Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851120 | AES98213.1 | 86.111 | 72 | 10 | 0 | 6 | 77 | 43 | 114 | 2.04e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851120 | sp|B6SGC5|CNR6_MAIZE | 57.143 | 70 | 26 | 1 | 7 | 76 | 81 | 146 | 5.59e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851120 | G7KBH8 | 86.111 | 72 | 10 | 0 | 6 | 77 | 43 | 114 | 9.76e-38 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732310 | Msa0851120 | 0.808332 | 3.262901e-50 | -8.615850e-47 |
| Msa0851120 | Msa0902410 | 0.802958 | 4.381279e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851120 | MtrunA17_Chr4g0021021 | 69.014 | 71 | 22 | 0 | 6 | 76 | 46 | 116 | 4.05e-29 | 105 |
| Msa0851120 | MtrunA17_Chr3g0079081 | 63.380 | 71 | 23 | 1 | 6 | 76 | 74 | 141 | 4.44e-23 | 90.9 |
| Msa0851120 | MtrunA17_Chr7g0231961 | 50.000 | 70 | 31 | 1 | 7 | 76 | 11 | 76 | 1.26e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851120 | AT2G45010.2 | 54.930 | 71 | 27 | 2 | 7 | 76 | 32 | 98 | 1.26e-20 | 84.0 |
| Msa0851120 | AT2G45010.1 | 54.930 | 71 | 27 | 2 | 7 | 76 | 78 | 144 | 1.93e-20 | 84.3 |
| Msa0851120 | AT5G51400.1 | 47.143 | 70 | 32 | 2 | 8 | 76 | 79 | 144 | 4.26e-12 | 62.0 |
Find 36 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTCCTTGCGTACTATT+TGG | 0.192370 | 5_4:-41152468 | Msa0851120:CDS |
| TGTCGAAGGTTGCATTTCTT+TGG | 0.228315 | 5_4:-41152379 | Msa0851120:CDS |
| ACAAAAGAAATATCACTTAA+AGG | 0.255348 | 5_4:-41152226 | Msa0851120:intron |
| GTGCATGTTGTGTGCATTGC+TGG | 0.319796 | 5_4:-41152096 | Msa0851120:CDS |
| GTCGAAGGTTGCATTTCTTT+GGG | 0.327155 | 5_4:-41152378 | Msa0851120:CDS |
| GCTGCAGCTGTCTTAATTCC+TGG | 0.368615 | 5_4:-41152342 | Msa0851120:CDS |
| GGAGATGAAGGGACGACTTT+CGG | 0.392859 | 5_4:-41152041 | Msa0851120:CDS |
| ACATGCTCATTGTTGTTAGT+AGG | 0.397626 | 5_4:+41151962 | None:intergenic |
| AGTAGGCTTCATCTCTTGAA+TGG | 0.408840 | 5_4:+41151979 | None:intergenic |
| GGGTTTATATTTCTCGTGGC+TGG | 0.430171 | 5_4:-41152286 | Msa0851120:intron |
| GTGTGCATTGCTGGTTGCAC+TGG | 0.444515 | 5_4:-41152087 | Msa0851120:CDS |
| GGCATTAATCCATGGATGTC+AGG | 0.444733 | 5_4:-41152321 | Msa0851120:CDS |
| GTAGGCTTCATCTCTTGAAT+GGG | 0.472668 | 5_4:+41151980 | None:intergenic |
| TCAAGAGCACAGGGAGATGA+AGG | 0.472835 | 5_4:-41152053 | Msa0851120:CDS |
| GCAATTACACTGGTCAAGTT+CGG | 0.476213 | 5_4:-41152257 | Msa0851120:CDS |
| GCTTGAGGGAAGACACTCAT+TGG | 0.480198 | 5_4:-41152431 | Msa0851120:CDS |
| TTCATCTCTTGAATGGGAGG+AGG | 0.490510 | 5_4:+41151986 | None:intergenic |
