Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848680 | XP_013456258.1 | 83.591 | 323 | 35 | 3 | 1 | 305 | 1 | 323 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848680 | sp|Q9T072|BH025_ARATH | 40.887 | 203 | 99 | 6 | 121 | 305 | 128 | 327 | 2.50e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848680 | A0A072UKL2 | 83.591 | 323 | 35 | 3 | 1 | 305 | 1 | 323 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0848680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0848640 | Msa0848680 | 0.854230 | 1.413774e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848680 | MtrunA17_Chr4g0033281 | 83.591 | 323 | 35 | 3 | 1 | 305 | 1 | 323 | 0.0 | 514 |
| Msa0848680 | MtrunA17_Chr4g0033291 | 78.994 | 338 | 32 | 6 | 1 | 308 | 1 | 329 | 2.22e-178 | 495 |
| Msa0848680 | MtrunA17_Chr4g0033391 | 76.506 | 332 | 37 | 5 | 1 | 305 | 1 | 318 | 1.14e-174 | 486 |
| Msa0848680 | MtrunA17_Chr2g0307131 | 57.995 | 369 | 79 | 7 | 1 | 307 | 1 | 355 | 1.71e-126 | 365 |
| Msa0848680 | MtrunA17_Chr6g0468491 | 61.146 | 314 | 94 | 7 | 23 | 308 | 1 | 314 | 3.23e-120 | 347 |
| Msa0848680 | MtrunA17_Chr2g0307141 | 56.334 | 371 | 88 | 8 | 1 | 308 | 1 | 360 | 1.82e-116 | 340 |
| Msa0848680 | MtrunA17_Chr6g0468461 | 50.760 | 329 | 111 | 7 | 1 | 291 | 1 | 316 | 1.94e-90 | 273 |
| Msa0848680 | MtrunA17_Chr7g0225901 | 56.250 | 272 | 76 | 7 | 23 | 283 | 1 | 240 | 1.74e-87 | 262 |
| Msa0848680 | MtrunA17_Chr4g0054621 | 47.977 | 346 | 138 | 11 | 1 | 308 | 1 | 342 | 2.20e-85 | 260 |
| Msa0848680 | MtrunA17_Chr4g0054581 | 57.322 | 239 | 83 | 4 | 88 | 308 | 142 | 379 | 6.86e-81 | 249 |
| Msa0848680 | MtrunA17_Chr4g0054581 | 55.696 | 79 | 28 | 3 | 1 | 77 | 1 | 74 | 9.01e-15 | 74.3 |
| Msa0848680 | MtrunA17_Chr5g0400621 | 41.975 | 324 | 145 | 9 | 17 | 307 | 20 | 333 | 3.00e-61 | 197 |
| Msa0848680 | MtrunA17_Chr5g0400661 | 35.088 | 342 | 157 | 9 | 13 | 303 | 7 | 334 | 1.47e-44 | 154 |
| Msa0848680 | MtrunA17_Chr4g0002801 | 41.176 | 204 | 99 | 6 | 122 | 304 | 128 | 331 | 5.21e-41 | 145 |
| Msa0848680 | MtrunA17_Chr5g0400641 | 51.875 | 160 | 59 | 5 | 144 | 289 | 1 | 156 | 9.91e-41 | 139 |
| Msa0848680 | MtrunA17_Chr2g0280161 | 43.243 | 185 | 92 | 2 | 134 | 305 | 168 | 352 | 4.73e-40 | 143 |
| Msa0848680 | MtrunA17_Chr4g0002781 | 38.298 | 235 | 119 | 7 | 92 | 304 | 120 | 350 | 8.69e-40 | 142 |
| Msa0848680 | MtrunA17_Chr4g0054551 | 38.647 | 207 | 111 | 4 | 107 | 302 | 123 | 324 | 7.16e-39 | 139 |
| Msa0848680 | MtrunA17_Chr8g0336681 | 38.660 | 194 | 102 | 2 | 128 | 304 | 143 | 336 | 2.65e-38 | 138 |
| Msa0848680 | MtrunA17_Chr4g0049331 | 39.614 | 207 | 103 | 3 | 115 | 305 | 109 | 309 | 3.39e-38 | 137 |
| Msa0848680 | MtrunA17_Chr4g0054561 | 38.164 | 207 | 112 | 4 | 107 | 302 | 123 | 324 | 6.04e-38 | 137 |
| Msa0848680 | MtrunA17_Chr4g0054571 | 45.405 | 185 | 84 | 4 | 138 | 305 | 147 | 331 | 1.88e-37 | 135 |
| Msa0848680 | MtrunA17_Chr2g0333621 | 38.916 | 203 | 112 | 3 | 117 | 307 | 113 | 315 | 2.82e-37 | 135 |
| Msa0848680 | MtrunA17_Chr2g0333541 | 42.781 | 187 | 91 | 5 | 130 | 301 | 81 | 266 | 9.38e-36 | 130 |
| Msa0848680 | MtrunA17_Chr2g0333641 | 37.727 | 220 | 119 | 5 | 93 | 302 | 95 | 306 | 1.02e-35 | 130 |
| Msa0848680 | MtrunA17_Chr5g0400671 | 35.266 | 207 | 106 | 4 | 116 | 303 | 126 | 323 | 3.09e-35 | 130 |
| Msa0848680 | MtrunA17_Chr2g0333611 | 37.968 | 187 | 104 | 5 | 130 | 305 | 32 | 217 | 1.74e-32 | 119 |
| Msa0848680 | MtrunA17_Chr7g0249811 | 37.379 | 206 | 125 | 3 | 100 | 304 | 127 | 329 | 2.08e-32 | 122 |
