Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732350 | XP_003615240.1 | 92.208 | 231 | 14 | 2 | 1 | 231 | 1 | 227 | 2.25e-153 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732350 | sp|Q9VDL1|LOVG_DROME | 30.493 | 223 | 136 | 9 | 6 | 216 | 24 | 239 | 5.64e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732350 | G7KBG3 | 92.208 | 231 | 14 | 2 | 1 | 231 | 1 | 227 | 1.07e-153 | 435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732350 | Msa0773380 | 0.843015 | 1.816944e-58 | -8.615850e-47 |
| Msa0732350 | Msa0827630 | 0.851404 | 9.073281e-61 | -8.615850e-47 |
| Msa0732350 | Msa0851070 | 0.833818 | 4.285632e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732350 | MtrunA17_Chr5g0427111 | 92.208 | 231 | 14 | 2 | 1 | 231 | 1 | 227 | 2.07e-157 | 435 |
| Msa0732350 | MtrunA17_Chr5g0412511 | 59.740 | 231 | 83 | 3 | 1 | 226 | 1 | 226 | 4.23e-99 | 287 |
| Msa0732350 | MtrunA17_Chr7g0254691 | 51.220 | 205 | 100 | 0 | 11 | 215 | 7 | 211 | 4.57e-75 | 228 |
| Msa0732350 | MtrunA17_Chr6g0464361 | 81.579 | 76 | 11 | 1 | 1 | 76 | 1 | 73 | 1.74e-40 | 133 |
| Msa0732350 | MtrunA17_Chr1g0192901 | 25.506 | 247 | 110 | 8 | 9 | 198 | 412 | 641 | 8.46e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732350 | AT4G24380.1 | 67.431 | 218 | 71 | 0 | 7 | 224 | 6 | 223 | 1.64e-115 | 330 |
| Msa0732350 | AT4G24380.3 | 60.000 | 245 | 71 | 1 | 7 | 224 | 6 | 250 | 1.11e-109 | 316 |
| Msa0732350 | AT4G24380.2 | 72.050 | 161 | 45 | 0 | 7 | 167 | 6 | 166 | 2.53e-89 | 261 |
| Msa0732350 | AT5G65400.1 | 58.222 | 225 | 88 | 2 | 11 | 230 | 28 | 251 | 1.78e-88 | 262 |
| Msa0732350 | AT5G65400.2 | 58.222 | 225 | 88 | 2 | 11 | 230 | 46 | 269 | 3.12e-88 | 262 |
| Msa0732350 | AT4G24380.5 | 76.923 | 117 | 27 | 0 | 7 | 123 | 6 | 122 | 1.85e-68 | 206 |
| Msa0732350 | AT4G24380.6 | 63.087 | 149 | 55 | 0 | 76 | 224 | 53 | 201 | 4.04e-67 | 206 |
| Msa0732350 | AT4G24380.4 | 62.500 | 144 | 27 | 1 | 7 | 123 | 6 | 149 | 5.13e-63 | 194 |
| Msa0732350 | AT1G09280.1 | 28.700 | 223 | 120 | 8 | 8 | 198 | 349 | 564 | 2.71e-17 | 80.9 |
Find 51 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTACAGTGTGTCCTTT+TGG | 0.255612 | 5_1:+44704329 | None:intergenic |
| TTGCCCCTCCTATTATTATA+AGG | 0.258599 | 5_1:+44705001 | None:intergenic |
| AAAGCATATTCTTCACAAAT+TGG | 0.265190 | 5_1:-44704952 | Msa0732350:CDS |
| GTGAAATTCCTTATAATAAT+AGG | 0.268426 | 5_1:-44705009 | Msa0732350:CDS |
| GGACCGTTTGATGGTCTTCT+TGG | 0.283927 | 5_1:-44706787 | Msa0732350:CDS |
| CCAAGATTTATGTGTCTTCA+TGG | 0.291824 | 5_1:-44707128 | Msa0732350:CDS |
| TAATAGGAGGGGCAAAGTTC+AGG | 0.313761 | 5_1:-44704993 | Msa0732350:CDS |
| GATGAGCTAATACTTCTCTT+AGG | 0.332661 | 5_1:-44703740 | Msa0732350:exon |
| CTCCTTATTATGAGTGGTTC+GGG | 0.359841 | 5_1:-44706968 | Msa0732350:CDS |
| AGGGGCACTGCCAGGTCTTC+AGG | 0.365615 | 5_1:-44706591 | Msa0732350:CDS |
| CCTCCTTATTATGAGTGGTT+CGG | 0.369390 | 5_1:-44706969 | Msa0732350:CDS |
| GCCTGAATCCATGTTAGCTT+TGG | 0.370714 | 5_1:+44703591 | None:intergenic |
| TACCCGAACCACTCATAATA+AGG | 0.388373 | 5_1:+44706966 | None:intergenic |
| CCATGAAGACACATAAATCT+TGG | 0.393495 | 5_1:+44707128 | None:intergenic |
| TCCAAAGCTAACATGGATTC+AGG | 0.398376 | 5_1:-44703592 | Msa0732350:three_prime_UTR |
| ATTATAAGGAATTTCACTTT+GGG | 0.410361 | 5_1:+44705015 | None:intergenic |
| ATCAAACATGGACCGTTTGA+TGG | 0.413598 | 5_1:-44706796 | Msa0732350:CDS |
| TATTATAAGGAATTTCACTT+TGG | 0.427378 | 5_1:+44705014 | None:intergenic |
| ACAGAAGATTTGCCCTTACA+AGG | 0.446247 | 5_1:+44707008 | None:intergenic |
| AAGGGCAAATCTTCTGTTGA+AGG | 0.465269 | 5_1:-44707002 | Msa0732350:CDS |
| GGACACACTGTACCAAGATT+AGG | 0.480578 | 5_1:-44704323 | Msa0732350:intron |
| AATAGGAGGGGCAAAGTTCA+GGG | 0.486880 | 5_1:-44704992 | Msa0732350:CDS |
| CAAGATTTATGTGTCTTCAT+GGG | 0.487719 | 5_1:-44707127 | Msa0732350:CDS |
| TGGTCTTCTTGGATTCTCAC+AGG | 0.488533 | 5_1:-44706776 | Msa0732350:intron |
| GATTTGCCCTTACAAGGAAA+AGG | 0.494545 | 5_1:+44707014 | None:intergenic |
| AGTAGTAGCACACCTAATCT+TGG | 0.501797 | 5_1:+44704311 | None:intergenic |
| ATATTATCAGGGGCACTGCC+AGG | 0.501875 | 5_1:-44706599 | Msa0732350:CDS |
| CACACCTTCTCCTGAAGACC+TGG | 0.507013 | 5_1:+44706581 | None:intergenic |
| TCTTTCTATGAAACTCATCA+TGG | 0.528093 | 5_1:+44703807 | None:intergenic |
| TCGACCCTCCTTATTATGAG+TGG | 0.538420 | 5_1:-44706974 | Msa0732350:CDS |
| GTGGTAATTCATCACCCAAA+AGG | 0.539105 | 5_1:-44704344 | Msa0732350:CDS |
| TATTATATCTGAAAATAAAG+AGG | 0.545461 | 5_1:-44703773 | Msa0732350:CDS |
| AGCTAACATGGATTCAGGCT+CGG | 0.548144 | 5_1:-44703587 | Msa0732350:three_prime_UTR |
| TTTGGGTGATGAATTACCAC+AGG | 0.551356 | 5_1:+44704347 | None:intergenic |
| AAAGTTCAGGGCACCTTCAG+TGG | 0.556647 | 5_1:-44704980 | Msa0732350:CDS |
| CTTCATGGGTTTCGAACAAG+TGG | 0.558594 | 5_1:-44707113 | Msa0732350:CDS |
| ACTGCCAGGTCTTCAGGAGA+AGG | 0.565791 | 5_1:-44706585 | Msa0732350:intron |
| TCTGTGGTCCAAAGCTAACA+TGG | 0.568715 | 5_1:-44703599 | Msa0732350:three_prime_UTR |
| ATTCCTTATAATAATAGGAG+GGG | 0.578464 | 5_1:-44705004 | Msa0732350:CDS |
| TATGCTTTCTCTACCACTGA+AGG | 0.584580 | 5_1:+44704967 | None:intergenic |
| AAATTCCTTATAATAATAGG+AGG | 0.592167 | 5_1:-44705006 | Msa0732350:CDS |
| AATCCAAGAAGACCATCAAA+CGG | 0.617555 | 5_1:+44706784 | None:intergenic |
| AATTCCTTATAATAATAGGA+GGG | 0.618651 | 5_1:-44705005 | Msa0732350:CDS |
| ATAGGAATATATAAGATGTG+TGG | 0.621438 | 5_1:+44703644 | None:intergenic |
