AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850540 MtrunA17_Chr5g0426141 99.645 282 1 0 1 282 1 282 0.0 580
Msa0850540 MtrunA17_Chr3g0115851 81.560 282 52 0 1 282 1 282 1.62e-177 490
Msa0850540 MtrunA17_Chr4g0050381 75.532 282 64 1 1 282 1 277 1.22e-159 445
Msa0850540 MtrunA17_Chr2g0279151 73.404 282 74 1 1 282 1 281 4.47e-151 423
Msa0850540 MtrunA17_Chr2g0317021 60.377 265 104 1 19 282 69 333 1.39e-109 320
Msa0850540 MtrunA17_Chr8g0360351 60.755 265 103 1 19 282 18 282 1.99e-109 318
Msa0850540 MtrunA17_Chr4g0051661 54.251 247 112 1 35 281 152 397 3.49e-87 265
Msa0850540 MtrunA17_Chr3g0136711 41.901 284 158 5 1 281 1 280 3.19e-67 211
Msa0850540 MtrunA17_Chr1g0150451 43.511 262 141 5 23 281 66 323 4.50e-67 212
Msa0850540 MtrunA17_Chr1g0212961 43.478 253 134 6 31 281 92 337 1.78e-61 197
Msa0850540 MtrunA17_Chr3g0126511 40.149 269 154 5 16 281 76 340 1.03e-56 186
Msa0850540 MtrunA17_Chr5g0430481 38.996 259 140 10 35 282 124 375 4.97e-45 156
Msa0850540 MtrunA17_Chr3g0105371 37.452 259 144 10 36 282 87 339 1.01e-41 146
Msa0850540 MtrunA17_Chr3g0105351 37.692 260 142 11 36 282 63 315 5.36e-41 144
Msa0850540 MtrunA17_Chr5g0407161 37.118 229 126 5 65 281 123 345 5.66e-38 137
Msa0850540 MtrunA17_Chr1g0194191 34.583 240 129 6 62 279 114 347 7.84e-37 134
Msa0850540 MtrunA17_Chr3g0138281 35.019 257 140 8 48 282 95 346 3.10e-35 130
Msa0850540 MtrunA17_Chr3g0144111 38.140 215 106 6 88 281 19 227 1.35e-34 125
Msa0850540 MtrunA17_Chr1g0187481 32.743 226 131 4 58 281 71 277 3.24e-33 122
Msa0850540 MtrunA17_Chr1g0166481 35.398 226 121 4 58 281 71 273 1.05e-32 121
Msa0850540 MtrunA17_Chr4g0065141 32.567 261 143 8 48 282 98 351 2.04e-32 122
Msa0850540 MtrunA17_Chr2g0293811 32.061 262 142 8 48 279 74 329 1.13e-31 120
Msa0850540 MtrunA17_Chr6g0483411 36.327 245 122 11 67 282 80 319 2.14e-31 119
Msa0850540 MtrunA17_Chr4g0070871 36.822 258 116 8 66 282 253 504 3.62e-31 121
Msa0850540 MtrunA17_Chr8g0389921 32.686 309 157 11 17 282 135 435 7.69e-30 117
Msa0850540 MtrunA17_Chr4g0001761 29.377 337 158 13 14 282 5 329 3.75e-29 113
Msa0850540 MtrunA17_Chr2g0299981 33.750 320 136 12 35 282 221 536 3.10e-28 113
Msa0850540 MtrunA17_Chr1g0171571 32.129 249 152 7 48 282 400 645 3.80e-28 113
Msa0850540 MtrunA17_Chr1g0158781 34.400 250 137 7 56 282 135 380 2.35e-27 109
Msa0850540 MtrunA17_Chr3g0135961 33.969 262 129 7 62 282 282 540 5.10e-27 109
Msa0850540 MtrunA17_Chr1g0150781 34.483 261 121 8 66 282 290 544 6.06e-27 109
Msa0850540 MtrunA17_Chr5g0435721 34.940 249 136 8 32 262 190 430 1.48e-26 108
Msa0850540 MtrunA17_Chr3g0112291 31.081 296 154 8 30 282 88 376 1.50e-26 107
Msa0850540 MtrunA17_Chr1g0150071 30.108 279 125 11 32 250 21 289 4.69e-26 105
Msa0850540 MtrunA17_Chr3g0136811 27.900 319 151 13 33 282 22 330 5.48e-26 105
Msa0850540 MtrunA17_Chr7g0263281 30.094 319 147 13 31 279 31 343 8.98e-23 96.3
Msa0850540 MtrunA17_Chr4g0066371 25.893 336 192 13 3 282 7 341 3.22e-22 95.1
Msa0850540 MtrunA17_Chr5g0396731 32.900 231 135 9 35 249 73 299 4.58e-22 94.4
Msa0850540 MtrunA17_Chr7g0272061 38.202 178 85 9 126 279 183 359 9.50e-21 90.9
Msa0850540 MtrunA17_Chr6g0486661 28.405 257 140 12 66 279 124 379 1.22e-20 91.7
Msa0850540 MtrunA17_Chr1g0192421 38.049 205 94 12 107 281 149 350 4.18e-20 88.6
Msa0850540 MtrunA17_Chr3g0089721 30.742 283 140 12 35 271 39 311 5.61e-20 88.6
Msa0850540 MtrunA17_Chr1g0213351 28.387 310 151 12 37 279 47 352 1.27e-19 87.8
Msa0850540 MtrunA17_Chr1g0181901 29.213 267 133 11 31 247 36 296 1.30e-19 87.8
Msa0850540 MtrunA17_Chr7g0256771 28.846 260 132 9 35 249 41 292 1.35e-19 86.7
Msa0850540 MtrunA17_Chr3g0089711 30.389 283 141 12 35 271 39 311 2.25e-19 86.7
Msa0850540 MtrunA17_Chr4g0067711 37.073 205 100 11 103 281 151 352 7.02e-19 85.5
Msa0850540 MtrunA17_Chr3g0127091 26.263 297 159 11 33 278 59 346 1.56e-18 84.7
Msa0850540 MtrunA17_Chr1g0209451 30.472 233 138 8 66 279 68 295 3.10e-18 84.0
Msa0850540 MtrunA17_Chr2g0286951 27.444 266 151 11 58 282 78 342 3.15e-18 84.0
Msa0850540 MtrunA17_Chr2g0295401 33.088 272 124 15 62 281 88 353 9.09e-18 82.0
Msa0850540 MtrunA17_Chr1g0153671 28.755 233 142 8 66 279 65 292 3.53e-17 80.9
Msa0850540 MtrunA17_Chr7g0256751 27.273 297 155 13 27 276 36 318 6.32e-17 80.1
Msa0850540 MtrunA17_Chr7g0250061 28.467 274 135 10 66 279 76 348 7.19e-17 79.7
Msa0850540 MtrunA17_Chr7g0271971 28.755 233 142 6 66 279 68 295 1.79e-16 79.0
Msa0850540 MtrunA17_Chr1g0151781 31.799 239 122 10 54 252 55 292 3.00e-16 77.8
Msa0850540 MtrunA17_Chr1g0192471 27.338 278 169 10 26 279 27 295 5.67e-16 77.4
Msa0850540 MtrunA17_Chr1g0211251 28.626 262 132 10 37 249 48 303 5.81e-16 77.4
Msa0850540 MtrunA17_Chr7g0243571 37.580 157 82 6 126 267 188 343 2.06e-15 75.9
Msa0850540 MtrunA17_Chr4g0004971 31.200 250 127 10 62 267 74 322 2.28e-15 75.1
Msa0850540 MtrunA17_Chr3g0133801 28.085 235 141 9 66 279 66 293 6.24e-15 74.3
Msa0850540 MtrunA17_Chr8g0371321 27.206 272 135 10 69 279 82 351 7.83e-15 73.9
Msa0850540 MtrunA17_Chr1g0207571 25.902 305 159 10 37 279 36 335 7.92e-15 73.9
Msa0850540 MtrunA17_Chr4g0068971 36.667 120 61 3 170 279 115 229 1.07e-14 72.4
Msa0850540 MtrunA17_Chr2g0324061 36.264 182 93 10 84 247 146 322 1.67e-14 73.2
Msa0850540 MtrunA17_Chr8g0342431 37.791 172 82 7 133 281 203 372 1.96e-14 72.8
Msa0850540 MtrunA17_Chr7g0225501 31.933 238 136 12 64 279 84 317 7.98e-14 71.2