| Msa0848680 | MtrunA17_Chr4g0002831 | 36.810 | 163 | 96 | 5 | 143 | 302 | 45 | 203 | 5.82e-25 | 99.8 |
| Msa0848680 | MtrunA17_Chr7g0233441 | 37.241 | 145 | 79 | 2 | 164 | 302 | 57 | 195 | 5.59e-23 | 94.0 |
| Msa0848680 | MtrunA17_Chr4g0002851 | 38.849 | 139 | 77 | 2 | 164 | 302 | 65 | 195 | 6.05e-22 | 91.3 |
| Msa0848680 | MtrunA17_Chr8g0366751 | 30.120 | 166 | 85 | 2 | 133 | 267 | 444 | 609 | 1.44e-15 | 77.0 |
| Msa0848680 | MtrunA17_Chr8g0346161 | 26.891 | 238 | 140 | 8 | 56 | 260 | 187 | 423 | 4.27e-15 | 75.5 |
| Msa0848680 | MtrunA17_Chr1g0185621 | 31.944 | 144 | 76 | 3 | 141 | 264 | 475 | 616 | 3.20e-14 | 73.2 |
| Msa0848680 | MtrunA17_Chr7g0275821 | 30.519 | 154 | 101 | 2 | 137 | 284 | 244 | 397 | 4.04e-14 | 72.4 |
| Msa0848680 | MtrunA17_Chr8g0346151 | 30.000 | 150 | 76 | 5 | 115 | 240 | 248 | 392 | 8.84e-14 | 71.6 |
| Msa0848680 | MtrunA17_Chr5g0411341 | 29.282 | 181 | 75 | 4 | 126 | 267 | 474 | 640 | 3.89e-13 | 69.7 |
| Msa0848680 | MtrunA17_Chr7g0260841 | 36.082 | 97 | 52 | 1 | 108 | 194 | 312 | 408 | 4.77e-12 | 66.2 |
| Msa0848680 | MtrunA17_Chr8g0365711 | 27.684 | 177 | 101 | 6 | 126 | 280 | 227 | 398 | 8.53e-12 | 65.5 |
| Msa0848680 | MtrunA17_Chr3g0131691 | 27.128 | 188 | 116 | 4 | 127 | 294 | 284 | 470 | 3.37e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848680 | AT2G22750.3 | 33.429 | 347 | 166 | 13 | 8 | 306 | 4 | 333 | 1.69e-36 | 134 |
| Msa0848680 | AT4G37850.2 | 40.887 | 203 | 99 | 6 | 121 | 305 | 128 | 327 | 2.54e-36 | 133 |
| Msa0848680 | AT4G37850.1 | 40.887 | 203 | 99 | 6 | 121 | 305 | 128 | 327 | 2.54e-36 | 133 |
| Msa0848680 | AT2G22760.1 | 40.212 | 189 | 97 | 5 | 130 | 303 | 108 | 295 | 5.70e-36 | 131 |
| Msa0848680 | AT2G22750.5 | 32.941 | 340 | 164 | 12 | 15 | 306 | 6 | 329 | 6.51e-36 | 132 |
| Msa0848680 | AT2G22750.4 | 33.429 | 347 | 165 | 14 | 8 | 306 | 4 | 332 | 3.57e-35 | 130 |
| Msa0848680 | AT2G22750.2 | 37.759 | 241 | 112 | 7 | 99 | 306 | 70 | 305 | 1.92e-34 | 127 |
| Msa0848680 | AT2G22750.1 | 37.759 | 241 | 111 | 8 | 99 | 306 | 70 | 304 | 2.96e-33 | 124 |
| Msa0848680 | AT2G22770.1 | 37.234 | 188 | 93 | 2 | 140 | 302 | 131 | 318 | 4.41e-30 | 116 |
| Msa0848680 | AT2G22760.2 | 40.476 | 168 | 85 | 4 | 130 | 283 | 108 | 274 | 5.56e-30 | 115 |
| Msa0848680 | AT5G46760.1 | 32.178 | 202 | 98 | 8 | 123 | 287 | 393 | 592 | 3.00e-18 | 85.5 |
| Msa0848680 | AT4G17880.1 | 32.110 | 218 | 118 | 7 | 78 | 265 | 340 | 557 | 2.59e-17 | 82.8 |
| Msa0848680 | AT1G32640.1 | 32.903 | 155 | 83 | 3 | 126 | 262 | 433 | 584 | 2.02e-15 | 77.0 |
| Msa0848680 | AT2G46510.1 | 37.931 | 116 | 54 | 3 | 133 | 238 | 377 | 484 | 1.25e-14 | 74.7 |
| Msa0848680 | AT1G01260.1 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 3.52e-13 | 70.5 |
| Msa0848680 | AT1G01260.2 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 3.52e-13 | 70.5 |
| Msa0848680 | AT1G01260.3 | 29.114 | 158 | 87 | 3 | 131 | 280 | 420 | 560 | 3.52e-13 | 70.5 |
| Msa0848680 | AT4G16430.1 | 46.575 | 73 | 35 | 1 | 126 | 194 | 301 | 373 | 1.69e-12 | 68.2 |
| Msa0848680 | AT4G09820.1 | 24.658 | 292 | 171 | 9 | 20 | 306 | 269 | 516 | 2.62e-12 | 67.8 |
| Msa0848680 | AT5G46830.1 | 54.839 | 62 | 24 | 1 | 137 | 194 | 335 | 396 | 1.00e-11 | 65.9 |
Find 47 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTCCTAACCTTAAAA+AGG | 0.267726 | 5_4:-33969374 | Msa0848680:intron |
| CAGCAGCTGGTTATCTGATT+TGG | 0.268145 | 5_4:-33969968 | Msa0848680:intron |
