Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851520 | XP_024639340.1 | 93.103 | 464 | 20 | 2 | 1 | 464 | 1 | 452 | 0.0 | 877 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851520 | sp|Q9S7V4|HA22A_ARATH | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 6.78e-16 | 79.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851520 | A0A396HSG0 | 93.103 | 464 | 20 | 2 | 1 | 464 | 1 | 452 | 0.0 | 877 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0773750 | Msa0851520 | 0.863291 | 2.763702e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851520 | MtrunA17_Chr5g0427761 | 93.103 | 464 | 20 | 2 | 1 | 464 | 1 | 452 | 0.0 | 877 |
Msa0851520 | MtrunA17_Chr2g0281001 | 34.132 | 167 | 105 | 3 | 303 | 464 | 35 | 201 | 1.23e-20 | 89.7 |
Msa0851520 | MtrunA17_Chr4g0049651 | 23.019 | 265 | 173 | 8 | 14 | 249 | 12 | 274 | 1.42e-16 | 82.0 |
Msa0851520 | MtrunA17_Chr4g0060581 | 32.323 | 99 | 67 | 0 | 10 | 108 | 13 | 111 | 1.78e-15 | 74.3 |
Msa0851520 | MtrunA17_Chr3g0097141 | 34.737 | 95 | 62 | 0 | 12 | 106 | 7 | 101 | 3.02e-14 | 70.5 |
Msa0851520 | MtrunA17_Chr6g0480701 | 30.120 | 166 | 113 | 2 | 302 | 464 | 623 | 788 | 3.62e-14 | 75.1 |
Msa0851520 | MtrunA17_Chr5g0443431 | 36.471 | 85 | 54 | 0 | 22 | 106 | 17 | 101 | 7.19e-12 | 63.5 |
Msa0851520 | MtrunA17_Chr5g0416561 | 30.476 | 105 | 73 | 0 | 1 | 105 | 58 | 162 | 7.26e-12 | 65.5 |
Msa0851520 | MtrunA17_Chr3g0132031 | 29.787 | 94 | 66 | 0 | 12 | 105 | 7 | 100 | 3.36e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0851520 | AT1G74520.1 | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 6.89e-17 | 79.0 |
Msa0851520 | AT1G74520.2 | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 6.89e-17 | 79.0 |
Msa0851520 | AT1G69700.1 | 28.369 | 141 | 97 | 1 | 11 | 151 | 13 | 149 | 2.97e-15 | 74.3 |
Msa0851520 | AT2G42820.1 | 31.959 | 97 | 66 | 0 | 10 | 106 | 5 | 101 | 5.59e-13 | 67.0 |
Find 97 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGATATCTCAAACTTATT+TGG | 0.127608 | 5_4:+41906208 | Msa0851520:three_prime_UTR |
ACTCATGGCGCGAAACTAAT+AGG | 0.204376 | 5_4:+41905870 | Msa0851520:CDS |
TTTCCATTCACACCATATTA+TGG | 0.214195 | 5_4:-41905513 | None:intergenic |
GATTCAGAATATTTGCAATT+TGG | 0.215007 | 5_4:-41905478 | None:intergenic |
AGAGGCCTTGTTCTCTCTTT+AGG | 0.218594 | 5_4:+41905701 | Msa0851520:CDS |
TTCACACAGGTTTCAGCTTT+TGG | 0.219860 | 5_4:-41905800 | None:intergenic |
CTATTGTTAATACCTTATTT+TGG | 0.243172 | 5_4:+41904523 | Msa0851520:CDS |
CTTGTTCTCTCTTTAGGTCT+TGG | 0.247801 | 5_4:+41905707 | Msa0851520:CDS |
TCTATCTTTCTTTACCATTA+AGG | 0.249037 | 5_4:+41902552 | Msa0851520:five_prime_UTR |
GTGGTCTGCTTCGTGATTAT+CGG | 0.253798 | 5_4:+41905603 | Msa0851520:CDS |
TGGTGGAACTTTGGGCTATA+TGG | 0.256656 | 5_4:+41905678 | Msa0851520:CDS |
TACTTTCTTGGTGGAACTTT+GGG | 0.281464 | 5_4:+41905670 | Msa0851520:CDS |
ATGTCAACTTAACCACTAAA+TGG | 0.290537 | 5_4:-41906108 | None:intergenic |
GTCTTGGGATAAAATCAATA+TGG | 0.303390 | 5_4:+41905723 | Msa0851520:CDS |
TTCGAGACAAATGCGCAAAT+TGG | 0.310319 | 5_4:-41905632 | None:intergenic |
TTGTTCTCTCTTTAGGTCTT+GGG | 0.332936 | 5_4:+41905708 | Msa0851520:CDS |
AATAAAGAAACAGCTGGTTT+TGG | 0.354908 | 5_4:+41905581 | Msa0851520:CDS |
ATGTTATAGCTTCCATTTAG+TGG | 0.362109 | 5_4:+41906096 | Msa0851520:three_prime_UTR |
GTTGCAGATATGTTTCTATT+CGG | 0.367407 | 5_4:+41902941 | Msa0851520:intron |
TTAATTAAACGCTACTGTAC+TGG | 0.372209 | 5_4:+41904571 | Msa0851520:CDS |
AATTTGCAGTGTTATTTACT+TGG | 0.376792 | 5_4:+41903049 | Msa0851520:CDS |
ATTAAGAGCTTGTAGATGTA+TGG | 0.379499 | 5_4:-41904553 | None:intergenic |
AAGCACAACTCCATTCCTTC+TGG | 0.379728 | 5_4:-41905283 | None:intergenic |
CATATTATGGATCTAGAAAC+TGG | 0.383191 | 5_4:-41905500 | None:intergenic |