| TCATCTCTTGAATGGGAGGA+GGG | 0.507184 | 5_4:+41151987 | None:intergenic |
| CTCCCTGTGCTCTTGACACA+AGG | 0.532100 | 5_4:+41152060 | None:intergenic |
| TAATTCCTGGCATTAATCCA+TGG | 0.537201 | 5_4:-41152329 | Msa0851120:CDS |
| GTGCCTTGTGTCAAGAGCAC+AGG | 0.538053 | 5_4:-41152063 | Msa0851120:CDS |
| GACATCCATGGATTAATGCC+AGG | 0.543556 | 5_4:+41152324 | None:intergenic |
| ACGCAATGTACAAAGCTTGA+GGG | 0.554563 | 5_4:-41152445 | Msa0851120:CDS |
| GACGCAATGTACAAAGCTTG+AGG | 0.564085 | 5_4:-41152446 | Msa0851120:CDS |
| GTGAGGGTTTATATTTCTCG+TGG | 0.568607 | 5_4:-41152290 | Msa0851120:CDS |
| ATGTCAGGTGTCATTTGTGA+GGG | 0.571336 | 5_4:-41152306 | Msa0851120:CDS |
| GATGTCAGGTGTCATTTGTG+AGG | 0.575167 | 5_4:-41152307 | Msa0851120:CDS |
| GGCTTCATCTCTTGAATGGG+AGG | 0.588689 | 5_4:+41151983 | None:intergenic |
| CAAATGACACCTGACATCCA+TGG | 0.596465 | 5_4:+41152312 | None:intergenic |
| TGCCTTGTGTCAAGAGCACA+GGG | 0.601598 | 5_4:-41152062 | Msa0851120:CDS |
| GGGAAGACACTCATTGGACT+AGG | 0.613183 | 5_4:-41152425 | Msa0851120:CDS |
| TTGCGTCCAAATAGTACGCA+AGG | 0.632285 | 5_4:+41152462 | None:intergenic |
| AAAATGGCATGACAAATGCA+TGG | 0.642333 | 5_4:+41152402 | None:intergenic |
| TGCACACAACATGCACAACA+AGG | 0.644480 | 5_4:+41152103 | None:intergenic |
| CAAGAGCACAGGGAGATGAA+GGG | 0.660978 | 5_4:-41152052 | Msa0851120:CDS |
| CTGGTGTGTAGCAATTACAC+TGG | 0.674179 | 5_4:-41152267 | Msa0851120:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTATCTAAAGTAAT+AGG | + | chr5_4:41152216-41152235 | None:intergenic | 10.0% |
| !! | ATAAATATTGAATTCAATTA+TGG | - | chr5_4:41152575-41152594 | Msa0851120:intron | 10.0% |
| !!! | CAAAATAATTAGTAAGATTT+TGG | - | chr5_4:41152239-41152258 | Msa0851120:CDS | 15.0% |
| !!! | AACTTTCTTTTTAAAAGAAA+TGG | + | chr5_4:41152863-41152882 | None:intergenic | 15.0% |
| !!! | TATATCCAATTATTTTTAGT+TGG | - | chr5_4:41153426-41153445 | Msa0851120:intron | 15.0% |
| !! | TATTATATAACTAACAACAA+AGG | + | chr5_4:41153454-41153473 | None:intergenic | 15.0% |
| !!! | TAGTCAAAATTTAATGTTTT+TGG | + | chr5_4:41153728-41153747 | None:intergenic | 15.0% |
| !!! | TTCAAACTAGTTTAAATTAA+AGG | - | chr5_4:41153765-41153784 | Msa0851120:intron | 15.0% |
| !! | AAATCAAGAAATCTAAAAAG+AGG | + | chr5_4:41152536-41152555 | None:intergenic | 20.0% |
| !!! | ATTTCTTGATTTGTGTTTTT+AGG | - | chr5_4:41152544-41152563 | Msa0851120:intron | 20.0% |
| !!! | AATCTGAGTAAGTTTTATTA+TGG | - | chr5_4:41152714-41152733 | Msa0851120:intron | 20.0% |
| !!! | ATCTGAGTAAGTTTTATTAT+GGG | - | chr5_4:41152715-41152734 | Msa0851120:intron | 20.0% |