| GGGGCTTCTGGTTAAAATTA+TGG | 0.308732 | 5_4:-33968522 | Msa0848680:CDS |
| CAAGGAGCACAAGGGGCTTC+TGG | 0.325264 | 5_4:-33968534 | Msa0848680:CDS |
| GCTAAGATCATTTGTGGAAA+TGG | 0.327969 | 5_4:+33969672 | None:intergenic |
| TCAAGAACAAAACAAACAAT+TGG | 0.334442 | 5_4:-33969698 | Msa0848680:CDS |
| CAAGTGGAAGCAAGAGTGTT+AGG | 0.334987 | 5_4:-33968584 | Msa0848680:CDS |
| ATTCATGAAACAATTGATAA+TGG | 0.338552 | 5_4:-33969640 | Msa0848680:CDS |
| ATCAGTGTCTCCAACCGAAT+TGG | 0.364748 | 5_4:-33969563 | Msa0848680:CDS |
| CTGCAAGAGCAATGAAGCTC+TGG | 0.379324 | 5_4:+33969398 | None:intergenic |
| CAAGAACAAAACAAACAATT+GGG | 0.390107 | 5_4:-33969697 | Msa0848680:CDS |
| ATCGCTGCATATGCATGGTT+TGG | 0.407010 | 5_4:+33968661 | None:intergenic |
| ACTCTTGCTTCCACTTGAAA+TGG | 0.409697 | 5_4:+33968590 | None:intergenic |
| AGAAACATCAAAAGGGTCAT+TGG | 0.411401 | 5_4:-33969521 | Msa0848680:CDS |
| AATAACAGTGTCTTACCCTT+TGG | 0.416567 | 5_4:-33968467 | Msa0848680:CDS |
| GCCCCTTGTGCTCCTTGCAT+TGG | 0.417499 | 5_4:+33968540 | None:intergenic |
| TCACAAGTTCCTTTATGCTC+AGG | 0.418425 | 5_4:+33968217 | None:intergenic |
| CATCTGCATCAAGAAAATTC+AGG | 0.444660 | 5_4:+33969758 | None:intergenic |
| TAGGAAAACAAGTGTTGATT+CGG | 0.449123 | 5_4:-33968565 | Msa0848680:CDS |
| AGCAAAAGGCCTCGTGCTCA+TGG | 0.450095 | 5_4:-33969466 | Msa0848680:CDS |
| CACTCAACAGAAACATCAAA+AGG | 0.454180 | 5_4:-33969529 | Msa0848680:CDS |
| TGACTTGCTAAGATCATTTG+TGG | 0.465292 | 5_4:+33969666 | None:intergenic |
| TTGATGATACTTTCATTGCT+CGG | 0.501130 | 5_4:+33969992 | None:intergenic |
| GGTAGCTACCTGAGCAATGA+TGG | 0.511294 | 5_4:+33968424 | None:intergenic |
| TTCTTGATGCAGATGTGGGA+GGG | 0.544131 | 5_4:-33969750 | Msa0848680:CDS |
| CGACATTACCATCATTGCTC+AGG | 0.544333 | 5_4:-33968432 | Msa0848680:intron |
| GTTGATTCGGTTCCAATGCA+AGG | 0.545125 | 5_4:-33968552 | Msa0848680:CDS |
| GTTCCAATGCAAGGAGCACA+AGG | 0.563766 | 5_4:-33968543 | Msa0848680:CDS |
| TGCAAGAGCAATGAAGCTCT+GGG | 0.565077 | 5_4:+33969399 | None:intergenic |
| ACTCAACAGAAACATCAAAA+GGG | 0.567021 | 5_4:-33969528 | Msa0848680:CDS |
| TCTTCATCGCTGCATATGCA+TGG | 0.570607 | 5_4:+33968656 | None:intergenic |
| AAGTATCATCAATCAGCAGC+TGG | 0.573007 | 5_4:-33969981 | Msa0848680:CDS |
| AAGGCCTCGTGCTCATGGAA+AGG | 0.577326 | 5_4:-33969461 | Msa0848680:CDS |
| TGTTGCTTCACCATTTCAAG+TGG | 0.586046 | 5_4:-33968600 | Msa0848680:CDS |
| TTTCTTGATGCAGATGTGGG+AGG | 0.588172 | 5_4:-33969751 | Msa0848680:CDS |
| GTCGAGTGTAGAATCTCCAA+AGG | 0.590011 | 5_4:+33968451 | None:intergenic |
| TCCAATGCAAGGAGCACAAG+GGG | 0.595381 | 5_4:-33968541 | Msa0848680:CDS |
| TCATGGAAAGGATCACATCA+TGG | 0.611063 | 5_4:-33969449 | Msa0848680:CDS |
| TCGAGTGTAGAATCTCCAAA+GGG | 0.615421 | 5_4:+33968452 | None:intergenic |
| CTGCATATGCATGGTTTGGT+CGG | 0.617639 | 5_4:+33968665 | None:intergenic |
| AGGGTACAACCTGAGCATAA+AGG | 0.620360 | 5_4:-33968226 | Msa0848680:CDS |
| CGAATACAATATATTTGCTG+AGG | 0.624364 | 5_4:-33969788 | Msa0848680:CDS |
| TGAAGATTCGTCATCATGTG+AGG | 0.642706 | 5_4:-33968639 | Msa0848680:CDS |
| TTCCAATGCAAGGAGCACAA+GGG | 0.644827 | 5_4:-33968542 | Msa0848680:CDS |
| AAGAACAAAACAAACAATTG+GGG | 0.650416 | 5_4:-33969696 | Msa0848680:CDS |
| ACTTGTGAAGAACGTACGCA+TGG | 0.661373 | 5_4:-33968202 | Msa0848680:CDS |
| TGATCCTTTCCATGAGCACG+AGG | 0.668624 | 5_4:+33969457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATTTTTTTTTGC+AGG | - | chr5_4:33968367-33968386 | Msa0848680:intron | 10.0% |
