AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851520 MtrunA17_Chr5g0427761 93.103 464 20 2 1 464 1 452 0.0 877
Msa0851520 MtrunA17_Chr2g0281001 34.132 167 105 3 303 464 35 201 1.23e-20 89.7
Msa0851520 MtrunA17_Chr4g0049651 23.019 265 173 8 14 249 12 274 1.42e-16 82.0
Msa0851520 MtrunA17_Chr4g0060581 32.323 99 67 0 10 108 13 111 1.78e-15 74.3
Msa0851520 MtrunA17_Chr3g0097141 34.737 95 62 0 12 106 7 101 3.02e-14 70.5
Msa0851520 MtrunA17_Chr6g0480701 30.120 166 113 2 302 464 623 788 3.62e-14 75.1
Msa0851520 MtrunA17_Chr5g0443431 36.471 85 54 0 22 106 17 101 7.19e-12 63.5
Msa0851520 MtrunA17_Chr5g0416561 30.476 105 73 0 1 105 58 162 7.26e-12 65.5
Msa0851520 MtrunA17_Chr3g0132031 29.787 94 66 0 12 105 7 100 3.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851520 AT1G74520.1 30.405 148 89 3 11 144 11 158 6.89e-17 79.0
Msa0851520 AT1G74520.2 30.405 148 89 3 11 144 11 158 6.89e-17 79.0
Msa0851520 AT1G69700.1 28.369 141 97 1 11 151 13 149 2.97e-15 74.3
Msa0851520 AT2G42820.1 31.959 97 66 0 10 106 5 101 5.59e-13 67.0

Find 97 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATATCTCAAACTTATT+TGG 0.127608 5_4:+41906208 Msa0851520:three_prime_UTR
ACTCATGGCGCGAAACTAAT+AGG 0.204376 5_4:+41905870 Msa0851520:CDS
TTTCCATTCACACCATATTA+TGG 0.214195 5_4:-41905513 None:intergenic
GATTCAGAATATTTGCAATT+TGG 0.215007 5_4:-41905478 None:intergenic
AGAGGCCTTGTTCTCTCTTT+AGG 0.218594 5_4:+41905701 Msa0851520:CDS
TTCACACAGGTTTCAGCTTT+TGG 0.219860 5_4:-41905800 None:intergenic
CTATTGTTAATACCTTATTT+TGG 0.243172 5_4:+41904523 Msa0851520:CDS
CTTGTTCTCTCTTTAGGTCT+TGG 0.247801 5_4:+41905707 Msa0851520:CDS
TCTATCTTTCTTTACCATTA+AGG 0.249037 5_4:+41902552 Msa0851520:five_prime_UTR
GTGGTCTGCTTCGTGATTAT+CGG 0.253798 5_4:+41905603 Msa0851520:CDS
TGGTGGAACTTTGGGCTATA+TGG 0.256656 5_4:+41905678 Msa0851520:CDS
TACTTTCTTGGTGGAACTTT+GGG 0.281464 5_4:+41905670 Msa0851520:CDS
ATGTCAACTTAACCACTAAA+TGG 0.290537 5_4:-41906108 None:intergenic
GTCTTGGGATAAAATCAATA+TGG 0.303390 5_4:+41905723 Msa0851520:CDS
TTCGAGACAAATGCGCAAAT+TGG 0.310319 5_4:-41905632 None:intergenic
TTGTTCTCTCTTTAGGTCTT+GGG 0.332936 5_4:+41905708 Msa0851520:CDS
AATAAAGAAACAGCTGGTTT+TGG 0.354908 5_4:+41905581 Msa0851520:CDS
ATGTTATAGCTTCCATTTAG+TGG 0.362109 5_4:+41906096 Msa0851520:three_prime_UTR