CAAAATAAGGTATTAACAAT+AGG | 0.384113 | 5_4:-41904522 | None:intergenic |
TCCTCAAGGAGATACTTTCT+TGG | 0.388568 | 5_4:+41905658 | Msa0851520:CDS |
AATCACTCACCATCCTTTCC+TGG | 0.389151 | 5_4:+41902676 | Msa0851520:CDS |
TTTCTTTACCATTAAGGCTT+CGG | 0.389378 | 5_4:+41902558 | Msa0851520:five_prime_UTR |
ATACTTTCTTGGTGGAACTT+TGG | 0.389611 | 5_4:+41905669 | Msa0851520:CDS |
AATGAGTTGTAATAATTGTC+TGG | 0.395962 | 5_4:-41904810 | None:intergenic |
CAGTTTCTAGATCCATAATA+TGG | 0.399797 | 5_4:+41905501 | Msa0851520:CDS |
TATGGCGCAGCACCAAAATA+AGG | 0.406936 | 5_4:-41904535 | None:intergenic |
TCAATACAGCTTCCTTCCTT+CGG | 0.409580 | 5_4:-41902472 | None:intergenic |
AAGCTGTATTGACTGACTTA+TGG | 0.419680 | 5_4:+41902483 | Msa0851520:five_prime_UTR |
ATAACATTAATTTCTACCTA+TGG | 0.426049 | 5_4:-41906080 | None:intergenic |
TGGTCTGCTTCGTGATTATC+GGG | 0.429907 | 5_4:+41905604 | Msa0851520:CDS |
GATCCATAATATGGTGTGAA+TGG | 0.430360 | 5_4:+41905510 | Msa0851520:CDS |
CTCATGGCGCGAAACTAATA+GGG | 0.443455 | 5_4:+41905871 | Msa0851520:CDS |
TAGCAAAAGTGTTGAAGAAT+CGG | 0.443544 | 5_4:+41904726 | Msa0851520:CDS |
TAGCAGAAGTGTTGAAGAAT+CGG | 0.450364 | 5_4:+41904756 | Msa0851520:CDS |
TGCTTAGTGTCACATCTTCA+AGG | 0.456299 | 5_4:+41905335 | Msa0851520:CDS |
AGCAGATCATCTTGCAAAGA+TGG | 0.464394 | 5_4:+41905895 | Msa0851520:CDS |
AATAAGTTTGAGATATCATA+AGG | 0.465396 | 5_4:-41906205 | None:intergenic |
AAAGGACAAAGCAAAGTAAT+CGG | 0.468833 | 5_4:-41902835 | None:intergenic |
CATCAGGGTAGAGATGATCT+TGG | 0.468875 | 5_4:+41905209 | Msa0851520:intron |
TGGAAACATACTTTCTGAAT+CGG | 0.481170 | 5_4:+41904666 | Msa0851520:CDS |
AAAAGAAAGTCCAGAAGGAA+TGG | 0.482543 | 5_4:+41905273 | Msa0851520:CDS |
CATACTTTCTGAATCGGATA+CGG | 0.483563 | 5_4:+41904672 | Msa0851520:CDS |
CTTGCAAAGATGGCTGTTTG+TGG | 0.484608 | 5_4:+41905905 | Msa0851520:CDS |
TTCGTTATTGCAGGCTCCCA+TGG | 0.484694 | 5_4:+41904470 | Msa0851520:intron |
TGAGTAAGTTTGATGAGTCT+CGG | 0.487445 | 5_4:+41905840 | Msa0851520:CDS |
GGAAAGAAATAATGAGGTAA+AGG | 0.490784 | 5_4:-41906231 | None:intergenic |
TCAAGGAGATACTTTCTTGG+TGG | 0.510759 | 5_4:+41905661 | Msa0851520:CDS |
TGCGTAAAGGTTAGAACATA+CGG | 0.511440 | 5_4:-41905416 | None:intergenic |
TTTGATTCTTTCCTGCGTAA+AGG | 0.512755 | 5_4:-41905429 | None:intergenic |
TCTGTAAATAAAGAAACAGC+TGG | 0.514986 | 5_4:+41905575 | Msa0851520:CDS |
AAGCGCGTTGTTGCATTGTA+CGG | 0.519310 | 5_4:-41902521 | None:intergenic |
TCTTGGGATAAAATCAATAT+GGG | 0.519546 | 5_4:+41905724 | Msa0851520:CDS |
TAATTAAACGCTACTGTACT+GGG | 0.522290 | 5_4:+41904572 | Msa0851520:CDS |
GATTGTCTTCACAACACTCA+TGG | 0.524206 | 5_4:-41905759 | None:intergenic |
TACCATCTGAACGGAGTTGG+TGG | 0.537300 | 5_4:+41906031 | Msa0851520:three_prime_UTR |
ATATGTTTCTATTCGGACGT+TGG | 0.539419 | 5_4:+41902948 | Msa0851520:CDS |
ATGAGTTGTAATAATTGTCT+GGG | 0.545208 | 5_4:-41904809 | None:intergenic |
AAGTGTTGGTATACCAGGAA+AGG | 0.550194 | 5_4:-41902689 | None:intergenic |
CTCCACCAACTCCGTTCAGA+TGG | 0.552749 | 5_4:-41906033 | None:intergenic |
ATACTTTCTGAATCGGATAC+GGG | 0.559997 | 5_4:+41904673 | Msa0851520:CDS |
ACCCAATGAAAGCCGAAGGA+AGG | 0.563675 | 5_4:+41902460 | None:intergenic |
GGAACATATGTGCATGGACG+AGG | 0.565127 | 5_4:+41904593 | Msa0851520:CDS |
GCTTAGTGTCACATCTTCAA+GGG | 0.567599 | 5_4:+41905336 | Msa0851520:CDS |
AGTTACCATCTGAACGGAGT+TGG | 0.577250 | 5_4:+41906028 | Msa0851520:three_prime_UTR |
TTCTTTATTTACAGAACCGT+CGG | 0.577442 | 5_4:-41905567 | None:intergenic |
AGTCTCGGATTTCTCACTCA+TGG | 0.579409 | 5_4:+41905855 | Msa0851520:CDS |
GGCTGTTTGTGGAAATGATG+TGG | 0.583486 | 5_4:+41905916 | Msa0851520:CDS |
AGGGAAGCAACACAAGGCTA+AGG | 0.587634 | 5_4:+41905355 | Msa0851520:CDS |
TAACAATAGGATAGTTGCCA+CGG | 0.590991 | 5_4:-41904509 | None:intergenic |