Msa0850540 MtrunA17_Chr7g0249421 38.037 163 81 8 103 247 183 343 9.16e-14 71.2
Msa0850540 MtrunA17_Chr5g0394181 28.623 276 155 13 37 281 333 597 2.09e-13 70.1
Msa0850540 MtrunA17_Chr1g0175381 24.675 308 160 12 34 279 53 350 2.93e-12 66.2
Msa0850540 MtrunA17_Chr3g0089691 29.557 203 106 7 102 271 27 225 1.26e-11 63.9
Msa0850540 MtrunA17_Chr1g0185141 36.957 138 66 7 160 279 302 436 6.35e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850540 AT1G34750.2 73.050 282 76 0 1 282 1 282 3.09e-155 434
Msa0850540 AT1G34750.1 73.050 282 76 0 1 282 1 282 3.09e-155 434
Msa0850540 AT1G34750.3 73.050 282 76 0 1 282 1 282 3.09e-155 434
Msa0850540 AT1G22280.1 73.404 282 74 1 1 282 1 281 5.65e-151 423
Msa0850540 AT1G22280.3 71.875 288 74 2 1 282 1 287 2.62e-148 417
Msa0850540 AT1G78200.1 63.509 285 99 3 1 282 1 283 4.83e-132 375
Msa0850540 AT1G78200.3 63.509 285 99 3 1 282 1 283 4.83e-132 375
Msa0850540 AT1G78200.2 63.509 285 99 3 1 282 1 283 4.83e-132 375
Msa0850540 AT1G34750.4 70.040 247 72 1 1 247 1 245 4.64e-125 356
Msa0850540 AT2G20630.1 60.920 261 101 1 23 282 19 279 4.12e-114 330
Msa0850540 AT1G78200.5 66.387 238 77 2 48 282 1 238 1.68e-113 327
Msa0850540 AT1G78200.4 66.387 238 77 2 48 282 1 238 1.68e-113 327
Msa0850540 AT4G28400.3 60.385 260 102 1 24 282 2 261 2.45e-111 322
Msa0850540 AT3G15260.2 61.481 270 103 1 14 282 20 289 3.07e-111 323
Msa0850540 AT3G15260.1 61.481 270 103 1 14 282 20 289 3.07e-111 323
Msa0850540 AT2G20630.2 60.385 260 102 1 23 281 19 278 3.11e-111 323
Msa0850540 AT4G28400.1 59.623 265 106 1 19 282 19 283 3.36e-111 323
Msa0850540 AT1G22280.2 72.581 186 50 1 1 186 1 185 3.24e-92 271
Msa0850540 AT4G28400.2 59.729 221 88 1 19 238 19 239 1.39e-89 267
Msa0850540 AT2G34740.1 54.032 248 112 2 35 281 88 334 2.63e-85 259
Msa0850540 AT2G34740.2 54.146 205 92 2 35 238 102 305 4.07e-71 222
Msa0850540 AT2G34740.3 54.146 205 92 2 35 238 84 287 5.32e-71 221
Msa0850540 AT4G31750.2 44.275 262 139 5 23 281 22 279 1.58e-68 215
Msa0850540 AT4G31750.1 44.275 262 139 5 23 281 22 279 1.71e-68 215
Msa0850540 AT4G31750.3 44.275 262 139 5 23 281 22 279 1.71e-68 215
Msa0850540 AT5G10740.1 42.349 281 155 5 4 281 3 279 2.13e-68 216
Msa0850540 AT5G10740.2 42.349 281 155 5 4 281 3 279 2.13e-68 216
Msa0850540 AT5G24940.1 41.993 281 156 5 4 281 3 279 7.27e-67 215
Msa0850540 AT5G53140.1 38.931 262 153 5 24 282 91 348 7.24e-59 193
Msa0850540 AT5G53140.2 38.931 262 153 5 24 282 91 348 7.24e-59 193
Msa0850540 AT1G43900.1 41.270 252 140 6 33 281 122 368 7.15e-57 187
Msa0850540 AT2G33700.1 37.984 258 134 8 44 281 93 344 2.66e-42 149
Msa0850540 AT1G07160.1 40.081 247 130 8 48 281 135 376 3.88e-42 149
Msa0850540 AT2G40180.1 36.742 264 145 9 35 282 129 386 1.74e-40 144
Msa0850540 AT3G62260.3 35.950 242 128 6 62 281 23 259 2.04e-39 139
Msa0850540 AT2G30020.1 39.231 260 140 11 35 282 140 393 3.35e-39 141
Msa0850540 AT3G51470.2 35.600 250 138 9 48 281 41 283 4.16e-39 139
Msa0850540 AT3G62260.2 35.950 242 128 6 62 281 113 349 1.44e-38 139
Msa0850540 AT3G51470.1 35.600 250 138 9 48 281 85 327 1.44e-38 139
Msa0850540 AT3G62260.1 35.950 242 128 6 62 281 112 348 1.58e-38 139
Msa0850540 AT2G25620.1 36.293 259 132 9 48 279 102 354 1.77e-36 134
Msa0850540 AT2G25620.2 36.293 259 132 9 48 279 102 354 1.77e-36 134
Msa0850540 AT3G17250.1 31.290 310 166 9 12 281 91 393 1.30e-33 127
Msa0850540 AT1G48040.1 33.212 274 138 9 43 281 86 349 2.50e-32 123
Msa0850540 AT1G67820.2 35.268 224 135 5 48 266 97 315 4.07e-32 122
Msa0850540 AT5G57050.2 33.882 304 141 11 35 282 73 372 6.52e-32 122
Msa0850540 AT5G57050.1 33.882 304 141 11 35 282 113 412 7.98e-32 122
Msa0850540 AT1G67820.1 35.268 224 135 5 48 266 133 351 9.83e-32 122
Msa0850540 AT2G29380.1 33.108 296 146 12 31 282 74 361 1.50e-31 120
Msa0850540 AT4G26080.1 33.887 301 140 11 35 282 129 423 6.61e-31 120
Msa0850540 AT5G59220.1 35.391 243 128 7 30 249 107 343 5.24e-29 114
Msa0850540 AT2G40860.1 31.399 293 181 8 6 282 361 649 3.53e-28 114
Msa0850540 AT2G40860.4 31.399 293 181 8 6 282 263 551 3.77e-28 113
Msa0850540 AT5G51760.2 30.462 325 162 9 18 282 62 382 4.27e-28 111
Msa0850540 AT5G51760.1 30.818 318 156 9 25 282 99 412 7.05e-28 111
Msa0850540 AT1G07430.1 34.025 241 129 9 34 249 120 355 2.01e-27 110
Msa0850540 AT1G18030.1 32.245 245 132 11 67 282 110 349 8.04e-26 104
Msa0850540 AT4G31860.1 28.528 326 152 13 26 282 17 330 8.74e-26 104
Msa0850540 AT2G40860.2 31.071 280 173 8 6 269 361 636 2.33e-25 105
Msa0850540 AT3G23360.1 29.004 231 128 6 56 281 60 259 3.06e-25 101
Msa0850540 AT1G72770.4 32.103 271 124 9 66 282 238 502 8.33e-25 103
Msa0850540 AT1G72770.1 32.103 271 124 9 66 282 238 502 8.33e-25 103
Msa0850540 AT1G72770.3 32.103 271 124 9 66 282 238 502 8.33e-25 103
Msa0850540 AT4G31860.3 30.496 282 124 12 26 247 17 286 9.62e-25 100
Msa0850540 AT2G25070.1 27.900 319 151 13 33 282 22 330 1.55e-24 101
Msa0850540 AT2G25070.2 27.900 319 151 13 33 282 22 330 1.55e-24 101
Msa0850540 AT3G11410.1 32.245 245 132 8 34 249 104 343 1.62e-23 99.4
Msa0850540 AT1G17550.1 30.483 269 132 7 66 282 237 502 1.73e-23 100
Msa0850540 AT1G17550.2 30.483 269 132 7 66 282 237 502 1.73e-23 100
Msa0850540 AT2G20050.2 29.921 254 137 11 66 279 143 395 8.87e-23 98.6
Msa0850540 AT4G27800.1 29.667 300 145 13 33 278 58 345 9.33e-23 97.1
Msa0850540 AT2G20050.1 29.921 254 137 11 66 279 143 395 1.01e-22 98.2
Msa0850540 AT3G05640.2 40.223 179 83 7 126 281 172 349 5.74e-22 94.4