| !!! | AATATTTTTGTTATACTCCT+TGG | - | chr5_4:41152946-41152965 | Msa0851120:intron | 20.0% |
| !!! | AAAATTTTGATGTTCAATCA+AGG | - | chr5_4:41153093-41153112 | Msa0851120:intron | 20.0% |
| !!! | TACTTAATGCATTTAGATTT+TGG | - | chr5_4:41153217-41153236 | Msa0851120:intron | 20.0% |
| !!! | ATTTTTTTACTGTTAACCAT+TGG | + | chr5_4:41153610-41153629 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTTCGATATAG+AGG | - | chr5_4:41153835-41153854 | Msa0851120:intron | 20.0% |
| !!! | ATTTGTTGTACTATCTTTTT+GGG | + | chr5_4:41154044-41154063 | None:intergenic | 20.0% |
| !!! | TATTTGTTGTACTATCTTTT+TGG | + | chr5_4:41154045-41154064 | None:intergenic | 20.0% |
| !!! | CTTGGAATTTTTTGTATTAT+TGG | + | chr5_4:41154107-41154126 | None:intergenic | 20.0% |
| !! | CAATAATACAAAAAATTCCA+AGG | - | chr5_4:41154105-41154124 | Msa0851120:intron | 20.0% |
| !! | AAAAAATTCCAAGGAATATA+AGG | - | chr5_4:41154114-41154133 | Msa0851120:intron | 20.0% |
| !! | AAAAATTCCAAGGAATATAA+GGG | - | chr5_4:41154115-41154134 | Msa0851120:intron | 20.0% |
| !! | AGCAAATTGTTGAAAATATT+TGG | - | chr5_4:41154148-41154167 | Msa0851120:intron | 20.0% |
| !! | GAAAAATGAAAGAATGTAAA+AGG | + | chr5_4:41154230-41154249 | None:intergenic | 20.0% |
| !!! | TAAGTGATATTTCTTTTGTA+AGG | + | chr5_4:41154512-41154531 | None:intergenic | 20.0% |
| !! | ACAAAAGAAATATCACTTAA+AGG | - | chr5_4:41154513-41154532 | Msa0851120:intron | 20.0% |
| ! | TAATTGTCTTAATCTTCACT+TGG | + | chr5_4:41152006-41152025 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTCAACCATGAT+TGG | - | chr5_4:41152138-41152157 | Msa0851120:intron | 25.0% |
| ! | CATTGCCAAATTATAAAGTT+AGG | + | chr5_4:41152170-41152189 | None:intergenic | 25.0% |
| ! | AAGATAAGATCAAGTATCTA+AGG | + | chr5_4:41152510-41152529 | None:intergenic | 25.0% |
| ! | TCTTCTTAAACCTTTATCTT+AGG | - | chr5_4:41152608-41152627 | Msa0851120:intron | 25.0% |
| !! | TGTCTTAAAAACACTTGTTA+TGG | + | chr5_4:41152827-41152846 | None:intergenic | 25.0% |
| ! | AGGTACCAACTAAAAATAAT+TGG | + | chr5_4:41153434-41153453 | None:intergenic | 25.0% |
| ! | TTAGACAACTAATCAAATGT+TGG | + | chr5_4:41153700-41153719 | None:intergenic | 25.0% |
| ! | TTAGTGAATAAGACAACTTT+AGG | - | chr5_4:41153983-41154002 | Msa0851120:intron | 25.0% |
| ! | AAAATTCCAAGGAATATAAG+GGG | - | chr5_4:41154116-41154135 | Msa0851120:intron | 25.0% |
| TGGCTTCATCAAAATCATTA+AGG | + | chr5_4:41152060-41152079 | None:intergenic | 30.0% | |
| !! | CCTATTCTTTTGAAAGAACA+TGG | + | chr5_4:41152080-41152099 | None:intergenic | 30.0% |
