AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851070 MtrunA17_Chr5g0427111 91.775 231 15 2 1 231 1 227 9.50e-157 433
Msa0851070 MtrunA17_Chr5g0412511 59.740 231 83 3 1 226 1 226 4.67e-99 287
Msa0851070 MtrunA17_Chr7g0254691 50.732 205 101 0 11 215 7 211 2.24e-74 226
Msa0851070 MtrunA17_Chr6g0464361 81.579 76 11 1 1 76 1 73 1.69e-40 133
Msa0851070 MtrunA17_Chr1g0192901 25.911 247 109 8 9 198 412 641 2.81e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851070 AT4G24380.1 65.333 225 78 0 7 231 6 230 7.58e-115 328
Msa0851070 AT4G24380.3 59.592 245 72 1 7 224 6 250 5.45e-109 314
Msa0851070 AT4G24380.2 71.429 161 46 0 7 167 6 166 1.42e-88 259
Msa0851070 AT5G65400.1 58.222 225 88 2 11 230 28 251 2.10e-88 261
Msa0851070 AT5G65400.2 58.222 225 88 2 11 230 46 269 4.28e-88 261
Msa0851070 AT4G24380.5 76.068 117 28 0 7 123 6 122 9.35e-68 204
Msa0851070 AT4G24380.6 62.416 149 56 0 76 224 53 201 1.94e-66 204
Msa0851070 AT4G24380.4 61.806 144 28 1 7 123 6 149 2.61e-62 192
Msa0851070 AT1G09280.1 28.700 223 120 8 8 198 349 564 2.64e-17 80.9

Find 63 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAATAAAATAGGAATTA+TGG 0.175184 5_4:-41055168 None:intergenic
GAATCCAATTTATAGGATTC+AGG 0.217310 5_4:-41055069 None:intergenic
ATGAATTGAATCCAATTTAT+AGG 0.234650 5_4:-41055076 None:intergenic
AAACCCTGAATCCTATAAAT+TGG 0.246445 5_4:+41055065 Msa0851070:five_prime_UTR
TCAATTAAATTAAATAAAAT+AGG 0.247280 5_4:-41055176 None:intergenic
CTTGGTACAGTGTGTCCTTT+TGG 0.255612 5_4:-41057793 None:intergenic
TTGCCCCTCCTATTATTATA+AGG 0.258599 5_4:-41057150 None:intergenic
AAAGCATATTCTTCACAAAT+TGG 0.265190 5_4:+41057199 Msa0851070:CDS
GTGAAATTCCTTATAATAAT+AGG 0.268426 5_4:+41057142 Msa0851070:CDS
GGACCGTTTGATGGTCTTCT+TGG 0.283927 5_4:+41055588 Msa0851070:CDS
CCAAGATTTATGTGTCTTCA+TGG 0.291824 5_4:+41055244 Msa0851070:CDS
TAATAGGAGGGGCAAAGTTC+AGG 0.313761 5_4:+41057158 Msa0851070:CDS
GATGAGCTAATACTTCTCTT+AGG 0.332661 5_4:+41058054 Msa0851070:exon
GCCTGAATTCATGTTAGCTT+TGG 0.341697 5_4:-41058203 None:intergenic
CTCCTTATTATGAGTGGTTC+GGG 0.359841 5_4:+41055404 Msa0851070:CDS
AGGGGCACTGCCAGGTCTTC+AGG 0.365615 5_4:+41055784 Msa0851070:CDS
CCTCCTTATTATGAGTGGTT+CGG 0.369390 5_4:+41055403 Msa0851070:CDS
AGTGGAAGAAAGATGGAATA+AGG 0.378734 5_4:-41055111 None:intergenic
TACCCGAACCACTCATAATA+AGG 0.388373 5_4:-41055406 None:intergenic
CCATGAAGACACATAAATCT+TGG 0.393495 5_4:-41055244 None:intergenic
TCCAAAGCTAACATGAATTC+AGG 0.403280 5_4:+41058202 Msa0851070:three_prime_UTR
ATTATAAGGAATTTCACTTT+GGG 0.410361 5_4:-41057136 None:intergenic
ATCAAACATGGACCGTTTGA+TGG 0.413598 5_4:+41055579 Msa0851070:CDS
