Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851070 | XP_003615240.1 | 91.775 | 231 | 15 | 2 | 1 | 231 | 1 | 227 | 1.03e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851070 | sp|Q9VDL1|LOVG_DROME | 29.596 | 223 | 138 | 8 | 6 | 216 | 24 | 239 | 1.75e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851070 | G7KBG3 | 91.775 | 231 | 15 | 2 | 1 | 231 | 1 | 227 | 4.93e-153 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732350 | Msa0851070 | 0.833818 | 4.285632e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851070 | MtrunA17_Chr5g0427111 | 91.775 | 231 | 15 | 2 | 1 | 231 | 1 | 227 | 9.50e-157 | 433 |
| Msa0851070 | MtrunA17_Chr5g0412511 | 59.740 | 231 | 83 | 3 | 1 | 226 | 1 | 226 | 4.67e-99 | 287 |
| Msa0851070 | MtrunA17_Chr7g0254691 | 50.732 | 205 | 101 | 0 | 11 | 215 | 7 | 211 | 2.24e-74 | 226 |
| Msa0851070 | MtrunA17_Chr6g0464361 | 81.579 | 76 | 11 | 1 | 1 | 76 | 1 | 73 | 1.69e-40 | 133 |
| Msa0851070 | MtrunA17_Chr1g0192901 | 25.911 | 247 | 109 | 8 | 9 | 198 | 412 | 641 | 2.81e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851070 | AT4G24380.1 | 65.333 | 225 | 78 | 0 | 7 | 231 | 6 | 230 | 7.58e-115 | 328 |
| Msa0851070 | AT4G24380.3 | 59.592 | 245 | 72 | 1 | 7 | 224 | 6 | 250 | 5.45e-109 | 314 |
| Msa0851070 | AT4G24380.2 | 71.429 | 161 | 46 | 0 | 7 | 167 | 6 | 166 | 1.42e-88 | 259 |
| Msa0851070 | AT5G65400.1 | 58.222 | 225 | 88 | 2 | 11 | 230 | 28 | 251 | 2.10e-88 | 261 |
| Msa0851070 | AT5G65400.2 | 58.222 | 225 | 88 | 2 | 11 | 230 | 46 | 269 | 4.28e-88 | 261 |
| Msa0851070 | AT4G24380.5 | 76.068 | 117 | 28 | 0 | 7 | 123 | 6 | 122 | 9.35e-68 | 204 |
| Msa0851070 | AT4G24380.6 | 62.416 | 149 | 56 | 0 | 76 | 224 | 53 | 201 | 1.94e-66 | 204 |
| Msa0851070 | AT4G24380.4 | 61.806 | 144 | 28 | 1 | 7 | 123 | 6 | 149 | 2.61e-62 | 192 |
| Msa0851070 | AT1G09280.1 | 28.700 | 223 | 120 | 8 | 8 | 198 | 349 | 564 | 2.64e-17 | 80.9 |
Find 63 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATAAAATAGGAATTA+TGG | 0.175184 | 5_4:-41055168 | None:intergenic |
| GAATCCAATTTATAGGATTC+AGG | 0.217310 | 5_4:-41055069 | None:intergenic |
| ATGAATTGAATCCAATTTAT+AGG | 0.234650 | 5_4:-41055076 | None:intergenic |
| AAACCCTGAATCCTATAAAT+TGG | 0.246445 | 5_4:+41055065 | Msa0851070:five_prime_UTR |
| TCAATTAAATTAAATAAAAT+AGG | 0.247280 | 5_4:-41055176 | None:intergenic |
| CTTGGTACAGTGTGTCCTTT+TGG | 0.255612 | 5_4:-41057793 | None:intergenic |
| TTGCCCCTCCTATTATTATA+AGG | 0.258599 | 5_4:-41057150 | None:intergenic |
| AAAGCATATTCTTCACAAAT+TGG | 0.265190 | 5_4:+41057199 | Msa0851070:CDS |
| GTGAAATTCCTTATAATAAT+AGG | 0.268426 | 5_4:+41057142 | Msa0851070:CDS |
| GGACCGTTTGATGGTCTTCT+TGG | 0.283927 | 5_4:+41055588 | Msa0851070:CDS |
| CCAAGATTTATGTGTCTTCA+TGG | 0.291824 | 5_4:+41055244 | Msa0851070:CDS |
| TAATAGGAGGGGCAAAGTTC+AGG | 0.313761 | 5_4:+41057158 | Msa0851070:CDS |
| GATGAGCTAATACTTCTCTT+AGG | 0.332661 | 5_4:+41058054 | Msa0851070:exon |