| !!! | GTTTATATTTTGAAATATTT+AGG | - | chr5_4:33968979-33968998 | Msa0848680:intron | 10.0% |
| !!! | ATTTTTTTTTGTGTAAATTA+TGG | - | chr5_4:33969178-33969197 | Msa0848680:intron | 10.0% |
| !!! | AGAAAAATCAATTTTATTTA+AGG | - | chr5_4:33969359-33969378 | Msa0848680:intron | 10.0% |
| !!! | TTTATTATTTTTCTTTTAGA+TGG | - | chr5_4:33969417-33969436 | Msa0848680:CDS | 10.0% |
| !! | AATTAAAAAAAAATTGTGAT+AGG | + | chr5_4:33969785-33969804 | None:intergenic | 10.0% |
| !!! | ATCATATATTATTTTATAGT+TGG | - | chr5_4:33969932-33969951 | Msa0848680:intron | 10.0% |
| !!! | TCATATATTATTTTATAGTT+GGG | - | chr5_4:33969933-33969952 | Msa0848680:intron | 10.0% |
| !!! | ATTTTTTTATTTTTTTTTGC+AGG | - | chr5_4:33968367-33968386 | Msa0848680:intron | 10.0% |
| !!! | GTTTATATTTTGAAATATTT+AGG | - | chr5_4:33968979-33968998 | Msa0848680:intron | 10.0% |
| !!! | ATTTTTTTTTGTGTAAATTA+TGG | - | chr5_4:33969178-33969197 | Msa0848680:intron | 10.0% |
| !!! | AGAAAAATCAATTTTATTTA+AGG | - | chr5_4:33969359-33969378 | Msa0848680:intron | 10.0% |
| !!! | TTTATTATTTTTCTTTTAGA+TGG | - | chr5_4:33969417-33969436 | Msa0848680:CDS | 10.0% |
| !! | AATTAAAAAAAAATTGTGAT+AGG | + | chr5_4:33969785-33969804 | None:intergenic | 10.0% |
| !!! | ATCATATATTATTTTATAGT+TGG | - | chr5_4:33969932-33969951 | Msa0848680:intron | 10.0% |
| !!! | TCATATATTATTTTATAGTT+GGG | - | chr5_4:33969933-33969952 | Msa0848680:intron | 10.0% |
| !!! | CTTACATTTAACTTAATTAA+TGG | + | chr5_4:33968321-33968340 | None:intergenic | 15.0% |
| !! | TATGTATATTGTTTATATAG+AGG | + | chr5_4:33969247-33969266 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTCTTTTGATTT+TGG | - | chr5_4:33969869-33969888 | Msa0848680:intron | 15.0% |
| !! | ATGATTAATATTAGATACAA+GGG | + | chr5_4:33969917-33969936 | None:intergenic | 15.0% |
| !! | TATGATTAATATTAGATACA+AGG | + | chr5_4:33969918-33969937 | None:intergenic | 15.0% |
| !!! | CTTACATTTAACTTAATTAA+TGG | + | chr5_4:33968321-33968340 | None:intergenic | 15.0% |
| !! | TATGTATATTGTTTATATAG+AGG | + | chr5_4:33969247-33969266 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTCTTTTGATTT+TGG | - | chr5_4:33969869-33969888 | Msa0848680:intron | 15.0% |
| !! | ATGATTAATATTAGATACAA+GGG | + | chr5_4:33969917-33969936 | None:intergenic | 15.0% |
| !! | TATGATTAATATTAGATACA+AGG | + | chr5_4:33969918-33969937 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTTGCAGGAAA+TGG | - | chr5_4:33968373-33968392 | Msa0848680:intron | 20.0% |
| !! | ATTCATGAAACAATTGATAA+TGG | - | chr5_4:33968545-33968564 | Msa0848680:CDS | 20.0% |
| !!! | TCATTCTCTTTTGAAATATT+TGG | + | chr5_4:33968596-33968615 | None:intergenic | 20.0% |
| !!! | TTACATAACATACCTTTTTA+AGG | + | chr5_4:33968826-33968845 | None:intergenic | 20.0% |
| !! | TACATATGACATATATGAAT+TGG | + | chr5_4:33968926-33968945 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTGCAGGAAA+TGG | - | chr5_4:33968373-33968392 | Msa0848680:intron | 20.0% |
| !! | ATTCATGAAACAATTGATAA+TGG | - | chr5_4:33968545-33968564 | Msa0848680:CDS | 20.0% |
| !!! | TCATTCTCTTTTGAAATATT+TGG | + | chr5_4:33968596-33968615 | None:intergenic | 20.0% |
| !!! | TTACATAACATACCTTTTTA+AGG | + | chr5_4:33968826-33968845 | None:intergenic | 20.0% |
| !! | TACATATGACATATATGAAT+TGG | + | chr5_4:33968926-33968945 | None:intergenic | 20.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | - | chr5_4:33968233-33968252 | Msa0848680:CDS | 25.0% |
| ! | TAATCAACCATCTTTGAATT+TGG | + | chr5_4:33968282-33968301 | None:intergenic | 25.0% |