TATTATAAGGAATTTCACTT+TGG 0.427378 5_4:-41057137 None:intergenic
AATCCAATTTATAGGATTCA+GGG 0.431564 5_4:-41055068 None:intergenic
ACAGAAGATTTGCCCTTACA+AGG 0.446247 5_4:-41055364 None:intergenic
AAGGGCAAATCTTCTGTTGA+AGG 0.465269 5_4:+41055370 Msa0851070:CDS
GGACACACTGTACCAAGATT+AGG 0.480578 5_4:+41057799 Msa0851070:CDS
AATAGGAGGGGCAAAGTTCA+GGG 0.486880 5_4:+41057159 Msa0851070:CDS
CAAGATTTATGTGTCTTCAT+GGG 0.487719 5_4:+41055245 Msa0851070:CDS
TGGTCTTCTTGGATTCTCAC+AGG 0.488533 5_4:+41055599 Msa0851070:CDS
ATTAGTAGCACACCTAATCT+TGG 0.492125 5_4:-41057811 None:intergenic
GATTTGCCCTTACAAGGAAA+AGG 0.494545 5_4:-41055358 None:intergenic
ATATTATCAGGGGCACTGCC+AGG 0.501875 5_4:+41055776 Msa0851070:CDS
GAAAGATGGAATAAGGTTTG+TGG 0.508983 5_4:-41055104 None:intergenic
ATTTAATTGAAGAAGAGAGA+TGG 0.516375 5_4:+41055189 Msa0851070:exon
TCTTTCTATGAAACTCATCA+TGG 0.528093 5_4:-41057987 None:intergenic
CATACCTTCTCCTGAAGACC+TGG 0.535143 5_4:-41055794 None:intergenic
TCGACCCTCCTTATTATGAG+TGG 0.538420 5_4:+41055398 Msa0851070:CDS
GTGGTAATTCATCACCCAAA+AGG 0.539105 5_4:+41057778 Msa0851070:CDS
TATTATATCTGAAAATAAAG+AGG 0.545461 5_4:+41058021 Msa0851070:CDS
ATTGTATTTGTTGTGATGAG+TGG 0.548332 5_4:-41055129 None:intergenic
TTTGGGTGATGAATTACCAC+AGG 0.551356 5_4:-41057775 None:intergenic
AAAGTTCAGGGCACCTTCAG+TGG 0.556647 5_4:+41057171 Msa0851070:CDS
CTTCATGGGTTTCGAACAAG+TGG 0.558594 5_4:+41055259 Msa0851070:CDS
TGTGATGAGTGGAAGAAAGA+TGG 0.564457 5_4:-41055118 None:intergenic
AGCTAACATGAATTCAGGCT+CGG 0.569876 5_4:+41058207 Msa0851070:three_prime_UTR
ACTGCCAGGTCTTCAGGAGA+AGG 0.577964 5_4:+41055790 Msa0851070:CDS
ATTCCTTATAATAATAGGAG+GGG 0.578464 5_4:+41057147 Msa0851070:CDS
TATGCTTTCTCTACCACTGA+AGG 0.584580 5_4:-41057184 None:intergenic
AAATTCCTTATAATAATAGG+AGG 0.592167 5_4:+41057145 Msa0851070:CDS
AATCCAAGAAGACCATCAAA+CGG 0.617555 5_4:-41055591 None:intergenic
AATTCCTTATAATAATAGGA+GGG 0.618651 5_4:+41057146 Msa0851070:CDS
ATAGGAATATATAAGATGTG+TGG 0.621438 5_4:-41058150 None:intergenic
CCGAACCACTCATAATAAGG+AGG 0.630666 5_4:-41055403 None:intergenic
TACCTAGAAAATGAAGAGAG+TGG 0.639422 5_4:-41057225 None:intergenic
CGAACCACTCATAATAAGGA+GGG 0.642917 5_4:-41055402 None:intergenic
AGATAATTGTGTTGAACCTG+TGG 0.656624 5_4:+41057759 Msa0851070:CDS
GAGGATTACATGATCAAACA+TGG 0.657463 5_4:+41055567 Msa0851070:CDS
AGATGGAATAAGGTTTGTGG+AGG 0.657667 5_4:-41055101 None:intergenic
TGAGTGTCTGCAATATATTG+AGG 0.665567 5_4:+41055548 Msa0851070:CDS
AATAAAATAGGAATTATGGA+CGG 0.670078 5_4:-41055164 None:intergenic