Msa0850540 AT3G05640.1 40.223 179 83 7 126 281 172 349 5.74e-22 94.4
Msa0850540 AT3G05640.3 40.223 179 83 7 126 281 172 349 5.74e-22 94.4
Msa0850540 AT3G16800.4 42.188 192 84 10 116 282 65 254 8.29e-22 92.0
Msa0850540 AT3G16800.6 42.188 192 84 10 116 282 65 254 8.29e-22 92.0
Msa0850540 AT4G08260.1 31.250 224 116 7 65 282 18 209 8.47e-22 91.3
Msa0850540 AT4G31860.2 30.258 271 117 12 26 236 17 275 1.05e-21 92.4
Msa0850540 AT3G16800.2 42.487 193 82 11 116 282 160 349 2.64e-21 92.4
Msa0850540 AT3G16800.1 42.487 193 82 11 116 282 160 349 2.64e-21 92.4
Msa0850540 AT3G16800.3 42.487 193 82 11 116 282 160 349 2.64e-21 92.4
Msa0850540 AT5G27930.1 39.326 178 82 8 126 279 177 352 4.03e-21 92.0
Msa0850540 AT5G27930.2 39.326 178 82 8 126 279 177 352 4.03e-21 92.0
Msa0850540 AT1G18030.2 33.163 196 102 8 67 238 110 300 7.24e-21 90.5
Msa0850540 AT3G12620.2 29.545 308 150 12 37 279 50 355 1.29e-20 90.9
Msa0850540 AT3G12620.1 29.545 308 150 12 37 279 50 355 1.29e-20 90.9
Msa0850540 AT1G68410.4 32.051 234 133 10 66 279 73 300 2.72e-20 90.5
Msa0850540 AT1G68410.3 32.051 234 133 10 66 279 73 300 2.72e-20 90.5
Msa0850540 AT1G68410.1 32.051 234 133 10 66 279 73 300 2.72e-20 90.5
Msa0850540 AT1G68410.2 32.051 234 133 10 66 279 73 300 2.72e-20 90.5
Msa0850540 AT4G27800.2 29.682 283 138 13 33 266 58 328 3.99e-20 89.0
Msa0850540 AT4G27800.3 29.181 281 140 12 33 266 58 326 4.39e-20 88.6
Msa0850540 AT5G02760.1 31.679 262 118 10 37 247 39 290 6.43e-20 89.0
Msa0850540 AT1G09160.2 31.330 233 136 8 66 279 68 295 3.02e-19 87.4
Msa0850540 AT1G09160.1 31.330 233 136 8 66 279 68 295 3.02e-19 87.4
Msa0850540 AT3G55050.1 26.129 310 158 10 37 279 51 356 1.23e-18 85.1
Msa0850540 AT3G55050.2 26.129 310 158 10 37 279 51 356 1.23e-18 85.1
Msa0850540 AT3G27140.1 30.864 243 106 9 48 282 1 189 1.56e-18 83.2
Msa0850540 AT1G47380.1 27.839 273 164 11 26 279 33 291 2.42e-18 84.7
Msa0850540 AT3G51370.1 28.261 276 133 10 66 279 79 351 6.78e-18 83.2
Msa0850540 AT3G51370.3 28.261 276 133 10 66 279 79 351 6.78e-18 83.2
Msa0850540 AT5G66080.1 27.675 271 135 8 69 279 85 354 5.58e-17 80.5
Msa0850540 AT5G06750.3 28.522 291 142 11 37 273 57 335 6.41e-17 80.5
Msa0850540 AT5G06750.1 28.522 291 142 11 37 273 57 335 6.41e-17 80.5
Msa0850540 AT5G01700.1 38.217 157 81 6 126 267 112 267 1.37e-16 79.0
Msa0850540 AT1G79630.2 37.430 179 89 7 125 281 151 328 2.08e-16 79.0
Msa0850540 AT1G79630.7 37.430 179 89 7 125 281 151 328 2.08e-16 79.0
Msa0850540 AT1G79630.1 37.640 178 88 7 126 281 222 398 2.28e-16 79.3
Msa0850540 AT1G79630.8 37.640 178 88 7 126 281 218 394 2.56e-16 79.0
Msa0850540 AT1G79630.6 37.430 179 89 7 125 281 111 288 2.60e-16 78.6
Msa0850540 AT1G79630.3 37.430 179 89 7 125 281 111 288 2.60e-16 78.6
Msa0850540 AT1G79630.4 37.430 179 89 7 125 281 111 288 2.60e-16 78.6
Msa0850540 AT1G79630.5 37.430 179 89 7 125 281 111 288 2.60e-16 78.6
Msa0850540 AT5G01700.2 38.217 157 81 6 126 267 161 316 2.69e-16 78.6
Msa0850540 AT4G38520.2 25.566 309 165 9 37 281 48 355 3.84e-16 78.2
Msa0850540 AT4G38520.1 25.566 309 165 9 37 281 48 355 3.84e-16 78.2
Msa0850540 AT1G16220.1 36.517 178 90 7 126 281 199 375 3.04e-15 75.9
Msa0850540 AT3G17090.1 26.537 309 150 11 37 279 59 356 3.23e-15 75.5
Msa0850540 AT4G03415.1 37.634 186 92 10 84 247 148 331 4.21e-15 75.5
Msa0850540 AT4G03415.3 37.634 186 92 10 84 247 148 331 4.21e-15 75.5
Msa0850540 AT4G03415.2 37.634 186 92 10 84 247 148 331 4.21e-15 75.5
Msa0850540 AT5G59220.2 32.143 196 104 7 30 202 107 296 7.74e-15 73.6
Msa0850540 AT2G05050.1 42.424 99 51 2 190 282 92 190 1.65e-14 70.9
Msa0850540 AT3G51370.2 28.936 235 107 8 104 279 33 266 2.28e-14 72.0
Msa0850540 AT3G17090.2 26.641 259 133 9 37 249 59 306 2.58e-14 72.4
Msa0850540 AT3G02750.2 38.037 163 81 7 103 247 192 352 9.89e-14 71.2
Msa0850540 AT3G02750.1 38.037 163 81 7 103 247 192 352 9.89e-14 71.2
Msa0850540 AT3G63340.6 26.966 267 124 10 76 282 191 446 1.23e-13 71.2
Msa0850540 AT3G63340.3 26.966 267 124 10 76 282 191 446 1.23e-13 71.2
Msa0850540 AT3G63340.10 26.966 267 124 10 76 282 191 446 1.23e-13 71.2
Msa0850540 AT3G63340.4 26.966 267 124 10 76 282 191 446 1.23e-13 71.2
Msa0850540 AT3G63340.5 26.966 267 124 10 76 282 191 446 1.35e-13 71.2
Msa0850540 AT3G63340.1 26.966 267 124 10 76 282 191 446 1.35e-13 71.2
Msa0850540 AT3G63340.8 26.966 267 124 10 76 282 191 446 1.41e-13 71.2
Msa0850540 AT3G63340.7 26.966 267 124 10 76 282 191 446 1.42e-13 71.2
Msa0850540 AT3G63340.11 26.966 267 124 10 76 282 191 446 1.46e-13 71.2
Msa0850540 AT3G63340.12 26.966 267 124 10 76 282 191 446 1.70e-13 70.9
Msa0850540 AT5G36250.1 35.165 182 100 8 103 267 183 363 2.61e-13 70.1
Msa0850540 AT2G40860.3 28.033 239 153 7 6 229 361 595 4.41e-13 69.7
Msa0850540 AT3G63320.2 29.167 216 92 8 126 282 85 298 4.93e-13 68.9
Msa0850540 AT5G57050.3 31.156 199 103 9 35 203 113 307 1.02e-12 67.8
Msa0850540 AT5G26010.1 29.515 227 98 10 66 247 73 282 1.05e-12 67.8
Msa0850540 AT5G66080.2 28.085 235 109 7 104 279 17 250 1.08e-12 67.4
Msa0850540 AT3G63320.1 29.167 216 92 8 126 282 168 381 1.73e-12 67.4
Msa0850540 AT3G63340.2 34.752 141 75 5 158 282 340 479 1.82e-12 67.8
Msa0850540 AT5G06750.2 32.461 191 81 6 126 273 68 253 7.59e-12 65.1
Msa0850540 AT5G27930.3 40.945 127 56 7 126 235 177 301 2.31e-11 63.5

Find 78 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTAATTTGTTAAAGAAAA+AGG 0.215171 5_4:+40117342 Msa0850540:three_prime_UTR