| ! | TCAAGAACAAAACAAACAAT+TGG | - | chr5_4:33968487-33968506 | Msa0848680:CDS | 25.0% |
| ! | CAAGAACAAAACAAACAATT+GGG | - | chr5_4:33968488-33968507 | Msa0848680:CDS | 25.0% |
| ! | AAGAACAAAACAAACAATTG+GGG | - | chr5_4:33968489-33968508 | Msa0848680:CDS | 25.0% |
| !!! | TAACATACCTTTTTAAGGTT+AGG | + | chr5_4:33968821-33968840 | None:intergenic | 25.0% |
| !! | ATTCTAAGAGTTAGCTAATA+GGG | + | chr5_4:33968859-33968878 | None:intergenic | 25.0% |
| ! | CACAAAAGTTGTCAAAAAAA+TGG | + | chr5_4:33969092-33969111 | None:intergenic | 25.0% |
| !!! | GTGTTATTTGAACAACTATT+TGG | + | chr5_4:33969223-33969242 | None:intergenic | 25.0% |
| ! | CTTTGACAAATAATTATGAG+TGG | - | chr5_4:33969273-33969292 | Msa0848680:intron | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr5_4:33969939-33969958 | Msa0848680:intron | 25.0% |
| !!! | TTATTTTATAGTTGGGTGAA+GGG | - | chr5_4:33969940-33969959 | Msa0848680:intron | 25.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | - | chr5_4:33968233-33968252 | Msa0848680:CDS | 25.0% |
| ! | TAATCAACCATCTTTGAATT+TGG | + | chr5_4:33968282-33968301 | None:intergenic | 25.0% |
| ! | TCAAGAACAAAACAAACAAT+TGG | - | chr5_4:33968487-33968506 | Msa0848680:CDS | 25.0% |
| ! | CAAGAACAAAACAAACAATT+GGG | - | chr5_4:33968488-33968507 | Msa0848680:CDS | 25.0% |
| ! | AAGAACAAAACAAACAATTG+GGG | - | chr5_4:33968489-33968508 | Msa0848680:CDS | 25.0% |
| !!! | TAACATACCTTTTTAAGGTT+AGG | + | chr5_4:33968821-33968840 | None:intergenic | 25.0% |
| !! | ATTCTAAGAGTTAGCTAATA+GGG | + | chr5_4:33968859-33968878 | None:intergenic | 25.0% |
| ! | CACAAAAGTTGTCAAAAAAA+TGG | + | chr5_4:33969092-33969111 | None:intergenic | 25.0% |
| !!! | GTGTTATTTGAACAACTATT+TGG | + | chr5_4:33969223-33969242 | None:intergenic | 25.0% |
| ! | CTTTGACAAATAATTATGAG+TGG | - | chr5_4:33969273-33969292 | Msa0848680:intron | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr5_4:33969939-33969958 | Msa0848680:intron | 25.0% |
| !!! | TTATTTTATAGTTGGGTGAA+GGG | - | chr5_4:33969940-33969959 | Msa0848680:intron | 25.0% |
| ! | TTGATGATACTTTCATTGCT+CGG | + | chr5_4:33968196-33968215 | None:intergenic | 30.0% |
| CATCTTTGAATTTGGAAAAC+AGG | + | chr5_4:33968274-33968293 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCAAATTCAAAGA+TGG | - | chr5_4:33968272-33968291 | Msa0848680:intron | 30.0% |
| ! | CGAATACAATATATTTGCTG+AGG | - | chr5_4:33968397-33968416 | Msa0848680:intron | 30.0% |
| ! | AATTTTCTTGATGCAGATGT+GGG | - | chr5_4:33968431-33968450 | Msa0848680:intron | 30.0% |
| ! | GTGATTCATGTTTTCCAATT+CGG | + | chr5_4:33968639-33968658 | None:intergenic | 30.0% |
| ACTCAACAGAAACATCAAAA+GGG | - | chr5_4:33968657-33968676 | Msa0848680:CDS | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | - | chr5_4:33968705-33968724 | Msa0848680:CDS | 30.0% | |
| TCTTGTTCCTAACCTTAAAA+AGG | - | chr5_4:33968811-33968830 | Msa0848680:intron | 30.0% | |
| ! | GATTCTAAGAGTTAGCTAAT+AGG | + | chr5_4:33968860-33968879 | None:intergenic | 30.0% |
| ACTTTATCTCTTTATTGCCT+TGG | - | chr5_4:33969145-33969164 | Msa0848680:intron | 30.0% | |
| AAAAAATTGCACGAAAACCA+AGG | + | chr5_4:33969165-33969184 | None:intergenic | 30.0% | |
| GAAAGAGCTTAAAAACCATT+TGG | - | chr5_4:33969477-33969496 | Msa0848680:CDS | 30.0% | |
| TAAAAACCATTTGGAAGTTG+TGG | - | chr5_4:33969486-33969505 | Msa0848680:CDS | 30.0% | |
| !!! | TTTTTTCCACAACTTCCAAA+TGG | + | chr5_4:33969495-33969514 | None:intergenic | 30.0% |
| !! | TAGGAAAACAAGTGTTGATT+CGG | - | chr5_4:33969620-33969639 | Msa0848680:CDS | 30.0% |