TGAGTGGTTCGGGTACAACG+AGG 0.765548 5_4:+41055414 Msa0851070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAAATAGGAATTA+TGG - chr5_4:41055171-41055190 None:intergenic 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr5_4:41056155-41056174 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr5_4:41056156-41056175 None:intergenic 10.0%
!! AAAATTATTGAATTTATCTT+CGG - chr5_4:41056692-41056711 None:intergenic 10.0%
!! ATCAAATATTGAAAATTTGA+AGG + chr5_4:41055661-41055680 Msa0851070:intron 15.0%
!!! TGTTTGATTTGATTTATAAT+TGG + chr5_4:41055698-41055717 Msa0851070:intron 15.0%
!!! ATCTTTCTTTTTGAAAAATA+AGG - chr5_4:41056077-41056096 None:intergenic 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr5_4:41056441-41056460 Msa0851070:intron 15.0%
!! ATTATAAATTCACAAACAAA+TGG - chr5_4:41057012-41057031 None:intergenic 15.0%
!! TTTCCCTAAAAAAAAAAAAA+AGG + chr5_4:41057067-41057086 Msa0851070:intron 15.0%
!!! TGACCTTTTTTTTTTTTTTA+GGG - chr5_4:41057073-41057092 None:intergenic 15.0%
!!! ATGACCTTTTTTTTTTTTTT+AGG - chr5_4:41057074-41057093 None:intergenic 15.0%
!!! TTTATGTTACTTATATTTGT+AGG + chr5_4:41057093-41057112 Msa0851070:intron 15.0%
!!! TTATGTTACTTATATTTGTA+GGG + chr5_4:41057094-41057113 Msa0851070:intron 15.0%
!! TAAATACATTGAAAATTGAA+AGG - chr5_4:41057262-41057281 None:intergenic 15.0%
!! TATTATATCTGAAAATAAAG+AGG + chr5_4:41058021-41058040 Msa0851070:CDS 15.0%
!! AAAAATAATATTATTGTCTG+TGG + chr5_4:41058179-41058198 Msa0851070:three_prime_UTR 15.0%
!!! ATGTAAAATGCATTTTATAT+AGG - chr5_4:41058301-41058320 None:intergenic 15.0%
!! ATGAATTGAATCCAATTTAT+AGG - chr5_4:41055079-41055098 None:intergenic 20.0%
!! AATAAAATAGGAATTATGGA+CGG - chr5_4:41055167-41055186 None:intergenic 20.0%
!! TGTTTGAATTTGACAAAATA+GGG + chr5_4:41055749-41055768 Msa0851070:intron 20.0%
!!! ATTTTTATTTTATCCCTAGA+CGG + chr5_4:41055903-41055922 Msa0851070:intron 20.0%
!!! AATAAGGTATCATTAAGTTA+TGG - chr5_4:41056061-41056080 None:intergenic 20.0%
!! CTCTATAAATTAATAATGTC+AGG - chr5_4:41056468-41056487 None:intergenic 20.0%
!!! AGTTTTAACTGTATTGTTTA+AGG + chr5_4:41056486-41056505 Msa0851070:intron 20.0%
!!! TAGAGATAAGAGTTTTTTTA+TGG - chr5_4:41056654-41056673 None:intergenic 20.0%
!!! TCAATAATTTTTTTTGAGCT+TGG + chr5_4:41056701-41056720 Msa0851070:intron 20.0%
!!! TAGAGATAAGAGTTTTTTTA+TGG - chr5_4:41056654-41056673 None:intergenic 20.0%
!! GTGTAGAAATTAAACTAAAA+TGG + chr5_4:41056968-41056987 Msa0851070:intron 20.0%
!! TATTTCGACTATCTAAAAAA+TGG + chr5_4:41057040-41057059 Msa0851070:intron 20.0%
!! ATTATAAGGAATTTCACTTT+GGG - chr5_4:41057139-41057158 None:intergenic 20.0%
!! TATTATAAGGAATTTCACTT+TGG - chr5_4:41057140-41057159 None:intergenic 20.0%
