATT+AGG | - | chr5_2:37133445-37133464 | Msa0769300:CDS | 35.0% | |
| CAATTTGTGCTACCTAATTG+AGG | + | chr5_2:37133460-37133479 | None:intergenic | 35.0% | |
| TTTCTCTCTCACTTTCTTTC+TGG | - | chr5_2:37133546-37133565 | Msa0769300:intron | 35.0% | |
| !!! | TCACTTTCTTTCTGGCTTTT+GGG | - | chr5_2:37133554-37133573 | Msa0769300:intron | 35.0% |
| CAAAAAAACTAGTACCTTGG+AGG | + | chr5_2:37134075-37134094 | None:intergenic | 35.0% | |
| TCCAAATGCCACTGTTATAA+GGG | - | chr5_2:37134197-37134216 | Msa0769300:CDS | 35.0% | |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | chr5_2:37134344-37134363 | Msa0769300:intron | 35.0% |
| TGATGAGATTTAGATCAGTG+AGG | + | chr5_2:37134394-37134413 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | - | chr5_2:37134419-37134438 | Msa0769300:CDS | 35.0% | |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | chr5_2:37134592-37134611 | Msa0769300:intron | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | chr5_2:37134770-37134789 | Msa0769300:CDS | 35.0% |
| CATTCACTATGTTGCATTTG+AGG | + | chr5_2:37134869-37134888 | None:intergenic | 35.0% | |
| CAAATGCAACATAGTGAATG+CGG | - | chr5_2:37134869-37134888 | Msa0769300:CDS | 35.0% | |
| CAGTTCACAACATCAACATT+TGG | + | chr5_2:37135158-37135177 | None:intergenic | 35.0% | |
| CAAATGTTGATGTTGTGAAC+TGG | - | chr5_2:37135156-37135175 | Msa0769300:intron | 35.0% | |
| TCATGCTAATATTGATGCTG+AGG | - | chr5_2:37135280-37135299 | Msa0769300:CDS | 35.0% | |
| CATGCTAATATTGATGCTGA+GGG | - | chr5_2:37135281-37135300 | Msa0769300:CDS | 35.0% | |
| ATGCTAATATTGATGCTGAG+GGG | - | chr5_2:37135282-37135301 | Msa0769300:CDS | 35.0% | |
| TGTACTTTGCTGGGTTTATA+AGG | - | chr5_2:37135398-37135417 | Msa0769300:intron | 35.0% | |
| ! | TTCTGCATCTGATTTTACAG+GGG | + | chr5_2:37135493-37135512 | None:intergenic | 35.0% |
| ! | CTTTCTGCATCTGATTTTAC+AGG | + | chr5_2:37135495-37135514 | None:intergenic | 35.0% |
| TATTGAGAGAAGAGTTTCTG+AGG | - | chr5_2:37135545-37135564 | Msa0769300:intron | 35.0% | |
| ! | CAACTAGCAAGATTTTTCAC+AGG | + | chr5_2:37135890-37135909 | None:intergenic | 35.0% |
| AACTGCTATTCAACTAACCT+TGG | + | chr5_2:37135923-37135942 | None:intergenic | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | + | chr5_2:37135989-37136008 | None:intergenic | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | chr5_2:37136083-37136102 | Msa0769300:intron | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | chr5_2:37136221-37136240 | None:intergenic | 35.0% | |
| !!! | TCCTCCTTTTGTTGTTACTT+CGG | + | chr5_2:37136277-37136296 | None:intergenic | 35.0% |
| GTTAACACTTTCTATGTTCG+TGG | - | chr5_2:37136303-37136322 | Msa0769300:intron | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | - | chr5_2:37136360-37136379 | Msa0769300:intron | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | + | chr5_2:37136367-37136386 | None:intergenic | 35.0% | |
| ! | GAAGTGTGACTTTAGTTTCA+GGG | - | chr5_2:37136580-37136599 | Msa0769300:five_prime_UTR | 35.0% |
| ACAACCAAACACTTCCTAAA+GGG | + | chr5_2:37136641-37136660 | None:intergenic | 35.0% | |
| TACAACCAAACACTTCCTAA+AGG | + | chr5_2:37136642-37136661 | None:intergenic | 35.0% | |