| GCCTGAATTCATGTTAGCTT+TGG | 0.341697 | 5_4:-41058203 | None:intergenic |
| CTCCTTATTATGAGTGGTTC+GGG | 0.359841 | 5_4:+41055404 | Msa0851070:CDS |
| AGGGGCACTGCCAGGTCTTC+AGG | 0.365615 | 5_4:+41055784 | Msa0851070:CDS |
| CCTCCTTATTATGAGTGGTT+CGG | 0.369390 | 5_4:+41055403 | Msa0851070:CDS |
| AGTGGAAGAAAGATGGAATA+AGG | 0.378734 | 5_4:-41055111 | None:intergenic |
| TACCCGAACCACTCATAATA+AGG | 0.388373 | 5_4:-41055406 | None:intergenic |
| CCATGAAGACACATAAATCT+TGG | 0.393495 | 5_4:-41055244 | None:intergenic |
| TCCAAAGCTAACATGAATTC+AGG | 0.403280 | 5_4:+41058202 | Msa0851070:three_prime_UTR |
| ATTATAAGGAATTTCACTTT+GGG | 0.410361 | 5_4:-41057136 | None:intergenic |
| ATCAAACATGGACCGTTTGA+TGG | 0.413598 | 5_4:+41055579 | Msa0851070:CDS |
| TATTATAAGGAATTTCACTT+TGG | 0.427378 | 5_4:-41057137 | None:intergenic |
| AATCCAATTTATAGGATTCA+GGG | 0.431564 | 5_4:-41055068 | None:intergenic |
| ACAGAAGATTTGCCCTTACA+AGG | 0.446247 | 5_4:-41055364 | None:intergenic |
| AAGGGCAAATCTTCTGTTGA+AGG | 0.465269 | 5_4:+41055370 | Msa0851070:CDS |
| GGACACACTGTACCAAGATT+AGG | 0.480578 | 5_4:+41057799 | Msa0851070:CDS |
| AATAGGAGGGGCAAAGTTCA+GGG | 0.486880 | 5_4:+41057159 | Msa0851070:CDS |
| CAAGATTTATGTGTCTTCAT+GGG | 0.487719 | 5_4:+41055245 | Msa0851070:CDS |
| TGGTCTTCTTGGATTCTCAC+AGG | 0.488533 | 5_4:+41055599 | Msa0851070:CDS |
| ATTAGTAGCACACCTAATCT+TGG | 0.492125 | 5_4:-41057811 | None:intergenic |
| GATTTGCCCTTACAAGGAAA+AGG | 0.494545 | 5_4:-41055358 | None:intergenic |
| ATATTATCAGGGGCACTGCC+AGG | 0.501875 | 5_4:+41055776 | Msa0851070:CDS |
| GAAAGATGGAATAAGGTTTG+TGG | 0.508983 | 5_4:-41055104 | None:intergenic |
| ATTTAATTGAAGAAGAGAGA+TGG | 0.516375 | 5_4:+41055189 | Msa0851070:exon |
| TCTTTCTATGAAACTCATCA+TGG | 0.528093 | 5_4:-41057987 | None:intergenic |
| CATACCTTCTCCTGAAGACC+TGG | 0.535143 | 5_4:-41055794 | None:intergenic |
| TCGACCCTCCTTATTATGAG+TGG | 0.538420 | 5_4:+41055398 | Msa0851070:CDS |
| GTGGTAATTCATCACCCAAA+AGG | 0.539105 | 5_4:+41057778 | Msa0851070:CDS |
| TATTATATCTGAAAATAAAG+AGG | 0.545461 | 5_4:+41058021 | Msa0851070:CDS |
| ATTGTATTTGTTGTGATGAG+TGG | 0.548332 | 5_4:-41055129 | None:intergenic |
| TTTGGGTGATGAATTACCAC+AGG | 0.551356 | 5_4:-41057775 | None:intergenic |
| AAAGTTCAGGGCACCTTCAG+TGG | 0.556647 | 5_4:+41057171 | Msa0851070:CDS |
| CTTCATGGGTTTCGAACAAG+TGG | 0.558594 | 5_4:+41055259 | Msa0851070:CDS |
| TGTGATGAGTGGAAGAAAGA+TGG | 0.564457 | 5_4:-41055118 | None:intergenic |
| AGCTAACATGAATTCAGGCT+CGG | 0.569876 | 5_4:+41058207 | Msa0851070:three_prime_UTR |
| ACTGCCAGGTCTTCAGGAGA+AGG | 0.577964 | 5_4:+41055790 | Msa0851070:CDS |
| ATTCCTTATAATAATAGGAG+GGG | 0.578464 | 5_4:+41057147 | Msa0851070:CDS |
| TATGCTTTCTCTACCACTGA+AGG | 0.584580 | 5_4:-41057184 | None:intergenic |
| AAATTCCTTATAATAATAGG+AGG | 0.592167 | 5_4:+41057145 | Msa0851070:CDS |
| AATCCAAGAAGACCATCAAA+CGG | 0.617555 | 5_4:-41055591 | None:intergenic |
| AATTCCTTATAATAATAGGA+GGG | 0.618651 | 5_4:+41057146 | Msa0851070:CDS |