| CCATGTTCTTTCAAAAGAAT+AGG | - | chr5_4:41152077-41152096 | Msa0851120:CDS | 30.0% | |
| !! | ATTTTTCAACCATGATTGGT+TGG | - | chr5_4:41152142-41152161 | Msa0851120:intron | 30.0% |
| TGGCACCTAACTTTATAATT+TGG | - | chr5_4:41152162-41152181 | Msa0851120:intron | 30.0% | |
| ATAAGATCAAGTATCTAAGG+TGG | + | chr5_4:41152507-41152526 | None:intergenic | 30.0% | |
| TCAAGAAATCTAAAAAGAGG+AGG | + | chr5_4:41152533-41152552 | None:intergenic | 30.0% | |
| TTTACGTGAACCTAAGATAA+AGG | + | chr5_4:41152621-41152640 | None:intergenic | 30.0% | |
| !! | TTTTTGTTATACTCCTTGGA+AGG | - | chr5_4:41152950-41152969 | Msa0851120:intron | 30.0% |
| ! | ATTATTAAGCCCTTTTCCAA+TGG | - | chr5_4:41153591-41153610 | Msa0851120:intron | 30.0% |
| TACTGTTAACCATTGGAAAA+GGG | + | chr5_4:41153603-41153622 | None:intergenic | 30.0% | |
| TTACTGTTAACCATTGGAAA+AGG | + | chr5_4:41153604-41153623 | None:intergenic | 30.0% | |
| AGAACCAATTATACACACAA+AGG | - | chr5_4:41153638-41153657 | Msa0851120:intron | 30.0% | |
| CAAATCAAGTACAATTTGAG+AGG | + | chr5_4:41154197-41154216 | None:intergenic | 30.0% | |
| !! | ATTCTTTCATTTTTCACTGC+AGG | - | chr5_4:41154235-41154254 | Msa0851120:intron | 30.0% |
| ! | ATATCACTTAAAGGTACACA+AGG | - | chr5_4:41154522-41154541 | Msa0851120:intron | 30.0% |
| TGTATAAATGTCGTTCTACA+TGG | + | chr5_4:41154570-41154589 | None:intergenic | 30.0% | |
| AATTCTGCAATCATAAACAG+AGG | + | chr5_4:41154611-41154630 | None:intergenic | 30.0% | |
| !!! | TAAGATTTTGGAACGTGCAA+GGG | - | chr5_4:41152251-41152270 | Msa0851120:CDS | 35.0% |
| ATGGTTGTATGATGATCGAA+CGG | + | chr5_4:41152376-41152395 | None:intergenic | 35.0% | |
| !! | TTCTAAGGATTTTCCTTCCA+AGG | + | chr5_4:41152966-41152985 | None:intergenic | 35.0% |
| TTGGAAGGAAAATCCTTAGA+AGG | - | chr5_4:41152965-41152984 | Msa0851120:intron | 35.0% | |
| ATACATGTTTGTGCCTTCTA+AGG | + | chr5_4:41152981-41153000 | None:intergenic | 35.0% | |
| CACAAAAGACTATCACAAGT+TGG | - | chr5_4:41153036-41153055 | Msa0851120:intron | 35.0% | |
| TTCGCCTTTGTGTGTATAAT+TGG | + | chr5_4:41153645-41153664 | None:intergenic | 35.0% | |
| TCTACACCAATTTGTATGAG+TGG | - | chr5_4:41153944-41153963 | Msa0851120:intron | 35.0% | |
| CTACACCAATTTGTATGAGT+GGG | - | chr5_4:41153945-41153964 | Msa0851120:intron | 35.0% | |
| ACATCATCAATGTAGGCTAT+TGG | + | chr5_4:41154081-41154100 | None:intergenic | 35.0% | |
| TTGGCTAACATCATCAATGT+AGG | + | chr5_4:41154088-41154107 | None:intergenic | 35.0% | |
| AAAATGGCATGACAAATGCA+TGG | + | chr5_4:41154340-41154359 | None:intergenic | 35.0% | |