CTTTCACATGAGACCACCAT+GGG | 0.591708 | 5_4:-41904486 | None:intergenic |
GTTGGTATACCAGGAAAGGA+TGG | 0.591926 | 5_4:-41902685 | None:intergenic |
AATCAACTACAGAAAACCAT+AGG | 0.600606 | 5_4:+41906064 | Msa0851520:three_prime_UTR |
TTTACGCAGGAAAGAATCAA+AGG | 0.603606 | 5_4:+41905431 | Msa0851520:CDS |
CAAGACCTAAAGAGAGAACA+AGG | 0.605269 | 5_4:-41905706 | None:intergenic |
CGTCTTGAATGATATTGCAA+AGG | 0.607459 | 5_4:-41905967 | None:intergenic |
TTTGTCTCGAAAGCTCCTCA+AGG | 0.608294 | 5_4:+41905644 | Msa0851520:CDS |
GCAGGAAAGAATCAAAGGAA+TGG | 0.612015 | 5_4:+41905436 | Msa0851520:CDS |
AGAAACCCAATGAAAGCCGA+AGG | 0.619539 | 5_4:+41902456 | None:intergenic |
GAACTTTGGGCTATATGGAG+AGG | 0.625001 | 5_4:+41905683 | Msa0851520:CDS |
GTATGTTCTAACCTTTACGC+AGG | 0.643436 | 5_4:+41905418 | Msa0851520:CDS |
GTTTGCAGTTACCATCTGAA+CGG | 0.645168 | 5_4:+41906022 | Msa0851520:three_prime_UTR |
GTTATTGCAGGCTCCCATGG+TGG | 0.653020 | 5_4:+41904473 | Msa0851520:intron |
GTACTGGGAACATATGTGCA+TGG | 0.660204 | 5_4:+41904587 | Msa0851520:CDS |
ACCAAGAAAGTATCTCCTTG+AGG | 0.666708 | 5_4:-41905659 | None:intergenic |
TCTTCAAGGGAAGCAACACA+AGG | 0.671841 | 5_4:+41905349 | Msa0851520:CDS |
GGACAAAGCAAAGTAATCGG+AGG | 0.679495 | 5_4:-41902832 | None:intergenic |
ATCATTCAAGACGATGCCAG+AGG | 0.688719 | 5_4:+41905977 | Msa0851520:CDS |
TGGACAAAACTAAATACCGA+CGG | 0.689514 | 5_4:+41905551 | Msa0851520:CDS |
GCTTTCACATGAGACCACCA+TGG | 0.703420 | 5_4:-41904487 | None:intergenic |
GTGGTCTCATGTGAAAGCCG+TGG | 0.720187 | 5_4:+41904492 | Msa0851520:CDS |
GGTCTGCTTCGTGATTATCG+GGG | 0.768767 | 5_4:+41905605 | Msa0851520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAAAAAAAAAATGGATT+CGG | + | chr5_4:41902623-41902642 | Msa0851520:exon | 10.0% |
!! | ATAAATAAAATTACTTACAA+AGG | - | chr5_4:41902856-41902875 | None:intergenic | 10.0% |
!! | TAAAAAAAAAGCAACATTAT+AGG | - | chr5_4:41902750-41902769 | None:intergenic | 15.0% |
!!! | TTTTTATTTTTGTTACATAC+AGG | + | chr5_4:41902809-41902828 | Msa0851520:intron | 15.0% |
!! | TTAACTATAACAATGAAATT+TGG | + | chr5_4:41903526-41903545 | Msa0851520:intron | 15.0% |
!! | TTATTATTGAAAATCAAGTA+TGG | + | chr5_4:41903555-41903574 | Msa0851520:intron | 15.0% |
!! | TATTATTGAAAATCAAGTAT+GGG | + | chr5_4:41903556-41903575 | Msa0851520:intron | 15.0% |
!! | AATGATTAAAGATAATTGTT+GGG | - | chr5_4:41903747-41903766 | None:intergenic | 15.0% |
!! | TAATGATTAAAGATAATTGT+TGG | - | chr5_4:41903748-41903767 | None:intergenic | 15.0% |
!! | TAAAATGATAAATGTGTATT+TGG | - | chr5_4:41904985-41905004 | None:intergenic | 15.0% |
!!! | ATTTTCAGACTATGTATAAT+TGG | - | chr5_4:41903135-41903154 | None:intergenic | 20.0% |
!!! | AAATGTCCAATGTTAAATTT+TGG | + | chr5_4:41903151-41903170 | Msa0851520:intron | 20.0% |
!! | TTTGACAAATTCAAAAACTA+CGG | - | chr5_4:41903224-41903243 | None:intergenic | 20.0% |
!!! | ATCTACTGTTAGTAATTTTA+TGG | - | chr5_4:41903349-41903368 | None:intergenic | 20.0% |
!!! | AAAAGAGTAAACAAACATTT+TGG | - | chr5_4:41903441-41903460 | None:intergenic | 20.0% |
!!! | TTACTCTTTTAACATTGAAT+TGG | + | chr5_4:41903451-41903470 | Msa0851520:intron | 20.0% |
!!! | TACTCTTTTAACATTGAATT+GGG | + | chr5_4:41903452-41903471 | Msa0851520:intron | 20.0% |
!! | ATTATTGAAAATCAAGTATG+GGG | + | chr5_4:41903557-41903576 | Msa0851520:intron | 20.0% |
!!! | TTTTATTTTCTTGTAGTTGT+AGG | + | chr5_4:41903898-41903917 | Msa0851520:intron | 20.0% |
!!! | CAAAATAAGGTATTAACAAT+AGG | - | chr5_4:41904525-41904544 | None:intergenic | 20.0% |
!!! | CTATTGTTAATACCTTATTT+TGG | + | chr5_4:41904523-41904542 | Msa0851520:CDS | 20.0% |
!! | ATAACATTAATTTCTACCTA+TGG | - | chr5_4:41906083-41906102 | None:intergenic | 20.0% |