!! GTGAAATTCCTTATAATAAT+AGG + chr5_4:41057142-41057161 Msa0851070:CDS 20.0%
!! AAATTCCTTATAATAATAGG+AGG + chr5_4:41057145-41057164 Msa0851070:CDS 20.0%
!! AATTCCTTATAATAATAGGA+GGG + chr5_4:41057146-41057165 Msa0851070:CDS 20.0%
!! TTCTACATTAACTTTAGATA+TGG + chr5_4:41057490-41057509 Msa0851070:intron 20.0%
!!! ATAAGCACAAATTTCTTTTA+AGG - chr5_4:41057694-41057713 None:intergenic 20.0%
!!! TTGATTAAACAACCATTTTT+GGG - chr5_4:41057926-41057945 None:intergenic 20.0%
!!! ATTGATTAAACAACCATTTT+TGG - chr5_4:41057927-41057946 None:intergenic 20.0%
!! TCTTATCATCTGAAAAATAA+AGG - chr5_4:41057958-41057977 None:intergenic 20.0%
!!! TTCCAAATATATTTTTGAAG+TGG + chr5_4:41058125-41058144 Msa0851070:three_prime_UTR 20.0%
!! ATCCACTTCAAAAATATATT+TGG - chr5_4:41058130-41058149 None:intergenic 20.0%
! AATCCAATTTATAGGATTCA+GGG - chr5_4:41055071-41055090 None:intergenic 25.0%
! ATTTAATTGAAGAAGAGAGA+TGG + chr5_4:41055189-41055208 Msa0851070:exon 25.0%
!!! CATAAATCTTGGTTTTCTTA+CGG - chr5_4:41055236-41055255 None:intergenic 25.0%
! TGAAAAAACAGATACATAAG+TGG + chr5_4:41055290-41055309 Msa0851070:CDS 25.0%
! TTGAATTAAGAAGCTAATGA+AGG - chr5_4:41055627-41055646 None:intergenic 25.0%
! GTGTTTGAATTTGACAAAAT+AGG + chr5_4:41055748-41055767 Msa0851070:intron 25.0%
! GTTTGAATTTGACAAAATAG+GGG + chr5_4:41055750-41055769 Msa0851070:intron 25.0%
! TTTGAATTTGACAAAATAGG+GGG + chr5_4:41055751-41055770 Msa0851070:intron 25.0%
! TAAATTTGAACATGAGACAA+CGG + chr5_4:41056004-41056023 Msa0851070:intron 25.0%
! CTAATATATGGAGTATGTTT+CGG + chr5_4:41056106-41056125 Msa0851070:intron 25.0%
! TAATATATGGAGTATGTTTC+GGG + chr5_4:41056107-41056126 Msa0851070:intron 25.0%
! TAAATTAATAATGTCAGGAC+CGG - chr5_4:41056463-41056482 None:intergenic 25.0%
! ATTGCGTAAATAATGACATA+AGG + chr5_4:41056588-41056607 Msa0851070:intron 25.0%
!!! ATAAGAGTTTTTTTATGGAC+TGG - chr5_4:41056649-41056668 None:intergenic 25.0%
!!! ATAAGAGTTTTTTTATGGAC+TGG - chr5_4:41056649-41056668 None:intergenic 25.0%
!!! AATTTTTTGTGACCTAAGTA+AGG + chr5_4:41056769-41056788 Msa0851070:intron 25.0%
! ACATCTTAATATCCTTACTT+AGG - chr5_4:41056784-41056803 None:intergenic 25.0%
! AAGTAAGGATATTAAGATGT+TGG + chr5_4:41056784-41056803 Msa0851070:intron 25.0%
! ATTCCTTATAATAATAGGAG+GGG + chr5_4:41057147-41057166 Msa0851070:CDS 25.0%
! AAAGCATATTCTTCACAAAT+TGG + chr5_4:41057199-41057218 Msa0851070:CDS 25.0%
! TAAAAAAACTATACCTACCT+GGG - chr5_4:41057522-41057541 None:intergenic 25.0%
! ATTGTGACATAGATGAAAAA+GGG - chr5_4:41057618-41057637 None:intergenic 25.0%
! TATTGTGACATAGATGAAAA+AGG - chr5_4:41057619-41057638 None:intergenic 25.0%
!! GTTTATATGTTTCTAATGAG+TGG + chr5_4:41057850-41057869 Msa0851070:intron 25.0%
