Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848640 | XP_013456258.1 | 83.901 | 323 | 34 | 3 | 1 | 305 | 1 | 323 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848640 | sp|Q9T072|BH025_ARATH | 41.379 | 203 | 98 | 6 | 121 | 305 | 128 | 327 | 3.27e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848640 | A0A072UKL2 | 83.901 | 323 | 34 | 3 | 1 | 305 | 1 | 323 | 0.0 | 517 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0848640 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0848640 | Msa0848680 | 0.854230 | 1.413774e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848640 | MtrunA17_Chr4g0033281 | 83.901 | 323 | 34 | 3 | 1 | 305 | 1 | 323 | 0.0 | 517 |
| Msa0848640 | MtrunA17_Chr4g0033291 | 79.290 | 338 | 31 | 6 | 1 | 308 | 1 | 329 | 1.52e-179 | 498 |
| Msa0848640 | MtrunA17_Chr4g0033391 | 76.807 | 332 | 36 | 5 | 1 | 305 | 1 | 318 | 1.25e-175 | 488 |
| Msa0848640 | MtrunA17_Chr2g0307131 | 58.266 | 369 | 78 | 7 | 1 | 307 | 1 | 355 | 1.60e-127 | 367 |
| Msa0848640 | MtrunA17_Chr6g0468491 | 61.465 | 314 | 93 | 7 | 23 | 308 | 1 | 314 | 4.89e-121 | 350 |
| Msa0848640 | MtrunA17_Chr2g0307141 | 56.604 | 371 | 87 | 8 | 1 | 308 | 1 | 360 | 1.60e-117 | 342 |
| Msa0848640 | MtrunA17_Chr6g0468461 | 51.064 | 329 | 110 | 7 | 1 | 291 | 1 | 316 | 2.02e-91 | 276 |
| Msa0848640 | MtrunA17_Chr7g0225901 | 56.618 | 272 | 75 | 7 | 23 | 283 | 1 | 240 | 1.01e-88 | 265 |
| Msa0848640 | MtrunA17_Chr4g0054621 | 48.266 | 346 | 137 | 11 | 1 | 308 | 1 | 342 | 2.46e-86 | 262 |
| Msa0848640 | MtrunA17_Chr4g0054581 | 57.741 | 239 | 82 | 4 | 88 | 308 | 142 | 379 | 7.48e-82 | 252 |
| Msa0848640 | MtrunA17_Chr4g0054581 | 55.696 | 79 | 28 | 3 | 1 | 77 | 1 | 74 | 9.09e-15 | 74.3 |
| Msa0848640 | MtrunA17_Chr5g0400621 | 42.284 | 324 | 144 | 9 | 17 | 307 | 20 | 333 | 3.42e-62 | 200 |
| Msa0848640 | MtrunA17_Chr5g0400661 | 35.088 | 342 | 157 | 9 | 13 | 303 | 7 | 334 | 3.70e-45 | 156 |
| Msa0848640 | MtrunA17_Chr4g0002801 | 41.667 | 204 | 98 | 6 | 122 | 304 | 128 | 331 | 6.51e-42 | 147 |
| Msa0848640 | MtrunA17_Chr5g0400641 | 52.500 | 160 | 58 | 5 | 144 | 289 | 1 | 156 | 9.57e-42 | 142 |
| Msa0848640 | MtrunA17_Chr2g0280161 | 43.243 | 185 | 92 | 2 | 134 | 305 | 168 | 352 | 1.55e-40 | 144 |
| Msa0848640 | MtrunA17_Chr4g0054551 | 39.130 | 207 | 110 | 4 | 107 | 302 | 123 | 324 | 7.15e-40 | 142 |
| Msa0848640 | MtrunA17_Chr8g0336681 | 39.175 | 194 | 101 | 2 | 128 | 304 | 143 | 336 | 3.39e-39 | 140 |
| Msa0848640 | MtrunA17_Chr4g0054561 | 38.647 | 207 | 111 | 4 | 107 | 302 | 123 | 324 | 7.01e-39 | 139 |
| Msa0848640 | MtrunA17_Chr4g0049331 | 39.614 | 207 | 103 | 3 | 115 | 305 | 109 | 309 | 1.09e-38 | 138 |
| Msa0848640 | MtrunA17_Chr4g0002781 | 37.872 | 235 | 120 | 7 | 92 | 304 | 120 | 350 | 1.40e-38 | 139 |
| Msa0848640 | MtrunA17_Chr2g0333621 | 39.409 | 203 | 111 | 3 | 117 | 307 | 113 | 315 | 3.75e-38 | 137 |
| Msa0848640 | MtrunA17_Chr4g0054571 | 45.405 | 185 | 84 | 4 | 138 | 305 | 147 | 331 | 1.49e-37 | 136 |
| Msa0848640 | MtrunA17_Chr2g0333641 | 38.182 | 220 | 118 | 5 | 93 | 302 | 95 | 306 | 1.26e-36 | 133 |
| Msa0848640 | MtrunA17_Chr5g0400671 | 35.749 | 207 | 105 | 4 | 116 | 303 | 126 | 323 | 3.71e-36 | 132 |
| Msa0848640 | MtrunA17_Chr2g0333541 | 43.316 | 187 | 90 | 5 | 130 | 301 | 81 | 266 | 7.76e-36 | 130 |
| Msa0848640 | MtrunA17_Chr2g0333611 | 38.503 | 187 | 103 | 5 | 130 | 305 | 32 | 217 | 1.74e-33 | 122 |
| Msa0848640 | MtrunA17_Chr7g0249811 | 37.864 | 206 | 124 | 3 | 100 | 304 | 127 | 329 | 2.79e-33 | 125 |