| AATGCAACCTTCGACAAAAA+TGG | + | chr5_4:41154356-41154375 | None:intergenic | 35.0% | |
| TAATTCCTGGCATTAATCCA+TGG | - | chr5_4:41154410-41154429 | Msa0851120:intron | 35.0% | |
| GACATAATTTAACCCTTCTG+TGG | + | chr5_4:41154548-41154567 | None:intergenic | 35.0% | |
| !!! | GTAAGATTTTGGAACGTGCA+AGG | - | chr5_4:41152250-41152269 | Msa0851120:CDS | 40.0% |
| CAATGTGCGTCATTTCTCAA+GGG | - | chr5_4:41152277-41152296 | Msa0851120:intron | 40.0% | |
| ACGATGGGTCATGCTTATAT+AGG | + | chr5_4:41152446-41152465 | None:intergenic | 40.0% | |
| TCGTACCTTTAGTTGACGAT+GGG | + | chr5_4:41152461-41152480 | None:intergenic | 40.0% | |
| ATCGTACCTTTAGTTGACGA+TGG | + | chr5_4:41152462-41152481 | None:intergenic | 40.0% | |
| GGATATGAAGACTTTCACGT+TGG | - | chr5_4:41153114-41153133 | Msa0851120:intron | 40.0% | |
| TACAGAGCATGCATGAGAAT+GGG | - | chr5_4:41153308-41153327 | Msa0851120:intron | 40.0% | |
| TAGACACGAATCATGCACAA+TGG | - | chr5_4:41153472-41153491 | Msa0851120:intron | 40.0% | |
| TGCTACCCACTCATACAAAT+TGG | + | chr5_4:41153953-41153972 | None:intergenic | 40.0% | |
| CTAGTTCCCCTTATATTCCT+TGG | + | chr5_4:41154125-41154144 | None:intergenic | 40.0% | |
| ACGCAATGTACAAAGCTTGA+GGG | - | chr5_4:41154294-41154313 | Msa0851120:intron | 40.0% | |
| !!! | TGTCATGCCATTTTTGTCGA+AGG | - | chr5_4:41154346-41154365 | Msa0851120:intron | 40.0% |
| TGTCGAAGGTTGCATTTCTT+TGG | - | chr5_4:41154360-41154379 | Msa0851120:intron | 40.0% | |
| GTCGAAGGTTGCATTTCTTT+GGG | - | chr5_4:41154361-41154380 | Msa0851120:intron | 40.0% | |
| !! | ATGTCAGGTGTCATTTGTGA+GGG | - | chr5_4:41154433-41154452 | Msa0851120:intron | 40.0% |
| GTGAGGGTTTATATTTCTCG+TGG | - | chr5_4:41154449-41154468 | Msa0851120:intron | 40.0% | |
| GCAATTACACTGGTCAAGTT+CGG | - | chr5_4:41154482-41154501 | Msa0851120:intron | 40.0% | |
| GTAGGCTTCATCTCTTGAAT+GGG | + | chr5_4:41154762-41154781 | None:intergenic | 40.0% | |
| AGTAGGCTTCATCTCTTGAA+TGG | + | chr5_4:41154763-41154782 | None:intergenic | 40.0% | |
| AGTTAGGTGCCAACCAATCA+TGG | + | chr5_4:41152154-41152173 | None:intergenic | 45.0% | |
| CCTTGAGAAATGACGCACAT+TGG | + | chr5_4:41152279-41152298 | None:intergenic | 45.0% | |
| CCAATGTGCGTCATTTCTCA+AGG | - | chr5_4:41152276-41152295 | Msa0851120:intron | 45.0% | |
| !! | TGTACGTCTTCTAGTCTTGC+AGG | + | chr5_4:41152312-41152331 | None:intergenic | 45.0% |
| CCAACGTGAGATGCAAAAGA+TGG | + | chr5_4:41152395-41152414 | None:intergenic | 45.0% | |
| ! | CCATCTTTTGCATCTCACGT+TGG | - | chr5_4:41152392-41152411 | Msa0851120:CDS | 45.0% |