! TTTATCATTTCTCCCAAAAA+TGG + chr5_4:41057911-41057930 Msa0851070:intron 25.0%
! ATAGGAATATATAAGATGTG+TGG - chr5_4:41058153-41058172 None:intergenic 25.0%
AAACCCTGAATCCTATAAAT+TGG + chr5_4:41055065-41055084 Msa0851070:five_prime_UTR 30.0%
GAATCCAATTTATAGGATTC+AGG - chr5_4:41055072-41055091 None:intergenic 30.0%
!! ATTGTATTTGTTGTGATGAG+TGG - chr5_4:41055132-41055151 None:intergenic 30.0%
CAAGATTTATGTGTCTTCAT+GGG + chr5_4:41055245-41055264 Msa0851070:CDS 30.0%
GAAAATTTGAAGGATCATTG+TGG + chr5_4:41055671-41055690 Msa0851070:intron 30.0%
CTATAAAGATCTGAATCTGA+TGG + chr5_4:41055723-41055742 Msa0851070:intron 30.0%
! GAGAAGGTATGTAAAAAACT+GGG + chr5_4:41055806-41055825 Msa0851070:intron 30.0%
GTTATTTATCATTCCGTCTA+GGG - chr5_4:41055919-41055938 None:intergenic 30.0%
! TGTTATTTATCATTCCGTCT+AGG - chr5_4:41055920-41055939 None:intergenic 30.0%
GATTGTGTCATGCTAATATA+TGG + chr5_4:41056094-41056113 Msa0851070:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr5_4:41056128-41056147 Msa0851070:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr5_4:41056137-41056156 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr5_4:41056230-41056249 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr5_4:41056348-41056367 Msa0851070:intron 30.0%
ACTGTACATACCAAACAAAA+AGG - chr5_4:41056361-41056380 None:intergenic 30.0%
AAGGATATTAAGATGTTGGA+AGG + chr5_4:41056788-41056807 Msa0851070:intron 30.0%
GACGTTTATATGTACATAAG+AGG + chr5_4:41056911-41056930 Msa0851070:intron 30.0%
ATAAGATTGCTGAAATTGCT+AGG + chr5_4:41056934-41056953 Msa0851070:intron 30.0%
TAAGATTGCTGAAATTGCTA+GGG + chr5_4:41056935-41056954 Msa0851070:intron 30.0%
TTACTTATATTTGTAGGGTG+TGG + chr5_4:41057099-41057118 Msa0851070:intron 30.0%
ACATTGAAAATTGAAAGGAG+AGG - chr5_4:41057257-41057276 None:intergenic 30.0%
!!! TTTAGATATGGTTTTTTCCC+AGG + chr5_4:41057502-41057521 Msa0851070:intron 30.0%
GTAAAAAAACTATACCTACC+TGG - chr5_4:41057523-41057542 None:intergenic 30.0%
AAGAAATTTGTGCTTATTGC+AGG + chr5_4:41057697-41057716 Msa0851070:intron 30.0%
!!! CATGATTTTTTGAAGGAGTA+TGG + chr5_4:41057724-41057743 Msa0851070:CDS 30.0%
TCTTTCTATGAAACTCATCA+TGG - chr5_4:41057990-41058009 None:intergenic 30.0%
GAAAGATGGAATAAGGTTTG+TGG - chr5_4:41055107-41055126 None:intergenic 35.0%
AGTGGAAGAAAGATGGAATA+AGG - chr5_4:41055114-41055133 None:intergenic 35.0%
CCATGAAGACACATAAATCT+TGG - chr5_4:41055247-41055266 None:intergenic 35.0%
CCAAGATTTATGTGTCTTCA+TGG + chr5_4:41055244-41055263 Msa0851070:CDS 35.0%
!! AGTTTGTCTAGAACGTTTTG+TGG - chr5_4:41055316-41055335 None:intergenic 35.0%