| CCGAACCACTCATAATAAGG+AGG | 0.630666 | 5_1:+44706969 | None:intergenic |
| TACCTAGAAAATGAAGAGAG+TGG | 0.639422 | 5_1:+44704926 | None:intergenic |
| CGAACCACTCATAATAAGGA+GGG | 0.642917 | 5_1:+44706970 | None:intergenic |
| AGATAATTGTGTTGAACCTG+TGG | 0.656624 | 5_1:-44704363 | Msa0732350:CDS |
| GAGGATTACATGATCAAACA+TGG | 0.657463 | 5_1:-44706808 | Msa0732350:CDS |
| TGAGTGTCTGCAATATATTG+AGG | 0.665567 | 5_1:-44706827 | Msa0732350:CDS |
| TGAGTGGTTCGGGTACAACG+AGG | 0.765548 | 5_1:-44706958 | Msa0732350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTTTTTAAAA+TGG | + | chr5_1:44703693-44703712 | None:intergenic | 0.0% |
| !!! | ATATAAAAAAAATATATTTT+GGG | - | chr5_1:44703839-44703858 | Msa0732350:intron | 0.0% |
| !! | ATCAAATATTAAAAATTTGA+AGG | - | chr5_1:44701152-44701171 | Msa0732350:intron | 10.0% |
| !!! | TAACTGATTATTATTATTTT+TGG | - | chr5_1:44703012-44703031 | Msa0732350:intron | 10.0% |
| !! | AAAAATTATAAATCATACTT+TGG | - | chr5_1:44703704-44703723 | Msa0732350:three_prime_UTR | 10.0% |
| !!! | TTTTGTATTTCTAAAAAATA+CGG | + | chr5_1:44704762-44704781 | None:intergenic | 10.0% |
| !!! | ATAGTATAAACAATTTTTTT+TGG | + | chr5_1:44705274-44705293 | None:intergenic | 10.0% |
| !! | GACTAATAAAAAAAATTATT+TGG | + | chr5_1:44705440-44705459 | None:intergenic | 10.0% |
| !!! | TGTTTGATTTGATTTATAAT+TGG | - | chr5_1:44701189-44701208 | Msa0732350:intron | 15.0% |
| !!! | ATCTTTCTTTTTGAAAAATA+AGG | + | chr5_1:44701567-44701586 | None:intergenic | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | - | chr5_1:44701750-44701769 | Msa0732350:intron | 15.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | - | chr5_1:44702206-44702225 | Msa0732350:intron | 15.0% |
| !! | AAAATTATTGAACTTATCTT+CGG | + | chr5_1:44702367-44702386 | None:intergenic | 15.0% |
| !!! | TTATCTCTAGTAATTTTTTT+TGG | - | chr5_1:44702434-44702453 | Msa0732350:intron | 15.0% |
| !! | ATTATAAATTCACAAACAAA+TGG | + | chr5_1:44702754-44702773 | None:intergenic | 15.0% |
| !! | TAAATACATTGAAAATTGAA+AGG | + | chr5_1:44702977-44702996 | None:intergenic | 15.0% |
| !! | CTTGCATATATTATTTATAA+AGG | - | chr5_1:44703046-44703065 | Msa0732350:intron | 15.0% |
| !! | ATGCAAAAAAAATTAAATTC+CGG | - | chr5_1:44703651-44703670 | Msa0732350:three_prime_UTR | 15.0% |
| !!! | TTAAAATGGCTTTTTTTTTT+GGG | + | chr5_1:44703679-44703698 | None:intergenic | 15.0% |
| !!! | TTTAAAATGGCTTTTTTTTT+TGG | + | chr5_1:44703680-44703699 | None:intergenic | 15.0% |
| !! | TATTATATCTGAAAATAAAG+AGG | - | chr5_1:44704093-44704112 | Msa0732350:intron | 15.0% |
| !! | AAAAATAATATTATTGTCTG+TGG | - | chr5_1:44704251-44704270 | Msa0732350:intron | 15.0% |
| !!! | TAGTTTGTTATATCTAATAT+GGG | - | chr5_1:44704613-44704632 | Msa0732350:intron | 15.0% |
| !!! | TATAGAGTTTTATATAGTTT+TGG | + | chr5_1:44704734-44704753 | None:intergenic | 15.0% |
| !!! | TTTTAGAAATACAAAATTGT+AGG | - | chr5_1:44704766-44704785 | Msa0732350:intron | 15.0% |
| !! | TAATAATACTACTAAAATGA+TGG | - | chr5_1:44705338-44705357 | Msa0732350:intron | 15.0% |
| !! | AATAATACTACTAAAATGAT+GGG | - | chr5_1:44705339-44705358 | Msa0732350:intron | 15.0% |
| !! | TTATATTCAAGAATTCAATA+AGG | + | chr5_1:44706143-44706162 | None:intergenic | 15.0% |
| !!! | GATTTTCTTATGATAAAAAT+GGG | - | chr5_1:44706779-44706798 | Msa0732350:CDS | 15.0% |
| !! | CACATATAATAATAAACTAA+TGG | + | chr5_1:44706917-44706936 | None:intergenic | 15.0% |
| !!! | ATGTAAAATGCATTTTATAT+AGG | + | chr5_1:44707171-44707190 | None:intergenic | 15.0% |
| !! | TGTTTGAATTTGACAAAATA+GGG | - | chr5_1:44701240-44701259 | Msa0732350:intron | 20.0% |
| !!! | ATTTTTATTTTATCCCTAGA+CGG | - | chr5_1:44701394-44701413 | Msa0732350:intron | 20.0% |
| !!! | AATAAGGTATCATTAAGTTA+TGG | + | chr5_1:44701551-44701570 | None:intergenic | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | + | chr5_1:44701653-44701672 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTGACTTTTT+AGG | - | chr5_1:44701657-44701676 | Msa0732350:intron | 20.0% |
| !! | ATTGTGTAAATAATGACATA+AGG | - | chr5_1:44702002-44702021 | Msa0732350:intron | 20.0% |
| !! | TTGTGTAAATAATGACATAA+GGG | - | chr5_1:44702003-44702022 | Msa0732350:intron | 20.0% |
| !!! | AGGGCATTTATTATATTTTT+TGG | - | chr5_1:44702022-44702041 | Msa0732350:intron | 20.0% |
| !!! | GGGCATTTATTATATTTTTT+GGG | - | chr5_1:44702023-44702042 | Msa0732350:intron | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | - | chr5_1:44702205-44702224 | Msa0732350:intron | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | + | chr5_1:44702329-44702348 | None:intergenic | 20.0% |
| !!! | AGAGATAAGAGTTTTTTTTA+TGG | + | chr5_1:44702422-44702441 | None:intergenic | 20.0% |
| !! | GTGTAGAAATTAAACTAAAA+TGG | - | chr5_1:44702710-44702729 | Msa0732350:intron | 20.0% |
| !! | TATTTCGACAATCTAAAAAA+TGG | - | chr5_1:44702782-44702801 | Msa0732350:intron | 20.0% |
| !! | TTTATGTTATGTATATGTGT+AGG | - | chr5_1:44702808-44702827 | Msa0732350:intron | 20.0% |
| !! | TTATGTTATGTATATGTGTA+GGG | - | chr5_1:44702809-44702828 | Msa0732350:intron | 20.0% |
| !! | ATTATAAGGAATTTCACTTT+GGG | + | chr5_1:44702854-44702873 | None:intergenic | 20.0% |
| !! | TATTATAAGGAATTTCACTT+TGG | + | chr5_1:44702855-44702874 | None:intergenic | 20.0% |
| !! | GTGAAATTCCTTATAATAAT+AGG | - | chr5_1:44702857-44702876 | Msa0732350:intron | 20.0% |
| !! | AAATTCCTTATAATAATAGG+AGG | - | chr5_1:44702860-44702879 | Msa0732350:intron | 20.0% |