TCTTTCAAATAGTTCTGATT+TGG 0.235348 5_4:+40115428 Msa0850540:CDS
TTATTTCAAGTGTGAATATT+AGG 0.238324 5_4:+40117437 Msa0850540:three_prime_UTR
CTTTCAAATAGTTCTGATTT+GGG 0.264270 5_4:+40115429 Msa0850540:CDS
TCAGCATAGACACTTCAATT+TGG 0.277484 5_4:-40113603 None:intergenic
AAGTTTATAACACTAAAATA+AGG 0.287790 5_4:+40117218 Msa0850540:three_prime_UTR
CGCAGGTTTCGCTTTGATCA+AGG 0.310527 5_4:+40113473 Msa0850540:five_prime_UTR
CTGGCTGTTGCTCGTGCATT+TGG 0.315037 5_4:+40116637 Msa0850540:CDS
GGTTATATGCATCTAATTAC+TGG 0.330719 5_4:+40117502 Msa0850540:three_prime_UTR
GGCGATGTCCCTAGAGTAAA+TGG 0.335195 5_4:+40116610 Msa0850540:intron
TATAAAATGTGTCACCTTAC+CGG 0.363217 5_4:-40113394 None:intergenic
AAGTGTCTATGCTGAGAATT+TGG 0.364552 5_4:+40113611 Msa0850540:five_prime_UTR
GCAAGTACAAGGAAAAGAAT+TGG 0.366641 5_4:+40114936 Msa0850540:CDS
CATGAAGGATCGATAAAGTA+TGG 0.366721 5_4:+40114850 Msa0850540:CDS
TGCTTCAGCTGTTAATTGCT+TGG 0.366726 5_4:-40117104 None:intergenic
TCATCATGCAGCACCGGAAA+AGG 0.368195 5_4:+40114820 Msa0850540:CDS
TAATCAATGGTCAAATGTTA+TGG 0.372279 5_4:+40115484 Msa0850540:CDS
ATATATCTTGTGTTGTGGTT+AGG 0.380847 5_4:+40117149 Msa0850540:CDS
CGAGCGGTTCTTTCAAGAAA+AGG 0.395093 5_4:+40115528 Msa0850540:CDS
CTACATGGCATGCCAATTCA+TGG 0.397475 5_4:+40117255 Msa0850540:three_prime_UTR
CGAGGCATCATTGAGAATAA+AGG 0.401779 5_4:+40115594 Msa0850540:CDS
TGATTGATACACTTCAAATC+AGG 0.403443 5_4:+40117181 Msa0850540:three_prime_UTR
TGCTATTTACGATGGCCACT+TGG 0.406749 5_4:+40114966 Msa0850540:CDS
CTTGTGTTGTGGTTAGGTTT+AGG 0.413014 5_4:+40117155 Msa0850540:CDS
CAAGTACAAGGAAAAGAATT+GGG 0.420606 5_4:+40114937 Msa0850540:CDS
GATTGGCTCGCCCTTTCACT+AGG 0.421592 5_4:-40114879 None:intergenic
CCCTAGAGTAAATGGACAAC+TGG 0.433175 5_4:+40116618 Msa0850540:CDS
GTAATCCTCCATCGGATGAT+TGG 0.433894 5_4:-40114896 None:intergenic
TTCTTGCAAGTGATGGACTT+TGG 0.443247 5_4:+40116740 Msa0850540:CDS
ATGATGCCTCGTTCTGTGTT+AGG 0.446979 5_4:-40115582 None:intergenic
ATATTATACTACAACATACT+TGG 0.453030 5_4:+40117291 Msa0850540:three_prime_UTR
ACATCAGTACTATGTACATC+GGG 0.454693 5_4:-40116694 None:intergenic
AAATACCTCCTTTAGAATGT+TGG 0.457459 5_4:-40115028 None:intergenic
TGTTGTTGCGGTCCATGAAT+TGG 0.459468 5_4:-40117267 None:intergenic
TTTCTAATTCTTGCAAGTGA+TGG 0.473579 5_4:+40116733 Msa0850540:CDS
GAAACCTGCGACAGAAGAAA+AGG 0.478285 5_4:-40113460 None:intergenic
AATTGCTTGGCTGCTTTCAG+TGG 0.490672 5_4:-40117091 None:intergenic
CATCATGCAGCACCGGAAAA+GGG 0.498344 5_4:+40114821 Msa0850540:CDS
AATAGTTCTGATTTGGGGCG+TGG 0.501689 5_4:+40115435 Msa0850540:CDS
TATACTACAACATACTTGGT+TGG 0.502629 5_4:+40117295 Msa0850540:three_prime_UTR
GCAGGTTTCGCTTTGATCAA+GGG 0.506013 5_4:+40113474 Msa0850540:five_prime_UTR
TAATTCTAATTGGACCGGTA+AGG 0.507446 5_4:+40113380 Msa0850540:five_prime_UTR
GCCAGTTGTCCATTTACTCT+AGG 0.508307 5_4:-40116619 None:intergenic
TGCAAGTGATGGACTTTGGA+AGG 0.511963 5_4:+40116744 Msa0850540:CDS
AGTTTATAACACTAAAATAA+GGG 0.516345 5_4:+40117219 Msa0850540:three_prime_UTR
CTGATCGCAAATGAGACTTT+AGG 0.519194 5_4:-40116669 None:intergenic
AGCATATCTGAACACAGATC+AGG 0.521538 5_4:+40115401 Msa0850540:CDS
GTTACTGCAATATTAATCAA+TGG 0.538044 5_4:+40115471 Msa0850540:CDS
TATGGTTTCACCCTAGTGAA+AGG 0.538203 5_4:+40114868 Msa0850540:CDS
CCAGTTGTCCATTTACTCTA+GGG 0.544818 5_4:-40116618 None:intergenic
ATGGTTTCACCCTAGTGAAA+GGG 0.552190 5_4:+40114869 Msa0850540:CDS
ATATGCATCTAATTACTGGT+TGG 0.552669 5_4:+40117506 Msa0850540:three_prime_UTR
GCTATTTACGATGGCCACTT+GGG 0.558564 5_4:+40114967 Msa0850540:CDS
CTATATGTAGATTGATTGAG+AGG 0.561346 5_4:+40117481 Msa0850540:three_prime_UTR
GGTTTGTTTGCTATTTACGA+TGG 0.579056 5_4:+40114958 Msa0850540:CDS
TTTCAAATAGTTCTGATTTG+GGG 0.579147 5_4:+40115430 Msa0850540:CDS
TGTGATGAGAGAAACAGAAA+AGG 0.583644 5_4:-40113523 None:intergenic
ATTGGCTCGCCCTTTCACTA+GGG 0.585955 5_4:-40114878 None:intergenic
ACGCGTTCATCATGCAGCAC+CGG 0.586106 5_4:+40114814 Msa0850540:CDS
TACATCAGTACTATGTACAT+CGG 0.588150 5_4:-40116695 None:intergenic
AGTTCTGATTTGGGGCGTGG+TGG 0.597508 5_4:+40115438 Msa0850540:CDS
TAGTATAATATGTGTTGTTG+CGG 0.599460 5_4:-40117279 None:intergenic
CTTGCACAAAATTAGCGACA+TGG 0.605684 5_4:-40114918 None:intergenic
ATGTTATGGACAGCTAATGT+CGG 0.606535 5_4:+40115498 Msa0850540:CDS
TCAGGTAATGGCAAATCAAG+AGG 0.609971 5_4:+40117039 Msa0850540:intron
GCGACATGGTAATCCTCCAT+CGG 0.615852 5_4:-40114904 None:intergenic
ATTAGGAATCTACATGAGAG+AGG 0.624084 5_4:+40117454 Msa0850540:three_prime_UTR
AGATGATATATCTTGTGTTG+TGG 0.625754 5_4:+40117144 Msa0850540:CDS
TTAGGAATCTACATGAGAGA+GGG 0.632018 5_4:+40117455 Msa0850540:three_prime_UTR
GGTATATACATATCTCTACA+TGG 0.634690 5_4:+40117240 Msa0850540:three_prime_UTR
GGCATCATTGAGAATAAAGG+CGG 0.642545 5_4:+40115597 Msa0850540:CDS
AGGGCGAGCCAATCATCCGA+TGG 0.643114 5_4:+40114888 Msa0850540:CDS
GCGAGCCAATCATCCGATGG+AGG 0.648560 5_4:+40114891 Msa0850540:CDS
CATGAGCCTAACACAGAACG+AGG 0.661928 5_4:+40115576 Msa0850540:CDS
AAGGTACTTGATCTCCCAAG+TGG 0.696355 5_4:-40114981 None:intergenic
GGTGCTGCATGATGAACGCG+TGG 0.706168 5_4:-40114812 None:intergenic
CATCAGTACTATGTACATCG+GGG 0.756382 5_4:-40116693 None:intergenic
TAATGTCGGAGATTCACGAG+CGG 0.779182 5_4:+40115512 Msa0850540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTAAAAATTGTTAAATT+TGG - chr5_4:40113366-40113385 None:intergenic 10.0%
!!! TAACAATTTTTAATTCTAAT+TGG + chr5_4:40113370-40113389 Msa0850540:five_prime_UTR 10.0%