| AGATACAAGGGTAAATTTCA+TGG | + | chr5_4:33969905-33969924 | None:intergenic | 30.0% | |
| ! | TTGATGATACTTTCATTGCT+CGG | + | chr5_4:33968196-33968215 | None:intergenic | 30.0% |
| CATCTTTGAATTTGGAAAAC+AGG | + | chr5_4:33968274-33968293 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCAAATTCAAAGA+TGG | - | chr5_4:33968272-33968291 | Msa0848680:intron | 30.0% |
| ! | CGAATACAATATATTTGCTG+AGG | - | chr5_4:33968397-33968416 | Msa0848680:intron | 30.0% |
| ! | AATTTTCTTGATGCAGATGT+GGG | - | chr5_4:33968431-33968450 | Msa0848680:intron | 30.0% |
| ! | GTGATTCATGTTTTCCAATT+CGG | + | chr5_4:33968639-33968658 | None:intergenic | 30.0% |
| ACTCAACAGAAACATCAAAA+GGG | - | chr5_4:33968657-33968676 | Msa0848680:CDS | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | - | chr5_4:33968705-33968724 | Msa0848680:CDS | 30.0% | |
| TCTTGTTCCTAACCTTAAAA+AGG | - | chr5_4:33968811-33968830 | Msa0848680:intron | 30.0% | |
| ! | GATTCTAAGAGTTAGCTAAT+AGG | + | chr5_4:33968860-33968879 | None:intergenic | 30.0% |
| ACTTTATCTCTTTATTGCCT+TGG | - | chr5_4:33969145-33969164 | Msa0848680:intron | 30.0% | |
| AAAAAATTGCACGAAAACCA+AGG | + | chr5_4:33969165-33969184 | None:intergenic | 30.0% | |
| GAAAGAGCTTAAAAACCATT+TGG | - | chr5_4:33969477-33969496 | Msa0848680:CDS | 30.0% | |
| TAAAAACCATTTGGAAGTTG+TGG | - | chr5_4:33969486-33969505 | Msa0848680:CDS | 30.0% | |
| !!! | TTTTTTCCACAACTTCCAAA+TGG | + | chr5_4:33969495-33969514 | None:intergenic | 30.0% |
| !! | TAGGAAAACAAGTGTTGATT+CGG | - | chr5_4:33969620-33969639 | Msa0848680:CDS | 30.0% |
| AGATACAAGGGTAAATTTCA+TGG | + | chr5_4:33969905-33969924 | None:intergenic | 30.0% | |
| CATCTGCATCAAGAAAATTC+AGG | + | chr5_4:33968430-33968449 | None:intergenic | 35.0% | |
| ! | GAATTTTCTTGATGCAGATG+TGG | - | chr5_4:33968430-33968449 | Msa0848680:intron | 35.0% |
| GCTAAGATCATTTGTGGAAA+TGG | + | chr5_4:33968516-33968535 | None:intergenic | 35.0% | |
| !! | TGACTTGCTAAGATCATTTG+TGG | + | chr5_4:33968522-33968541 | None:intergenic | 35.0% |
| ! | TTCATGTTTTCCAATTCGGT+TGG | + | chr5_4:33968635-33968654 | None:intergenic | 35.0% |
| CACTCAACAGAAACATCAAA+AGG | - | chr5_4:33968656-33968675 | Msa0848680:CDS | 35.0% | |
| AGAAACATCAAAAGGGTCAT+TGG | - | chr5_4:33968664-33968683 | Msa0848680:CDS | 35.0% | |
| AATAACAGTGTCTTACCCTT+TGG | - | chr5_4:33969718-33969737 | Msa0848680:CDS | 35.0% | |
| CATCTGCATCAAGAAAATTC+AGG | + | chr5_4:33968430-33968449 | None:intergenic | 35.0% | |
| ! | GAATTTTCTTGATGCAGATG+TGG | - | chr5_4:33968430-33968449 | Msa0848680:intron | 35.0% |
| GCTAAGATCATTTGTGGAAA+TGG | + | chr5_4:33968516-33968535 | None:intergenic | 35.0% | |
| !! | TGACTTGCTAAGATCATTTG+TGG | + | chr5_4:33968522-33968541 | None:intergenic | 35.0% |
| ! | TTCATGTTTTCCAATTCGGT+TGG | + | chr5_4:33968635-33968654 | None:intergenic | 35.0% |
| CACTCAACAGAAACATCAAA+AGG | - | chr5_4:33968656-33968675 | Msa0848680:CDS | 35.0% | |
| AGAAACATCAAAAGGGTCAT+TGG | - | chr5_4:33968664-33968683 | Msa0848680:CDS | 35.0% | |
| AATAACAGTGTCTTACCCTT+TGG | - | chr5_4:33969718-33969737 | Msa0848680:CDS | 35.0% | |
| AAGTATCATCAATCAGCAGC+TGG | - | chr5_4:33968204-33968223 | Msa0848680:CDS | 40.0% | |
| TCATGGAAAGGATCACATCA+TGG | - | chr5_4:33968736-33968755 | Msa0848680:CDS | 40.0% | |
| TGAAGATTCGTCATCATGTG+AGG | - | chr5_4:33969546-33969565 | Msa0848680:CDS | 40.0% | |
| ! | TGTTGCTTCACCATTTCAAG+TGG | - | chr5_4:33969585-33969604 | Msa0848680:CDS | 40.0% |