| !! | AATTCCTTATAATAATAGGA+GGG | - | chr5_1:44702861-44702880 | Msa0732350:intron | 20.0% |
| !!! | CTGATTATTATTATTTTTGG+TGG | - | chr5_1:44703015-44703034 | Msa0732350:intron | 20.0% |
| !!! | ATTATTATTATTTTTGGTGG+TGG | - | chr5_1:44703018-44703037 | Msa0732350:intron | 20.0% |
| !! | ATAAATAATATATGCAAGAG+AGG | + | chr5_1:44703044-44703063 | None:intergenic | 20.0% |
| !! | TTCTACATTAACTTTAGATA+TGG | - | chr5_1:44703232-44703251 | Msa0732350:intron | 20.0% |
| !!! | TATAGTTTTTTTACAAGAAG+CGG | - | chr5_1:44703272-44703291 | Msa0732350:intron | 20.0% |
| !!! | ATAAGCACAAATTTCTTTTA+AGG | + | chr5_1:44703438-44703457 | None:intergenic | 20.0% |
| !!! | ATTTATCTTGTTTATATGCA+AGG | - | chr5_1:44703585-44703604 | Msa0732350:three_prime_UTR | 20.0% |
| !! | ATCCCTTATAAAATTAAAAC+CGG | + | chr5_1:44703633-44703652 | None:intergenic | 20.0% |
| !! | TGCAAAAAAAATTAAATTCC+GGG | - | chr5_1:44703652-44703671 | Msa0732350:three_prime_UTR | 20.0% |
| !!! | TAAAATGGCTTTTTTTTTTG+GGG | + | chr5_1:44703678-44703697 | None:intergenic | 20.0% |
| !! | AATTATAAATCATACTTTGG+TGG | - | chr5_1:44703707-44703726 | Msa0732350:three_prime_UTR | 20.0% |
| !! | ATTATAAATCATACTTTGGT+GGG | - | chr5_1:44703708-44703727 | Msa0732350:three_prime_UTR | 20.0% |
| !! | TCATTAGAAACATATAAACA+GGG | + | chr5_1:44703921-44703940 | None:intergenic | 20.0% |
| !!! | TTGATTAAACAACCATTTTT+GGG | + | chr5_1:44703998-44704017 | None:intergenic | 20.0% |
| !!! | ATTGATTAAACAACCATTTT+TGG | + | chr5_1:44703999-44704018 | None:intergenic | 20.0% |
| !! | TCTTATCATCTGAAAAATAA+AGG | + | chr5_1:44704030-44704049 | None:intergenic | 20.0% |
| !!! | TTCCAAATATATTTTTGAAG+TGG | - | chr5_1:44704197-44704216 | Msa0732350:intron | 20.0% |
| !! | ATCCACTTCAAAAATATATT+TGG | + | chr5_1:44704202-44704221 | None:intergenic | 20.0% |
| !! | ATTAGATATAACAAACTACA+TGG | + | chr5_1:44704611-44704630 | None:intergenic | 20.0% |
| !!! | GTAGTTTGTTATATCTAATA+TGG | - | chr5_1:44704612-44704631 | Msa0732350:intron | 20.0% |
| !!! | ATTTAGTTTTCTTATCGTTA+AGG | + | chr5_1:44704792-44704811 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGCTAATATTAG+AGG | + | chr5_1:44705010-44705029 | None:intergenic | 20.0% |
| !!! | ATTAGACTTTTTGAAAACTA+TGG | - | chr5_1:44705036-44705055 | Msa0732350:CDS | 20.0% |
| !!! | TCACATACAATTTCTTTTTT+TGG | - | chr5_1:44705142-44705161 | Msa0732350:intron | 20.0% |
| !!! | TTTTTAATACTATCAATCAC+TGG | + | chr5_1:44705388-44705407 | None:intergenic | 20.0% |
| !! | ATGAAAACTTAAAATTGAGA+AGG | + | chr5_1:44705589-44705608 | None:intergenic | 20.0% |
| !!! | CAATTTTAAGTTTTCATCTT+CGG | - | chr5_1:44705592-44705611 | Msa0732350:intron | 20.0% |
| !! | AACAATTAACAATGAACTAT+TGG | + | chr5_1:44705736-44705755 | None:intergenic | 20.0% |
| !! | GATTACAAAGATAATTCTAT+TGG | - | chr5_1:44705773-44705792 | Msa0732350:intron | 20.0% |
| !! | TAAGTTCTTTGAATATATTG+TGG | + | chr5_1:44706076-44706095 | None:intergenic | 20.0% |
| !! | CAATATATTCAAAGAACTTA+TGG | - | chr5_1:44706076-44706095 | Msa0732350:intron | 20.0% |
| !! | TGAAATAATAGAAAAGATAG+AGG | - | chr5_1:44706504-44706523 | Msa0732350:intron | 20.0% |
| !! | AGTATTGTTAGAAATAATTG+TGG | - | chr5_1:44706566-44706585 | Msa0732350:intron | 20.0% |
| !! | GTATTGTTAGAAATAATTGT+GGG | - | chr5_1:44706567-44706586 | Msa0732350:intron | 20.0% |
| !!! | AAATAATTGTGGGATTTTTT+TGG | - | chr5_1:44706577-44706596 | Msa0732350:intron | 20.0% |
| !! | TTTGAATTTCGAAAATCAAA+TGG | - | chr5_1:44706666-44706685 | Msa0732350:intron | 20.0% |
| !!! | GGATTTTCTTATGATAAAAA+TGG | - | chr5_1:44706778-44706797 | Msa0732350:CDS | 20.0% |
| !!! | TATTAATTATTTTTATCGGC+TGG | - | chr5_1:44706808-44706827 | Msa0732350:CDS | 20.0% |
| !! | TTATATGTGAATTTGAATGA+AGG | - | chr5_1:44706928-44706947 | Msa0732350:intron | 20.0% |
| !! | AAAATGTTGTGATTAATATG+TGG | - | chr5_1:44707036-44707055 | Msa0732350:CDS | 20.0% |
| !!! | CATAAATCTTGGTTTTCTTA+CGG | + | chr5_1:44700730-44700749 | None:intergenic | 25.0% |
| ! | TGAAAAAACAGATACATAAG+TGG | - | chr5_1:44700784-44700803 | Msa0732350:intron | 25.0% |
| ! | TTGAATTAAGAAGCTAATGA+AGG | + | chr5_1:44701118-44701137 | None:intergenic | 25.0% |
| ! | AAAAATTTGAAGGATCATTG+TGG | - | chr5_1:44701162-44701181 | Msa0732350:intron | 25.0% |
| ! | GTGTTTGAATTTGACAAAAT+AGG | - | chr5_1:44701239-44701258 | Msa0732350:intron | 25.0% |
| ! | GTTTGAATTTGACAAAATAG+GGG | - | chr5_1:44701241-44701260 | Msa0732350:intron | 25.0% |
| ! | TTTGAATTTGACAAAATAGG+GGG | - | chr5_1:44701242-44701261 | Msa0732350:intron | 25.0% |
| ! | TAAATTTGAACATGAGACAA+CGG | - | chr5_1:44701494-44701513 | Msa0732350:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr5_1:44701615-44701634 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr5_1:44701755-44701774 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr5_1:44701682-44701701 | Msa0732350:intron | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr5_1:44701682-44701701 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr5_1:44701755-44701774 | Msa0732350:intron | 25.0% |
| !!! | TATTGGCTTACATTAATTTC+AGG | - | chr5_1:44702181-44702200 | Msa0732350:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | + | chr5_1:44702324-44702343 | None:intergenic | 25.0% |
| !!! | TCAATAATTTTTTTCGAGCT+TGG | - | chr5_1:44702376-44702395 | Msa0732350:intron | 25.0% |