!! AAAAAAAAAATGAAAAAAAG+AGG - chr5_4:40116138-40116157 None:intergenic 10.0%
!!! TATTTGAAATTATTAGTATA+TGG - chr5_4:40116227-40116246 None:intergenic 10.0%
!!! AATATGATTTTTTGTAACTT+AGG - chr5_4:40113423-40113442 None:intergenic 15.0%
!!! TTTTATCTGTTTTTTGTTAT+TGG + chr5_4:40113847-40113866 Msa0850540:intron 15.0%
!!! TAATCTTTAATGTTTTGTTT+TGG + chr5_4:40114384-40114403 Msa0850540:intron 15.0%
!! ATGCAAAAAATTAAAACAAA+AGG - chr5_4:40114436-40114455 None:intergenic 15.0%
!! TACAATAAAAACAAAGATTA+TGG - chr5_4:40114640-40114659 None:intergenic 15.0%
!!! ATACTTTTGATTTTTATCAT+AGG + chr5_4:40115341-40115360 Msa0850540:intron 15.0%
!!! TACTTTTGATTTTTATCATA+GGG + chr5_4:40115342-40115361 Msa0850540:intron 15.0%
!!! AAGAAACTATATTTTTTGTT+TGG + chr5_4:40115759-40115778 Msa0850540:intron 15.0%
!! AAGTTTATAACACTAAAATA+AGG + chr5_4:40117218-40117237 Msa0850540:three_prime_UTR 15.0%
!! AGTTTATAACACTAAAATAA+GGG + chr5_4:40117219-40117238 Msa0850540:three_prime_UTR 15.0%
!!! ATTTTTAATTCTAATTGGAC+CGG + chr5_4:40113375-40113394 Msa0850540:five_prime_UTR 20.0%
!!! TTTAAAGTCTTCTTTTTCTA+AGG + chr5_4:40113701-40113720 Msa0850540:CDS 20.0%
!! TACTAATGATAAAACAGAAT+TGG - chr5_4:40113950-40113969 None:intergenic 20.0%
!!! TGTTTTTGATAAAACAGAAT+TGG - chr5_4:40113986-40114005 None:intergenic 20.0%
!! AAAATGTCAAAGATTAACTT+GGG - chr5_4:40114084-40114103 None:intergenic 20.0%
!! AAAAATGTCAAAGATTAACT+TGG - chr5_4:40114085-40114104 None:intergenic 20.0%
!!! ATCTTTGACATTTTTCATTT+TGG + chr5_4:40114090-40114109 Msa0850540:intron 20.0%
!!! TCTTTGACATTTTTCATTTT+GGG + chr5_4:40114091-40114110 Msa0850540:intron 20.0%
!! ATGGAATAATAATACTAAGA+TGG - chr5_4:40114226-40114245 None:intergenic 20.0%
!! TCAATTGTATTTGATTATCT+TGG + chr5_4:40114264-40114283 Msa0850540:intron 20.0%
!! CAATTGTATTTGATTATCTT+GGG + chr5_4:40114265-40114284 Msa0850540:intron 20.0%
!! CCAAAAAATTCATAAACATT+AGG - chr5_4:40114411-40114430 None:intergenic 20.0%
!!! CCTAATGTTTATGAATTTTT+TGG + chr5_4:40114408-40114427 Msa0850540:intron 20.0%
!!! ATTATGTTTTAATCTCGTAA+TGG + chr5_4:40114508-40114527 Msa0850540:intron 20.0%
!! ATAGATCTTAAAATACATAC+AGG - chr5_4:40114560-40114579 None:intergenic 20.0%
!! TATTGTAGTTGAAATAACTT+AGG + chr5_4:40114653-40114672 Msa0850540:intron 20.0%
!! TTGAAATAACTTAGGATATT+GGG + chr5_4:40114661-40114680 Msa0850540:intron 20.0%
!!! AGATTTTTCTGTAAATATGA+AGG - chr5_4:40115003-40115022 None:intergenic 20.0%
!! TTAACATTTGAATTCAGTTA+TGG - chr5_4:40115804-40115823 None:intergenic 20.0%
!! CATTAGATATGATTAATGAT+AGG + chr5_4:40115963-40115982 Msa0850540:intron 20.0%
!! AAATTATTAGTATATGGACA+CGG - chr5_4:40116221-40116240 None:intergenic 20.0%
!!! CAGTGTAAATATTTTTTACA+CGG + chr5_4:40116404-40116423 Msa0850540:intron 20.0%
!! ATATTATACTACAACATACT+TGG + chr5_4:40117291-40117310 Msa0850540:three_prime_UTR 20.0%
!!! AGTTTTGACTAAATTCATTT+AGG + chr5_4:40117322-40117341 Msa0850540:three_prime_UTR 20.0%
!!! AGGTAATTTGTTAAAGAAAA+AGG + chr5_4:40117342-40117361 Msa0850540:three_prime_UTR 20.0%
!!! TAATTTGTTAAAGAAAAAGG+AGG + chr5_4:40117345-40117364 Msa0850540:three_prime_UTR 20.0%
!!! AATTTGTTAAAGAAAAAGGA+GGG + chr5_4:40117346-40117365 Msa0850540:three_prime_UTR 20.0%
!!! TTATTTCAAGTGTGAATATT+AGG + chr5_4:40117437-40117456 Msa0850540:three_prime_UTR 20.0%
!!! AAATTTCTGATTTTGAGAAG+TGG + chr5_4:40113565-40113584 Msa0850540:five_prime_UTR 25.0%
!!! AATTTCTGATTTTGAGAAGT+GGG + chr5_4:40113566-40113585 Msa0850540:five_prime_UTR 25.0%
! TTTATCCATGACAAAAACAA+GGG - chr5_4:40113673-40113692 None:intergenic 25.0%
! ATTTATCCATGACAAAAACA+AGG - chr5_4:40113674-40113693 None:intergenic 25.0%
!! TTCTTGTTTGTTGAATTTGA+AGG + chr5_4:40113757-40113776 Msa0850540:intron 25.0%
!!! AGGCTATTCAATTTTTTGTA+TGG + chr5_4:40113777-40113796 Msa0850540:intron 25.0%
!!! TTGTATGGTGTGTTTTTTTA+AGG + chr5_4:40113792-40113811 Msa0850540:intron 25.0%
!!! GTTTTTTTAAGGATGATGAT+TGG + chr5_4:40113803-40113822 Msa0850540:intron 25.0%
!!! TGTTTTTTGTTATTGGTTTG+AGG + chr5_4:40113854-40113873 Msa0850540:intron 25.0%
!!! GTTTTTTGTTATTGGTTTGA+GGG + chr5_4:40113855-40113874 Msa0850540:intron 25.0%
!! CTTTGACATTTTTCATTTTG+GGG + chr5_4:40114092-40114111 Msa0850540:intron 25.0%
!!! TTTGTGTTGATTTTTTGTAG+AGG + chr5_4:40114154-40114173 Msa0850540:intron 25.0%
! AAAAACAAAGATTATGGACA+TGG - chr5_4:40114634-40114653 None:intergenic 25.0%
! GTTGAAATAACTTAGGATAT+TGG + chr5_4:40114660-40114679 Msa0850540:intron 25.0%
!! TCTATTTTCCAACATTCTAA+AGG + chr5_4:40115020-40115039 Msa0850540:CDS 25.0%
!! ACTCTGAAAGTTATGAAAAA+TGG + chr5_4:40115051-40115070 Msa0850540:intron 25.0%
!! CTCTGAAAGTTATGAAAAAT+GGG + chr5_4:40115052-40115071 Msa0850540:intron 25.0%
!!! TCTTTCAAATAGTTCTGATT+TGG + chr5_4:40115428-40115447 Msa0850540:CDS 25.0%
!!! CTTTCAAATAGTTCTGATTT+GGG + chr5_4:40115429-40115448 Msa0850540:CDS 25.0%
!!! TTTCAAATAGTTCTGATTTG+GGG + chr5_4:40115430-40115449 Msa0850540:CDS 25.0%
! GTTACTGCAATATTAATCAA+TGG + chr5_4:40115471-40115490 Msa0850540:CDS 25.0%
! TAATCAATGGTCAAATGTTA+TGG + chr5_4:40115484-40115503 Msa0850540:CDS 25.0%
!!! TCAGATTCTCATTTTTTGTT+TGG + chr5_4:40115695-40115714 Msa0850540:intron 25.0%
!! TCATGTTGTTTAATGTATCA+TGG + chr5_4:40115832-40115851 Msa0850540:intron 25.0%
!!! TAAGTTGTTTCTTTGTTACT+AGG - chr5_4:40116316-40116335 None:intergenic 25.0%
! CGTGTAAAAAATATTTACAC+TGG - chr5_4:40116406-40116425 None:intergenic 25.0%