| ACTCTTGCTTCCACTTGAAA+TGG | + | chr5_4:33969598-33969617 | None:intergenic | 40.0% | |
| ! | GGGGCTTCTGGTTAAAATTA+TGG | - | chr5_4:33969663-33969682 | Msa0848680:CDS | 40.0% |
| TCGAGTGTAGAATCTCCAAA+GGG | + | chr5_4:33969736-33969755 | None:intergenic | 40.0% | |
| TCACAAGTTCCTTTATGCTC+AGG | + | chr5_4:33969971-33969990 | None:intergenic | 40.0% | |
| AAGTATCATCAATCAGCAGC+TGG | - | chr5_4:33968204-33968223 | Msa0848680:CDS | 40.0% | |
| TCATGGAAAGGATCACATCA+TGG | - | chr5_4:33968736-33968755 | Msa0848680:CDS | 40.0% | |
| TGAAGATTCGTCATCATGTG+AGG | - | chr5_4:33969546-33969565 | Msa0848680:CDS | 40.0% | |
| ! | TGTTGCTTCACCATTTCAAG+TGG | - | chr5_4:33969585-33969604 | Msa0848680:CDS | 40.0% |
| ACTCTTGCTTCCACTTGAAA+TGG | + | chr5_4:33969598-33969617 | None:intergenic | 40.0% | |
| ! | GGGGCTTCTGGTTAAAATTA+TGG | - | chr5_4:33969663-33969682 | Msa0848680:CDS | 40.0% |
| TCGAGTGTAGAATCTCCAAA+GGG | + | chr5_4:33969736-33969755 | None:intergenic | 40.0% | |
| TCACAAGTTCCTTTATGCTC+AGG | + | chr5_4:33969971-33969990 | None:intergenic | 40.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | - | chr5_4:33968217-33968236 | Msa0848680:CDS | 45.0% | |
| TTTCTTGATGCAGATGTGGG+AGG | - | chr5_4:33968434-33968453 | Msa0848680:CDS | 45.0% | |
| TTCTTGATGCAGATGTGGGA+GGG | - | chr5_4:33968435-33968454 | Msa0848680:CDS | 45.0% | |
| ATCAGTGTCTCCAACCGAAT+TGG | - | chr5_4:33968622-33968641 | Msa0848680:CDS | 45.0% | |
| !!! | ACGAGGCCTTTTGCTTTTTG+AGG | + | chr5_4:33968714-33968733 | None:intergenic | 45.0% |
| TGCAAGAGCAATGAAGCTCT+GGG | + | chr5_4:33968789-33968808 | None:intergenic | 45.0% | |
| !! | CTGCATATGCATGGTTTGGT+CGG | + | chr5_4:33969523-33969542 | None:intergenic | 45.0% |
| ATCGCTGCATATGCATGGTT+TGG | + | chr5_4:33969527-33969546 | None:intergenic | 45.0% | |
| TCTTCATCGCTGCATATGCA+TGG | + | chr5_4:33969532-33969551 | None:intergenic | 45.0% | |
| !! | CAAGTGGAAGCAAGAGTGTT+AGG | - | chr5_4:33969601-33969620 | Msa0848680:CDS | 45.0% |
| !! | GTTGATTCGGTTCCAATGCA+AGG | - | chr5_4:33969633-33969652 | Msa0848680:CDS | 45.0% |
| ! | TTCCAATGCAAGGAGCACAA+GGG | - | chr5_4:33969643-33969662 | Msa0848680:CDS | 45.0% |
| GTCGAGTGTAGAATCTCCAA+AGG | + | chr5_4:33969737-33969756 | None:intergenic | 45.0% | |
| CGACATTACCATCATTGCTC+AGG | - | chr5_4:33969753-33969772 | Msa0848680:CDS | 45.0% | |
| AGGGTACAACCTGAGCATAA+AGG | - | chr5_4:33969959-33969978 | Msa0848680:intron | 45.0% | |
| ACTTGTGAAGAACGTACGCA+TGG | - | chr5_4:33969983-33970002 | Msa0848680:CDS | 45.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | - | chr5_4:33968217-33968236 | Msa0848680:CDS | 45.0% | |
| TTTCTTGATGCAGATGTGGG+AGG | - | chr5_4:33968434-33968453 | Msa0848680:CDS | 45.0% | |
| TTCTTGATGCAGATGTGGGA+GGG | - | chr5_4:33968435-33968454 | Msa0848680:CDS | 45.0% | |
| ATCAGTGTCTCCAACCGAAT+TGG | - | chr5_4:33968622-33968641 | Msa0848680:CDS | 45.0% | |
| !!! | ACGAGGCCTTTTGCTTTTTG+AGG | + | chr5_4:33968714-33968733 | None:intergenic | 45.0% |
| TGCAAGAGCAATGAAGCTCT+GGG | + | chr5_4:33968789-33968808 | None:intergenic | 45.0% | |
| !! | CTGCATATGCATGGTTTGGT+CGG | + | chr5_4:33969523-33969542 | None:intergenic | 45.0% |
| ATCGCTGCATATGCATGGTT+TGG | + | chr5_4:33969527-33969546 | None:intergenic | 45.0% | |
| TCTTCATCGCTGCATATGCA+TGG | + | chr5_4:33969532-33969551 | None:intergenic | 45.0% | |
| !! | CAAGTGGAAGCAAGAGTGTT+AGG | - | chr5_4:33969601-33969620 | Msa0848680:CDS | 45.0% |