| !!! | TAAGAGTTTTTTTTATGGAC+TGG | + | chr5_1:44702417-44702436 | None:intergenic | 25.0% |
| !!! | GGCTACTCTATTTTTTTTTA+GGG | + | chr5_1:44702477-44702496 | None:intergenic | 25.0% |
| ! | AAGTAAGGATATTAAGATGT+TGG | - | chr5_1:44702524-44702543 | Msa0732350:intron | 25.0% |
| !!! | ATAAGATTTCTGAAATTGCT+AGG | - | chr5_1:44702676-44702695 | Msa0732350:intron | 25.0% |
| !!! | TAAGATTTCTGAAATTGCTA+GGG | - | chr5_1:44702677-44702696 | Msa0732350:intron | 25.0% |
| ! | ATTCCTTATAATAATAGGAG+GGG | - | chr5_1:44702862-44702881 | Msa0732350:intron | 25.0% |
| ! | AAAGCATATTCTTCACAAAT+TGG | - | chr5_1:44702914-44702933 | Msa0732350:intron | 25.0% |
| ! | TAAAAAAACTATACCTACCT+GGG | + | chr5_1:44703265-44703284 | None:intergenic | 25.0% |
| ! | ATTGTGACATAGATGAAAAA+GGG | + | chr5_1:44703361-44703380 | None:intergenic | 25.0% |
| ! | TATTGTGACATAGATGAAAA+AGG | + | chr5_1:44703362-44703381 | None:intergenic | 25.0% |
| !!! | GTCCGGTTTTAATTTTATAA+GGG | - | chr5_1:44703628-44703647 | Msa0732350:three_prime_UTR | 25.0% |
| ! | TATGTAAGACACGAAAATAA+TGG | + | chr5_1:44703822-44703841 | None:intergenic | 25.0% |
| ! | CTCATTAGAAACATATAAAC+AGG | + | chr5_1:44703922-44703941 | None:intergenic | 25.0% |
| !! | GTTTATATGTTTCTAATGAG+TGG | - | chr5_1:44703922-44703941 | Msa0732350:intron | 25.0% |
| ! | TTAATCATTTCTCCCAAAAA+TGG | - | chr5_1:44703983-44704002 | Msa0732350:intron | 25.0% |
| ! | ATAGGAATATATAAGATGTG+TGG | + | chr5_1:44704225-44704244 | None:intergenic | 25.0% |
| ! | ATTAAGTCAAAAGTAAGCAT+GGG | + | chr5_1:44704707-44704726 | None:intergenic | 25.0% |
| !! | GTATTTCTAAAAAATACGGT+AGG | + | chr5_1:44704758-44704777 | None:intergenic | 25.0% |
| !! | GACAATTAACTTTCTTTTTG+TGG | - | chr5_1:44704840-44704859 | Msa0732350:intron | 25.0% |
| ! | TGCATAATATATGCAAGATT+CGG | + | chr5_1:44704883-44704902 | None:intergenic | 25.0% |
| !!! | AGTATGTAATTGCTTTTACA+AGG | + | chr5_1:44705085-44705104 | None:intergenic | 25.0% |
| !! | TGTATGTGAAGTATTAGTAT+TGG | + | chr5_1:44705131-44705150 | None:intergenic | 25.0% |
| ! | ACAATATCTCTATTGCATAT+TGG | - | chr5_1:44705706-44705725 | Msa0732350:intron | 25.0% |
| !! | ATTGGTAATTGTTCAATACA+TGG | - | chr5_1:44705791-44705810 | Msa0732350:intron | 25.0% |
| !! | TTGGTAATTGTTCAATACAT+GGG | - | chr5_1:44705792-44705811 | Msa0732350:intron | 25.0% |
| ! | CTTCAAAAAACAAAATCCTA+TGG | - | chr5_1:44705815-44705834 | Msa0732350:intron | 25.0% |
| !! | AAATCCTATGGAATTTTTCT+AGG | - | chr5_1:44705827-44705846 | Msa0732350:intron | 25.0% |
| !! | AATCCTATGGAATTTTTCTA+GGG | - | chr5_1:44705828-44705847 | Msa0732350:intron | 25.0% |
| !!! | AAGTTGAAGTATCGATATAT+AGG | + | chr5_1:44706003-44706022 | None:intergenic | 25.0% |
| ! | TATATATCGATACTTCAACT+TGG | - | chr5_1:44706002-44706021 | Msa0732350:intron | 25.0% |
| !! | ATACTGCAGAAATTTAAGAT+TGG | - | chr5_1:44706310-44706329 | Msa0732350:intron | 25.0% |
| ! | ATATTTATGTTTGCAGATCA+GGG | + | chr5_1:44706414-44706433 | None:intergenic | 25.0% |
| ! | CTATTATTTCAATACCTTCA+GGG | + | chr5_1:44706495-44706514 | None:intergenic | 25.0% |
| ! | TCTATTATTTCAATACCTTC+AGG | + | chr5_1:44706496-44706515 | None:intergenic | 25.0% |
| ! | TTAAAAGAGGTCTAAAAGAT+TGG | + | chr5_1:44706875-44706894 | None:intergenic | 25.0% |
| !! | CTTTTAGACCTCTTTTAAAT+TGG | - | chr5_1:44706877-44706896 | Msa0732350:intron | 25.0% |
| ! | AATAATAAACTAATGGCAAG+CGG | + | chr5_1:44706910-44706929 | None:intergenic | 25.0% |
| !!! | TACAAGTTTTTAGCTTCTTT+TGG | + | chr5_1:44707012-44707031 | None:intergenic | 25.0% |
| !! | ACTATAAAGGTGTGAAATAA+AGG | - | chr5_1:44707091-44707110 | Msa0732350:CDS | 25.0% |
| CAAGATTTATGTGTCTTCAT+GGG | - | chr5_1:44700739-44700758 | Msa0732350:three_prime_UTR | 30.0% | |
| CTATAAAGATCTGAATCTGA+TGG | - | chr5_1:44701214-44701233 | Msa0732350:intron | 30.0% | |
| GTTATTTATCATTCCGTCTA+GGG | + | chr5_1:44701410-44701429 | None:intergenic | 30.0% | |
| ! | TGTTATTTATCATTCCGTCT+AGG | + | chr5_1:44701411-44701430 | None:intergenic | 30.0% |
| ATGCTAATATATACTCCATC+CGG | - | chr5_1:44701593-44701612 | Msa0732350:intron | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr5_1:44701871-44701890 | Msa0732350:intron | 30.0% |
| CAATAAAATCTCAGTCTAAC+CGG | + | chr5_1:44702166-44702185 | None:intergenic | 30.0% | |
| AAATCTAAGGGTGATTATTC+TGG | - | chr5_1:44702218-44702237 | Msa0732350:intron | 30.0% | |
| !!! | CGGCTACTCTATTTTTTTTT+AGG | + | chr5_1:44702478-44702497 | None:intergenic | 30.0% |
| AAGGATATTAAGATGTTGGA+AGG | - | chr5_1:44702528-44702547 | Msa0732350:intron | 30.0% | |
| GACGTTTATATGTACATAAG+AGG | - | chr5_1:44702653-44702672 | Msa0732350:intron | 30.0% | |
| ACATTGAAAATTGAAAGGAG+AGG | + | chr5_1:44702972-44702991 | None:intergenic | 30.0% | |
| !!! | TTAGATATGGTTTTTTTCCC+AGG | - | chr5_1:44703245-44703264 | Msa0732350:intron | 30.0% |
| GTAAAAAAACTATACCTACC+TGG | + | chr5_1:44703266-44703285 | None:intergenic | 30.0% | |
| AAGAAATTTGTGCTTATTGC+AGG | - | chr5_1:44703441-44703460 | Msa0732350:intron | 30.0% | |
| !!! | CATGATTTTTTGAAGGAGTA+TGG | - | chr5_1:44703468-44703487 | Msa0732350:intron | 30.0% |
| TCTTAACAAATTCATAGGTC+CGG | - | chr5_1:44703611-44703630 | Msa0732350:three_prime_UTR | 30.0% | |
| !!! | GGTCCGGTTTTAATTTTATA+AGG | - | chr5_1:44703627-44703646 | Msa0732350:three_prime_UTR | 30.0% |
| TCTTTCTATGAAACTCATCA+TGG | + | chr5_1:44704062-44704081 | None:intergenic | 30.0% | |