GTTGCAGATATGTTTCTATT+CGG 0.367407 5_4:+41902941 Msa0851520:intron
TTAATTAAACGCTACTGTAC+TGG 0.372209 5_4:+41904571 Msa0851520:CDS
AATTTGCAGTGTTATTTACT+TGG 0.376792 5_4:+41903049 Msa0851520:CDS
ATTAAGAGCTTGTAGATGTA+TGG 0.379499 5_4:-41904553 None:intergenic
AAGCACAACTCCATTCCTTC+TGG 0.379728 5_4:-41905283 None:intergenic
CATATTATGGATCTAGAAAC+TGG 0.383191 5_4:-41905500 None:intergenic
CAAAATAAGGTATTAACAAT+AGG 0.384113 5_4:-41904522 None:intergenic
TCCTCAAGGAGATACTTTCT+TGG 0.388568 5_4:+41905658 Msa0851520:CDS
AATCACTCACCATCCTTTCC+TGG 0.389151 5_4:+41902676 Msa0851520:CDS
TTTCTTTACCATTAAGGCTT+CGG 0.389378 5_4:+41902558 Msa0851520:five_prime_UTR
ATACTTTCTTGGTGGAACTT+TGG 0.389611 5_4:+41905669 Msa0851520:CDS
AATGAGTTGTAATAATTGTC+TGG 0.395962 5_4:-41904810 None:intergenic
CAGTTTCTAGATCCATAATA+TGG 0.399797 5_4:+41905501 Msa0851520:CDS
TATGGCGCAGCACCAAAATA+AGG 0.406936 5_4:-41904535 None:intergenic
TCAATACAGCTTCCTTCCTT+CGG 0.409580 5_4:-41902472 None:intergenic
AAGCTGTATTGACTGACTTA+TGG 0.419680 5_4:+41902483 Msa0851520:five_prime_UTR
ATAACATTAATTTCTACCTA+TGG 0.426049 5_4:-41906080 None:intergenic
TGGTCTGCTTCGTGATTATC+GGG 0.429907 5_4:+41905604 Msa0851520:CDS
GATCCATAATATGGTGTGAA+TGG 0.430360 5_4:+41905510 Msa0851520:CDS
CTCATGGCGCGAAACTAATA+GGG 0.443455 5_4:+41905871 Msa0851520:CDS
TAGCAAAAGTGTTGAAGAAT+CGG 0.443544 5_4:+41904726 Msa0851520:CDS
TAGCAGAAGTGTTGAAGAAT+CGG 0.450364 5_4:+41904756 Msa0851520:CDS
TGCTTAGTGTCACATCTTCA+AGG 0.456299 5_4:+41905335 Msa0851520:CDS
AGCAGATCATCTTGCAAAGA+TGG 0.464394 5_4:+41905895 Msa0851520:CDS
AATAAGTTTGAGATATCATA+AGG 0.465396 5_4:-41906205 None:intergenic
AAAGGACAAAGCAAAGTAAT+CGG 0.468833 5_4:-41902835 None:intergenic
CATCAGGGTAGAGATGATCT+TGG 0.468875 5_4:+41905209 Msa0851520:intron
TGGAAACATACTTTCTGAAT+CGG 0.481170 5_4:+41904666 Msa0851520:CDS
AAAAGAAAGTCCAGAAGGAA+TGG 0.482543 5_4:+41905273 Msa0851520:CDS
CATACTTTCTGAATCGGATA+CGG 0.483563 5_4:+41904672 Msa0851520:CDS
CTTGCAAAGATGGCTGTTTG+TGG 0.484608 5_4:+41905905 Msa0851520:CDS
TTCGTTATTGCAGGCTCCCA+TGG 0.484694 5_4:+41904470 Msa0851520:intron
TGAGTAAGTTTGATGAGTCT+CGG 0.487445 5_4:+41905840 Msa0851520:CDS
GGAAAGAAATAATGAGGTAA+AGG 0.490784 5_4:-41906231 None:intergenic
TCAAGGAGATACTTTCTTGG+TGG 0.510759 5_4:+41905661 Msa0851520:CDS