!!! | AATAAGTTTGAGATATCATA+AGG | - | chr5_4:41906208-41906227 | None:intergenic | 20.0% |
!! | TATGATATCTCAAACTTATT+TGG | + | chr5_4:41906208-41906227 | Msa0851520:three_prime_UTR | 20.0% |
! | TCTATCTTTCTTTACCATTA+AGG | + | chr5_4:41902552-41902571 | Msa0851520:five_prime_UTR | 25.0% |
!! | AAAAAAAAATGGATTCGGAA+TGG | + | chr5_4:41902628-41902647 | Msa0851520:exon | 25.0% |
!! | AAAAAAAATGGATTCGGAAT+GGG | + | chr5_4:41902629-41902648 | Msa0851520:exon | 25.0% |
!! | AAAAGAAAAGAAAGAAGTGT+TGG | - | chr5_4:41902706-41902725 | None:intergenic | 25.0% |
!!! | AATTTGCAGTGTTATTTACT+TGG | + | chr5_4:41903049-41903068 | Msa0851520:CDS | 25.0% |
!! | ATCTGAGTAAACAAACATTT+TGG | + | chr5_4:41903175-41903194 | Msa0851520:intron | 25.0% |
!! | ACTCTTTTAACATTGAATTG+GGG | + | chr5_4:41903453-41903472 | Msa0851520:intron | 25.0% |
! | ACTAAGAATAAGCAAAATTG+AGG | + | chr5_4:41903599-41903618 | Msa0851520:intron | 25.0% |
! | ATATATGCAATAATGCCTTA+AGG | + | chr5_4:41903644-41903663 | Msa0851520:intron | 25.0% |
! | ATACTAAATTATGCAATGTC+AGG | - | chr5_4:41904135-41904154 | None:intergenic | 25.0% |
!! | AGAAGGAACAAAAACAATTT+TGG | + | chr5_4:41904306-41904325 | Msa0851520:intron | 25.0% |
!! | GAAGGAACAAAAACAATTTT+GGG | + | chr5_4:41904307-41904326 | Msa0851520:intron | 25.0% |
!!! | CAGAAAAGCATTTTTAGAAT+CGG | + | chr5_4:41904696-41904715 | Msa0851520:CDS | 25.0% |
! | ATGAGTTGTAATAATTGTCT+GGG | - | chr5_4:41904812-41904831 | None:intergenic | 25.0% |
! | AATGAGTTGTAATAATTGTC+TGG | - | chr5_4:41904813-41904832 | None:intergenic | 25.0% |
!! | GAAGAAACTTTTAGTATATC+AGG | + | chr5_4:41904840-41904859 | Msa0851520:CDS | 25.0% |
!! | AACTTTTAGTATATCAGGTA+TGG | + | chr5_4:41904845-41904864 | Msa0851520:intron | 25.0% |
!! | ACTTTTAGTATATCAGGTAT+GGG | + | chr5_4:41904846-41904865 | Msa0851520:intron | 25.0% |
!! | TAACCCATATGATGATTTTA+AGG | + | chr5_4:41904908-41904927 | Msa0851520:intron | 25.0% |
! | AAGCCTTAAAATCATCATAT+GGG | - | chr5_4:41904914-41904933 | None:intergenic | 25.0% |
! | AAAGCCTTAAAATCATCATA+TGG | - | chr5_4:41904915-41904934 | None:intergenic | 25.0% |
! | ATTCGTATCACAAATTTACA+TGG | + | chr5_4:41905044-41905063 | Msa0851520:intron | 25.0% |
! | ACAAATTTACATGGATGTTA+TGG | + | chr5_4:41905053-41905072 | Msa0851520:intron | 25.0% |
! | GATTCAGAATATTTGCAATT+TGG | - | chr5_4:41905481-41905500 | None:intergenic | 25.0% |
! | TCTTGGGATAAAATCAATAT+GGG | + | chr5_4:41905724-41905743 | Msa0851520:CDS | 25.0% |
TTTCTTTACCATTAAGGCTT+CGG | + | chr5_4:41902558-41902577 | Msa0851520:five_prime_UTR | 30.0% | |
AAAGGACAAAGCAAAGTAAT+CGG | - | chr5_4:41902838-41902857 | None:intergenic | 30.0% | |
! | GTTGCAGATATGTTTCTATT+CGG | + | chr5_4:41902941-41902960 | Msa0851520:intron | 30.0% |
!!! | ATCAACGATGTCTTGTTTTT+TGG | + | chr5_4:41902992-41903011 | Msa0851520:CDS | 30.0% |
!!! | TCAACGATGTCTTGTTTTTT+GGG | + | chr5_4:41902993-41903012 | Msa0851520:CDS | 30.0% |
CAGATGCCAAAATTTAACAT+TGG | - | chr5_4:41903160-41903179 | None:intergenic | 30.0% | |
ACTAACAAAAGACACATTCA+AGG | - | chr5_4:41903285-41903304 | None:intergenic | 30.0% | |
TACTAACAGTAGATACATTG+AGG | + | chr5_4:41903355-41903374 | Msa0851520:intron | 30.0% | |
ACTAACAGTAGATACATTGA+GGG | + | chr5_4:41903356-41903375 | Msa0851520:intron | 30.0% | |
GGATGTTAAAAGTGATATCA+AGG | + | chr5_4:41903474-41903493 | Msa0851520:intron | 30.0% | |
!!! | AGTTTTAGTTATCAGCCTAT+TGG | + | chr5_4:41903707-41903726 | Msa0851520:intron | 30.0% |
GTCTAGAAAAACATTCAAGT+GGG | - | chr5_4:41903940-41903959 | None:intergenic | 30.0% | |
TGTCTAGAAAAACATTCAAG+TGG | - | chr5_4:41903941-41903960 | None:intergenic | 30.0% | |
TTAAATATTGGTCACCATAG+TGG | + | chr5_4:41903981-41904000 | Msa0851520:intron | 30.0% | |