| Msa0848640 | MtrunA17_Chr4g0002831 | 37.423 | 163 | 95 | 5 | 143 | 302 | 45 | 203 | 6.99e-26 | 102 |
| Msa0848640 | MtrunA17_Chr7g0233441 | 37.931 | 145 | 78 | 2 | 164 | 302 | 57 | 195 | 7.84e-24 | 96.3 |
| Msa0848640 | MtrunA17_Chr4g0002851 | 39.568 | 139 | 76 | 2 | 164 | 302 | 65 | 195 | 8.54e-23 | 93.6 |
| Msa0848640 | MtrunA17_Chr8g0366751 | 30.120 | 166 | 85 | 2 | 133 | 267 | 444 | 609 | 7.38e-16 | 78.2 |
| Msa0848640 | MtrunA17_Chr8g0346161 | 26.891 | 238 | 140 | 8 | 56 | 260 | 187 | 423 | 1.73e-15 | 76.6 |
| Msa0848640 | MtrunA17_Chr1g0185621 | 31.944 | 144 | 76 | 3 | 141 | 264 | 475 | 616 | 1.40e-14 | 74.3 |
| Msa0848640 | MtrunA17_Chr7g0275821 | 30.519 | 154 | 101 | 2 | 137 | 284 | 244 | 397 | 1.92e-14 | 73.6 |
| Msa0848640 | MtrunA17_Chr8g0346151 | 30.000 | 150 | 76 | 5 | 115 | 240 | 248 | 392 | 3.54e-14 | 72.8 |
| Msa0848640 | MtrunA17_Chr5g0411341 | 29.282 | 181 | 75 | 4 | 126 | 267 | 474 | 640 | 1.59e-13 | 70.9 |
| Msa0848640 | MtrunA17_Chr7g0260841 | 36.082 | 97 | 52 | 1 | 108 | 194 | 312 | 408 | 1.97e-12 | 67.4 |
| Msa0848640 | MtrunA17_Chr8g0365711 | 27.684 | 177 | 101 | 6 | 126 | 280 | 227 | 398 | 6.60e-12 | 65.9 |
| Msa0848640 | MtrunA17_Chr3g0131691 | 26.596 | 188 | 117 | 3 | 127 | 294 | 284 | 470 | 8.42e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848640 | AT4G37850.2 | 41.379 | 203 | 98 | 6 | 121 | 305 | 128 | 327 | 3.33e-37 | 135 |
| Msa0848640 | AT4G37850.1 | 41.379 | 203 | 98 | 6 | 121 | 305 | 128 | 327 | 3.33e-37 | 135 |
| Msa0848640 | AT2G22750.3 | 33.429 | 347 | 166 | 13 | 8 | 306 | 4 | 333 | 1.13e-36 | 134 |
| Msa0848640 | AT2G22750.5 | 32.941 | 340 | 164 | 12 | 15 | 306 | 6 | 329 | 3.26e-36 | 132 |
| Msa0848640 | AT2G22760.1 | 40.212 | 189 | 97 | 5 | 130 | 303 | 108 | 295 | 5.53e-36 | 131 |
| Msa0848640 | AT2G22750.4 | 33.429 | 347 | 165 | 14 | 8 | 306 | 4 | 332 | 2.56e-35 | 130 |
| Msa0848640 | AT2G22750.2 | 37.759 | 241 | 112 | 7 | 99 | 306 | 70 | 305 | 1.67e-34 | 127 |
| Msa0848640 | AT2G22750.1 | 37.759 | 241 | 111 | 8 | 99 | 306 | 70 | 304 | 2.45e-33 | 124 |
| Msa0848640 | AT2G22770.1 | 37.766 | 188 | 92 | 2 | 140 | 302 | 131 | 318 | 7.62e-31 | 118 |
| Msa0848640 | AT2G22760.2 | 40.476 | 168 | 85 | 4 | 130 | 283 | 108 | 274 | 5.33e-30 | 115 |
| Msa0848640 | AT5G46760.1 | 32.178 | 202 | 98 | 8 | 123 | 287 | 393 | 592 | 1.27e-18 | 86.7 |
| Msa0848640 | AT4G17880.1 | 32.110 | 218 | 118 | 7 | 78 | 265 | 340 | 557 | 1.01e-17 | 84.0 |
| Msa0848640 | AT1G32640.1 | 32.500 | 160 | 87 | 3 | 126 | 267 | 433 | 589 | 2.36e-15 | 77.0 |
| Msa0848640 | AT2G46510.1 | 37.931 | 116 | 54 | 3 | 133 | 238 | 377 | 484 | 6.53e-15 | 75.5 |
| Msa0848640 | AT1G01260.1 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 1.53e-13 | 71.2 |
| Msa0848640 | AT1G01260.2 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 1.53e-13 | 71.2 |
| Msa0848640 | AT1G01260.3 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 1.53e-13 | 71.2 |
| Msa0848640 | AT4G09820.1 | 25.000 | 292 | 170 | 9 | 20 | 306 | 269 | 516 | 3.09e-13 | 70.5 |
| Msa0848640 | AT4G16430.1 | 46.575 | 73 | 35 | 1 | 126 | 194 | 301 | 373 | 8.32e-13 | 68.9 |
| Msa0848640 | AT5G46830.1 | 54.839 | 62 | 24 | 1 | 137 | 194 | 335 | 396 | 4.02e-12 | 67.0 |
| Msa0848640 | AT5G41315.2 | 27.869 | 183 | 94 | 6 | 132 | 279 | 440 | 619 | 6.21e-11 | 63.5 |
| Msa0848640 | AT5G41315.3 | 27.869 | 183 | 94 | 6 | 132 | 279 | 437 | 616 | 6.31e-11 | 63.5 |
| Msa0848640 | AT5G41315.1 | 27.869 | 183 | 94 | 6 | 132 | 279 | 432 | 611 | 7.02e-11 | 63.5 |