| AAAGTTAAAGCAAGCATGAG+GGG | + | chr5_2:37136678-37136697 | None:intergenic | 35.0% | |
| TCATTTCTCCAACTAACGAT+TGG | + | chr5_2:37136729-37136748 | None:intergenic | 35.0% | |
| ATCGTTAGTTGGAGAAATGA+AGG | - | chr5_2:37136729-37136748 | Msa0769300:five_prime_UTR | 35.0% | |
| TGTCTATATGAGATCCCAGT+GGG | - | chr5_2:37133001-37133020 | Msa0769300:three_prime_UTR | 40.0% | |
| AGAAAGAACCGAACCAATCT+AGG | - | chr5_2:37133161-37133180 | Msa0769300:exon | 40.0% | |
| !!! | CTCACTTTCTTTCTGGCTTT+TGG | - | chr5_2:37133553-37133572 | Msa0769300:intron | 40.0% |
| GCAGAAAGAGAGAGAAAAAG+AGG | + | chr5_2:37133772-37133791 | None:intergenic | 40.0% | |
| !! | AATGATGGGTTAAGGTAACC+TGG | + | chr5_2:37133834-37133853 | None:intergenic | 40.0% |
| TTAGAAGAATGAACCCTCCA+AGG | - | chr5_2:37134058-37134077 | Msa0769300:intron | 40.0% | |
| TATAACAGTGGCATTTGGAG+AGG | + | chr5_2:37134196-37134215 | None:intergenic | 40.0% | |
| CTCCAAATGCCACTGTTATA+AGG | - | chr5_2:37134196-37134215 | Msa0769300:CDS | 40.0% | |
| ACCCTTATAACAGTGGCATT+TGG | + | chr5_2:37134201-37134220 | None:intergenic | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | - | chr5_2:37134422-37134441 | Msa0769300:CDS | 40.0% | |
| !! | ACATTTCTTCTGATGGTGGA+TGG | - | chr5_2:37134426-37134445 | Msa0769300:CDS | 40.0% |
| AACTGACCAAGATGGAAACA+AGG | - | chr5_2:37134571-37134590 | Msa0769300:intron | 40.0% | |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | chr5_2:37134580-37134599 | None:intergenic | 40.0% |
| AGAAAGGTGAGTGTCTCATT+TGG | - | chr5_2:37134623-37134642 | Msa0769300:CDS | 40.0% | |
| TCTCATAGTAGTTGGAAAGC+AGG | + | chr5_2:37134748-37134767 | None:intergenic | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | chr5_2:37134756-37134775 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | chr5_2:37134753-37134772 | Msa0769300:CDS | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | - | chr5_2:37134795-37134814 | Msa0769300:intron | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | - | chr5_2:37134805-37134824 | Msa0769300:intron | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | chr5_2:37135060-37135079 | Msa0769300:intron | 40.0% | |
| ! | TGTTGTGAACTGGTCTGATA+AGG | - | chr5_2:37135166-37135185 | Msa0769300:intron | 40.0% |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | chr5_2:37135227-37135246 | None:intergenic | 40.0% |
| ACAGACTTGTGAGATTCCTT+TGG | - | chr5_2:37135365-37135384 | Msa0769300:intron | 40.0% | |
| !! | AGAGAAGAGTTTCTGAGGTA+AGG | - | chr5_2:37135550-37135569 | Msa0769300:intron | 40.0% |
| !! | GAGAAGAGTTTCTGAGGTAA+GGG | - | chr5_2:37135551-37135570 | Msa0769300:intron | 40.0% |
| !! | CTAGTTGTGATAATGGTCCA+AGG | - | chr5_2:37135903-37135922 | Msa0769300:intron | 40.0% |
| AGAGCCGAAGTAACAACAAA+AGG | - | chr5_2:37136270-37136289 | Msa0769300:intron | 40.0% | |
| GAATCTTGAGGTACAGATTC+AGG | + | chr5_2:37136414-37136433 | None:intergenic | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | + | chr5_2:37136426-37136445 | None:intergenic | 40.0% | |
| ! | GATGCAAAAAGGGTTAGTAG+AGG | - | chr5_2:37136558-37136577 | Msa0769300:five_prime_UTR | 40.0% |
| ! | GGAAGTGTGACTTTAGTTTC+AGG | - | chr5_2:37136579-37136598 | Msa0769300:five_prime_UTR | 40.0% |