TGCGTAAAGGTTAGAACATA+CGG 0.511440 5_4:-41905416 None:intergenic
TTTGATTCTTTCCTGCGTAA+AGG 0.512755 5_4:-41905429 None:intergenic
TCTGTAAATAAAGAAACAGC+TGG 0.514986 5_4:+41905575 Msa0851520:CDS
AAGCGCGTTGTTGCATTGTA+CGG 0.519310 5_4:-41902521 None:intergenic
TCTTGGGATAAAATCAATAT+GGG 0.519546 5_4:+41905724 Msa0851520:CDS
TAATTAAACGCTACTGTACT+GGG 0.522290 5_4:+41904572 Msa0851520:CDS
GATTGTCTTCACAACACTCA+TGG 0.524206 5_4:-41905759 None:intergenic
TACCATCTGAACGGAGTTGG+TGG 0.537300 5_4:+41906031 Msa0851520:three_prime_UTR
ATATGTTTCTATTCGGACGT+TGG 0.539419 5_4:+41902948 Msa0851520:CDS
ATGAGTTGTAATAATTGTCT+GGG 0.545208 5_4:-41904809 None:intergenic
AAGTGTTGGTATACCAGGAA+AGG 0.550194 5_4:-41902689 None:intergenic
CTCCACCAACTCCGTTCAGA+TGG 0.552749 5_4:-41906033 None:intergenic
ATACTTTCTGAATCGGATAC+GGG 0.559997 5_4:+41904673 Msa0851520:CDS
ACCCAATGAAAGCCGAAGGA+AGG 0.563675 5_4:+41902460 None:intergenic
GGAACATATGTGCATGGACG+AGG 0.565127 5_4:+41904593 Msa0851520:CDS
GCTTAGTGTCACATCTTCAA+GGG 0.567599 5_4:+41905336 Msa0851520:CDS
AGTTACCATCTGAACGGAGT+TGG 0.577250 5_4:+41906028 Msa0851520:three_prime_UTR
TTCTTTATTTACAGAACCGT+CGG 0.577442 5_4:-41905567 None:intergenic
AGTCTCGGATTTCTCACTCA+TGG 0.579409 5_4:+41905855 Msa0851520:CDS
GGCTGTTTGTGGAAATGATG+TGG 0.583486 5_4:+41905916 Msa0851520:CDS
AGGGAAGCAACACAAGGCTA+AGG 0.587634 5_4:+41905355 Msa0851520:CDS
TAACAATAGGATAGTTGCCA+CGG 0.590991 5_4:-41904509 None:intergenic
CTTTCACATGAGACCACCAT+GGG 0.591708 5_4:-41904486 None:intergenic
GTTGGTATACCAGGAAAGGA+TGG 0.591926 5_4:-41902685 None:intergenic
AATCAACTACAGAAAACCAT+AGG 0.600606 5_4:+41906064 Msa0851520:three_prime_UTR
TTTACGCAGGAAAGAATCAA+AGG 0.603606 5_4:+41905431 Msa0851520:CDS
CAAGACCTAAAGAGAGAACA+AGG 0.605269 5_4:-41905706 None:intergenic
CGTCTTGAATGATATTGCAA+AGG 0.607459 5_4:-41905967 None:intergenic
TTTGTCTCGAAAGCTCCTCA+AGG 0.608294 5_4:+41905644 Msa0851520:CDS
GCAGGAAAGAATCAAAGGAA+TGG 0.612015 5_4:+41905436 Msa0851520:CDS
AGAAACCCAATGAAAGCCGA+AGG 0.619539 5_4:+41902456 None:intergenic
GAACTTTGGGCTATATGGAG+AGG 0.625001 5_4:+41905683 Msa0851520:CDS
GTATGTTCTAACCTTTACGC+AGG 0.643436 5_4:+41905418 Msa0851520:CDS
GTTTGCAGTTACCATCTGAA+CGG 0.645168 5_4:+41906022 Msa0851520:three_prime_UTR
GTTATTGCAGGCTCCCATGG+TGG 0.653020 5_4:+41904473 Msa0851520:intron