| ATAGGAATATATAAGATGTG+TGG | 0.621438 | 5_4:-41058150 | None:intergenic |
| CCGAACCACTCATAATAAGG+AGG | 0.630666 | 5_4:-41055403 | None:intergenic |
| TACCTAGAAAATGAAGAGAG+TGG | 0.639422 | 5_4:-41057225 | None:intergenic |
| CGAACCACTCATAATAAGGA+GGG | 0.642917 | 5_4:-41055402 | None:intergenic |
| AGATAATTGTGTTGAACCTG+TGG | 0.656624 | 5_4:+41057759 | Msa0851070:CDS |
| GAGGATTACATGATCAAACA+TGG | 0.657463 | 5_4:+41055567 | Msa0851070:CDS |
| AGATGGAATAAGGTTTGTGG+AGG | 0.657667 | 5_4:-41055101 | None:intergenic |
| TGAGTGTCTGCAATATATTG+AGG | 0.665567 | 5_4:+41055548 | Msa0851070:CDS |
| AATAAAATAGGAATTATGGA+CGG | 0.670078 | 5_4:-41055164 | None:intergenic |
| TGAGTGGTTCGGGTACAACG+AGG | 0.765548 | 5_4:+41055414 | Msa0851070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATAAAATAGGAATTA+TGG | - | chr5_4:41055171-41055190 | None:intergenic | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr5_4:41056155-41056174 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr5_4:41056156-41056175 | None:intergenic | 10.0% |
| !! | AAAATTATTGAATTTATCTT+CGG | - | chr5_4:41056692-41056711 | None:intergenic | 10.0% |
| !! | ATCAAATATTGAAAATTTGA+AGG | + | chr5_4:41055661-41055680 | Msa0851070:intron | 15.0% |
| !!! | TGTTTGATTTGATTTATAAT+TGG | + | chr5_4:41055698-41055717 | Msa0851070:intron | 15.0% |
| !!! | ATCTTTCTTTTTGAAAAATA+AGG | - | chr5_4:41056077-41056096 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr5_4:41056441-41056460 | Msa0851070:intron | 15.0% |
| !! | ATTATAAATTCACAAACAAA+TGG | - | chr5_4:41057012-41057031 | None:intergenic | 15.0% |
| !! | TTTCCCTAAAAAAAAAAAAA+AGG | + | chr5_4:41057067-41057086 | Msa0851070:intron | 15.0% |
| !!! | TGACCTTTTTTTTTTTTTTA+GGG | - | chr5_4:41057073-41057092 | None:intergenic | 15.0% |
| !!! | ATGACCTTTTTTTTTTTTTT+AGG | - | chr5_4:41057074-41057093 | None:intergenic | 15.0% |
| !!! | TTTATGTTACTTATATTTGT+AGG | + | chr5_4:41057093-41057112 | Msa0851070:intron | 15.0% |
| !!! | TTATGTTACTTATATTTGTA+GGG | + | chr5_4:41057094-41057113 | Msa0851070:intron | 15.0% |
| !! | TAAATACATTGAAAATTGAA+AGG | - | chr5_4:41057262-41057281 | None:intergenic | 15.0% |
| !! | TATTATATCTGAAAATAAAG+AGG | + | chr5_4:41058021-41058040 | Msa0851070:CDS | 15.0% |
| !! | AAAAATAATATTATTGTCTG+TGG | + | chr5_4:41058179-41058198 | Msa0851070:three_prime_UTR | 15.0% |
| !!! | ATGTAAAATGCATTTTATAT+AGG | - | chr5_4:41058301-41058320 | None:intergenic | 15.0% |
| !! | ATGAATTGAATCCAATTTAT+AGG | - | chr5_4:41055079-41055098 | None:intergenic | 20.0% |
| !! | AATAAAATAGGAATTATGGA+CGG | - | chr5_4:41055167-41055186 | None:intergenic | 20.0% |
| !! | TGTTTGAATTTGACAAAATA+GGG | + | chr5_4:41055749-41055768 | Msa0851070:intron | 20.0% |
| !!! | ATTTTTATTTTATCCCTAGA+CGG | + | chr5_4:41055903-41055922 | Msa0851070:intron | 20.0% |
| !!! | AATAAGGTATCATTAAGTTA+TGG | - | chr5_4:41056061-41056080 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | - | chr5_4:41056468-41056487 | None:intergenic | 20.0% |