! | CATTTTAAGCAGCCATAAAA+CGG | - | chr5_4:41904068-41904087 | None:intergenic | 30.0% |
ATAAAGTTAAGAGTCTGAGT+AGG | + | chr5_4:41904251-41904270 | Msa0851520:intron | 30.0% | |
AAACTAGACACAAAATCAGA+AGG | + | chr5_4:41904289-41904308 | Msa0851520:intron | 30.0% | |
! | CATTTTGAATTCGTTATTGC+AGG | + | chr5_4:41904461-41904480 | Msa0851520:intron | 30.0% |
ATTAAGAGCTTGTAGATGTA+TGG | - | chr5_4:41904556-41904575 | None:intergenic | 30.0% | |
TTAATTAAACGCTACTGTAC+TGG | + | chr5_4:41904571-41904590 | Msa0851520:CDS | 30.0% | |
TAATTAAACGCTACTGTACT+GGG | + | chr5_4:41904572-41904591 | Msa0851520:CDS | 30.0% | |
! | TGTGATTTTCAGATTGAAGA+TGG | - | chr5_4:41904626-41904645 | None:intergenic | 30.0% |
TGGAAACATACTTTCTGAAT+CGG | + | chr5_4:41904666-41904685 | Msa0851520:CDS | 30.0% | |
!!! | AAAGCATTTTTAGAATCGGA+TGG | + | chr5_4:41904700-41904719 | Msa0851520:CDS | 30.0% |
!! | TAGCAAAAGTGTTGAAGAAT+CGG | + | chr5_4:41904726-41904745 | Msa0851520:CDS | 30.0% |
! | AAATGTGTATTTGGAGTTGA+TGG | - | chr5_4:41904976-41904995 | None:intergenic | 30.0% |
ACACGATGATTAGCATTAAT+TGG | - | chr5_4:41905100-41905119 | None:intergenic | 30.0% | |
TAAGAAAGTTGTTTGCATCA+GGG | + | chr5_4:41905194-41905213 | Msa0851520:intron | 30.0% | |
AAGTAAAAAGAAAGTCCAGA+AGG | + | chr5_4:41905268-41905287 | Msa0851520:CDS | 30.0% | |
CATATTATGGATCTAGAAAC+TGG | - | chr5_4:41905503-41905522 | None:intergenic | 30.0% | |
! | CAGTTTCTAGATCCATAATA+TGG | + | chr5_4:41905501-41905520 | Msa0851520:CDS | 30.0% |
TTTCCATTCACACCATATTA+TGG | - | chr5_4:41905516-41905535 | None:intergenic | 30.0% | |
! | TTCTTTATTTACAGAACCGT+CGG | - | chr5_4:41905570-41905589 | None:intergenic | 30.0% |
TCTGTAAATAAAGAAACAGC+TGG | + | chr5_4:41905575-41905594 | Msa0851520:CDS | 30.0% | |
!! | AATAAAGAAACAGCTGGTTT+TGG | + | chr5_4:41905581-41905600 | Msa0851520:CDS | 30.0% |
GTCTTGGGATAAAATCAATA+TGG | + | chr5_4:41905723-41905742 | Msa0851520:CDS | 30.0% | |
AAACCTGTGTGAAAAAAATC+TGG | + | chr5_4:41905810-41905829 | Msa0851520:CDS | 30.0% | |
!!! | TTTCCAGATTTTTTTCACAC+AGG | - | chr5_4:41905816-41905835 | None:intergenic | 30.0% |
! | TCTTAGATATTTTGTTCCTC+TGG | - | chr5_4:41905996-41906015 | None:intergenic | 30.0% |
AATCAACTACAGAAAACCAT+AGG | + | chr5_4:41906064-41906083 | Msa0851520:three_prime_UTR | 30.0% | |
ATGTTATAGCTTCCATTTAG+TGG | + | chr5_4:41906096-41906115 | Msa0851520:three_prime_UTR | 30.0% | |
ATGTCAACTTAACCACTAAA+TGG | - | chr5_4:41906111-41906130 | None:intergenic | 30.0% | |
!! | AAGCTGTATTGACTGACTTA+TGG | + | chr5_4:41902483-41902502 | Msa0851520:five_prime_UTR | 35.0% |
! | ATATGTTTCTATTCGGACGT+TGG | + | chr5_4:41902948-41902967 | Msa0851520:CDS | 35.0% |
! | GACATTTTCTCTCACATTTG+TGG | + | chr5_4:41903414-41903433 | Msa0851520:intron | 35.0% |
! | GCAATAATGCCTTAAGGTTT+TGG | + | chr5_4:41903650-41903669 | Msa0851520:intron | 35.0% |
!!! | TAATGCCTTAAGGTTTTGGA+TGG | + | chr5_4:41903654-41903673 | Msa0851520:intron | 35.0% |
! | GATAATTGTTGGGTTGTCAA+GGG | - | chr5_4:41903737-41903756 | None:intergenic | 35.0% |
! | AGATAATTGTTGGGTTGTCA+AGG | - | chr5_4:41903738-41903757 | None:intergenic | 35.0% |
! | TGACCAGTGCTGTTAAATAT+TGG | + | chr5_4:41903969-41903988 | Msa0851520:intron | 35.0% |
TGACCAATATTTAACAGCAC+TGG | - | chr5_4:41903975-41903994 | None:intergenic | 35.0% | |
! | CGTTTTATGGCTGCTTAAAA+TGG | + | chr5_4:41904066-41904085 | Msa0851520:intron | 35.0% |
TTTATGGCTGCTTAAAATGG+CGG | + | chr5_4:41904069-41904088 | Msa0851520:intron | 35.0% | |
TATAGCATTCACATGCATGT+TGG | + | chr5_4:41904152-41904171 | Msa0851520:intron | 35.0% | |
ATGCTCAAAAGCAATACCAA+AGG | - | chr5_4:41904181-41904200 | None:intergenic | 35.0% | |
AGCTAGGTTGTGAAAGAAAA+AGG | + | chr5_4:41904338-41904357 | Msa0851520:intron | 35.0% | |