GTACTGGGAACATATGTGCA+TGG 0.660204 5_4:+41904587 Msa0851520:CDS
ACCAAGAAAGTATCTCCTTG+AGG 0.666708 5_4:-41905659 None:intergenic
TCTTCAAGGGAAGCAACACA+AGG 0.671841 5_4:+41905349 Msa0851520:CDS
GGACAAAGCAAAGTAATCGG+AGG 0.679495 5_4:-41902832 None:intergenic
ATCATTCAAGACGATGCCAG+AGG 0.688719 5_4:+41905977 Msa0851520:CDS
TGGACAAAACTAAATACCGA+CGG 0.689514 5_4:+41905551 Msa0851520:CDS
GCTTTCACATGAGACCACCA+TGG 0.703420 5_4:-41904487 None:intergenic
GTGGTCTCATGTGAAAGCCG+TGG 0.720187 5_4:+41904492 Msa0851520:CDS
GGTCTGCTTCGTGATTATCG+GGG 0.768767 5_4:+41905605 Msa0851520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAAAAAAATGGATT+CGG + chr5_4:41902623-41902642 Msa0851520:exon 10.0%
!! ATAAATAAAATTACTTACAA+AGG - chr5_4:41902856-41902875 None:intergenic 10.0%
!! TAAAAAAAAAGCAACATTAT+AGG - chr5_4:41902750-41902769 None:intergenic 15.0%
!!! TTTTTATTTTTGTTACATAC+AGG + chr5_4:41902809-41902828 Msa0851520:intron 15.0%
!! TTAACTATAACAATGAAATT+TGG + chr5_4:41903526-41903545 Msa0851520:intron 15.0%
!! TTATTATTGAAAATCAAGTA+TGG + chr5_4:41903555-41903574 Msa0851520:intron 15.0%
!! TATTATTGAAAATCAAGTAT+GGG + chr5_4:41903556-41903575 Msa0851520:intron 15.0%
!! AATGATTAAAGATAATTGTT+GGG - chr5_4:41903747-41903766 None:intergenic 15.0%
!! TAATGATTAAAGATAATTGT+TGG - chr5_4:41903748-41903767 None:intergenic 15.0%
!! TAAAATGATAAATGTGTATT+TGG - chr5_4:41904985-41905004 None:intergenic 15.0%
!!! ATTTTCAGACTATGTATAAT+TGG - chr5_4:41903135-41903154 None:intergenic 20.0%
!!! AAATGTCCAATGTTAAATTT+TGG + chr5_4:41903151-41903170 Msa0851520:intron 20.0%
!! TTTGACAAATTCAAAAACTA+CGG - chr5_4:41903224-41903243 None:intergenic 20.0%
!!! ATCTACTGTTAGTAATTTTA+TGG - chr5_4:41903349-41903368 None:intergenic 20.0%
!!! AAAAGAGTAAACAAACATTT+TGG - chr5_4:41903441-41903460 None:intergenic 20.0%
!!! TTACTCTTTTAACATTGAAT+TGG + chr5_4:41903451-41903470 Msa0851520:intron 20.0%
!!! TACTCTTTTAACATTGAATT+GGG + chr5_4:41903452-41903471 Msa0851520:intron 20.0%
!! ATTATTGAAAATCAAGTATG+GGG + chr5_4:41903557-41903576 Msa0851520:intron 20.0%
!!! TTTTATTTTCTTGTAGTTGT+AGG + chr5_4:41903898-41903917 Msa0851520:intron 20.0%
!!! CAAAATAAGGTATTAACAAT+AGG - chr5_4:41904525-41904544 None:intergenic 20.0%
!!! CTATTGTTAATACCTTATTT+TGG + chr5_4:41904523-41904542 Msa0851520:CDS 20.0%