| !!! | AGTTTTAACTGTATTGTTTA+AGG | + | chr5_4:41056486-41056505 | Msa0851070:intron | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_4:41056654-41056673 | None:intergenic | 20.0% |
| !!! | TCAATAATTTTTTTTGAGCT+TGG | + | chr5_4:41056701-41056720 | Msa0851070:intron | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_4:41056654-41056673 | None:intergenic | 20.0% |
| !! | GTGTAGAAATTAAACTAAAA+TGG | + | chr5_4:41056968-41056987 | Msa0851070:intron | 20.0% |
| !! | TATTTCGACTATCTAAAAAA+TGG | + | chr5_4:41057040-41057059 | Msa0851070:intron | 20.0% |
| !! | ATTATAAGGAATTTCACTTT+GGG | - | chr5_4:41057139-41057158 | None:intergenic | 20.0% |
| !! | TATTATAAGGAATTTCACTT+TGG | - | chr5_4:41057140-41057159 | None:intergenic | 20.0% |
| !! | GTGAAATTCCTTATAATAAT+AGG | + | chr5_4:41057142-41057161 | Msa0851070:CDS | 20.0% |
| !! | AAATTCCTTATAATAATAGG+AGG | + | chr5_4:41057145-41057164 | Msa0851070:CDS | 20.0% |
| !! | AATTCCTTATAATAATAGGA+GGG | + | chr5_4:41057146-41057165 | Msa0851070:CDS | 20.0% |
| !! | TTCTACATTAACTTTAGATA+TGG | + | chr5_4:41057490-41057509 | Msa0851070:intron | 20.0% |
| !!! | ATAAGCACAAATTTCTTTTA+AGG | - | chr5_4:41057694-41057713 | None:intergenic | 20.0% |
| !!! | TTGATTAAACAACCATTTTT+GGG | - | chr5_4:41057926-41057945 | None:intergenic | 20.0% |
| !!! | ATTGATTAAACAACCATTTT+TGG | - | chr5_4:41057927-41057946 | None:intergenic | 20.0% |
| !! | TCTTATCATCTGAAAAATAA+AGG | - | chr5_4:41057958-41057977 | None:intergenic | 20.0% |
| !!! | TTCCAAATATATTTTTGAAG+TGG | + | chr5_4:41058125-41058144 | Msa0851070:three_prime_UTR | 20.0% |
| !! | ATCCACTTCAAAAATATATT+TGG | - | chr5_4:41058130-41058149 | None:intergenic | 20.0% |
| ! | AATCCAATTTATAGGATTCA+GGG | - | chr5_4:41055071-41055090 | None:intergenic | 25.0% |
| ! | ATTTAATTGAAGAAGAGAGA+TGG | + | chr5_4:41055189-41055208 | Msa0851070:exon | 25.0% |
| !!! | CATAAATCTTGGTTTTCTTA+CGG | - | chr5_4:41055236-41055255 | None:intergenic | 25.0% |
| ! | TGAAAAAACAGATACATAAG+TGG | + | chr5_4:41055290-41055309 | Msa0851070:CDS | 25.0% |
| ! | TTGAATTAAGAAGCTAATGA+AGG | - | chr5_4:41055627-41055646 | None:intergenic | 25.0% |
| ! | GTGTTTGAATTTGACAAAAT+AGG | + | chr5_4:41055748-41055767 | Msa0851070:intron | 25.0% |
| ! | GTTTGAATTTGACAAAATAG+GGG | + | chr5_4:41055750-41055769 | Msa0851070:intron | 25.0% |
| ! | TTTGAATTTGACAAAATAGG+GGG | + | chr5_4:41055751-41055770 | Msa0851070:intron | 25.0% |
| ! | TAAATTTGAACATGAGACAA+CGG | + | chr5_4:41056004-41056023 | Msa0851070:intron | 25.0% |
| ! | CTAATATATGGAGTATGTTT+CGG | + | chr5_4:41056106-41056125 | Msa0851070:intron | 25.0% |
| ! | TAATATATGGAGTATGTTTC+GGG | + | chr5_4:41056107-41056126 | Msa0851070:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | - | chr5_4:41056463-41056482 | None:intergenic | 25.0% |
| ! | ATTGCGTAAATAATGACATA+AGG | + | chr5_4:41056588-41056607 | Msa0851070:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_4:41056649-41056668 | None:intergenic | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_4:41056649-41056668 | None:intergenic | 25.0% |