Find 47 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTCCTAACCTTAAAA+AGG | 0.267726 | 5_4:+33486075 | Msa0848640:CDS |
| CAGCAGCTGGTTATCTGATT+TGG | 0.268145 | 5_4:+33485481 | Msa0848640:CDS |
| GGGGCTTCTGGTTAAAATTA+TGG | 0.308732 | 5_4:+33486930 | Msa0848640:CDS |
| CAAGGAGCACAAGGGGCTTC+TGG | 0.325264 | 5_4:+33486918 | Msa0848640:CDS |
| GCTAAGATCATTTGTGGAAA+TGG | 0.327969 | 5_4:-33485777 | None:intergenic |
| TCAAGAACAAAACAAACAAT+TGG | 0.334442 | 5_4:+33485751 | Msa0848640:CDS |
| CAAGTGGAAGCAAGAGTGTT+AGG | 0.334987 | 5_4:+33486868 | Msa0848640:CDS |
| ATTCATGAAACAATTGATAA+TGG | 0.338552 | 5_4:+33485809 | Msa0848640:CDS |
| ATCAGTGTCTCCAACCGAAT+TGG | 0.364748 | 5_4:+33485886 | Msa0848640:CDS |
| CTGCAAGAGCAATGAAGCTC+TGG | 0.379324 | 5_4:-33486051 | None:intergenic |
| CAAGAACAAAACAAACAATT+GGG | 0.390107 | 5_4:+33485752 | Msa0848640:CDS |
| ATCGCTGCATATGCATGGTT+TGG | 0.407010 | 5_4:-33486791 | None:intergenic |
| ACTCTTGCTTCCACTTGAAA+TGG | 0.409697 | 5_4:-33486862 | None:intergenic |
| AGAAACATCAAAAGGGTCAT+TGG | 0.411401 | 5_4:+33485928 | Msa0848640:CDS |
| AATAACAGTGTCTTACCCTT+TGG | 0.416567 | 5_4:+33486985 | Msa0848640:CDS |
| GCCCCTTGTGCTCCTTGCAT+TGG | 0.417499 | 5_4:-33486912 | None:intergenic |
| TCACAAGTTCCTTTATGCTC+AGG | 0.418425 | 5_4:-33487235 | None:intergenic |
| CATCTGCATCAAGAAAATTC+AGG | 0.444660 | 5_4:-33485691 | None:intergenic |
| TAGGAAAACAAGTGTTGATT+CGG | 0.449123 | 5_4:+33486887 | Msa0848640:CDS |
| AGCAAAAGGCCTCGTGCTCA+TGG | 0.450095 | 5_4:+33485983 | Msa0848640:CDS |
| CACTCAACAGAAACATCAAA+AGG | 0.454180 | 5_4:+33485920 | Msa0848640:CDS |
| TGACTTGCTAAGATCATTTG+TGG | 0.465292 | 5_4:-33485783 | None:intergenic |
| TTGATGATACTTTCATTGCT+CGG | 0.501130 | 5_4:-33485457 | None:intergenic |
| GGTAGCTACCTGAGCAATGA+TGG | 0.511294 | 5_4:-33487028 | None:intergenic |
| TTCTTGATGCAGATGTGGGA+GGG | 0.544131 | 5_4:+33485699 | Msa0848640:CDS |
| CGACATTACCATCATTGCTC+AGG | 0.544333 | 5_4:+33487020 | Msa0848640:CDS |
| GTTGATTCGGTTCCAATGCA+AGG | 0.545125 | 5_4:+33486900 | Msa0848640:CDS |
| GTTCCAATGCAAGGAGCACA+AGG | 0.563766 | 5_4:+33486909 | Msa0848640:CDS |
| TGCAAGAGCAATGAAGCTCT+GGG | 0.565077 | 5_4:-33486050 | None:intergenic |
| ACTCAACAGAAACATCAAAA+GGG | 0.567021 | 5_4:+33485921 | Msa0848640:CDS |
| TCTTCATCGCTGCATATGCA+TGG | 0.570607 | 5_4:-33486796 | None:intergenic |
| AAGTATCATCAATCAGCAGC+TGG | 0.573007 | 5_4:+33485468 | Msa0848640:CDS |
| AAGGCCTCGTGCTCATGGAA+AGG | 0.577326 | 5_4:+33485988 | Msa0848640:CDS |
| TGTTGCTTCACCATTTCAAG+TGG | 0.586046 | 5_4:+33486852 | Msa0848640:CDS |
| TTTCTTGATGCAGATGTGGG+AGG | 0.588172 | 5_4:+33485698 | Msa0848640:CDS |
| GTCGAGTGTAGAATCTCCAA+AGG | 0.590011 | 5_4:-33487001 | None:intergenic |
| TCCAATGCAAGGAGCACAAG+GGG | 0.595381 | 5_4:+33486911 | Msa0848640:CDS |
| TCATGGAAAGGATCACATCA+TGG | 0.611063 | 5_4:+33486000 | Msa0848640:CDS |
| TCGAGTGTAGAATCTCCAAA+GGG | 0.615421 | 5_4:-33487000 | None:intergenic |
| CTGCATATGCATGGTTTGGT+CGG | 0.617639 | 5_4:-33486787 | None:intergenic |
| AGGGTACAACCTGAGCATAA+AGG | 0.620360 | 5_4:+33487226 | Msa0848640:CDS |
| CGAATACAATATATTTGCTG+AGG | 0.624364 | 5_4:+33485661 | Msa0848640:CDS |
| TGAAGATTCGTCATCATGTG+AGG | 0.642706 | 5_4:+33486813 | Msa0848640:CDS |
| TTCCAATGCAAGGAGCACAA+GGG | 0.644827 | 5_4:+33486910 | Msa0848640:CDS |
| AAGAACAAAACAAACAATTG+GGG | 0.650416 | 5_4:+33485753 | Msa0848640:CDS |
| ACTTGTGAAGAACGTACGCA+TGG | 0.661373 | 5_4:+33487250 | Msa0848640:CDS |
| TGATCCTTTCCATGAGCACG+AGG | 0.668624 | 5_4:-33485992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATTTTTTTTTGC+AGG | + | chr5_4:33485631-33485650 | Msa0848640:intron | 10.0% |