| TTAACTATCAACGTTAAGCA+TGG | + | chr5_1:44704369-44704388 | None:intergenic | 30.0% | |
| GACAATAAGCGTCTTTATTA+TGG | - | chr5_1:44704477-44704496 | Msa0732350:intron | 30.0% | |
| AAAGGTCAAGCAGATAAAAT+AGG | - | chr5_1:44704525-44704544 | Msa0732350:intron | 30.0% | |
| TTAAGTCAAAAGTAAGCATG+GGG | + | chr5_1:44704706-44704725 | None:intergenic | 30.0% | |
| CATTAAGTCAAAAGTAAGCA+TGG | + | chr5_1:44704708-44704727 | None:intergenic | 30.0% | |
| CATAATATATGCAAGATTCG+GGG | + | chr5_1:44704881-44704900 | None:intergenic | 30.0% | |
| GCATAATATATGCAAGATTC+GGG | + | chr5_1:44704882-44704901 | None:intergenic | 30.0% | |
| !! | CTTTTTGAAAACTATGGTGT+TGG | - | chr5_1:44705042-44705061 | Msa0732350:intron | 30.0% |
| ATACTTCATGTGTAGTTATG+TGG | - | chr5_1:44705100-44705119 | Msa0732350:intron | 30.0% | |
| ! | AAAATGATGGGAATAAGAAG+TGG | - | chr5_1:44705351-44705370 | Msa0732350:intron | 30.0% |
| !!! | TTTTAAGTTTTCATCTTCGG+TGG | - | chr5_1:44705595-44705614 | Msa0732350:intron | 30.0% |
| ! | TGGAGTATATCTTGAGATTT+TGG | - | chr5_1:44705662-44705681 | Msa0732350:intron | 30.0% |
| !! | AATTTTTCTAGGGAACTATG+AGG | - | chr5_1:44705838-44705857 | Msa0732350:intron | 30.0% |
| AGACTAATGTAAAAAACTGC+AGG | - | chr5_1:44705868-44705887 | Msa0732350:intron | 30.0% | |
| !! | ATTTCCTTGGTAATTTTGAG+AGG | + | chr5_1:44705969-44705988 | None:intergenic | 30.0% |
| CATATTTATGTTTGCAGATC+AGG | + | chr5_1:44706415-44706434 | None:intergenic | 30.0% | |
| ! | AAAACTGACTTATCTTCTCA+TGG | + | chr5_1:44706619-44706638 | None:intergenic | 30.0% |
| ATTTCGAAAATCAAATGGAG+AGG | - | chr5_1:44706671-44706690 | Msa0732350:intron | 30.0% | |
| TTTCGAAAATCAAATGGAGA+GGG | - | chr5_1:44706672-44706691 | Msa0732350:intron | 30.0% | |
| AAATCCAGCCAATAAGAAAA+GGG | + | chr5_1:44706764-44706783 | None:intergenic | 30.0% | |
| AAAATCCAGCCAATAAGAAA+AGG | + | chr5_1:44706765-44706784 | None:intergenic | 30.0% | |
| ! | TTTTCTGATGAAGTGTATGA+AGG | - | chr5_1:44706846-44706865 | Msa0732350:CDS | 30.0% |
| AAAAAAACCTTCAGCAAAGT+TGG | + | chr5_1:44706962-44706981 | None:intergenic | 30.0% | |
| TACAAATTCAAATCAGCTCT+AGG | + | chr5_1:44706987-44707006 | None:intergenic | 30.0% | |
| TTGTGATTAATATGTGGCAT+TGG | - | chr5_1:44707042-44707061 | Msa0732350:CDS | 30.0% | |
| CCTTTATAGTATCAATCTAC+AGG | + | chr5_1:44707081-44707100 | None:intergenic | 30.0% | |
| CCTGTAGATTGATACTATAA+AGG | - | chr5_1:44707078-44707097 | Msa0732350:CDS | 30.0% | |
| CCATGAAGACACATAAATCT+TGG | + | chr5_1:44700741-44700760 | None:intergenic | 35.0% | |
| CCAAGATTTATGTGTCTTCA+TGG | - | chr5_1:44700738-44700757 | Msa0732350:three_prime_UTR | 35.0% | |
| !! | AGTTTGTCTAGAACGTTTTG+TGG | + | chr5_1:44700810-44700829 | None:intergenic | 35.0% |
| TGAGTGTCTGCAATATATTG+AGG | - | chr5_1:44701039-44701058 | Msa0732350:intron | 35.0% | |
| GAGGATTACATGATCAAACA+TGG | - | chr5_1:44701058-44701077 | Msa0732350:intron | 35.0% | |
| AATCCAAGAAGACCATCAAA+CGG | + | chr5_1:44701085-44701104 | None:intergenic | 35.0% | |
| ! | GAGAAGGTGTGTAAAAAACT+GGG | - | chr5_1:44701297-44701316 | Msa0732350:intron | 35.0% |
| ! | AAGCAAAATTTTACTCCCTC+CGG | - | chr5_1:44701626-44701645 | Msa0732350:intron | 35.0% |
| GATGTATGTGGTTCGTAATA+TGG | - | chr5_1:44701694-44701713 | Msa0732350:intron | 35.0% | |
| !! | TATCTAAAAAGTACTCCCTC+CGG | + | chr5_1:44701777-44701796 | None:intergenic | 35.0% |
| TACTTAAAACATACTCCCTC+CGG | + | chr5_1:44701893-44701912 | None:intergenic | 35.0% | |
| ! | CGGTTAGACTGAGATTTTAT+TGG | - | chr5_1:44702164-44702183 | Msa0732350:intron | 35.0% |
| !!! | GTTTTTTTATGGACTGGCAT+CGG | + | chr5_1:44702318-44702337 | None:intergenic | 35.0% |
| TTATGTATATGTGTAGGGTG+TGG | - | chr5_1:44702814-44702833 | Msa0732350:intron | 35.0% | |
| TTGCCCCTCCTATTATTATA+AGG | + | chr5_1:44702868-44702887 | None:intergenic | 35.0% | |
| TACCTAGAAAATGAAGAGAG+TGG | + | chr5_1:44702943-44702962 | None:intergenic | 35.0% | |
| AACACACGACTTTGATAGAT+GGG | + | chr5_1:44703154-44703173 | None:intergenic | 35.0% | |
| CAAAGTCGTGTGTTCAAATT+CGG | - | chr5_1:44703160-44703179 | Msa0732350:intron | 35.0% | |
| !!! | ATATGGTTTTTTTCCCAGGT+AGG | - | chr5_1:44703249-44703268 | Msa0732350:intron | 35.0% |
| !!! | AGGAGAGCATGATTTTTTGA+AGG | - | chr5_1:44703461-44703480 | Msa0732350:intron | 35.0% |
| AGATAATTGTGTTGAACCTG+TGG | - | chr5_1:44703503-44703522 | Msa0732350:intron | 35.0% | |
| GGCTGTCTTAACAAATTCAT+AGG | - | chr5_1:44703606-44703625 | Msa0732350:three_prime_UTR | 35.0% | |
| !! | TATTTTGGGCCCCAAAAAAT+TGG | - | chr5_1:44703853-44703872 | Msa0732350:intron | 35.0% |
| TAGAAACATATAAACAGGGC+CGG | + | chr5_1:44703917-44703936 | None:intergenic | 35.0% | |
| GATGAGCTAATACTTCTCTT+AGG | - | chr5_1:44704126-44704145 | Msa0732350:intron | 35.0% | |
| GTCGGATTATCATTCTCAAA+TGG | + | chr5_1:44704426-44704445 | None:intergenic | 35.0% | |
| ATGATAATCCGACACTACAA+TGG | - | chr5_1:44704433-44704452 | Msa0732350:intron | 35.0% | |
| ! | AATGGAAGTGTGTTGAATCA+AGG | - | chr5_1:44704451-44704470 | Msa0732350:intron | 35.0% |
| ! | ATGGAAGTGTGTTGAATCAA+GGG | - | chr5_1:44704452-44704471 | Msa0732350:intron | 35.0% |
| ! | AATTTTGCTCGGAGAAATAG+AGG | - | chr5_1:44704563-44704582 | Msa0732350:intron | 35.0% |
| ! | ATTTTGCTCGGAGAAATAGA+GGG | - | chr5_1:44704564-44704583 | Msa0732350:intron | 35.0% |
| TAAGTCAAAAGTAAGCATGG+GGG | + | chr5_1:44704705-44704724 | None:intergenic | 35.0% | |
| ! | AACTTTCTTTTTGTGGTGTC+CGG | - | chr5_1:44704847-44704866 | Msa0732350:intron | 35.0% |