| !!! | AATTTTTTGTGACCTAAGTA+AGG | + | chr5_4:41056769-41056788 | Msa0851070:intron | 25.0% |
| ! | ACATCTTAATATCCTTACTT+AGG | - | chr5_4:41056784-41056803 | None:intergenic | 25.0% |
| ! | AAGTAAGGATATTAAGATGT+TGG | + | chr5_4:41056784-41056803 | Msa0851070:intron | 25.0% |
| ! | ATTCCTTATAATAATAGGAG+GGG | + | chr5_4:41057147-41057166 | Msa0851070:CDS | 25.0% |
| ! | AAAGCATATTCTTCACAAAT+TGG | + | chr5_4:41057199-41057218 | Msa0851070:CDS | 25.0% |
| ! | TAAAAAAACTATACCTACCT+GGG | - | chr5_4:41057522-41057541 | None:intergenic | 25.0% |
| ! | ATTGTGACATAGATGAAAAA+GGG | - | chr5_4:41057618-41057637 | None:intergenic | 25.0% |
| ! | TATTGTGACATAGATGAAAA+AGG | - | chr5_4:41057619-41057638 | None:intergenic | 25.0% |
| !! | GTTTATATGTTTCTAATGAG+TGG | + | chr5_4:41057850-41057869 | Msa0851070:intron | 25.0% |
| ! | TTTATCATTTCTCCCAAAAA+TGG | + | chr5_4:41057911-41057930 | Msa0851070:intron | 25.0% |
| ! | ATAGGAATATATAAGATGTG+TGG | - | chr5_4:41058153-41058172 | None:intergenic | 25.0% |
| AAACCCTGAATCCTATAAAT+TGG | + | chr5_4:41055065-41055084 | Msa0851070:five_prime_UTR | 30.0% | |
| GAATCCAATTTATAGGATTC+AGG | - | chr5_4:41055072-41055091 | None:intergenic | 30.0% | |
| !! | ATTGTATTTGTTGTGATGAG+TGG | - | chr5_4:41055132-41055151 | None:intergenic | 30.0% |
| CAAGATTTATGTGTCTTCAT+GGG | + | chr5_4:41055245-41055264 | Msa0851070:CDS | 30.0% | |
| GAAAATTTGAAGGATCATTG+TGG | + | chr5_4:41055671-41055690 | Msa0851070:intron | 30.0% | |
| CTATAAAGATCTGAATCTGA+TGG | + | chr5_4:41055723-41055742 | Msa0851070:intron | 30.0% | |
| ! | GAGAAGGTATGTAAAAAACT+GGG | + | chr5_4:41055806-41055825 | Msa0851070:intron | 30.0% |
| GTTATTTATCATTCCGTCTA+GGG | - | chr5_4:41055919-41055938 | None:intergenic | 30.0% | |
| ! | TGTTATTTATCATTCCGTCT+AGG | - | chr5_4:41055920-41055939 | None:intergenic | 30.0% |
| GATTGTGTCATGCTAATATA+TGG | + | chr5_4:41056094-41056113 | Msa0851070:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr5_4:41056128-41056147 | Msa0851070:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr5_4:41056137-41056156 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr5_4:41056230-41056249 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | + | chr5_4:41056348-41056367 | Msa0851070:intron | 30.0% |
| ACTGTACATACCAAACAAAA+AGG | - | chr5_4:41056361-41056380 | None:intergenic | 30.0% | |
| AAGGATATTAAGATGTTGGA+AGG | + | chr5_4:41056788-41056807 | Msa0851070:intron | 30.0% | |
| GACGTTTATATGTACATAAG+AGG | + | chr5_4:41056911-41056930 | Msa0851070:intron | 30.0% | |
| ATAAGATTGCTGAAATTGCT+AGG | + | chr5_4:41056934-41056953 | Msa0851070:intron | 30.0% | |
| TAAGATTGCTGAAATTGCTA+GGG | + | chr5_4:41056935-41056954 | Msa0851070:intron | 30.0% | |
| TTACTTATATTTGTAGGGTG+TGG | + | chr5_4:41057099-41057118 | Msa0851070:intron | 30.0% | |
| ACATTGAAAATTGAAAGGAG+AGG | - | chr5_4:41057257-41057276 | None:intergenic | 30.0% | |