| !!! | GTTTATATTTTGAAATATTT+AGG | + | chr5_4:33486245-33486264 | Msa0848640:intron | 10.0% |
| !!! | ATTTTTTTTTGTGTAAATTA+TGG | + | chr5_4:33486445-33486464 | Msa0848640:intron | 10.0% |
| !!! | AGAAAAATCAATTTTATTTA+AGG | + | chr5_4:33486626-33486645 | Msa0848640:intron | 10.0% |
| !!! | TTTATTATTTTTCTTTTAGA+TGG | + | chr5_4:33486684-33486703 | Msa0848640:intron | 10.0% |
| !! | AATTAAAAAAAAATTGTGAT+AGG | - | chr5_4:33487052-33487071 | None:intergenic | 10.0% |
| !!! | ATCATATATTATTTTATAGT+TGG | + | chr5_4:33487199-33487218 | Msa0848640:intron | 10.0% |
| !!! | TCATATATTATTTTATAGTT+GGG | + | chr5_4:33487200-33487219 | Msa0848640:intron | 10.0% |
| !!! | ATTTTTTTATTTTTTTTTGC+AGG | + | chr5_4:33485631-33485650 | Msa0848640:intron | 10.0% |
| !!! | GTTTATATTTTGAAATATTT+AGG | + | chr5_4:33486245-33486264 | Msa0848640:intron | 10.0% |
| !!! | ATTTTTTTTTGTGTAAATTA+TGG | + | chr5_4:33486445-33486464 | Msa0848640:intron | 10.0% |
| !!! | AGAAAAATCAATTTTATTTA+AGG | + | chr5_4:33486626-33486645 | Msa0848640:intron | 10.0% |
| !!! | TTTATTATTTTTCTTTTAGA+TGG | + | chr5_4:33486684-33486703 | Msa0848640:intron | 10.0% |
| !! | AATTAAAAAAAAATTGTGAT+AGG | - | chr5_4:33487052-33487071 | None:intergenic | 10.0% |
| !!! | ATCATATATTATTTTATAGT+TGG | + | chr5_4:33487199-33487218 | Msa0848640:intron | 10.0% |
| !!! | TCATATATTATTTTATAGTT+GGG | + | chr5_4:33487200-33487219 | Msa0848640:intron | 10.0% |
| !!! | CTTACATTTAACTTAATTAA+TGG | - | chr5_4:33485585-33485604 | None:intergenic | 15.0% |
| !! | TATGTATATTGTTTATATAG+AGG | - | chr5_4:33486514-33486533 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTCTTTTGATTT+TGG | + | chr5_4:33487136-33487155 | Msa0848640:intron | 15.0% |
| !! | ATGATTAATATTAGATACAA+GGG | - | chr5_4:33487184-33487203 | None:intergenic | 15.0% |
| !! | TATGATTAATATTAGATACA+AGG | - | chr5_4:33487185-33487204 | None:intergenic | 15.0% |
| !!! | CTTACATTTAACTTAATTAA+TGG | - | chr5_4:33485585-33485604 | None:intergenic | 15.0% |
| !! | TATGTATATTGTTTATATAG+AGG | - | chr5_4:33486514-33486533 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTCTTTTGATTT+TGG | + | chr5_4:33487136-33487155 | Msa0848640:intron | 15.0% |
| !! | ATGATTAATATTAGATACAA+GGG | - | chr5_4:33487184-33487203 | None:intergenic | 15.0% |
| !! | TATGATTAATATTAGATACA+AGG | - | chr5_4:33487185-33487204 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTTGCAGGAAA+TGG | + | chr5_4:33485637-33485656 | Msa0848640:intron | 20.0% |
| !! | ATTCATGAAACAATTGATAA+TGG | + | chr5_4:33485809-33485828 | Msa0848640:CDS | 20.0% |
| !!! | TCATTCTCTTTTGAAATATT+TGG | - | chr5_4:33485860-33485879 | None:intergenic | 20.0% |
| !!! | TTACATAACATACCTTTTTA+AGG | - | chr5_4:33486090-33486109 | None:intergenic | 20.0% |
| !! | AAATCTTACATATGACATAT+AGG | - | chr5_4:33486196-33486215 | None:intergenic | 20.0% |
| !! | ACAAAAGTTGTCAAAAAAAA+TGG | - | chr5_4:33486358-33486377 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTGCAGGAAA+TGG | + | chr5_4:33485637-33485656 | Msa0848640:intron | 20.0% |
| !! | ATTCATGAAACAATTGATAA+TGG | + | chr5_4:33485809-33485828 | Msa0848640:CDS | 20.0% |
| !!! | TCATTCTCTTTTGAAATATT+TGG | - | chr5_4:33485860-33485879 | None:intergenic | 20.0% |
| !!! | TTACATAACATACCTTTTTA+AGG | - | chr5_4:33486090-33486109 | None:intergenic | 20.0% |
| !! | AAATCTTACATATGACATAT+AGG | - | chr5_4:33486196-33486215 | None:intergenic | 20.0% |