TAACAATAGGATAGTTGCCA+CGG | - | chr5_4:41904512-41904531 | None:intergenic | 35.0% | |
CATACTTTCTGAATCGGATA+CGG | + | chr5_4:41904672-41904691 | Msa0851520:CDS | 35.0% | |
ATACTTTCTGAATCGGATAC+GGG | + | chr5_4:41904673-41904692 | Msa0851520:CDS | 35.0% | |
!! | TAGCAGAAGTGTTGAAGAAT+CGG | + | chr5_4:41904756-41904775 | Msa0851520:CDS | 35.0% |
! | TTAATTGGTCTCCTTGTATG+TGG | - | chr5_4:41905085-41905104 | None:intergenic | 35.0% |
CTAAGAAAGTTGTTTGCATC+AGG | + | chr5_4:41905193-41905212 | Msa0851520:intron | 35.0% | |
AAAAGAAAGTCCAGAAGGAA+TGG | + | chr5_4:41905273-41905292 | Msa0851520:CDS | 35.0% | |
AAGGAAAAAGAACTTCGAGT+CGG | + | chr5_4:41905374-41905393 | Msa0851520:CDS | 35.0% | |
TGCGTAAAGGTTAGAACATA+CGG | - | chr5_4:41905419-41905438 | None:intergenic | 35.0% | |
TTTGATTCTTTCCTGCGTAA+AGG | - | chr5_4:41905432-41905451 | None:intergenic | 35.0% | |
TTTACGCAGGAAAGAATCAA+AGG | + | chr5_4:41905431-41905450 | Msa0851520:CDS | 35.0% | |
GATCCATAATATGGTGTGAA+TGG | + | chr5_4:41905510-41905529 | Msa0851520:CDS | 35.0% | |
TGGACAAAACTAAATACCGA+CGG | + | chr5_4:41905551-41905570 | Msa0851520:CDS | 35.0% | |
ATACTTTCTTGGTGGAACTT+TGG | + | chr5_4:41905669-41905688 | Msa0851520:CDS | 35.0% | |
TACTTTCTTGGTGGAACTTT+GGG | + | chr5_4:41905670-41905689 | Msa0851520:CDS | 35.0% | |
TTGTTCTCTCTTTAGGTCTT+GGG | + | chr5_4:41905708-41905727 | Msa0851520:CDS | 35.0% | |
TGAGTAAGTTTGATGAGTCT+CGG | + | chr5_4:41905840-41905859 | Msa0851520:CDS | 35.0% | |
CGTCTTGAATGATATTGCAA+AGG | - | chr5_4:41905970-41905989 | None:intergenic | 35.0% | |
TCAATACAGCTTCCTTCCTT+CGG | - | chr5_4:41902475-41902494 | None:intergenic | 40.0% | |
! | TTTTCACTCCGAAGCCTTAA+TGG | - | chr5_4:41902569-41902588 | None:intergenic | 40.0% |
!! | AAGTGTTGGTATACCAGGAA+AGG | - | chr5_4:41902692-41902711 | None:intergenic | 40.0% |
!! | GAAAGAAGTGTTGGTATACC+AGG | - | chr5_4:41902697-41902716 | None:intergenic | 40.0% |
CATCTCCATCCAAAACCTTA+AGG | - | chr5_4:41903662-41903681 | None:intergenic | 40.0% | |
CATCCTTCACAAATTGGCAA+TGG | - | chr5_4:41904035-41904054 | None:intergenic | 40.0% | |
CATTGCCAATTTGTGAAGGA+TGG | + | chr5_4:41904033-41904052 | Msa0851520:intron | 40.0% | |
ATCCACCATCCTTCACAAAT+TGG | - | chr5_4:41904041-41904060 | None:intergenic | 40.0% | |
TTACTTTCTGCCATCCGAAA+TGG | + | chr5_4:41904098-41904117 | Msa0851520:intron | 40.0% | |
AGGAGCAGTGTTATCCATTT+CGG | - | chr5_4:41904115-41904134 | None:intergenic | 40.0% | |
CTCAGAACAATCATCATCAC+TGG | + | chr5_4:41904389-41904408 | Msa0851520:intron | 40.0% | |
! | CACACATTTTGAATTGAGCG+AGG | + | chr5_4:41904642-41904661 | Msa0851520:CDS | 40.0% |
! | CATTTTGAATTGAGCGAGGA+TGG | + | chr5_4:41904646-41904665 | Msa0851520:CDS | 40.0% |
TATGGTAATCGCCACATACA+AGG | + | chr5_4:41905071-41905090 | Msa0851520:intron | 40.0% | |
TGCTAATCATCGTGTCACAT+AGG | + | chr5_4:41905105-41905124 | Msa0851520:intron | 40.0% | |
AGGATATACACCACAAGACT+TGG | + | chr5_4:41905125-41905144 | Msa0851520:intron | 40.0% | |
GGATATACACCACAAGACTT+GGG | + | chr5_4:41905126-41905145 | Msa0851520:intron | 40.0% | |
GATATACACCACAAGACTTG+GGG | + | chr5_4:41905127-41905146 | Msa0851520:intron | 40.0% | |
TGCTTAGTGTCACATCTTCA+AGG | + | chr5_4:41905335-41905354 | Msa0851520:CDS | 40.0% | |
GCTTAGTGTCACATCTTCAA+GGG | + | chr5_4:41905336-41905355 | Msa0851520:CDS | 40.0% | |
AGGAAAAAGAACTTCGAGTC+GGG | + | chr5_4:41905375-41905394 | Msa0851520:CDS | 40.0% | |
GTATGTTCTAACCTTTACGC+AGG | + | chr5_4:41905418-41905437 | Msa0851520:CDS | 40.0% | |
GCAGGAAAGAATCAAAGGAA+TGG | + | chr5_4:41905436-41905455 | Msa0851520:CDS | 40.0% | |
ATGGTGTGAATGGAAAAAGC+CGG | + | chr5_4:41905520-41905539 | Msa0851520:CDS | 40.0% | |