| ! | TGACTTTAGTTTCAGGGAGT+AGG | - | chr5_2:37136586-37136605 | Msa0769300:five_prime_UTR | 40.0% |
| !! | TTGACCCTTTAGGAAGTGTT+TGG | - | chr5_2:37136634-37136653 | Msa0769300:five_prime_UTR | 40.0% |
| GTGTCTATATGAGATCCCAG+TGG | - | chr5_2:37133000-37133019 | Msa0769300:three_prime_UTR | 45.0% | |
| !! | TGGCTACAACTTGCTAAACC+AGG | - | chr5_2:37133813-37133832 | Msa0769300:intron | 45.0% |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | chr5_2:37134433-37134452 | Msa0769300:CDS | 45.0% |
| GTAGTTGGAAAGCAGGATTC+AGG | + | chr5_2:37134741-37134760 | None:intergenic | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | + | chr5_2:37134797-37134816 | None:intergenic | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | - | chr5_2:37134794-37134813 | Msa0769300:intron | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | + | chr5_2:37134831-37134850 | None:intergenic | 45.0% |
| ATGCAACATAGTGAATGCGG+AGG | - | chr5_2:37134872-37134891 | Msa0769300:CDS | 45.0% | |
| ACATAGTGAATGCGGAGGTT+TGG | - | chr5_2:37134877-37134896 | Msa0769300:CDS | 45.0% | |
| CGAGTCAGTTATAGCAGAAC+CGG | + | chr5_2:37134952-37134971 | None:intergenic | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | - | chr5_2:37134993-37135012 | Msa0769300:intron | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | - | chr5_2:37134996-37135015 | Msa0769300:intron | 45.0% | |
| GTGAGATTCCTTTGGTTGCT+TGG | - | chr5_2:37135373-37135392 | Msa0769300:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | chr5_2:37135384-37135403 | None:intergenic | 45.0% | |
| TTGCTTGGTCTGTACTTTGC+TGG | - | chr5_2:37135388-37135407 | Msa0769300:intron | 45.0% | |
| TGCTTGGTCTGTACTTTGCT+GGG | - | chr5_2:37135389-37135408 | Msa0769300:intron | 45.0% | |
| CGATAATAGGCCAACTCTGT+CGG | + | chr5_2:37136208-37136227 | None:intergenic | 45.0% | |
| GCCGAAGTAACAACAAAAGG+AGG | - | chr5_2:37136273-37136292 | Msa0769300:intron | 45.0% | |
| TTCTATGTTCGTGGAGCTTC+TGG | - | chr5_2:37136312-37136331 | Msa0769300:intron | 45.0% | |
| TCTCAGAAGCTTGACCCTTT+AGG | - | chr5_2:37136624-37136643 | Msa0769300:five_prime_UTR | 45.0% | |
| CCAACTAACGATTGGATCCA+AGG | + | chr5_2:37136721-37136740 | None:intergenic | 45.0% | |
| CCTTGGATCCAATCGTTAGT+TGG | - | chr5_2:37136718-37136737 | Msa0769300:five_prime_UTR | 45.0% | |
| !! | ATTAAATATATACATATAAT+AGG | + | chr5_2:37133859-37133878 | None:intergenic | 5.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | chr5_2:37134437-37134456 | Msa0769300:CDS | 50.0% |
| CTTATGGGAAGTGATAGGCC+AGG | - | chr5_2:37134810-37134829 | Msa0769300:intron | 50.0% | |
| CATGTGACCGACGAAGAAAC+CGG | - | chr5_2:37134930-37134949 | Msa0769300:CDS | 50.0% | |
| ! | AGCAGAACCGGTTTCTTCGT+CGG | + | chr5_2:37134940-37134959 | None:intergenic | 50.0% |
| !! | CTGCTATAACTGACTCGCAG+AGG | - | chr5_2:37134955-37134974 | Msa0769300:intron | 50.0% |
| GCAGAGGCTTTCGCTAATCA+AGG | - | chr5_2:37134971-37134990 | Msa0769300:intron | 50.0% | |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | - | chr5_2:37134999-37135018 | Msa0769300:intron | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | chr5_2:37135006-37135025 | Msa0769300:intron | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | chr5_2:37135014-37135033 | Msa0769300:intron | 50.0% |