| !! | ACAAAAGTTGTCAAAAAAAA+TGG | - | chr5_4:33486358-33486377 | None:intergenic | 20.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | + | chr5_4:33485497-33485516 | Msa0848640:intron | 25.0% |
| ! | TAATCAACCATCTTTGAATT+TGG | - | chr5_4:33485546-33485565 | None:intergenic | 25.0% |
| ! | TCAAGAACAAAACAAACAAT+TGG | + | chr5_4:33485751-33485770 | Msa0848640:CDS | 25.0% |
| ! | CAAGAACAAAACAAACAATT+GGG | + | chr5_4:33485752-33485771 | Msa0848640:CDS | 25.0% |
| ! | AAGAACAAAACAAACAATTG+GGG | + | chr5_4:33485753-33485772 | Msa0848640:CDS | 25.0% |
| !!! | TAACATACCTTTTTAAGGTT+AGG | - | chr5_4:33486085-33486104 | None:intergenic | 25.0% |
| !! | ATTCTAAGAGTTAGCTAATA+GGG | - | chr5_4:33486123-33486142 | None:intergenic | 25.0% |
| ! | TACATATGACATATAGGAAT+TGG | - | chr5_4:33486190-33486209 | None:intergenic | 25.0% |
| !!! | GTGTTATTTGAACAACTATT+TGG | - | chr5_4:33486490-33486509 | None:intergenic | 25.0% |
| ! | CTTTGACAAATAATTATGAG+CGG | + | chr5_4:33486540-33486559 | Msa0848640:intron | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | + | chr5_4:33487206-33487225 | Msa0848640:intron | 25.0% |
| !!! | TTATTTTATAGTTGGGTGAA+GGG | + | chr5_4:33487207-33487226 | Msa0848640:intron | 25.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | + | chr5_4:33485497-33485516 | Msa0848640:intron | 25.0% |
| ! | TAATCAACCATCTTTGAATT+TGG | - | chr5_4:33485546-33485565 | None:intergenic | 25.0% |
| ! | TCAAGAACAAAACAAACAAT+TGG | + | chr5_4:33485751-33485770 | Msa0848640:CDS | 25.0% |
| ! | CAAGAACAAAACAAACAATT+GGG | + | chr5_4:33485752-33485771 | Msa0848640:CDS | 25.0% |
| ! | AAGAACAAAACAAACAATTG+GGG | + | chr5_4:33485753-33485772 | Msa0848640:CDS | 25.0% |
| !!! | TAACATACCTTTTTAAGGTT+AGG | - | chr5_4:33486085-33486104 | None:intergenic | 25.0% |
| !! | ATTCTAAGAGTTAGCTAATA+GGG | - | chr5_4:33486123-33486142 | None:intergenic | 25.0% |
| ! | TACATATGACATATAGGAAT+TGG | - | chr5_4:33486190-33486209 | None:intergenic | 25.0% |
| !!! | GTGTTATTTGAACAACTATT+TGG | - | chr5_4:33486490-33486509 | None:intergenic | 25.0% |
| ! | CTTTGACAAATAATTATGAG+CGG | + | chr5_4:33486540-33486559 | Msa0848640:intron | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | + | chr5_4:33487206-33487225 | Msa0848640:intron | 25.0% |
| !!! | TTATTTTATAGTTGGGTGAA+GGG | + | chr5_4:33487207-33487226 | Msa0848640:intron | 25.0% |
| ! | TTGATGATACTTTCATTGCT+CGG | - | chr5_4:33485460-33485479 | None:intergenic | 30.0% |
| CATCTTTGAATTTGGAAAAC+AGG | - | chr5_4:33485538-33485557 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCAAATTCAAAGA+TGG | + | chr5_4:33485536-33485555 | Msa0848640:intron | 30.0% |
| ! | CGAATACAATATATTTGCTG+AGG | + | chr5_4:33485661-33485680 | Msa0848640:CDS | 30.0% |
| ! | AATTTTCTTGATGCAGATGT+GGG | + | chr5_4:33485695-33485714 | Msa0848640:CDS | 30.0% |
| ! | GTGATTCATGTTTTCCAATT+CGG | - | chr5_4:33485903-33485922 | None:intergenic | 30.0% |
| ACTCAACAGAAACATCAAAA+GGG | + | chr5_4:33485921-33485940 | Msa0848640:CDS | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | + | chr5_4:33485969-33485988 | Msa0848640:CDS | 30.0% | |
| TCTTGTTCCTAACCTTAAAA+AGG | + | chr5_4:33486075-33486094 | Msa0848640:CDS | 30.0% | |
| ! | GATTCTAAGAGTTAGCTAAT+AGG | - | chr5_4:33486124-33486143 | None:intergenic | 30.0% |
| ACTTTATCTCTTTATTGCCT+TGG | + | chr5_4:33486412-33486431 | Msa0848640:intron | 30.0% | |
| AAAAAATTGCACGAAAACCA+AGG | - | chr5_4:33486432-33486451 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCACAACTTCCAAA+CGG | - | chr5_4:33486762-33486781 | None:intergenic | 30.0% |