TGAGTGTCTGCAATATATTG+AGG + chr5_4:41055548-41055567 Msa0851070:CDS 35.0%
GAGGATTACATGATCAAACA+TGG + chr5_4:41055567-41055586 Msa0851070:CDS 35.0%
AATCCAAGAAGACCATCAAA+CGG - chr5_4:41055594-41055613 None:intergenic 35.0%
! GGAGAAGGTATGTAAAAAAC+TGG + chr5_4:41055805-41055824 Msa0851070:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr5_4:41056138-41056157 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr5_4:41056274-41056293 None:intergenic 35.0%
CTAATTTACGTTGAGTCACA+AGG + chr5_4:41056296-41056315 Msa0851070:intron 35.0%
!!! GTTTTTTTATGGACTGGCAT+CGG - chr5_4:41056643-41056662 None:intergenic 35.0%
TTCACAAACAAATGGAAGCA+GGG - chr5_4:41057004-41057023 None:intergenic 35.0%
ATTCACAAACAAATGGAAGC+AGG - chr5_4:41057005-41057024 None:intergenic 35.0%
TTGCCCCTCCTATTATTATA+AGG - chr5_4:41057153-41057172 None:intergenic 35.0%
TACCTAGAAAATGAAGAGAG+TGG - chr5_4:41057228-41057247 None:intergenic 35.0%
AACACACGACTTTGATAGAT+GGG - chr5_4:41057386-41057405 None:intergenic 35.0%
CAAAGTCGTGTGTTCAAATT+CGG + chr5_4:41057392-41057411 Msa0851070:intron 35.0%
ACCCAACTCATGTTTATGTT+CGG - chr5_4:41057552-41057571 None:intergenic 35.0%
!!! AGGAGAGCATGATTTTTTGA+AGG + chr5_4:41057717-41057736 Msa0851070:intron 35.0%
AGATAATTGTGTTGAACCTG+TGG + chr5_4:41057759-41057778 Msa0851070:CDS 35.0%
ATTAGTAGCACACCTAATCT+TGG - chr5_4:41057814-41057833 None:intergenic 35.0%
GATGAGCTAATACTTCTCTT+AGG + chr5_4:41058054-41058073 Msa0851070:exon 35.0%
TCCAAAGCTAACATGAATTC+AGG + chr5_4:41058202-41058221 Msa0851070:three_prime_UTR 35.0%
AGATGGAATAAGGTTTGTGG+AGG - chr5_4:41055104-41055123 None:intergenic 40.0%
TGTGATGAGTGGAAGAAAGA+TGG - chr5_4:41055121-41055140 None:intergenic 40.0%
! GATGCTCCTTTTCCTTGTAA+GGG + chr5_4:41055352-41055371 Msa0851070:CDS 40.0%
GATTTGCCCTTACAAGGAAA+AGG - chr5_4:41055361-41055380 None:intergenic 40.0%
ACAGAAGATTTGCCCTTACA+AGG - chr5_4:41055367-41055386 None:intergenic 40.0%
AAGGGCAAATCTTCTGTTGA+AGG + chr5_4:41055370-41055389 Msa0851070:CDS 40.0%
CGAACCACTCATAATAAGGA+GGG - chr5_4:41055405-41055424 None:intergenic 40.0%
CCTCCTTATTATGAGTGGTT+CGG + chr5_4:41055403-41055422 Msa0851070:CDS 40.0%
CTCCTTATTATGAGTGGTTC+GGG + chr5_4:41055404-41055423 Msa0851070:CDS 40.0%
TACCCGAACCACTCATAATA+AGG - chr5_4:41055409-41055428 None:intergenic 40.0%
!!! TGTTTTGTTGTTGTCTGTGC+AGG + chr5_4:41055500-41055519 Msa0851070:intron 40.0%
ATCAAACATGGACCGTTTGA+TGG + chr5_4:41055579-41055598 Msa0851070:CDS 40.0%
AAATAGGGGGCGATATTATC+AGG + chr5_4:41055764-41055783 Msa0851070:intron 40.0%
AATAGGGGGCGATATTATCA+GGG + chr5_4:41055765-41055784 Msa0851070:intron 40.0%