| ATCTCACGTTGGATACAACG+AGG | - | chr5_4:41152403-41152422 | Msa0851120:CDS | 45.0% | |
| CATGACCCATCGTCAACTAA+AGG | - | chr5_4:41152453-41152472 | Msa0851120:CDS | 45.0% | |
| ACACTAGCAAGTGCACGTAA+AGG | - | chr5_4:41152679-41152698 | Msa0851120:intron | 45.0% | |
| CATTCTCATGCATGCTCTGT+AGG | + | chr5_4:41153309-41153328 | None:intergenic | 45.0% | |
| CTACAGAGCATGCATGAGAA+TGG | - | chr5_4:41153307-41153326 | Msa0851120:intron | 45.0% | |
| GCATGCAACTACTTGCTTGT+TGG | - | chr5_4:41153339-41153358 | Msa0851120:intron | 45.0% | |
| ! | TTTTTCACTGCAGGCTTGAC+TGG | - | chr5_4:41154244-41154263 | Msa0851120:intron | 45.0% |
| CTCTGTCCTTGCGTACTATT+TGG | - | chr5_4:41154271-41154290 | Msa0851120:intron | 45.0% | |
| TTGCGTCCAAATAGTACGCA+AGG | + | chr5_4:41154280-41154299 | None:intergenic | 45.0% | |
| GACGCAATGTACAAAGCTTG+AGG | - | chr5_4:41154293-41154312 | Msa0851120:intron | 45.0% | |
| ! | GACATCCATGGATTAATGCC+AGG | + | chr5_4:41154418-41154437 | None:intergenic | 45.0% |
| GGCATTAATCCATGGATGTC+AGG | - | chr5_4:41154418-41154437 | Msa0851120:intron | 45.0% | |
| CAAATGACACCTGACATCCA+TGG | + | chr5_4:41154430-41154449 | None:intergenic | 45.0% | |
| !! | GATGTCAGGTGTCATTTGTG+AGG | - | chr5_4:41154432-41154451 | Msa0851120:intron | 45.0% |
| GGGTTTATATTTCTCGTGGC+TGG | - | chr5_4:41154453-41154472 | Msa0851120:intron | 45.0% | |
| CTGGTGTGTAGCAATTACAC+TGG | - | chr5_4:41154472-41154491 | Msa0851120:intron | 45.0% | |
| TGCACACAACATGCACAACA+AGG | + | chr5_4:41154639-41154658 | None:intergenic | 45.0% | |
| TCATCTCTTGAATGGGAGGA+GGG | + | chr5_4:41154755-41154774 | None:intergenic | 45.0% | |
| TTCATCTCTTGAATGGGAGG+AGG | + | chr5_4:41154756-41154775 | None:intergenic | 45.0% | |
| !! | AATAAAAGAAATTAATTAAT+TGG | + | chr5_4:41153821-41153840 | None:intergenic | 5.0% |
| TCGCGTGTTTGCTCTTGCAA+TGG | - | chr5_4:41153264-41153283 | Msa0851120:intron | 50.0% | |
| GCTTGAGGGAAGACACTCAT+TGG | - | chr5_4:41154308-41154327 | Msa0851120:intron | 50.0% | |
| GGGAAGACACTCATTGGACT+AGG | - | chr5_4:41154314-41154333 | Msa0851120:intron | 50.0% | |
| GCTGCAGCTGTCTTAATTCC+TGG | - | chr5_4:41154397-41154416 | Msa0851120:intron | 50.0% | |
| AAGGTACACAAGGCCACAGA+AGG | - | chr5_4:41154532-41154551 | Msa0851120:intron | 50.0% | |
| AGGTACACAAGGCCACAGAA+GGG | - | chr5_4:41154533-41154552 | Msa0851120:intron | 50.0% | |
| GTGCATGTTGTGTGCATTGC+TGG | - | chr5_4:41154643-41154662 | Msa0851120:intron | 50.0% | |
| ! | TGCCTTGTGTCAAGAGCACA+GGG | - | chr5_4:41154677-41154696 | Msa0851120:intron | 50.0% |