GAATGGAAAAAGCCGGAATT+CGG | + | chr5_4:41905527-41905546 | Msa0851520:CDS | 40.0% | |
!! | AGTTTTGTCCATCCGAATTC+CGG | - | chr5_4:41905542-41905561 | None:intergenic | 40.0% |
!!! | AAAGAAACAGCTGGTTTTGG+TGG | + | chr5_4:41905584-41905603 | Msa0851520:CDS | 40.0% |
TTCGAGACAAATGCGCAAAT+TGG | - | chr5_4:41905635-41905654 | None:intergenic | 40.0% | |
TCCTCAAGGAGATACTTTCT+TGG | + | chr5_4:41905658-41905677 | Msa0851520:CDS | 40.0% | |
!! | ACCAAGAAAGTATCTCCTTG+AGG | - | chr5_4:41905662-41905681 | None:intergenic | 40.0% |
TCAAGGAGATACTTTCTTGG+TGG | + | chr5_4:41905661-41905680 | Msa0851520:CDS | 40.0% | |
CAAGACCTAAAGAGAGAACA+AGG | - | chr5_4:41905709-41905728 | None:intergenic | 40.0% | |
CTTGTTCTCTCTTTAGGTCT+TGG | + | chr5_4:41905707-41905726 | Msa0851520:CDS | 40.0% | |
GATTGTCTTCACAACACTCA+TGG | - | chr5_4:41905762-41905781 | None:intergenic | 40.0% | |
! | TTCACACAGGTTTCAGCTTT+TGG | - | chr5_4:41905803-41905822 | None:intergenic | 40.0% |
AGCAGATCATCTTGCAAAGA+TGG | + | chr5_4:41905895-41905914 | Msa0851520:CDS | 40.0% | |
!! | GTGGAAATGATGTGGTTTTG+TGG | + | chr5_4:41905924-41905943 | Msa0851520:CDS | 40.0% |
AGGCTATGTGAAAAATCAGC+TGG | - | chr5_4:41905950-41905969 | None:intergenic | 40.0% | |
GTTTGCAGTTACCATCTGAA+CGG | + | chr5_4:41906022-41906041 | Msa0851520:three_prime_UTR | 40.0% | |
AAGCGCGTTGTTGCATTGTA+CGG | - | chr5_4:41902524-41902543 | None:intergenic | 45.0% | |
AATCACTCACCATCCTTTCC+TGG | + | chr5_4:41902676-41902695 | Msa0851520:CDS | 45.0% | |
GTTGGTATACCAGGAAAGGA+TGG | - | chr5_4:41902688-41902707 | None:intergenic | 45.0% | |
GGACAAAGCAAAGTAATCGG+AGG | - | chr5_4:41902835-41902854 | None:intergenic | 45.0% | |
GTGACAACGTGACACATTCA+AGG | - | chr5_4:41903202-41903221 | None:intergenic | 45.0% | |
GTAGCTTCTTGATTGCTACG+AGG | + | chr5_4:41903823-41903842 | Msa0851520:intron | 45.0% | |
TACGAGGTTGACTACTAGCT+TGG | + | chr5_4:41903839-41903858 | Msa0851520:intron | 45.0% | |
!! | TAACAGCACTGGTCAAGACT+TGG | - | chr5_4:41903964-41903983 | None:intergenic | 45.0% |
!! | TTGGTCACCATAGTGGATTG+CGG | + | chr5_4:41903988-41904007 | Msa0851520:intron | 45.0% |
CCTTCACAAATTGGCAATGG+CGG | - | chr5_4:41904032-41904051 | None:intergenic | 45.0% | |
TGCCAATTTGTGAAGGATGG+TGG | + | chr5_4:41904036-41904055 | Msa0851520:intron | 45.0% | |
!!! | TGGTGGATCATGCCGTTTTA+TGG | + | chr5_4:41904053-41904072 | Msa0851520:intron | 45.0% |
GCAGTGTTATCCATTTCGGA+TGG | - | chr5_4:41904111-41904130 | None:intergenic | 45.0% | |
!! | ACATGCATGTTGGCTTCCTT+TGG | + | chr5_4:41904162-41904181 | Msa0851520:intron | 45.0% |
!! | ATTTTGGGTCAAGAGCAGCT+AGG | + | chr5_4:41904322-41904341 | Msa0851520:intron | 45.0% |
CTTTCACATGAGACCACCAT+GGG | - | chr5_4:41904489-41904508 | None:intergenic | 45.0% | |
TATGGCGCAGCACCAAAATA+AGG | - | chr5_4:41904538-41904557 | None:intergenic | 45.0% | |
GTACTGGGAACATATGTGCA+TGG | + | chr5_4:41904587-41904606 | Msa0851520:CDS | 45.0% | |
CATCAGGGTAGAGATGATCT+TGG | + | chr5_4:41905209-41905228 | Msa0851520:intron | 45.0% | |
AAGCACAACTCCATTCCTTC+TGG | - | chr5_4:41905286-41905305 | None:intergenic | 45.0% | |
TCTTCAAGGGAAGCAACACA+AGG | + | chr5_4:41905349-41905368 | Msa0851520:CDS | 45.0% | |
GTGGTCTGCTTCGTGATTAT+CGG | + | chr5_4:41905603-41905622 | Msa0851520:CDS | 45.0% | |
TGGTCTGCTTCGTGATTATC+GGG | + | chr5_4:41905604-41905623 | Msa0851520:CDS | 45.0% | |
TTTGTCTCGAAAGCTCCTCA+AGG | + | chr5_4:41905644-41905663 | Msa0851520:CDS | 45.0% | |
TGGTGGAACTTTGGGCTATA+TGG | + | chr5_4:41905678-41905697 | Msa0851520:CDS | 45.0% | |
GAACTTTGGGCTATATGGAG+AGG | + | chr5_4:41905683-41905702 | Msa0851520:CDS | 45.0% | |
!! | AGAGGCCTTGTTCTCTCTTT+AGG | + | chr5_4:41905701-41905720 | Msa0851520:CDS | 45.0% |