| !!! | TTTAGATATGGTTTTTTCCC+AGG | + | chr5_4:41057502-41057521 | Msa0851070:intron | 30.0% |
| GTAAAAAAACTATACCTACC+TGG | - | chr5_4:41057523-41057542 | None:intergenic | 30.0% | |
| AAGAAATTTGTGCTTATTGC+AGG | + | chr5_4:41057697-41057716 | Msa0851070:intron | 30.0% | |
| !!! | CATGATTTTTTGAAGGAGTA+TGG | + | chr5_4:41057724-41057743 | Msa0851070:CDS | 30.0% |
| TCTTTCTATGAAACTCATCA+TGG | - | chr5_4:41057990-41058009 | None:intergenic | 30.0% | |
| GAAAGATGGAATAAGGTTTG+TGG | - | chr5_4:41055107-41055126 | None:intergenic | 35.0% | |
| AGTGGAAGAAAGATGGAATA+AGG | - | chr5_4:41055114-41055133 | None:intergenic | 35.0% | |
| CCATGAAGACACATAAATCT+TGG | - | chr5_4:41055247-41055266 | None:intergenic | 35.0% | |
| CCAAGATTTATGTGTCTTCA+TGG | + | chr5_4:41055244-41055263 | Msa0851070:CDS | 35.0% | |
| !! | AGTTTGTCTAGAACGTTTTG+TGG | - | chr5_4:41055316-41055335 | None:intergenic | 35.0% |
| TGAGTGTCTGCAATATATTG+AGG | + | chr5_4:41055548-41055567 | Msa0851070:CDS | 35.0% | |
| GAGGATTACATGATCAAACA+TGG | + | chr5_4:41055567-41055586 | Msa0851070:CDS | 35.0% | |
| AATCCAAGAAGACCATCAAA+CGG | - | chr5_4:41055594-41055613 | None:intergenic | 35.0% | |
| ! | GGAGAAGGTATGTAAAAAAC+TGG | + | chr5_4:41055805-41055824 | Msa0851070:intron | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | - | chr5_4:41056138-41056157 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | - | chr5_4:41056274-41056293 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCACA+AGG | + | chr5_4:41056296-41056315 | Msa0851070:intron | 35.0% | |
| !!! | GTTTTTTTATGGACTGGCAT+CGG | - | chr5_4:41056643-41056662 | None:intergenic | 35.0% |
| TTCACAAACAAATGGAAGCA+GGG | - | chr5_4:41057004-41057023 | None:intergenic | 35.0% | |
| ATTCACAAACAAATGGAAGC+AGG | - | chr5_4:41057005-41057024 | None:intergenic | 35.0% | |
| TTGCCCCTCCTATTATTATA+AGG | - | chr5_4:41057153-41057172 | None:intergenic | 35.0% | |
| TACCTAGAAAATGAAGAGAG+TGG | - | chr5_4:41057228-41057247 | None:intergenic | 35.0% | |
| AACACACGACTTTGATAGAT+GGG | - | chr5_4:41057386-41057405 | None:intergenic | 35.0% | |
| CAAAGTCGTGTGTTCAAATT+CGG | + | chr5_4:41057392-41057411 | Msa0851070:intron | 35.0% | |
| ACCCAACTCATGTTTATGTT+CGG | - | chr5_4:41057552-41057571 | None:intergenic | 35.0% | |
| !!! | AGGAGAGCATGATTTTTTGA+AGG | + | chr5_4:41057717-41057736 | Msa0851070:intron | 35.0% |
| AGATAATTGTGTTGAACCTG+TGG | + | chr5_4:41057759-41057778 | Msa0851070:CDS | 35.0% | |
| ATTAGTAGCACACCTAATCT+TGG | - | chr5_4:41057814-41057833 | None:intergenic | 35.0% | |
| GATGAGCTAATACTTCTCTT+AGG | + | chr5_4:41058054-41058073 | Msa0851070:exon | 35.0% | |
| TCCAAAGCTAACATGAATTC+AGG | + | chr5_4:41058202-41058221 | Msa0851070:three_prime_UTR | 35.0% | |
| AGATGGAATAAGGTTTGTGG+AGG | - | chr5_4:41055104-41055123 | None:intergenic | 40.0% | |
| TGTGATGAGTGGAAGAAAGA+TGG | - | chr5_4:41055121-41055140 | None:intergenic | 40.0% | |
| ! | GATGCTCCTTTTCCTTGTAA+GGG | + | chr5_4:41055352-41055371 | Msa0851070:CDS | 40.0% |