TATGCTTTCTCTACCACTGA+AGG - chr5_4:41057187-41057206 None:intergenic 40.0%
! TGCCACTCTCTTCATTTTCT+AGG + chr5_4:41057223-41057242 Msa0851070:CDS 40.0%
GAACACACGACTTTGATAGA+TGG - chr5_4:41057387-41057406 None:intergenic 40.0%
!!! GATATGGTTTTTTCCCAGGT+AGG + chr5_4:41057506-41057525 Msa0851070:intron 40.0%
AGCCGAACATAAACATGAGT+TGG + chr5_4:41057547-41057566 Msa0851070:intron 40.0%
GCCGAACATAAACATGAGTT+GGG + chr5_4:41057548-41057567 Msa0851070:intron 40.0%
TTTGGGTGATGAATTACCAC+AGG - chr5_4:41057778-41057797 None:intergenic 40.0%
GTGGTAATTCATCACCCAAA+AGG + chr5_4:41057778-41057797 Msa0851070:CDS 40.0%
! TTGGTACAGTGTGTCCTTTT+GGG - chr5_4:41057795-41057814 None:intergenic 40.0%
! GCCTGAATTCATGTTAGCTT+TGG - chr5_4:41058206-41058225 None:intergenic 40.0%
AGCTAACATGAATTCAGGCT+CGG + chr5_4:41058207-41058226 Msa0851070:three_prime_UTR 40.0%
CTTCATGGGTTTCGAACAAG+TGG + chr5_4:41055259-41055278 Msa0851070:CDS 45.0%
! CGATGCTCCTTTTCCTTGTA+AGG + chr5_4:41055351-41055370 Msa0851070:CDS 45.0%
TCGACCCTCCTTATTATGAG+TGG + chr5_4:41055398-41055417 Msa0851070:CDS 45.0%
CCGAACCACTCATAATAAGG+AGG - chr5_4:41055406-41055425 None:intergenic 45.0%
TGGTCTTCTTGGATTCTCAC+AGG + chr5_4:41055599-41055618 Msa0851070:CDS 45.0%
ATAGGGGGCGATATTATCAG+GGG + chr5_4:41055766-41055785 Msa0851070:intron 45.0%
GCAACGTGAACAAACGACAA+AGG - chr5_4:41055845-41055864 None:intergenic 45.0%
TAATAGGAGGGGCAAAGTTC+AGG + chr5_4:41057158-41057177 Msa0851070:CDS 45.0%
AATAGGAGGGGCAAAGTTCA+GGG + chr5_4:41057159-41057178 Msa0851070:CDS 45.0%
GATGGGAGACTAAACTCGAT+GGG - chr5_4:41057369-41057388 None:intergenic 45.0%
AGATGGGAGACTAAACTCGA+TGG - chr5_4:41057370-41057389 None:intergenic 45.0%
! CTTGGTACAGTGTGTCCTTT+TGG - chr5_4:41057796-41057815 None:intergenic 45.0%
GGACACACTGTACCAAGATT+AGG + chr5_4:41057799-41057818 Msa0851070:CDS 45.0%
!! TCAATTAAATTAAATAAAAT+AGG - chr5_4:41055179-41055198 None:intergenic 5.0%
!!! ATTATTATTTTTTCATAATT+TGG + chr5_4:41055439-41055458 Msa0851070:intron 5.0%
!!! TTATTATTTTTTCATAATTT+GGG + chr5_4:41055440-41055459 Msa0851070:intron 5.0%
!!! AATATTATTTTTAAAAGAAT+AGG - chr5_4:41058171-41058190 None:intergenic 5.0%
! GGACCGTTTGATGGTCTTCT+TGG + chr5_4:41055588-41055607 Msa0851070:CDS 50.0%
!! ATATTATCAGGGGCACTGCC+AGG + chr5_4:41055776-41055795 Msa0851070:CDS 50.0%
CATACCTTCTCCTGAAGACC+TGG - chr5_4:41055797-41055816 None:intergenic 50.0%
! AAAGTTCAGGGCACCTTCAG+TGG + chr5_4:41057171-41057190 Msa0851070:CDS 50.0%
! TGAGTGGTTCGGGTACAACG+AGG + chr5_4:41055414-41055433 Msa0851070:CDS 55.0%
ACTGCCAGGTCTTCAGGAGA+AGG + chr5_4:41055790-41055809 Msa0851070:CDS 55.0%