!! ATAACATTAATTTCTACCTA+TGG - chr5_4:41906083-41906102 None:intergenic 20.0%
!!! AATAAGTTTGAGATATCATA+AGG - chr5_4:41906208-41906227 None:intergenic 20.0%
!! TATGATATCTCAAACTTATT+TGG + chr5_4:41906208-41906227 Msa0851520:three_prime_UTR 20.0%
! TCTATCTTTCTTTACCATTA+AGG + chr5_4:41902552-41902571 Msa0851520:five_prime_UTR 25.0%
!! AAAAAAAAATGGATTCGGAA+TGG + chr5_4:41902628-41902647 Msa0851520:exon 25.0%
!! AAAAAAAATGGATTCGGAAT+GGG + chr5_4:41902629-41902648 Msa0851520:exon 25.0%
!! AAAAGAAAAGAAAGAAGTGT+TGG - chr5_4:41902706-41902725 None:intergenic 25.0%
!!! AATTTGCAGTGTTATTTACT+TGG + chr5_4:41903049-41903068 Msa0851520:CDS 25.0%
!! ATCTGAGTAAACAAACATTT+TGG + chr5_4:41903175-41903194 Msa0851520:intron 25.0%
!! ACTCTTTTAACATTGAATTG+GGG + chr5_4:41903453-41903472 Msa0851520:intron 25.0%
! ACTAAGAATAAGCAAAATTG+AGG + chr5_4:41903599-41903618 Msa0851520:intron 25.0%
! ATATATGCAATAATGCCTTA+AGG + chr5_4:41903644-41903663 Msa0851520:intron 25.0%
! ATACTAAATTATGCAATGTC+AGG - chr5_4:41904135-41904154 None:intergenic 25.0%
!! AGAAGGAACAAAAACAATTT+TGG + chr5_4:41904306-41904325 Msa0851520:intron 25.0%
!! GAAGGAACAAAAACAATTTT+GGG + chr5_4:41904307-41904326 Msa0851520:intron 25.0%
!!! CAGAAAAGCATTTTTAGAAT+CGG + chr5_4:41904696-41904715 Msa0851520:CDS 25.0%
! ATGAGTTGTAATAATTGTCT+GGG - chr5_4:41904812-41904831 None:intergenic 25.0%
! AATGAGTTGTAATAATTGTC+TGG - chr5_4:41904813-41904832 None:intergenic 25.0%
!! GAAGAAACTTTTAGTATATC+AGG + chr5_4:41904840-41904859 Msa0851520:CDS 25.0%
!! AACTTTTAGTATATCAGGTA+TGG + chr5_4:41904845-41904864 Msa0851520:intron 25.0%
!! ACTTTTAGTATATCAGGTAT+GGG + chr5_4:41904846-41904865 Msa0851520:intron 25.0%
!! TAACCCATATGATGATTTTA+AGG + chr5_4:41904908-41904927 Msa0851520:intron 25.0%
! AAGCCTTAAAATCATCATAT+GGG - chr5_4:41904914-41904933 None:intergenic 25.0%
! AAAGCCTTAAAATCATCATA+TGG - chr5_4:41904915-41904934 None:intergenic 25.0%
! ATTCGTATCACAAATTTACA+TGG + chr5_4:41905044-41905063 Msa0851520:intron 25.0%
! ACAAATTTACATGGATGTTA+TGG + chr5_4:41905053-41905072 Msa0851520:intron 25.0%
! GATTCAGAATATTTGCAATT+TGG - chr5_4:41905481-41905500 None:intergenic 25.0%
! TCTTGGGATAAAATCAATAT+GGG + chr5_4:41905724-41905743 Msa0851520:CDS 25.0%
TTTCTTTACCATTAAGGCTT+CGG + chr5_4:41902558-41902577 Msa0851520:five_prime_UTR 30.0%