AGTCTCGGATTTCTCACTCA+TGG | + | chr5_4:41905855-41905874 | Msa0851520:CDS | 45.0% | |
ACTCATGGCGCGAAACTAAT+AGG | + | chr5_4:41905870-41905889 | Msa0851520:CDS | 45.0% | |
CTCATGGCGCGAAACTAATA+GGG | + | chr5_4:41905871-41905890 | Msa0851520:CDS | 45.0% | |
CTTGCAAAGATGGCTGTTTG+TGG | + | chr5_4:41905905-41905924 | Msa0851520:CDS | 45.0% | |
GGCTGTTTGTGGAAATGATG+TGG | + | chr5_4:41905916-41905935 | Msa0851520:CDS | 45.0% | |
ATCATTCAAGACGATGCCAG+AGG | + | chr5_4:41905977-41905996 | Msa0851520:CDS | 45.0% | |
AGTTACCATCTGAACGGAGT+TGG | + | chr5_4:41906028-41906047 | Msa0851520:three_prime_UTR | 45.0% | |
!! | AATACAAAATAAAAAAAAAA+TGG | + | chr5_4:41902617-41902636 | Msa0851520:exon | 5.0% |
GGAGATGTAGTGCTGTCTTG+TGG | + | chr5_4:41903675-41903694 | Msa0851520:intron | 50.0% | |
! | GTTGTCAAGGGTGCACCAAT+AGG | - | chr5_4:41903725-41903744 | None:intergenic | 50.0% |
CCGCCATTGCCAATTTGTGA+AGG | + | chr5_4:41904029-41904048 | Msa0851520:intron | 50.0% | |
TTCGTTATTGCAGGCTCCCA+TGG | + | chr5_4:41904470-41904489 | Msa0851520:intron | 50.0% | |
GCTTTCACATGAGACCACCA+TGG | - | chr5_4:41904490-41904509 | None:intergenic | 50.0% | |
GGAACATATGTGCATGGACG+AGG | + | chr5_4:41904593-41904612 | Msa0851520:CDS | 50.0% | |
AGGGAAGCAACACAAGGCTA+AGG | + | chr5_4:41905355-41905374 | Msa0851520:CDS | 50.0% | |
GGAAAAAGCCGGAATTCGGA+TGG | + | chr5_4:41905531-41905550 | Msa0851520:CDS | 50.0% | |
GGTCTGCTTCGTGATTATCG+GGG | + | chr5_4:41905605-41905624 | Msa0851520:CDS | 50.0% | |
TACCATCTGAACGGAGTTGG+TGG | + | chr5_4:41906031-41906050 | Msa0851520:three_prime_UTR | 50.0% | |
!! | GTCACCATAGTGGATTGCGG+TGG | + | chr5_4:41903991-41904010 | Msa0851520:intron | 55.0% |
ACTGCCACCGCAATCCACTA+TGG | - | chr5_4:41903998-41904017 | None:intergenic | 55.0% | |
GTTATTGCAGGCTCCCATGG+TGG | + | chr5_4:41904473-41904492 | Msa0851520:intron | 55.0% | |
GTGGTCTCATGTGAAAGCCG+TGG | + | chr5_4:41904492-41904511 | Msa0851520:CDS | 55.0% | |
GCATCTCTCCCCAAGTCTTG+TGG | - | chr5_4:41905138-41905157 | None:intergenic | 55.0% | |
CTCCACCAACTCCGTTCAGA+TGG | - | chr5_4:41906036-41906055 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 41902467 | 41906240 | 41902467 | ID=Msa0851520;Name=Msa0851520 |
chr5_4 | mRNA | 41902467 | 41906240 | 41902467 | ID=Msa0851520-mRNA-1;Parent=Msa0851520;Name=Msa0851520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|1|0.8|1|1|1|5|219|465 |
chr5_4 | exon | 41902467 | 41902697 | 41902467 | ID=Msa0851520-mRNA-1:exon:13284;Parent=Msa0851520-mRNA-1 |
chr5_4 | exon | 41902831 | 41902857 | 41902831 | ID=Msa0851520-mRNA-1:exon:13285;Parent=Msa0851520-mRNA-1 |
chr5_4 | exon | 41902948 | 41903070 | 41902948 | ID=Msa0851520-mRNA-1:exon:13286;Parent=Msa0851520-mRNA-1 |
chr5_4 | exon | 41904483 | 41904861 | 41904483 | ID=Msa0851520-mRNA-1:exon:13287;Parent=Msa0851520-mRNA-1 |
chr5_4 | exon | 41905215 | 41906240 | 41905215 | ID=Msa0851520-mRNA-1:exon:13288;Parent=Msa0851520-mRNA-1 |
chr5_4 | five_prime_UTR | 41902467 | 41902635 | 41902467 | ID=Msa0851520-mRNA-1:five_prime_utr;Parent=Msa0851520-mRNA-1 |
chr5_4 | CDS | 41902636 | 41902697 | 41902636 | ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1 |
chr5_4 | CDS | 41902831 | 41902857 | 41902831 | ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1 |
chr5_4 | CDS | 41902948 | 41903070 | 41902948 | ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1 |
chr5_4 | CDS | 41904483 | 41904861 | 41904483 | ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1 |
chr5_4 | CDS | 41905215 | 41906021 | 41905215 | ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1 |
chr5_4 | three_prime_UTR | 41906022 | 41906240 | 41906022 | ID=Msa0851520-mRNA-1:three_prime_utr;Parent=Msa0851520-mRNA-1 |
Gene Sequence |
Protein sequence |