| !! | GTTGATTCGGTTCCAATGCA+AGG | - | chr5_4:33969633-33969652 | Msa0848680:CDS | 45.0% |
| ! | TTCCAATGCAAGGAGCACAA+GGG | - | chr5_4:33969643-33969662 | Msa0848680:CDS | 45.0% |
| GTCGAGTGTAGAATCTCCAA+AGG | + | chr5_4:33969737-33969756 | None:intergenic | 45.0% | |
| CGACATTACCATCATTGCTC+AGG | - | chr5_4:33969753-33969772 | Msa0848680:CDS | 45.0% | |
| AGGGTACAACCTGAGCATAA+AGG | - | chr5_4:33969959-33969978 | Msa0848680:intron | 45.0% | |
| ACTTGTGAAGAACGTACGCA+TGG | - | chr5_4:33969983-33970002 | Msa0848680:CDS | 45.0% | |
| !!! | TTTATATTTTGAAATATTTA+GGG | - | chr5_4:33968980-33968999 | Msa0848680:intron | 5.0% |
| !!! | TTTATATTTTGAAATATTTA+GGG | - | chr5_4:33968980-33968999 | Msa0848680:intron | 5.0% |
| TGATCCTTTCCATGAGCACG+AGG | + | chr5_4:33968731-33968750 | None:intergenic | 50.0% | |
| CTGCAAGAGCAATGAAGCTC+TGG | + | chr5_4:33968790-33968809 | None:intergenic | 50.0% | |
| ! | GTTCCAATGCAAGGAGCACA+AGG | - | chr5_4:33969642-33969661 | Msa0848680:CDS | 50.0% |
| ! | TCCAATGCAAGGAGCACAAG+GGG | - | chr5_4:33969644-33969663 | Msa0848680:CDS | 50.0% |
| GGTAGCTACCTGAGCAATGA+TGG | + | chr5_4:33969764-33969783 | None:intergenic | 50.0% | |
| TGATCCTTTCCATGAGCACG+AGG | + | chr5_4:33968731-33968750 | None:intergenic | 50.0% | |
| CTGCAAGAGCAATGAAGCTC+TGG | + | chr5_4:33968790-33968809 | None:intergenic | 50.0% | |
| ! | GTTCCAATGCAAGGAGCACA+AGG | - | chr5_4:33969642-33969661 | Msa0848680:CDS | 50.0% |
| ! | TCCAATGCAAGGAGCACAAG+GGG | - | chr5_4:33969644-33969663 | Msa0848680:CDS | 50.0% |
| GGTAGCTACCTGAGCAATGA+TGG | + | chr5_4:33969764-33969783 | None:intergenic | 50.0% | |
| AGCAAAAGGCCTCGTGCTCA+TGG | - | chr5_4:33968719-33968738 | Msa0848680:CDS | 55.0% | |
| AAGGCCTCGTGCTCATGGAA+AGG | - | chr5_4:33968724-33968743 | Msa0848680:CDS | 55.0% | |
| AGCAAAAGGCCTCGTGCTCA+TGG | - | chr5_4:33968719-33968738 | Msa0848680:CDS | 55.0% | |
| AAGGCCTCGTGCTCATGGAA+AGG | - | chr5_4:33968724-33968743 | Msa0848680:CDS | 55.0% | |
| GCCCCTTGTGCTCCTTGCAT+TGG | + | chr5_4:33969648-33969667 | None:intergenic | 60.0% | |
| ! | CAAGGAGCACAAGGGGCTTC+TGG | - | chr5_4:33969651-33969670 | Msa0848680:CDS | 60.0% |
| GCCCCTTGTGCTCCTTGCAT+TGG | + | chr5_4:33969648-33969667 | None:intergenic | 60.0% | |
| ! | CAAGGAGCACAAGGGGCTTC+TGG | - | chr5_4:33969651-33969670 | Msa0848680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 33968176 | 33970031 | 33968176 | ID=Msa0848680;Name=Msa0848680 |
| chr5_4 | mRNA | 33968176 | 33970031 | 33968176 | ID=Msa0848680-mRNA-1;Parent=Msa0848680;Name=Msa0848680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|308 |
| chr5_4 | exon | 33969969 | 33970031 | 33969969 | ID=Msa0848680-mRNA-1:exon:11637;Parent=Msa0848680-mRNA-1 |
| chr5_4 | exon | 33969375 | 33969818 | 33969375 | ID=Msa0848680-mRNA-1:exon:11636;Parent=Msa0848680-mRNA-1 |
| chr5_4 | exon | 33968433 | 33968771 | 33968433 | ID=Msa0848680-mRNA-1:exon:11635;Parent=Msa0848680-mRNA-1 |
| chr5_4 | exon | 33968176 | 33968256 | 33968176 | ID=Msa0848680-mRNA-1:exon:11634;Parent=Msa0848680-mRNA-1 |
| chr5_4 | CDS | 33969969 | 33970031 | 33969969 | ID=Msa0848680-mRNA-1:cds;Parent=Msa0848680-mRNA-1 |
| chr5_4 | CDS | 33969375 | 33969818 | 33969375 | ID=Msa0848680-mRNA-1:cds;Parent=Msa0848680-mRNA-1 |
| chr5_4 | CDS | 33968433 | 33968771 | 33968433 | ID=Msa0848680-mRNA-1:cds;Parent=Msa0848680-mRNA-1 |
| chr5_4 | CDS | 33968176 | 33968256 | 33968176 | ID=Msa0848680-mRNA-1:cds;Parent=Msa0848680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