| GATTTGCCCTTACAAGGAAA+AGG | - | chr5_4:41055361-41055380 | None:intergenic | 40.0% | |
| ACAGAAGATTTGCCCTTACA+AGG | - | chr5_4:41055367-41055386 | None:intergenic | 40.0% | |
| AAGGGCAAATCTTCTGTTGA+AGG | + | chr5_4:41055370-41055389 | Msa0851070:CDS | 40.0% | |
| CGAACCACTCATAATAAGGA+GGG | - | chr5_4:41055405-41055424 | None:intergenic | 40.0% | |
| CCTCCTTATTATGAGTGGTT+CGG | + | chr5_4:41055403-41055422 | Msa0851070:CDS | 40.0% | |
| CTCCTTATTATGAGTGGTTC+GGG | + | chr5_4:41055404-41055423 | Msa0851070:CDS | 40.0% | |
| TACCCGAACCACTCATAATA+AGG | - | chr5_4:41055409-41055428 | None:intergenic | 40.0% | |
| !!! | TGTTTTGTTGTTGTCTGTGC+AGG | + | chr5_4:41055500-41055519 | Msa0851070:intron | 40.0% |
| ATCAAACATGGACCGTTTGA+TGG | + | chr5_4:41055579-41055598 | Msa0851070:CDS | 40.0% | |
| AAATAGGGGGCGATATTATC+AGG | + | chr5_4:41055764-41055783 | Msa0851070:intron | 40.0% | |
| AATAGGGGGCGATATTATCA+GGG | + | chr5_4:41055765-41055784 | Msa0851070:intron | 40.0% | |
| TATGCTTTCTCTACCACTGA+AGG | - | chr5_4:41057187-41057206 | None:intergenic | 40.0% | |
| ! | TGCCACTCTCTTCATTTTCT+AGG | + | chr5_4:41057223-41057242 | Msa0851070:CDS | 40.0% |
| GAACACACGACTTTGATAGA+TGG | - | chr5_4:41057387-41057406 | None:intergenic | 40.0% | |
| !!! | GATATGGTTTTTTCCCAGGT+AGG | + | chr5_4:41057506-41057525 | Msa0851070:intron | 40.0% |
| AGCCGAACATAAACATGAGT+TGG | + | chr5_4:41057547-41057566 | Msa0851070:intron | 40.0% | |
| GCCGAACATAAACATGAGTT+GGG | + | chr5_4:41057548-41057567 | Msa0851070:intron | 40.0% | |
| TTTGGGTGATGAATTACCAC+AGG | - | chr5_4:41057778-41057797 | None:intergenic | 40.0% | |
| GTGGTAATTCATCACCCAAA+AGG | + | chr5_4:41057778-41057797 | Msa0851070:CDS | 40.0% | |
| ! | TTGGTACAGTGTGTCCTTTT+GGG | - | chr5_4:41057795-41057814 | None:intergenic | 40.0% |
| ! | GCCTGAATTCATGTTAGCTT+TGG | - | chr5_4:41058206-41058225 | None:intergenic | 40.0% |
| AGCTAACATGAATTCAGGCT+CGG | + | chr5_4:41058207-41058226 | Msa0851070:three_prime_UTR | 40.0% | |
| CTTCATGGGTTTCGAACAAG+TGG | + | chr5_4:41055259-41055278 | Msa0851070:CDS | 45.0% | |
| ! | CGATGCTCCTTTTCCTTGTA+AGG | + | chr5_4:41055351-41055370 | Msa0851070:CDS | 45.0% |
| TCGACCCTCCTTATTATGAG+TGG | + | chr5_4:41055398-41055417 | Msa0851070:CDS | 45.0% | |
| CCGAACCACTCATAATAAGG+AGG | - | chr5_4:41055406-41055425 | None:intergenic | 45.0% | |
| TGGTCTTCTTGGATTCTCAC+AGG | + | chr5_4:41055599-41055618 | Msa0851070:CDS | 45.0% | |
| ATAGGGGGCGATATTATCAG+GGG | + | chr5_4:41055766-41055785 | Msa0851070:intron | 45.0% | |
| GCAACGTGAACAAACGACAA+AGG | - | chr5_4:41055845-41055864 | None:intergenic | 45.0% | |
| TAATAGGAGGGGCAAAGTTC+AGG | + | chr5_4:41057158-41057177 | Msa0851070:CDS | 45.0% | |
| AATAGGAGGGGCAAAGTTCA+GGG | + | chr5_4:41057159-41057178 | Msa0851070:CDS | 45.0% | |
| GATGGGAGACTAAACTCGAT+GGG | - | chr5_4:41057369-41057388 | None:intergenic | 45.0% | |
| AGATGGGAGACTAAACTCGA+TGG | - | chr5_4:41057370-41057389 | None:intergenic | 45.0% | |