| ! | TCAAGAGCACAGGGAGATGA+AGG | - | chr5_4:41154686-41154705 | Msa0851120:intron | 50.0% |
| ! | CAAGAGCACAGGGAGATGAA+GGG | - | chr5_4:41154687-41154706 | Msa0851120:intron | 50.0% |
| GGAGATGAAGGGACGACTTT+CGG | - | chr5_4:41154698-41154717 | Msa0851120:intron | 50.0% | |
| GGCTTCATCTCTTGAATGGG+AGG | + | chr5_4:41154759-41154778 | None:intergenic | 50.0% | |
| TGGTGCACTCTTGTGTGGTG+AGG | + | chr5_4:41152340-41152359 | None:intergenic | 55.0% | |
| AGAGGTGGTGCACTCTTGTG+TGG | + | chr5_4:41152345-41152364 | None:intergenic | 55.0% | |
| ACTCACTGCGTACGAGTACG+AGG | - | chr5_4:41154016-41154035 | Msa0851120:intron | 55.0% | |
| ! | GTGTGCATTGCTGGTTGCAC+TGG | - | chr5_4:41154652-41154671 | Msa0851120:intron | 55.0% |
| ! | GTGCCTTGTGTCAAGAGCAC+AGG | - | chr5_4:41154676-41154695 | Msa0851120:intron | 55.0% |
| CTCCCTGTGCTCTTGACACA+AGG | + | chr5_4:41154682-41154701 | None:intergenic | 55.0% | |
| AGAGTGCACCACCTCTGCTC+TGG | - | chr5_4:41152349-41152368 | Msa0851120:CDS | 60.0% | |
| GATCGAACGGTCCAGAGCAG+AGG | + | chr5_4:41152363-41152382 | None:intergenic | 60.0% | |
| CGAACGGTCCAGAGCAGAGG+TGG | + | chr5_4:41152360-41152379 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41151977 | 41154784 | 41151977 | ID=Msa0851120;Name=Msa0851120 |
| chr5_4 | mRNA | 41151977 | 41154784 | 41151977 | ID=Msa0851120-mRNA-1;Parent=Msa0851120;Name=Msa0851120-mRNA-1;_AED=0.10;_eAED=0.54;_QI=0|0|0|0.6|0|0.2|5|0|146 |
| chr5_4 | exon | 41154779 | 41154784 | 41154779 | ID=Msa0851120-mRNA-1:exon:12972;Parent=Msa0851120-mRNA-1 |
| chr5_4 | exon | 41153366 | 41153372 | 41153366 | ID=Msa0851120-mRNA-1:exon:12971;Parent=Msa0851120-mRNA-1 |
| chr5_4 | exon | 41152287 | 41152504 | 41152287 | ID=Msa0851120-mRNA-1:exon:12970;Parent=Msa0851120-mRNA-1 |
| chr5_4 | exon | 41152227 | 41152278 | 41152227 | ID=Msa0851120-mRNA-1:exon:12969;Parent=Msa0851120-mRNA-1 |
| chr5_4 | exon | 41151977 | 41152134 | 41151977 | ID=Msa0851120-mRNA-1:exon:12968;Parent=Msa0851120-mRNA-1 |
| chr5_4 | CDS | 41154779 | 41154784 | 41154779 | ID=Msa0851120-mRNA-1:cds;Parent=Msa0851120-mRNA-1 |
| chr5_4 | CDS | 41153366 | 41153372 | 41153366 | ID=Msa0851120-mRNA-1:cds;Parent=Msa0851120-mRNA-1 |
| chr5_4 | CDS | 41152287 | 41152504 | 41152287 | ID=Msa0851120-mRNA-1:cds;Parent=Msa0851120-mRNA-1 |
| chr5_4 | CDS | 41152227 | 41152278 | 41152227 | ID=Msa0851120-mRNA-1:cds;Parent=Msa0851120-mRNA-1 |
| chr5_4 | CDS | 41151977 | 41152134 | 41151977 | ID=Msa0851120-mRNA-1:cds;Parent=Msa0851120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