| GGGGACAATTAACTAAACAA+CGG | - | chr5_1:44704931-44704950 | Msa0732350:CDS | 35.0% | |
| AGTCCGTCTAAATTGACATT+AGG | - | chr5_1:44705456-44705475 | Msa0732350:intron | 35.0% | |
| GTCCGTCTAAATTGACATTA+GGG | - | chr5_1:44705457-44705476 | Msa0732350:intron | 35.0% | |
| CTCCCTAATGTCAATTTAGA+CGG | + | chr5_1:44705462-44705481 | None:intergenic | 35.0% | |
| !! | CAGCTTTTGAGTATGATGTT+GGG | + | chr5_1:44705562-44705581 | None:intergenic | 35.0% |
| ! | AAAGTCTAGAGTGGTTAACT+TGG | - | chr5_1:44705624-44705643 | Msa0732350:intron | 35.0% |
| GTTCCCTAGAAAAATTCCAT+AGG | + | chr5_1:44705834-44705853 | None:intergenic | 35.0% | |
| TCCTGTTAAAGCATGACAAA+GGG | - | chr5_1:44705897-44705916 | Msa0732350:intron | 35.0% | |
| ATCTCCTCTCAAAATTACCA+AGG | - | chr5_1:44705962-44705981 | Msa0732350:intron | 35.0% | |
| !!! | GGCTAGATGTTTTATTTCCT+TGG | + | chr5_1:44705982-44706001 | None:intergenic | 35.0% |
| TAATGAAATTACCTGCGAGA+TGG | - | chr5_1:44706358-44706377 | Msa0732350:intron | 35.0% | |
| AATGAAATTACCTGCGAGAT+GGG | - | chr5_1:44706359-44706378 | Msa0732350:intron | 35.0% | |
| ! | TCTTTTCTTGACCTGTTTCA+AGG | + | chr5_1:44706385-44706404 | None:intergenic | 35.0% |
| AAGATAGAGGTCTTAAGATG+AGG | - | chr5_1:44706517-44706536 | Msa0732350:intron | 35.0% | |
| !!! | TCAGTTTTGAGATTGAAGAC+AGG | - | chr5_1:44706631-44706650 | Msa0732350:intron | 35.0% |
| !!! | CAGTTTTGAGATTGAAGACA+GGG | - | chr5_1:44706632-44706651 | Msa0732350:intron | 35.0% |
| ! | GATGCTCCTTTTCCTTGTAA+GGG | - | chr5_1:44700846-44700865 | Msa0732350:intron | 40.0% |
| GATTTGCCCTTACAAGGAAA+AGG | + | chr5_1:44700855-44700874 | None:intergenic | 40.0% | |
| ACAGAAGATTTGCCCTTACA+AGG | + | chr5_1:44700861-44700880 | None:intergenic | 40.0% | |
| AAGGGCAAATCTTCTGTTGA+AGG | - | chr5_1:44700864-44700883 | Msa0732350:intron | 40.0% | |
| CGAACCACTCATAATAAGGA+GGG | + | chr5_1:44700899-44700918 | None:intergenic | 40.0% | |
| CCTCCTTATTATGAGTGGTT+CGG | - | chr5_1:44700897-44700916 | Msa0732350:intron | 40.0% | |
| CTCCTTATTATGAGTGGTTC+GGG | - | chr5_1:44700898-44700917 | Msa0732350:intron | 40.0% | |
| TACCCGAACCACTCATAATA+AGG | + | chr5_1:44700903-44700922 | None:intergenic | 40.0% | |
| !!! | GACATGTTTTGTTGTTGTGC+AGG | - | chr5_1:44700991-44701010 | Msa0732350:intron | 40.0% |
| ATCAAACATGGACCGTTTGA+TGG | - | chr5_1:44701070-44701089 | Msa0732350:intron | 40.0% | |
| AAATAGGGGGCGATATTATC+AGG | - | chr5_1:44701255-44701274 | Msa0732350:intron | 40.0% | |
| AATAGGGGGCGATATTATCA+GGG | - | chr5_1:44701256-44701275 | Msa0732350:intron | 40.0% | |
| ! | GGAGAAGGTGTGTAAAAAAC+TGG | - | chr5_1:44701296-44701315 | Msa0732350:intron | 40.0% |
| TGCTTATAATAGTGACCGGA+TGG | + | chr5_1:44701875-44701894 | None:intergenic | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr5_1:44701759-44701778 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr5_1:44701758-44701777 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr5_1:44701758-44701777 | Msa0732350:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr5_1:44701759-44701778 | Msa0732350:intron | 40.0% |
| TTGCTTATAATAGTGACCGG+AGG | - | chr5_1:44701874-44701893 | Msa0732350:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr5_1:44701875-44701894 | Msa0732350:intron | 40.0% | |
| TCAGTCTAACCGGAAATCAT+GGG | + | chr5_1:44702156-44702175 | None:intergenic | 40.0% | |
| AAAAATAGAGTAGCCGAGCT+TGG | - | chr5_1:44702482-44702501 | Msa0732350:intron | 40.0% | |
| GCAAGCTTGTGACATAAGTA+AGG | - | chr5_1:44702509-44702528 | Msa0732350:intron | 40.0% | |
| TATGCTTTCTCTACCACTGA+AGG | + | chr5_1:44702902-44702921 | None:intergenic | 40.0% | |
| ! | TGCCACTCTCTTCATTTTCT+AGG | - | chr5_1:44702938-44702957 | Msa0732350:intron | 40.0% |
| GAACACACGACTTTGATAGA+TGG | + | chr5_1:44703155-44703174 | None:intergenic | 40.0% | |
| AGCGGAACATAAACATGAGT+TGG | - | chr5_1:44703290-44703309 | Msa0732350:intron | 40.0% | |
| GCGGAACATAAACATGAGTT+GGG | - | chr5_1:44703291-44703310 | Msa0732350:intron | 40.0% | |
| TTTGGGTGATGAATTACCAC+AGG | + | chr5_1:44703522-44703541 | None:intergenic | 40.0% | |
| GTGGTAATTCATCACCCAAA+AGG | - | chr5_1:44703522-44703541 | Msa0732350:intron | 40.0% | |
| ! | TTGGTACAGTGTGTCCTTTT+GGG | + | chr5_1:44703539-44703558 | None:intergenic | 40.0% |
| AGTAGTAGCACACCTAATCT+TGG | + | chr5_1:44703558-44703577 | None:intergenic | 40.0% | |
| ACCTCACACTCAACAAAAAG+TGG | - | chr5_1:44703738-44703757 | Msa0732350:exon | 40.0% | |
| TCCAAAGCTAACATGGATTC+AGG | - | chr5_1:44704274-44704293 | Msa0732350:intron | 40.0% | |
| ACACACTTCCATTGTAGTGT+CGG | + | chr5_1:44704444-44704463 | None:intergenic | 40.0% | |
| ! | GCTTTATTCTGTCTCCACTT+AGG | - | chr5_1:44704502-44704521 | Msa0732350:intron | 40.0% |
| ATTCTGTCTCCACTTAGGAA+AGG | - | chr5_1:44704507-44704526 | Msa0732350:intron | 40.0% | |
| ! | GCAATGCGAAGAATTTTGCT+CGG | - | chr5_1:44704552-44704571 | Msa0732350:intron | 40.0% |
| AAGTCAAAAGTAAGCATGGG+GGG | + | chr5_1:44704704-44704723 | None:intergenic | 40.0% | |
| ! | ACTTTCTTTTTGTGGTGTCC+GGG | - | chr5_1:44704848-44704867 | Msa0732350:intron | 40.0% |
| !! | TTAGAGGCATTGAGTGTTGA+TGG | + | chr5_1:44704994-44705013 | None:intergenic | 40.0% |
| GAGAATCAAACCTGAGACAT+TGG | - | chr5_1:44705479-44705498 | Msa0732350:intron | 40.0% | |
| CTTTGTATGTCCAATGTCTC+AGG | + | chr5_1:44705492-44705511 | None:intergenic | 40.0% | |