| ! | CTTGGTACAGTGTGTCCTTT+TGG | - | chr5_4:41057796-41057815 | None:intergenic | 45.0% |
| GGACACACTGTACCAAGATT+AGG | + | chr5_4:41057799-41057818 | Msa0851070:CDS | 45.0% | |
| !! | TCAATTAAATTAAATAAAAT+AGG | - | chr5_4:41055179-41055198 | None:intergenic | 5.0% |
| !!! | ATTATTATTTTTTCATAATT+TGG | + | chr5_4:41055439-41055458 | Msa0851070:intron | 5.0% |
| !!! | TTATTATTTTTTCATAATTT+GGG | + | chr5_4:41055440-41055459 | Msa0851070:intron | 5.0% |
| !!! | AATATTATTTTTAAAAGAAT+AGG | - | chr5_4:41058171-41058190 | None:intergenic | 5.0% |
| ! | GGACCGTTTGATGGTCTTCT+TGG | + | chr5_4:41055588-41055607 | Msa0851070:CDS | 50.0% |
| !! | ATATTATCAGGGGCACTGCC+AGG | + | chr5_4:41055776-41055795 | Msa0851070:CDS | 50.0% |
| CATACCTTCTCCTGAAGACC+TGG | - | chr5_4:41055797-41055816 | None:intergenic | 50.0% | |
| ! | AAAGTTCAGGGCACCTTCAG+TGG | + | chr5_4:41057171-41057190 | Msa0851070:CDS | 50.0% |
| ! | TGAGTGGTTCGGGTACAACG+AGG | + | chr5_4:41055414-41055433 | Msa0851070:CDS | 55.0% |
| ACTGCCAGGTCTTCAGGAGA+AGG | + | chr5_4:41055790-41055809 | Msa0851070:CDS | 55.0% | |
| !! | AGGGGCACTGCCAGGTCTTC+AGG | + | chr5_4:41055784-41055803 | Msa0851070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41055043 | 41058324 | 41055043 | ID=Msa0851070;Name=Msa0851070 |
| chr5_4 | mRNA | 41055043 | 41058324 | 41055043 | ID=Msa0851070-mRNA-1;Parent=Msa0851070;Name=Msa0851070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|1|1|6|261|231 |
| chr5_4 | exon | 41055043 | 41055435 | 41055043 | ID=Msa0851070-mRNA-1:exon:12912;Parent=Msa0851070-mRNA-1 |
| chr5_4 | exon | 41055522 | 41055620 | 41055522 | ID=Msa0851070-mRNA-1:exon:12913;Parent=Msa0851070-mRNA-1 |
| chr5_4 | exon | 41055770 | 41055811 | 41055770 | ID=Msa0851070-mRNA-1:exon:12914;Parent=Msa0851070-mRNA-1 |
| chr5_4 | exon | 41057115 | 41057244 | 41057115 | ID=Msa0851070-mRNA-1:exon:12915;Parent=Msa0851070-mRNA-1 |
| chr5_4 | exon | 41057719 | 41057820 | 41057719 | ID=Msa0851070-mRNA-1:exon:12916;Parent=Msa0851070-mRNA-1 |
| chr5_4 | exon | 41057969 | 41058324 | 41057969 | ID=Msa0851070-mRNA-1:exon:12917;Parent=Msa0851070-mRNA-1 |
| chr5_4 | five_prime_UTR | 41055043 | 41055207 | 41055043 | ID=Msa0851070-mRNA-1:five_prime_utr;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41055208 | 41055435 | 41055208 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41055522 | 41055620 | 41055522 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41055770 | 41055811 | 41055770 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41057115 | 41057244 | 41057115 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41057719 | 41057820 | 41057719 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | CDS | 41057969 | 41058063 | 41057969 | ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1 |
| chr5_4 | three_prime_UTR | 41058064 | 41058324 | 41058064 | ID=Msa0851070-mRNA-1:three_prime_utr;Parent=Msa0851070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