!! AGGGGCACTGCCAGGTCTTC+AGG + chr5_4:41055784-41055803 Msa0851070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 41055043 41058324 41055043 ID=Msa0851070;Name=Msa0851070
chr5_4 mRNA 41055043 41058324 41055043 ID=Msa0851070-mRNA-1;Parent=Msa0851070;Name=Msa0851070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|1|1|6|261|231
chr5_4 exon 41055043 41055435 41055043 ID=Msa0851070-mRNA-1:exon:12912;Parent=Msa0851070-mRNA-1
chr5_4 exon 41055522 41055620 41055522 ID=Msa0851070-mRNA-1:exon:12913;Parent=Msa0851070-mRNA-1
chr5_4 exon 41055770 41055811 41055770 ID=Msa0851070-mRNA-1:exon:12914;Parent=Msa0851070-mRNA-1
chr5_4 exon 41057115 41057244 41057115 ID=Msa0851070-mRNA-1:exon:12915;Parent=Msa0851070-mRNA-1
chr5_4 exon 41057719 41057820 41057719 ID=Msa0851070-mRNA-1:exon:12916;Parent=Msa0851070-mRNA-1
chr5_4 exon 41057969 41058324 41057969 ID=Msa0851070-mRNA-1:exon:12917;Parent=Msa0851070-mRNA-1
chr5_4 five_prime_UTR 41055043 41055207 41055043 ID=Msa0851070-mRNA-1:five_prime_utr;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41055208 41055435 41055208 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41055522 41055620 41055522 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41055770 41055811 41055770 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41057115 41057244 41057115 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41057719 41057820 41057719 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 CDS 41057969 41058063 41057969 ID=Msa0851070-mRNA-1:cds;Parent=Msa0851070-mRNA-1
chr5_4 three_prime_UTR 41058064 41058324 41058064 ID=Msa0851070-mRNA-1:three_prime_utr;Parent=Msa0851070-mRNA-1
Gene Sequence

>Msa0851070

ATGGAAAACGAAGCGAAGAAAAACACCGTAAGAAAACCAAGATTTATGTGTCTTCATGGGTTTCGAACAAGTGGAGAGATCATGAAAAAACAGATACATAAGTGGCCACAAAACGTTCTAGACAAACTCGATCTTGTTTTTGTCGATGCTCCTTTTCCTTGTAAGGGCAAATCTTCTGTTGAAGGCATTTTCGACCCTCCTTATTATGAGTGGTTCGGGTACAACGAGGATTTTACAGAGTACGCAAACTTTGATGAGTGTCTGCAATATATTGAGGATTACATGATCAAACATGGACCGTTTGATGGTCTTCTTGGATTCTCACAGGGGGCGATATTATCAGGGGCACTGCCAGGTCTTCAGGAGAAGGGTGTGGCACTCACGAAAGTTCCCAAAGTGAAATTCCTTATAATAATAGGAGGGGCAAAGTTCAGGGCACCTTCAGTGGTAGAGAAAGCATATTCTTCACAAATTGGTTGCCACTCTCTTCATTTTCTAGGAGAGCATGATTTTTTGAAGGAGTATGGAAAAGAACTAATAGATAATTGTGTTGAACCTGTGGTAATTCATCACCCAAAAGGACACACTGTACCAAGATTAGATGATAAGAGCTTGAACACCATGATGAGTTTCATAGAAAGAATTCAAAATGATATTATATCTGAAAATAAAGAGGAGATTCAGTCGATGAGCTAA

Protein sequence

>Msa0851070

MENEAKKNTVRKPRFMCLHGFRTSGEIMKKQIHKWPQNVLDKLDLVFVDAPFPCKGKSSVEGIFDPPYYEWFGYNEDFTEYANFDECLQYIEDYMIKHGPFDGLLGFSQGAILSGALPGLQEKGVALTKVPKVKFLIIIGGAKFRAPSVVEKAYSSQIGCHSLHFLGEHDFLKEYGKELIDNCVEPVVIHHPKGHTVPRLDDKSLNTMMSFIERIQNDIISENKEEIQSMS*