| !! | GCAGCTTTTGAGTATGATGT+TGG | + | chr5_1:44705563-44705582 | None:intergenic | 40.0% |
| TGGAAGTTGAAAGTCTAGAG+TGG | - | chr5_1:44705615-44705634 | Msa0732350:intron | 40.0% | |
| GTCCTGTTAAAGCATGACAA+AGG | - | chr5_1:44705896-44705915 | Msa0732350:intron | 40.0% | |
| ACCCTTTGTCATGCTTTAAC+AGG | + | chr5_1:44705901-44705920 | None:intergenic | 40.0% | |
| ATCATGACTAACAGAAGAGC+TGG | - | chr5_1:44706171-44706190 | Msa0732350:intron | 40.0% | |
| GCGTTTATGTTTGCAGATCA+GGG | + | chr5_1:44706467-44706486 | None:intergenic | 40.0% | |
| TGCGTTTATGTTTGCAGATC+AGG | + | chr5_1:44706468-44706487 | None:intergenic | 40.0% | |
| ! | CTCTTCTCTGCTCTCATTTT+TGG | + | chr5_1:44706711-44706730 | None:intergenic | 40.0% |
| ! | GTGGAGTTCCCTTTTCTTAT+TGG | - | chr5_1:44706753-44706772 | Msa0732350:intron | 40.0% |
| ! | AGTTCCCTTTTCTTATTGGC+TGG | - | chr5_1:44706757-44706776 | Msa0732350:intron | 40.0% |
| ! | AGACCTCTTTTAAATTGGCG+TGG | - | chr5_1:44706882-44706901 | Msa0732350:intron | 40.0% |
| ! | GACCTCTTTTAAATTGGCGT+GGG | - | chr5_1:44706883-44706902 | Msa0732350:intron | 40.0% |
| CTTCATGGGTTTCGAACAAG+TGG | - | chr5_1:44700753-44700772 | Msa0732350:intron | 45.0% | |
| ! | CGATGCTCCTTTTCCTTGTA+AGG | - | chr5_1:44700845-44700864 | Msa0732350:intron | 45.0% |
| TCGACCCTCCTTATTATGAG+TGG | - | chr5_1:44700892-44700911 | Msa0732350:intron | 45.0% | |
| CCGAACCACTCATAATAAGG+AGG | + | chr5_1:44700900-44700919 | None:intergenic | 45.0% | |
| TGGTCTTCTTGGATTCTCAC+AGG | - | chr5_1:44701090-44701109 | Msa0732350:intron | 45.0% | |
| ATAGGGGGCGATATTATCAG+GGG | - | chr5_1:44701257-44701276 | Msa0732350:intron | 45.0% | |
| GCAACGTGAACAAACGACAA+AGG | + | chr5_1:44701336-44701355 | None:intergenic | 45.0% | |
| CAGTCTAACCGGAAATCATG+GGG | + | chr5_1:44702155-44702174 | None:intergenic | 45.0% | |
| CTCAGTCTAACCGGAAATCA+TGG | + | chr5_1:44702157-44702176 | None:intergenic | 45.0% | |
| TAATAGGAGGGGCAAAGTTC+AGG | - | chr5_1:44702873-44702892 | Msa0732350:intron | 45.0% | |
| AATAGGAGGGGCAAAGTTCA+GGG | - | chr5_1:44702874-44702893 | Msa0732350:intron | 45.0% | |
| GATGGGAGACTAAACTCGAT+GGG | + | chr5_1:44703137-44703156 | None:intergenic | 45.0% | |
| AGATGGGAGACTAAACTCGA+TGG | + | chr5_1:44703138-44703157 | None:intergenic | 45.0% | |
| ! | CTTGGTACAGTGTGTCCTTT+TGG | + | chr5_1:44703540-44703559 | None:intergenic | 45.0% |
| GGACACACTGTACCAAGATT+AGG | - | chr5_1:44703543-44703562 | Msa0732350:intron | 45.0% | |
| !!! | TGGCTTTTTTTTTTGGGGCC+CGG | + | chr5_1:44703673-44703692 | None:intergenic | 45.0% |
| !!! | GCCACTTTTTGTTGAGTGTG+AGG | + | chr5_1:44703742-44703761 | None:intergenic | 45.0% |
| ! | GTCTGTACAGCTTGCTTTAG+TGG | + | chr5_1:44703769-44703788 | None:intergenic | 45.0% |
| TTTGGGCCCCAAAAAATTGG+AGG | - | chr5_1:44703856-44703875 | Msa0732350:intron | 45.0% | |
| TCTGTGGTCCAAAGCTAACA+TGG | - | chr5_1:44704267-44704286 | Msa0732350:intron | 45.0% | |
| ! | GCCTGAATCCATGTTAGCTT+TGG | + | chr5_1:44704278-44704297 | None:intergenic | 45.0% |
| AGCTAACATGGATTCAGGCT+CGG | - | chr5_1:44704279-44704298 | Msa0732350:intron | 45.0% | |
| AATAATACCCGTGCAACGCA+CGG | - | chr5_1:44704337-44704356 | Msa0732350:CDS | 45.0% | |
| TCTGCTTGACCTTTCCTAAG+TGG | + | chr5_1:44704519-44704538 | None:intergenic | 45.0% | |
| AAGATTCGGGGTTCAAATCC+CGG | + | chr5_1:44704869-44704888 | None:intergenic | 45.0% | |
| CTTGGAGAGCTTCTTCACAT+TGG | - | chr5_1:44705642-44705661 | Msa0732350:intron | 45.0% | |
| AGCTGGAGATGCTCTTTGAT+TGG | - | chr5_1:44706188-44706207 | Msa0732350:intron | 45.0% | |
| GCTGGAGATGCTCTTTGATT+GGG | - | chr5_1:44706189-44706208 | Msa0732350:intron | 45.0% | |
| CTGGAGATGCTCTTTGATTG+GGG | - | chr5_1:44706190-44706209 | Msa0732350:intron | 45.0% | |
| CATAAACGCAAACACCCTGA+AGG | - | chr5_1:44706478-44706497 | Msa0732350:intron | 45.0% | |
| TGAGGCAGAGATACATACGA+TGG | - | chr5_1:44706535-44706554 | Msa0732350:intron | 45.0% | |
| GTCCCACGCCAATTTAAAAG+AGG | + | chr5_1:44706888-44706907 | None:intergenic | 45.0% | |
| AACCTTCAGCAAAGTTGGCT+TGG | + | chr5_1:44706957-44706976 | None:intergenic | 45.0% | |
| !!! | ATTATTATTTTTTCATAATT+TGG | - | chr5_1:44700936-44700955 | Msa0732350:intron | 5.0% |
| !!! | TTATTATTTTTTCATAATTT+GGG | - | chr5_1:44700937-44700956 | Msa0732350:intron | 5.0% |
| !!! | CATATAAAAAAAATATATTT+TGG | - | chr5_1:44703838-44703857 | Msa0732350:intron | 5.0% |
| !!! | AATATTATTTTTAAAAGAAT+AGG | + | chr5_1:44704243-44704262 | None:intergenic | 5.0% |
| !!! | TACTTATTAATTATTTTTAT+CGG | - | chr5_1:44706804-44706823 | Msa0732350:CDS | 5.0% |
| ! | GGACCGTTTGATGGTCTTCT+TGG | - | chr5_1:44701079-44701098 | Msa0732350:intron | 50.0% |
| !! | ATATTATCAGGGGCACTGCC+AGG | - | chr5_1:44701267-44701286 | Msa0732350:intron | 50.0% |
| TCTAACCGGAAATCATGGGG+TGG | + | chr5_1:44702152-44702171 | None:intergenic | 50.0% | |
| CAAGCTTGCGTTACCAAGCT+CGG | + | chr5_1:44702498-44702517 | None:intergenic | 50.0% | |
| ! | AAAGTTCAGGGCACCTTCAG+TGG | - | chr5_1:44702886-44702905 | Msa0732350:intron | 50.0% |
| ! | TACAGCTTGCTTTAGTGGCG+TGG | + | chr5_1:44703764-44703783 | None:intergenic | 50.0% |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | + | chr5_1:44703865-44703884 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | + | chr5_1:44703866-44703885 | None:intergenic | 50.0% |
| !!! | ACACCGGGCCTCCAATTTTT+TGG | + | chr5_1:44703867-44703886 | None:intergenic | 50.0% |