| !! | TAGGAAAACAAGTGTTGATT+CGG | + | chr5_4:33486887-33486906 | Msa0848640:CDS | 30.0% |
| AGATACAAGGGTAAATTTCA+TGG | - | chr5_4:33487172-33487191 | None:intergenic | 30.0% | |
| ! | TTGATGATACTTTCATTGCT+CGG | - | chr5_4:33485460-33485479 | None:intergenic | 30.0% |
| CATCTTTGAATTTGGAAAAC+AGG | - | chr5_4:33485538-33485557 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCAAATTCAAAGA+TGG | + | chr5_4:33485536-33485555 | Msa0848640:intron | 30.0% |
| ! | CGAATACAATATATTTGCTG+AGG | + | chr5_4:33485661-33485680 | Msa0848640:CDS | 30.0% |
| ! | AATTTTCTTGATGCAGATGT+GGG | + | chr5_4:33485695-33485714 | Msa0848640:CDS | 30.0% |
| ! | GTGATTCATGTTTTCCAATT+CGG | - | chr5_4:33485903-33485922 | None:intergenic | 30.0% |
| ACTCAACAGAAACATCAAAA+GGG | + | chr5_4:33485921-33485940 | Msa0848640:CDS | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | + | chr5_4:33485969-33485988 | Msa0848640:CDS | 30.0% | |
| TCTTGTTCCTAACCTTAAAA+AGG | + | chr5_4:33486075-33486094 | Msa0848640:CDS | 30.0% | |
| ! | GATTCTAAGAGTTAGCTAAT+AGG | - | chr5_4:33486124-33486143 | None:intergenic | 30.0% |
| ACTTTATCTCTTTATTGCCT+TGG | + | chr5_4:33486412-33486431 | Msa0848640:intron | 30.0% | |
| AAAAAATTGCACGAAAACCA+AGG | - | chr5_4:33486432-33486451 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCACAACTTCCAAA+CGG | - | chr5_4:33486762-33486781 | None:intergenic | 30.0% |
| !! | TAGGAAAACAAGTGTTGATT+CGG | + | chr5_4:33486887-33486906 | Msa0848640:CDS | 30.0% |
| AGATACAAGGGTAAATTTCA+TGG | - | chr5_4:33487172-33487191 | None:intergenic | 30.0% | |
| CATCTGCATCAAGAAAATTC+AGG | - | chr5_4:33485694-33485713 | None:intergenic | 35.0% | |
| ! | GAATTTTCTTGATGCAGATG+TGG | + | chr5_4:33485694-33485713 | Msa0848640:CDS | 35.0% |
| GCTAAGATCATTTGTGGAAA+TGG | - | chr5_4:33485780-33485799 | None:intergenic | 35.0% | |
| !! | TGACTTGCTAAGATCATTTG+TGG | - | chr5_4:33485786-33485805 | None:intergenic | 35.0% |
| ! | TTCATGTTTTCCAATTCGGT+TGG | - | chr5_4:33485899-33485918 | None:intergenic | 35.0% |
| CACTCAACAGAAACATCAAA+AGG | + | chr5_4:33485920-33485939 | Msa0848640:CDS | 35.0% | |
| AGAAACATCAAAAGGGTCAT+TGG | + | chr5_4:33485928-33485947 | Msa0848640:CDS | 35.0% | |
| GAAAGAGCTTAAAAACCGTT+TGG | + | chr5_4:33486744-33486763 | Msa0848640:CDS | 35.0% | |
| TAAAAACCGTTTGGAAGTTG+TGG | + | chr5_4:33486753-33486772 | Msa0848640:CDS | 35.0% | |
| AATAACAGTGTCTTACCCTT+TGG | + | chr5_4:33486985-33487004 | Msa0848640:CDS | 35.0% | |
| CATCTGCATCAAGAAAATTC+AGG | - | chr5_4:33485694-33485713 | None:intergenic | 35.0% | |
| ! | GAATTTTCTTGATGCAGATG+TGG | + | chr5_4:33485694-33485713 | Msa0848640:CDS | 35.0% |
| GCTAAGATCATTTGTGGAAA+TGG | - | chr5_4:33485780-33485799 | None:intergenic | 35.0% | |
| !! | TGACTTGCTAAGATCATTTG+TGG | - | chr5_4:33485786-33485805 | None:intergenic | 35.0% |
| ! | TTCATGTTTTCCAATTCGGT+TGG | - | chr5_4:33485899-33485918 | None:intergenic | 35.0% |
| CACTCAACAGAAACATCAAA+AGG | + | chr5_4:33485920-33485939 | Msa0848640:CDS | 35.0% | |
| AGAAACATCAAAAGGGTCAT+TGG | + | chr5_4:33485928-33485947 | Msa0848640:CDS | 35.0% | |
| GAAAGAGCTTAAAAACCGTT+TGG | + | chr5_4:33486744-33486763 | Msa0848640:CDS | 35.0% | |
| TAAAAACCGTTTGGAAGTTG+TGG | + | chr5_4:33486753-33486772 | Msa0848640:CDS | 35.0% | |
| AATAACAGTGTCTTACCCTT+TGG | + | chr5_4:33486985-33487004 | Msa0848640:CDS | 35.0% | |
| AAGTATCATCAATCAGCAGC+TGG | + | chr5_4:33485468-33485487 | Msa0848640:CDS | 40.0% | |
| TCATGGAAAGGATCACATCA+TGG | + | chr5_4:33486000-33486019 | Msa0848640:CDS | 40.0% | |