! CTAAAAATTAAGTGCATGTT+TGG + chr5_4:40116801-40116820 Msa0850540:intron 25.0%
! TTCATTGTAGTTTCTTTCAA+AGG + chr5_4:40116966-40116985 Msa0850540:intron 25.0%
!! TAGTATAATATGTGTTGTTG+CGG - chr5_4:40117282-40117301 None:intergenic 25.0%
!!! GTTTACTGATTAGATTTTGT+TGG + chr5_4:40117389-40117408 Msa0850540:three_prime_UTR 25.0%
TATAAAATGTGTCACCTTAC+CGG - chr5_4:40113397-40113416 None:intergenic 30.0%
!!! TTTTTTGTAGAGGACTGAAT+TGG + chr5_4:40114164-40114183 Msa0850540:intron 30.0%
! TTTTTGTAGAGGACTGAATT+GGG + chr5_4:40114165-40114184 Msa0850540:intron 30.0%
ATTCCATGTATAGTGTATCT+AGG + chr5_4:40114239-40114258 Msa0850540:intron 30.0%
ATACCTAGATACACTATACA+TGG - chr5_4:40114245-40114264 None:intergenic 30.0%
TATTTGATTATCTTGGGAAG+AGG + chr5_4:40114271-40114290 Msa0850540:intron 30.0%
ATAACGTACAAGAAATACCA+AGG - chr5_4:40114324-40114343 None:intergenic 30.0%
! TTTAAGATCTATCACCATGT+AGG + chr5_4:40114568-40114587 Msa0850540:intron 30.0%
!!! GCAATGCATTTGTTTTGTTT+TGG + chr5_4:40114687-40114706 Msa0850540:intron 30.0%
AGAAAAATAAATCAGCTCGA+GGG - chr5_4:40114758-40114777 None:intergenic 30.0%
AAGAAAAATAAATCAGCTCG+AGG - chr5_4:40114759-40114778 None:intergenic 30.0%
! TTCATGATTTTTCCCTTTTC+CGG - chr5_4:40114836-40114855 None:intergenic 30.0%
CAAGTACAAGGAAAAGAATT+GGG + chr5_4:40114937-40114956 Msa0850540:CDS 30.0%
!! ATTTTCCAACATTCTAAAGG+AGG + chr5_4:40115023-40115042 Msa0850540:CDS 30.0%
!! AAATACCTCCTTTAGAATGT+TGG - chr5_4:40115031-40115050 None:intergenic 30.0%
! ACAATTTCATGGACTGAATT+GGG - chr5_4:40115084-40115103 None:intergenic 30.0%
!!! TGATTGCTGTTTTGAAAAGA+CGG + chr5_4:40115171-40115190 Msa0850540:intron 30.0%
TGATACAAATGGACAATTTC+AGG + chr5_4:40115231-40115250 Msa0850540:intron 30.0%
GATACAAATGGACAATTTCA+GGG + chr5_4:40115232-40115251 Msa0850540:intron 30.0%
! TTTTATCATAGGGTGCATTT+TGG + chr5_4:40115352-40115371 Msa0850540:intron 30.0%
! TTTATCATAGGGTGCATTTT+GGG + chr5_4:40115353-40115372 Msa0850540:intron 30.0%
!!! TTTTTAAGTACCTGGAATGT+TGG - chr5_4:40115631-40115650 None:intergenic 30.0%
!! AACTAAAGCGTTTTTCTACT+AGG - chr5_4:40116020-40116039 None:intergenic 30.0%
TAGTAGAAAAACGCTTTAGT+TGG + chr5_4:40116019-40116038 Msa0850540:intron 30.0%
TTTATGGTTGTGGTTTCAAT+TGG + chr5_4:40116073-40116092 Msa0850540:intron 30.0%
TTCTTCTCAACCTAATTTCA+TGG - chr5_4:40116110-40116129 None:intergenic 30.0%
!!! AATCGTTTTGTTTACATCGA+TGG + chr5_4:40116507-40116526 Msa0850540:intron 30.0%
TTTCAAGACCACAATAACAT+TGG + chr5_4:40116565-40116584 Msa0850540:intron 30.0%
ATAACATTGGCAATGATCTT+TGG + chr5_4:40116578-40116597 Msa0850540:intron 30.0%
AATGATCTTTGGTATTTGTC+AGG + chr5_4:40116589-40116608 Msa0850540:intron 30.0%
TACATCAGTACTATGTACAT+CGG - chr5_4:40116698-40116717 None:intergenic 30.0%
TTTCTAATTCTTGCAAGTGA+TGG + chr5_4:40116733-40116752 Msa0850540:CDS 30.0%
TAGTCAAGTAACAAGTGTTT+GGG - chr5_4:40116784-40116803 None:intergenic 30.0%
TTAGTCAAGTAACAAGTGTT+TGG - chr5_4:40116785-40116804 None:intergenic 30.0%
!! AATCATGTTGTCACTGATTT+CGG + chr5_4:40116844-40116863 Msa0850540:intron 30.0%
! CTAGTACATGTTTGGAATTA+CGG - chr5_4:40116930-40116949 None:intergenic 30.0%
AATATGCTCTAGTACATGTT+TGG - chr5_4:40116938-40116957 None:intergenic 30.0%
AACATGTACTAGAGCATATT+TGG + chr5_4:40116938-40116957 Msa0850540:intron 30.0%
TGTTTGCATATGTGAAAATC+AGG + chr5_4:40117021-40117040 Msa0850540:intron 30.0%
CATATGTGAAAATCAGGTAA+TGG + chr5_4:40117027-40117046 Msa0850540:intron 30.0%
AGATGATATATCTTGTGTTG+TGG + chr5_4:40117144-40117163 Msa0850540:CDS 30.0%
ATATATCTTGTGTTGTGGTT+AGG + chr5_4:40117149-40117168 Msa0850540:CDS 30.0%
TGATTGATACACTTCAAATC+AGG + chr5_4:40117181-40117200 Msa0850540:three_prime_UTR 30.0%
GGTATATACATATCTCTACA+TGG + chr5_4:40117240-40117259 Msa0850540:three_prime_UTR 30.0%
TATACTACAACATACTTGGT+TGG + chr5_4:40117295-40117314 Msa0850540:three_prime_UTR 30.0%
CTATATGTAGATTGATTGAG+AGG + chr5_4:40117481-40117500 Msa0850540:three_prime_UTR 30.0%
GGTTATATGCATCTAATTAC+TGG + chr5_4:40117502-40117521 Msa0850540:three_prime_UTR 30.0%
ATATGCATCTAATTACTGGT+TGG + chr5_4:40117506-40117525 Msa0850540:three_prime_UTR 30.0%
TAATTCTAATTGGACCGGTA+AGG + chr5_4:40113380-40113399 Msa0850540:five_prime_UTR 35.0%
! GCTTTGATCAAGGGTTTTTA+GGG + chr5_4:40113483-40113502 Msa0850540:five_prime_UTR 35.0%
TGTGATGAGAGAAACAGAAA+AGG - chr5_4:40113526-40113545 None:intergenic 35.0%
TCAGCATAGACACTTCAATT+TGG - chr5_4:40113606-40113625 None:intergenic 35.0%
AAGTGTCTATGCTGAGAATT+TGG + chr5_4:40113611-40113630 Msa0850540:five_prime_UTR 35.0%
AAAATTGTGAGGGACAGAAT+AGG - chr5_4:40114026-40114045 None:intergenic 35.0%
!!! TTTTTTGTCAGCGACTGAAT+TGG - chr5_4:40114057-40114076 None:intergenic 35.0%
! AGTCTGTGACATTTTCATAC+CGG - chr5_4:40114132-40114151 None:intergenic 35.0%
TGGGTCATTATAGATTTGTC+AGG + chr5_4:40114184-40114203 Msa0850540:intron 35.0%
GGGTCATTATAGATTTGTCA+GGG + chr5_4:40114185-40114204 Msa0850540:intron 35.0%
TCACCATGTAGGATAAAAGT+CGG + chr5_4:40114579-40114598 Msa0850540:intron 35.0%
GGAGCATACAACAATAAAGT+CGG - chr5_4:40114737-40114756 None:intergenic 35.0%
GGAAAAGGGAAAAATCATGA+AGG + chr5_4:40114835-40114854 Msa0850540:CDS 35.0%
CATGAAGGATCGATAAAGTA+TGG + chr5_4:40114850-40114869 Msa0850540:CDS 35.0%
! GCTAATTTTGTGCAAGTACA+AGG + chr5_4:40114925-40114944 Msa0850540:CDS 35.0%
GCAAGTACAAGGAAAAGAAT+TGG + chr5_4:40114936-40114955 Msa0850540:CDS 35.0%
!! GGTTTGTTTGCTATTTACGA+TGG + chr5_4:40114958-40114977 Msa0850540:CDS 35.0%