| ATAATACCCGTGCAACGCAC+GGG | - | chr5_1:44704338-44704357 | Msa0732350:CDS | 50.0% | |
| ! | TGAGCTTGGCTCAGTTGGTA+AGG | + | chr5_1:44704910-44704929 | None:intergenic | 50.0% |
| TACCAACTGAGCCAAGCTCA+CGG | - | chr5_1:44704910-44704929 | Msa0732350:intron | 50.0% | |
| GTTAATTGTCCCCGTGAGCT+TGG | + | chr5_1:44704924-44704943 | None:intergenic | 50.0% | |
| AGAGACAGACATCTGACGTC+TGG | - | chr5_1:44706731-44706750 | Msa0732350:intron | 50.0% | |
| AGCCAAGCCAACTTTGCTGA+AGG | - | chr5_1:44706952-44706971 | Msa0732350:intron | 50.0% | |
| ! | TGAGTGGTTCGGGTACAACG+AGG | - | chr5_1:44700908-44700927 | Msa0732350:intron | 55.0% |
| ACTGCCAGGTCTTCAGGAGA+AGG | - | chr5_1:44701281-44701300 | Msa0732350:intron | 55.0% | |
| CACACCTTCTCCTGAAGACC+TGG | + | chr5_1:44701288-44701307 | None:intergenic | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | + | chr5_1:44702129-44702148 | None:intergenic | 55.0% | |
| TGGGGTGGTGCGGAAATCAT+GGG | + | chr5_1:44702137-44702156 | None:intergenic | 55.0% | |
| ATGGGGTGGTGCGGAAATCA+TGG | + | chr5_1:44702138-44702157 | None:intergenic | 55.0% | |
| GCCCCAAAAAATTGGAGGCC+CGG | - | chr5_1:44703861-44703880 | Msa0732350:intron | 55.0% | |
| ACCAACTGAGCCAAGCTCAC+GGG | - | chr5_1:44704911-44704930 | Msa0732350:intron | 55.0% | |
| TGTTTCAAGGCCCATCTCGC+AGG | + | chr5_1:44706372-44706391 | None:intergenic | 55.0% | |
| TGCGAGATGGGCCTTGAAAC+AGG | - | chr5_1:44706371-44706390 | Msa0732350:intron | 55.0% | |
| GACAGACATCTGACGTCTGG+TGG | - | chr5_1:44706734-44706753 | Msa0732350:intron | 55.0% | |
| GTGCGGAAATCATGGGGTGG+TGG | + | chr5_1:44702130-44702149 | None:intergenic | 60.0% | |
| GTGGTGCGGAAATCATGGGG+TGG | + | chr5_1:44702133-44702152 | None:intergenic | 60.0% | |
| GGGGTGGTGCGGAAATCATG+GGG | + | chr5_1:44702136-44702155 | None:intergenic | 60.0% | |
| CCGGAAATCATGGGGTGGTG+CGG | + | chr5_1:44702147-44702166 | None:intergenic | 60.0% | |
| CCGCACCACCCCATGATTTC+CGG | - | chr5_1:44702144-44702163 | Msa0732350:intron | 60.0% | |
| GAGTATCCCGTGCGTTGCAC+GGG | + | chr5_1:44704347-44704366 | None:intergenic | 60.0% | |
| ! | GGAGTATCCCGTGCGTTGCA+CGG | + | chr5_1:44704348-44704367 | None:intergenic | 60.0% |
| CCAACTGAGCCAAGCTCACG+GGG | - | chr5_1:44704912-44704931 | Msa0732350:intron | 60.0% | |
| !! | AGGGGCACTGCCAGGTCTTC+AGG | - | chr5_1:44701275-44701294 | Msa0732350:intron | 65.0% |
| TCAAGGCTGGGCGACGACAC+CGG | + | chr5_1:44703883-44703902 | None:intergenic | 65.0% | |
| GTGTCGTCGCCCAGCCTTGA+CGG | - | chr5_1:44703883-44703902 | Msa0732350:intron | 65.0% | |
| TGTCGTCGCCCAGCCTTGAC+GGG | - | chr5_1:44703884-44703903 | Msa0732350:intron | 65.0% | |
| !! | GCCCAGCCTTGACGGGCTAT+GGG | - | chr5_1:44703891-44703910 | Msa0732350:intron | 65.0% |
| GCCCATAGCCCGTCAAGGCT+GGG | + | chr5_1:44703895-44703914 | None:intergenic | 65.0% | |
| !! | AGCCTTGACGGGCTATGGGC+CGG | - | chr5_1:44703895-44703914 | Msa0732350:intron | 65.0% |
| CCCCGTGAGCTTGGCTCAGT+TGG | + | chr5_1:44704915-44704934 | None:intergenic | 65.0% | |
| CAAGGCTGGGCGACGACACC+GGG | + | chr5_1:44703882-44703901 | None:intergenic | 70.0% | |
| !! | CGCCCAGCCTTGACGGGCTA+TGG | - | chr5_1:44703890-44703909 | Msa0732350:intron | 70.0% |
| GGCCCATAGCCCGTCAAGGC+TGG | + | chr5_1:44703896-44703915 | None:intergenic | 70.0% | |
| GGCCGGCCCATAGCCCGTCA+AGG | + | chr5_1:44703900-44703919 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 44700694 | 44707194 | 44700694 | ID=Msa0732350;Name=Msa0732350 |
| chr5_1 | mRNA | 44700694 | 44707194 | 44700694 | ID=Msa0732350-mRNA-1;Parent=Msa0732350;Name=Msa0732350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=8|1|1|1|0.83|0.71|7|264|231 |
| chr5_1 | exon | 44700694 | 44700762 | 44700694 | ID=Msa0732350-mRNA-1:exon:12687;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44703558 | 44703847 | 44703558 | ID=Msa0732350-mRNA-1:exon:12686;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44704324 | 44704425 | 44704324 | ID=Msa0732350-mRNA-1:exon:12685;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44704929 | 44705058 | 44704929 | ID=Msa0732350-mRNA-1:exon:12684;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44706586 | 44706627 | 44706586 | ID=Msa0732350-mRNA-1:exon:12683;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44706777 | 44706875 | 44706777 | ID=Msa0732350-mRNA-1:exon:12682;Parent=Msa0732350-mRNA-1 |
| chr5_1 | exon | 44706959 | 44707194 | 44706959 | ID=Msa0732350-mRNA-1:exon:12681;Parent=Msa0732350-mRNA-1 |
| chr5_1 | five_prime_UTR | 44707187 | 44707194 | 44707187 | ID=Msa0732350-mRNA-1:five_prime_utr;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44706959 | 44707186 | 44706959 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44706777 | 44706875 | 44706777 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44706586 | 44706627 | 44706586 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44704929 | 44705058 | 44704929 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44704324 | 44704425 | 44704324 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | CDS | 44703753 | 44703847 | 44703753 | ID=Msa0732350-mRNA-1:cds;Parent=Msa0732350-mRNA-1 |
| chr5_1 | three_prime_UTR | 44703558 | 44703752 | 44703558 | ID=Msa0732350-mRNA-1:three_prime_utr;Parent=Msa0732350-mRNA-1 |
| chr5_1 | three_prime_UTR | 44700694 | 44700762 | 44700694 | ID=Msa0732350-mRNA-1:three_prime_utr;Parent=Msa0732350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