| TGAAGATTCGTCATCATGTG+AGG | + | chr5_4:33486813-33486832 | Msa0848640:CDS | 40.0% | |
| ! | TGTTGCTTCACCATTTCAAG+TGG | + | chr5_4:33486852-33486871 | Msa0848640:CDS | 40.0% |
| ACTCTTGCTTCCACTTGAAA+TGG | - | chr5_4:33486865-33486884 | None:intergenic | 40.0% | |
| ! | GGGGCTTCTGGTTAAAATTA+TGG | + | chr5_4:33486930-33486949 | Msa0848640:CDS | 40.0% |
| TCGAGTGTAGAATCTCCAAA+GGG | - | chr5_4:33487003-33487022 | None:intergenic | 40.0% | |
| TCACAAGTTCCTTTATGCTC+AGG | - | chr5_4:33487238-33487257 | None:intergenic | 40.0% | |
| AAGTATCATCAATCAGCAGC+TGG | + | chr5_4:33485468-33485487 | Msa0848640:CDS | 40.0% | |
| TCATGGAAAGGATCACATCA+TGG | + | chr5_4:33486000-33486019 | Msa0848640:CDS | 40.0% | |
| TGAAGATTCGTCATCATGTG+AGG | + | chr5_4:33486813-33486832 | Msa0848640:CDS | 40.0% | |
| ! | TGTTGCTTCACCATTTCAAG+TGG | + | chr5_4:33486852-33486871 | Msa0848640:CDS | 40.0% |
| ACTCTTGCTTCCACTTGAAA+TGG | - | chr5_4:33486865-33486884 | None:intergenic | 40.0% | |
| ! | GGGGCTTCTGGTTAAAATTA+TGG | + | chr5_4:33486930-33486949 | Msa0848640:CDS | 40.0% |
| TCGAGTGTAGAATCTCCAAA+GGG | - | chr5_4:33487003-33487022 | None:intergenic | 40.0% | |
| TCACAAGTTCCTTTATGCTC+AGG | - | chr5_4:33487238-33487257 | None:intergenic | 40.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | + | chr5_4:33485481-33485500 | Msa0848640:CDS | 45.0% | |
| TTTCTTGATGCAGATGTGGG+AGG | + | chr5_4:33485698-33485717 | Msa0848640:CDS | 45.0% | |
| TTCTTGATGCAGATGTGGGA+GGG | + | chr5_4:33485699-33485718 | Msa0848640:CDS | 45.0% | |
| ATCAGTGTCTCCAACCGAAT+TGG | + | chr5_4:33485886-33485905 | Msa0848640:CDS | 45.0% | |
| !!! | ACGAGGCCTTTTGCTTTTTG+AGG | - | chr5_4:33485978-33485997 | None:intergenic | 45.0% |
| TGCAAGAGCAATGAAGCTCT+GGG | - | chr5_4:33486053-33486072 | None:intergenic | 45.0% | |
| !! | CTGCATATGCATGGTTTGGT+CGG | - | chr5_4:33486790-33486809 | None:intergenic | 45.0% |
| ATCGCTGCATATGCATGGTT+TGG | - | chr5_4:33486794-33486813 | None:intergenic | 45.0% | |
| TCTTCATCGCTGCATATGCA+TGG | - | chr5_4:33486799-33486818 | None:intergenic | 45.0% | |
| !! | CAAGTGGAAGCAAGAGTGTT+AGG | + | chr5_4:33486868-33486887 | Msa0848640:CDS | 45.0% |
| !! | GTTGATTCGGTTCCAATGCA+AGG | + | chr5_4:33486900-33486919 | Msa0848640:CDS | 45.0% |
| ! | TTCCAATGCAAGGAGCACAA+GGG | + | chr5_4:33486910-33486929 | Msa0848640:CDS | 45.0% |
| GTCGAGTGTAGAATCTCCAA+AGG | - | chr5_4:33487004-33487023 | None:intergenic | 45.0% | |
| CGACATTACCATCATTGCTC+AGG | + | chr5_4:33487020-33487039 | Msa0848640:CDS | 45.0% | |
| AGGGTACAACCTGAGCATAA+AGG | + | chr5_4:33487226-33487245 | Msa0848640:CDS | 45.0% | |
| ACTTGTGAAGAACGTACGCA+TGG | + | chr5_4:33487250-33487269 | Msa0848640:CDS | 45.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | + | chr5_4:33485481-33485500 | Msa0848640:CDS | 45.0% | |
| TTTCTTGATGCAGATGTGGG+AGG | + | chr5_4:33485698-33485717 | Msa0848640:CDS | 45.0% | |
| TTCTTGATGCAGATGTGGGA+GGG | + | chr5_4:33485699-33485718 | Msa0848640:CDS | 45.0% | |
| ATCAGTGTCTCCAACCGAAT+TGG | + | chr5_4:33485886-33485905 | Msa0848640:CDS | 45.0% | |
| !!! | ACGAGGCCTTTTGCTTTTTG+AGG | - | chr5_4:33485978-33485997 | None:intergenic | 45.0% |
| TGCAAGAGCAATGAAGCTCT+GGG | - | chr5_4:33486053-33486072 | None:intergenic | 45.0% | |
| !! | CTGCATATGCATGGTTTGGT+CGG | - | chr5_4:33486790-33486809 | None:intergenic | 45.0% |
| ATCGCTGCATATGCATGGTT+TGG | - | chr5_4:33486794-33486813 | None:intergenic | 45.0% | |
| TCTTCATCGCTGCATATGCA+TGG | - | chr5_4:33486799-33486818 | None:intergenic | 45.0% | |
| !! | CAAGTGGAAGCAAGAGTGTT+AGG | + | chr5_4:33486868-33486887 | Msa0848640:CDS | 45.0% |