! CACAATTTCATGGACTGAAT+TGG - chr5_4:40115085-40115104 None:intergenic 35.0%
GATACTAGTGCACAATTTCA+TGG - chr5_4:40115095-40115114 None:intergenic 35.0%
TTTCAAAACAGCAATCAGCT+TGG - chr5_4:40115168-40115187 None:intergenic 35.0%
!!! GATTGCTGTTTTGAAAAGAC+GGG + chr5_4:40115172-40115191 Msa0850540:intron 35.0%
TTAGAATTTCGATAGAGCAG+AGG + chr5_4:40115202-40115221 Msa0850540:intron 35.0%
AGAGGATCTGATGATACAAA+TGG + chr5_4:40115220-40115239 Msa0850540:intron 35.0%
ATGTTATGGACAGCTAATGT+CGG + chr5_4:40115498-40115517 Msa0850540:CDS 35.0%
GATTGGAAACGAAGGAATAA+TGG - chr5_4:40115666-40115685 None:intergenic 35.0%
AACACCTATTGTGCAAAAGA+TGG + chr5_4:40115878-40115897 Msa0850540:intron 35.0%
! TCTACCATCTTTTGCACAAT+AGG - chr5_4:40115885-40115904 None:intergenic 35.0%
TGTAAGCAGTCCATGAAATT+AGG + chr5_4:40116097-40116116 Msa0850540:intron 35.0%
ACATTGTTTGTCACAAGCTT+AGG + chr5_4:40116347-40116366 Msa0850540:intron 35.0%
TGTAAGTGGTAGGATTCAAT+TGG + chr5_4:40116371-40116390 Msa0850540:intron 35.0%
GATCATTGCCAATGTTATTG+TGG - chr5_4:40116576-40116595 None:intergenic 35.0%
ACATCAGTACTATGTACATC+GGG - chr5_4:40116697-40116716 None:intergenic 35.0%
GTGAGTTTGACAAAATCACA+AGG - chr5_4:40116908-40116927 None:intergenic 35.0%
ATTAGGAATCTACATGAGAG+AGG + chr5_4:40117454-40117473 Msa0850540:three_prime_UTR 35.0%
TTAGGAATCTACATGAGAGA+GGG + chr5_4:40117455-40117474 Msa0850540:three_prime_UTR 35.0%
! CGCTTTGATCAAGGGTTTTT+AGG + chr5_4:40113482-40113501 Msa0850540:five_prime_UTR 40.0%
!!! GTCAACCCTTGTTTTTGTCA+TGG + chr5_4:40113665-40113684 Msa0850540:exon 40.0%
! TGTCCCTCACAATTTTCCAA+CGG + chr5_4:40114030-40114049 Msa0850540:intron 40.0%
! TCTGTGACATTTTCATACCG+GGG - chr5_4:40114130-40114149 None:intergenic 40.0%
! GTCTGTGACATTTTCATACC+GGG - chr5_4:40114131-40114150 None:intergenic 40.0%
AGATTTGTCAGGGACTGAAT+TGG + chr5_4:40114195-40114214 Msa0850540:intron 40.0%
GATTTGTCAGGGACTGAATT+GGG + chr5_4:40114196-40114215 Msa0850540:intron 40.0%
ATTATCTTGGGAAGAGGACT+TGG + chr5_4:40114277-40114296 Msa0850540:intron 40.0%
ACGTACAAGAAATACCAAGG+AGG - chr5_4:40114321-40114340 None:intergenic 40.0%
! AGTCGGCTGTACAAAGTTTT+AGG + chr5_4:40114596-40114615 Msa0850540:intron 40.0%
TATGGTTTCACCCTAGTGAA+AGG + chr5_4:40114868-40114887 Msa0850540:CDS 40.0%
ATGGTTTCACCCTAGTGAAA+GGG + chr5_4:40114869-40114888 Msa0850540:CDS 40.0%
CTTGCACAAAATTAGCGACA+TGG - chr5_4:40114921-40114940 None:intergenic 40.0%
!!! CTTTTGAGATAGATGCAGCA+GGG - chr5_4:40115383-40115402 None:intergenic 40.0%
AGCATATCTGAACACAGATC+AGG + chr5_4:40115401-40115420 Msa0850540:CDS 40.0%
! CGAGGCATCATTGAGAATAA+AGG + chr5_4:40115594-40115613 Msa0850540:CDS 40.0%
GGCATCATTGAGAATAAAGG+CGG + chr5_4:40115597-40115616 Msa0850540:CDS 40.0%
!!! CGAGAGCATTTTTAAGTACC+TGG - chr5_4:40115639-40115658 None:intergenic 40.0%
GAATCTGAAAGCAGACAGAT+TGG - chr5_4:40115683-40115702 None:intergenic 40.0%
! CACGTGGATTATGGAAAACA+TGG - chr5_4:40116178-40116197 None:intergenic 40.0%
TCCATAATCCACGTGATACT+TGG + chr5_4:40116183-40116202 Msa0850540:intron 40.0%
! ACAACTACAGCTCGTAGTTT+TGG - chr5_4:40116264-40116283 None:intergenic 40.0%
CCAGTTGTCCATTTACTCTA+GGG - chr5_4:40116621-40116640 None:intergenic 40.0%
CTGATCGCAAATGAGACTTT+AGG - chr5_4:40116672-40116691 None:intergenic 40.0%
CATCAGTACTATGTACATCG+GGG - chr5_4:40116696-40116715 None:intergenic 40.0%
!! TTCTTGCAAGTGATGGACTT+TGG + chr5_4:40116740-40116759 Msa0850540:CDS 40.0%
CAAGTAACAAGTGTTTGGGT+TGG - chr5_4:40116780-40116799 None:intergenic 40.0%
!! TGGATTAGTGACGAGTTCAA+CGG + chr5_4:40116821-40116840 Msa0850540:intron 40.0%
! TCAGGTAATGGCAAATCAAG+AGG + chr5_4:40117039-40117058 Msa0850540:intron 40.0%
TGCTTCAGCTGTTAATTGCT+TGG - chr5_4:40117107-40117126 None:intergenic 40.0%
CTTGTGTTGTGGTTAGGTTT+AGG + chr5_4:40117155-40117174 Msa0850540:CDS 40.0%
! TTTGCCTTTTCTTCTGTCGC+AGG + chr5_4:40113456-40113475 Msa0850540:five_prime_UTR 45.0%
GAAACCTGCGACAGAAGAAA+AGG - chr5_4:40113463-40113482 None:intergenic 45.0%
GCAGGTTTCGCTTTGATCAA+GGG + chr5_4:40113474-40113493 Msa0850540:five_prime_UTR 45.0%
GGACCGTTGGAAAATTGTGA+GGG - chr5_4:40114036-40114055 None:intergenic 45.0%
TGGACCGTTGGAAAATTGTG+AGG - chr5_4:40114037-40114056 None:intergenic 45.0%
! AAATACCAAGGAGGCACATC+AGG - chr5_4:40114312-40114331 None:intergenic 45.0%
!! CAGCCGACTTTTATCCTACA+TGG - chr5_4:40114585-40114604 None:intergenic 45.0%
GTAATCCTCCATCGGATGAT+TGG - chr5_4:40114899-40114918 None:intergenic 45.0%
! TGCTATTTACGATGGCCACT+TGG + chr5_4:40114966-40114985 Msa0850540:CDS 45.0%
GCTATTTACGATGGCCACTT+GGG + chr5_4:40114967-40114986 Msa0850540:CDS 45.0%
! AAGGTACTTGATCTCCCAAG+TGG - chr5_4:40114984-40115003 None:intergenic 45.0%
TCGCGATTTCGATAAAGCGT+AGG - chr5_4:40115125-40115144 None:intergenic 45.0%
!!! GCTTTTGAGATAGATGCAGC+AGG - chr5_4:40115384-40115403 None:intergenic 45.0%
!! AATAGTTCTGATTTGGGGCG+TGG + chr5_4:40115435-40115454 Msa0850540:CDS 45.0%
TAATGTCGGAGATTCACGAG+CGG + chr5_4:40115512-40115531 Msa0850540:CDS 45.0%
CGAGCGGTTCTTTCAAGAAA+AGG + chr5_4:40115528-40115547 Msa0850540:CDS 45.0%
ATGATGCCTCGTTCTGTGTT+AGG - chr5_4:40115585-40115604 None:intergenic 45.0%
!! GGTTTTGTCTCCAACATTCC+AGG + chr5_4:40115618-40115637 Msa0850540:CDS 45.0%
AGCAGACAGATTGGAAACGA+AGG - chr5_4:40115674-40115693 None:intergenic 45.0%
GTGCATCACGAACTGCTTTA+TGG + chr5_4:40116057-40116076 Msa0850540:intron 45.0%
CACGAACTGCTTTATGGTTG+TGG + chr5_4:40116063-40116082 Msa0850540:intron 45.0%