| TAATAGGCCAACTCTGTCGG+TGG | + | chr5_2:37136205-37136224 | None:intergenic | 50.0% | |
| CTTCGGCTCTTGTAACTGTG+AGG | + | chr5_2:37136260-37136279 | None:intergenic | 50.0% | |
| TGAGGGGCCACAAGCATATC+AGG | - | chr5_2:37135298-37135317 | Msa0769300:CDS | 55.0% | |
| ACAATGAAGAGGGTCCCTGC+AGG | + | chr5_2:37135760-37135779 | None:intergenic | 55.0% | |
| CTCTGCACCACCGACAGAGT+TGG | - | chr5_2:37136195-37136214 | Msa0769300:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 37132865 | 37136828 | 37132865 | ID=Msa0769300;Name=Msa0769300 |
| chr5_2 | mRNA | 37132865 | 37136828 | 37132865 | ID=Msa0769300-mRNA-1;Parent=Msa0769300;Name=Msa0769300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=363|0.66|0.6|1|0.55|0.5|10|313|428 |
| chr5_2 | exon | 37132865 | 37133513 | 37132865 | ID=Msa0769300-mRNA-1:exon:12297;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37134172 | 37134231 | 37134172 | ID=Msa0769300-mRNA-1:exon:12296;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37134374 | 37134584 | 37134374 | ID=Msa0769300-mRNA-1:exon:12295;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37134597 | 37134799 | 37134597 | ID=Msa0769300-mRNA-1:exon:12294;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37134812 | 37134964 | 37134812 | ID=Msa0769300-mRNA-1:exon:12293;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37135065 | 37135132 | 37135065 | ID=Msa0769300-mRNA-1:exon:12292;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37135235 | 37135349 | 37135235 | ID=Msa0769300-mRNA-1:exon:12291;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37135475 | 37135520 | 37135475 | ID=Msa0769300-mRNA-1:exon:12290;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37135614 | 37135704 | 37135614 | ID=Msa0769300-mRNA-1:exon:12289;Parent=Msa0769300-mRNA-1 |
| chr5_2 | exon | 37136462 | 37136828 | 37136462 | ID=Msa0769300-mRNA-1:exon:12288;Parent=Msa0769300-mRNA-1 |
| chr5_2 | five_prime_UTR | 37136466 | 37136828 | 37136466 | ID=Msa0769300-mRNA-1:five_prime_utr;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37136462 | 37136465 | 37136462 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37135614 | 37135704 | 37135614 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37135475 | 37135520 | 37135475 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37135235 | 37135349 | 37135235 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37135065 | 37135132 | 37135065 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37134812 | 37134964 | 37134812 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37134597 | 37134799 | 37134597 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37134374 | 37134584 | 37134374 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37134172 | 37134231 | 37134172 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | CDS | 37133178 | 37133513 | 37133178 | ID=Msa0769300-mRNA-1:cds;Parent=Msa0769300-mRNA-1 |
| chr5_2 | three_prime_UTR | 37132865 | 37133177 | 37132865 | ID=Msa0769300-mRNA-1:three_prime_utr;Parent=Msa0769300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