| !! | GTTGATTCGGTTCCAATGCA+AGG | + | chr5_4:33486900-33486919 | Msa0848640:CDS | 45.0% |
| ! | TTCCAATGCAAGGAGCACAA+GGG | + | chr5_4:33486910-33486929 | Msa0848640:CDS | 45.0% |
| GTCGAGTGTAGAATCTCCAA+AGG | - | chr5_4:33487004-33487023 | None:intergenic | 45.0% | |
| CGACATTACCATCATTGCTC+AGG | + | chr5_4:33487020-33487039 | Msa0848640:CDS | 45.0% | |
| AGGGTACAACCTGAGCATAA+AGG | + | chr5_4:33487226-33487245 | Msa0848640:CDS | 45.0% | |
| ACTTGTGAAGAACGTACGCA+TGG | + | chr5_4:33487250-33487269 | Msa0848640:CDS | 45.0% | |
| !!! | TTTATATTTTGAAATATTTA+GGG | + | chr5_4:33486246-33486265 | Msa0848640:intron | 5.0% |
| !!! | TTTATATTTTGAAATATTTA+GGG | + | chr5_4:33486246-33486265 | Msa0848640:intron | 5.0% |
| TGATCCTTTCCATGAGCACG+AGG | - | chr5_4:33485995-33486014 | None:intergenic | 50.0% | |
| CTGCAAGAGCAATGAAGCTC+TGG | - | chr5_4:33486054-33486073 | None:intergenic | 50.0% | |
| ! | GTTCCAATGCAAGGAGCACA+AGG | + | chr5_4:33486909-33486928 | Msa0848640:CDS | 50.0% |
| ! | TCCAATGCAAGGAGCACAAG+GGG | + | chr5_4:33486911-33486930 | Msa0848640:CDS | 50.0% |
| GGTAGCTACCTGAGCAATGA+TGG | - | chr5_4:33487031-33487050 | None:intergenic | 50.0% | |
| TGATCCTTTCCATGAGCACG+AGG | - | chr5_4:33485995-33486014 | None:intergenic | 50.0% | |
| CTGCAAGAGCAATGAAGCTC+TGG | - | chr5_4:33486054-33486073 | None:intergenic | 50.0% | |
| ! | GTTCCAATGCAAGGAGCACA+AGG | + | chr5_4:33486909-33486928 | Msa0848640:CDS | 50.0% |
| ! | TCCAATGCAAGGAGCACAAG+GGG | + | chr5_4:33486911-33486930 | Msa0848640:CDS | 50.0% |
| GGTAGCTACCTGAGCAATGA+TGG | - | chr5_4:33487031-33487050 | None:intergenic | 50.0% | |
| AGCAAAAGGCCTCGTGCTCA+TGG | + | chr5_4:33485983-33486002 | Msa0848640:CDS | 55.0% | |
| AAGGCCTCGTGCTCATGGAA+AGG | + | chr5_4:33485988-33486007 | Msa0848640:CDS | 55.0% | |
| AGCAAAAGGCCTCGTGCTCA+TGG | + | chr5_4:33485983-33486002 | Msa0848640:CDS | 55.0% | |
| AAGGCCTCGTGCTCATGGAA+AGG | + | chr5_4:33485988-33486007 | Msa0848640:CDS | 55.0% | |
| GCCCCTTGTGCTCCTTGCAT+TGG | - | chr5_4:33486915-33486934 | None:intergenic | 60.0% | |
| ! | CAAGGAGCACAAGGGGCTTC+TGG | + | chr5_4:33486918-33486937 | Msa0848640:CDS | 60.0% |
| GCCCCTTGTGCTCCTTGCAT+TGG | - | chr5_4:33486915-33486934 | None:intergenic | 60.0% | |
| ! | CAAGGAGCACAAGGGGCTTC+TGG | + | chr5_4:33486918-33486937 | Msa0848640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 33485440 | 33487298 | 33485440 | ID=Msa0848640;Name=Msa0848640 |
| chr5_4 | mRNA | 33485440 | 33487298 | 33485440 | ID=Msa0848640-mRNA-1;Parent=Msa0848640;Name=Msa0848640-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|308 |
| chr5_4 | exon | 33485440 | 33485502 | 33485440 | ID=Msa0848640-mRNA-1:exon:11616;Parent=Msa0848640-mRNA-1 |
| chr5_4 | exon | 33485653 | 33486096 | 33485653 | ID=Msa0848640-mRNA-1:exon:11617;Parent=Msa0848640-mRNA-1 |
| chr5_4 | exon | 33486703 | 33487041 | 33486703 | ID=Msa0848640-mRNA-1:exon:11618;Parent=Msa0848640-mRNA-1 |
| chr5_4 | exon | 33487218 | 33487298 | 33487218 | ID=Msa0848640-mRNA-1:exon:11619;Parent=Msa0848640-mRNA-1 |
| chr5_4 | CDS | 33485440 | 33485502 | 33485440 | ID=Msa0848640-mRNA-1:cds;Parent=Msa0848640-mRNA-1 |
| chr5_4 | CDS | 33485653 | 33486096 | 33485653 | ID=Msa0848640-mRNA-1:cds;Parent=Msa0848640-mRNA-1 |
| chr5_4 | CDS | 33486703 | 33487041 | 33486703 | ID=Msa0848640-mRNA-1:cds;Parent=Msa0848640-mRNA-1 |
| chr5_4 | CDS | 33487218 | 33487298 | 33487218 | ID=Msa0848640-mRNA-1:cds;Parent=Msa0848640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