! GCCAAGTATCACGTGGATTA+TGG - chr5_4:40116187-40116206 None:intergenic 45.0%
TAATCCACGTGATACTTGGC+AGG + chr5_4:40116187-40116206 Msa0850540:intron 45.0%
AATCCACGTGATACTTGGCA+GGG + chr5_4:40116188-40116207 Msa0850540:intron 45.0%
!!! AGCTCGTAGTTTTGGACTTC+TGG - chr5_4:40116256-40116275 None:intergenic 45.0%
TCACAAGCTTAGGCTGTAAG+TGG + chr5_4:40116357-40116376 Msa0850540:intron 45.0%
AAGCTTAGGCTGTAAGTGGT+AGG + chr5_4:40116361-40116380 Msa0850540:intron 45.0%
CCCTAGAGTAAATGGACAAC+TGG + chr5_4:40116618-40116637 Msa0850540:CDS 45.0%
GCCAGTTGTCCATTTACTCT+AGG - chr5_4:40116622-40116641 None:intergenic 45.0%
!! TGCAAGTGATGGACTTTGGA+AGG + chr5_4:40116744-40116763 Msa0850540:CDS 45.0%
! AATTGCTTGGCTGCTTTCAG+TGG - chr5_4:40117094-40117113 None:intergenic 45.0%
CTACATGGCATGCCAATTCA+TGG + chr5_4:40117255-40117274 Msa0850540:three_prime_UTR 45.0%
TGTTGTTGCGGTCCATGAAT+TGG - chr5_4:40117270-40117289 None:intergenic 45.0%
!! GTATTTATTTATTTAAAAAA+CGG + chr5_4:40116988-40117007 Msa0850540:intron 5.0%
CGCAGGTTTCGCTTTGATCA+AGG + chr5_4:40113473-40113492 Msa0850540:five_prime_UTR 50.0%
TGGGGACTAGAATTAGTCCC+CGG + chr5_4:40114110-40114129 Msa0850540:intron 50.0%
! AAGGAGGCACATCAGGATGA+AGG - chr5_4:40114305-40114324 None:intergenic 50.0%
TTCATCCTGATGTGCCTCCT+TGG + chr5_4:40114304-40114323 Msa0850540:intron 50.0%
! TCATCATGCAGCACCGGAAA+AGG + chr5_4:40114820-40114839 Msa0850540:CDS 50.0%
! CATCATGCAGCACCGGAAAA+GGG + chr5_4:40114821-40114840 Msa0850540:CDS 50.0%
!! ATTGGCTCGCCCTTTCACTA+GGG - chr5_4:40114881-40114900 None:intergenic 50.0%
GCGACATGGTAATCCTCCAT+CGG - chr5_4:40114907-40114926 None:intergenic 50.0%
GCGAAATAGCCGCTAACAGA+GGG + chr5_4:40115141-40115160 Msa0850540:intron 50.0%
CATGAGCCTAACACAGAACG+AGG + chr5_4:40115576-40115595 Msa0850540:CDS 50.0%
GGCGATGTCCCTAGAGTAAA+TGG + chr5_4:40116610-40116629 Msa0850540:intron 50.0%
CAGCGACTGAATTGGACCGT+TGG - chr5_4:40114049-40114068 None:intergenic 55.0%
ACGCGTTCATCATGCAGCAC+CGG + chr5_4:40114814-40114833 Msa0850540:CDS 55.0%
!! GATTGGCTCGCCCTTTCACT+AGG - chr5_4:40114882-40114901 None:intergenic 55.0%
CGCGAAATAGCCGCTAACAG+AGG + chr5_4:40115140-40115159 Msa0850540:intron 55.0%
CAGCTTGGTCCCTCTGTTAG+CGG - chr5_4:40115153-40115172 None:intergenic 55.0%
!! AGTTCTGATTTGGGGCGTGG+TGG + chr5_4:40115438-40115457 Msa0850540:CDS 55.0%
GTTCCCTGCCAAGTATCACG+TGG - chr5_4:40116194-40116213 None:intergenic 55.0%
CTGGCTGTTGCTCGTGCATT+TGG + chr5_4:40116637-40116656 Msa0850540:CDS 55.0%
! GGTGCTGCATGATGAACGCG+TGG - chr5_4:40114815-40114834 None:intergenic 60.0%
AGGGCGAGCCAATCATCCGA+TGG + chr5_4:40114888-40114907 Msa0850540:CDS 60.0%
GCGAGCCAATCATCCGATGG+AGG + chr5_4:40114891-40114910 Msa0850540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40113363 40117553 40113363 ID=Msa0850540;Name=Msa0850540
chr5_4 mRNA 40113363 40117553 40113363 ID=Msa0850540-mRNA-1;Parent=Msa0850540;Name=Msa0850540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=321|1|1|1|1|1|5|373|282
chr5_4 exon 40113363 40113722 40113363 ID=Msa0850540-mRNA-1:exon:12634;Parent=Msa0850540-mRNA-1
chr5_4 exon 40114805 40115044 40114805 ID=Msa0850540-mRNA-1:exon:12635;Parent=Msa0850540-mRNA-1
chr5_4 exon 40115363 40115639 40115363 ID=Msa0850540-mRNA-1:exon:12636;Parent=Msa0850540-mRNA-1
chr5_4 exon 40116611 40116765 40116611 ID=Msa0850540-mRNA-1:exon:12637;Parent=Msa0850540-mRNA-1
chr5_4 exon 40117043 40117553 40117043 ID=Msa0850540-mRNA-1:exon:12638;Parent=Msa0850540-mRNA-1
chr5_4 five_prime_UTR 40113363 40113683 40113363 ID=Msa0850540-mRNA-1:five_prime_utr;Parent=Msa0850540-mRNA-1
chr5_4 CDS 40113684 40113722 40113684 ID=Msa0850540-mRNA-1:cds;Parent=Msa0850540-mRNA-1
chr5_4 CDS 40114805 40115044 40114805 ID=Msa0850540-mRNA-1:cds;Parent=Msa0850540-mRNA-1
chr5_4 CDS 40115363 40115639 40115363 ID=Msa0850540-mRNA-1:cds;Parent=Msa0850540-mRNA-1
chr5_4 CDS 40116611 40116765 40116611 ID=Msa0850540-mRNA-1:cds;Parent=Msa0850540-mRNA-1
chr5_4 CDS 40117043 40117180 40117043 ID=Msa0850540-mRNA-1:cds;Parent=Msa0850540-mRNA-1
chr5_4 three_prime_UTR 40117181 40117553 40117181 ID=Msa0850540-mRNA-1:three_prime_utr;Parent=Msa0850540-mRNA-1
Gene Sequence

>Msa0850540

ATGGATAAATTTTGTTGTTTAAAGTCTTCTTTTTCTAAGCTTGTATCCACGCGTTCATCATGCAGCACCGGAAAAGGGAAAAATCATGAAGGATCGATAAAGTATGGTTTCACCCTAGTGAAAGGGCGAGCCAATCATCCGATGGAGGATTACCATGTCGCTAATTTTGTGCAAGTACAAGGAAAAGAATTGGGTTTGTTTGCTATTTACGATGGCCACTTGGGAGATCAAGTACCTTCATATTTACAGAAAAATCTATTTTCCAACATTCTAAAGGAGGGTGCATTTTGGGATGACCCTGCTGCATCTATCTCAAAAGCATATCTGAACACAGATCAGGCAATTCTTTCAAATAGTTCTGATTTGGGGCGTGGTGGATCAACAGCTGTTACTGCAATATTAATCAATGGTCAAATGTTATGGACAGCTAATGTCGGAGATTCACGAGCGGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACTGATCATGAGCCTAACACAGAACGAGGCATCATTGAGAATAAAGGCGGTTTTGTCTCCAACATTCCAGGCGATGTCCCTAGAGTAAATGGACAACTGGCTGTTGCTCGTGCATTTGGAGACAAGAGCCTAAAGTCTCATTTGCGATCAGACCCCGATGTACATAGTACTGATGTAGATGTTGATATTGACTTTCTAATTCTTGCAAGTGATGGACTTTGGAAGGTAATGGCAAATCAAGAGGCAGTTGATATTGCTAGAAAAGTGAAAGATCCACTGAAAGCAGCCAAGCAATTAACAGCTGAAGCATTAAAAAGAGAAAGTAAAGATGATATATCTTGTGTTGTGGTTAGGTTTAGGTGA
Protein sequence

>Msa0850540

MDKFCCLKSSFSKLVSTRSSCSTGKGKNHEGSIKYGFTLVKGRANHPMEDYHVANFVQVQGKELGLFAIYDGHLGDQVPSYLQKNLFSNILKEGAFWDDPAASISKAYLNTDQAILSNSSDLGRGGSTAVTAILINGQMLWTANVGDSRAVLSRKGQAVQLTTDHEPNTERGIIENKGGFVSNIPGDVPRVNGQLAVARAFGDKSLKSHLRSDPDVHSTDVDVDIDFLILASDGLWKVMANQEAVDIARKVKDPLKAAKQLTAEALKRESKDDISCVVVRFR*