AAAGGACAAAGCAAAGTAAT+CGG - chr5_4:41902838-41902857 None:intergenic 30.0%
! GTTGCAGATATGTTTCTATT+CGG + chr5_4:41902941-41902960 Msa0851520:intron 30.0%
!!! ATCAACGATGTCTTGTTTTT+TGG + chr5_4:41902992-41903011 Msa0851520:CDS 30.0%
!!! TCAACGATGTCTTGTTTTTT+GGG + chr5_4:41902993-41903012 Msa0851520:CDS 30.0%
CAGATGCCAAAATTTAACAT+TGG - chr5_4:41903160-41903179 None:intergenic 30.0%
ACTAACAAAAGACACATTCA+AGG - chr5_4:41903285-41903304 None:intergenic 30.0%
TACTAACAGTAGATACATTG+AGG + chr5_4:41903355-41903374 Msa0851520:intron 30.0%
ACTAACAGTAGATACATTGA+GGG + chr5_4:41903356-41903375 Msa0851520:intron 30.0%
GGATGTTAAAAGTGATATCA+AGG + chr5_4:41903474-41903493 Msa0851520:intron 30.0%
!!! AGTTTTAGTTATCAGCCTAT+TGG + chr5_4:41903707-41903726 Msa0851520:intron 30.0%
GTCTAGAAAAACATTCAAGT+GGG - chr5_4:41903940-41903959 None:intergenic 30.0%
TGTCTAGAAAAACATTCAAG+TGG - chr5_4:41903941-41903960 None:intergenic 30.0%
TTAAATATTGGTCACCATAG+TGG + chr5_4:41903981-41904000 Msa0851520:intron 30.0%
! CATTTTAAGCAGCCATAAAA+CGG - chr5_4:41904068-41904087 None:intergenic 30.0%
ATAAAGTTAAGAGTCTGAGT+AGG + chr5_4:41904251-41904270 Msa0851520:intron 30.0%
AAACTAGACACAAAATCAGA+AGG + chr5_4:41904289-41904308 Msa0851520:intron 30.0%
! CATTTTGAATTCGTTATTGC+AGG + chr5_4:41904461-41904480 Msa0851520:intron 30.0%
ATTAAGAGCTTGTAGATGTA+TGG - chr5_4:41904556-41904575 None:intergenic 30.0%
TTAATTAAACGCTACTGTAC+TGG + chr5_4:41904571-41904590 Msa0851520:CDS 30.0%
TAATTAAACGCTACTGTACT+GGG + chr5_4:41904572-41904591 Msa0851520:CDS 30.0%
! TGTGATTTTCAGATTGAAGA+TGG - chr5_4:41904626-41904645 None:intergenic 30.0%
TGGAAACATACTTTCTGAAT+CGG + chr5_4:41904666-41904685 Msa0851520:CDS 30.0%
!!! AAAGCATTTTTAGAATCGGA+TGG + chr5_4:41904700-41904719 Msa0851520:CDS 30.0%
!! TAGCAAAAGTGTTGAAGAAT+CGG + chr5_4:41904726-41904745 Msa0851520:CDS 30.0%
! AAATGTGTATTTGGAGTTGA+TGG - chr5_4:41904976-41904995 None:intergenic 30.0%
ACACGATGATTAGCATTAAT+TGG - chr5_4:41905100-41905119 None:intergenic 30.0%
TAAGAAAGTTGTTTGCATCA+GGG + chr5_4:41905194-41905213 Msa0851520:intron 30.0%
AAGTAAAAAGAAAGTCCAGA+AGG + chr5_4:41905268-41905287 Msa0851520:CDS 30.0%
CATATTATGGATCTAGAAAC+TGG - chr5_4:41905503-41905522 None:intergenic 30.0%
! CAGTTTCTAGATCCATAATA+TGG + chr5_4:41905501-41905520 Msa0851520:CDS 30.0%
TTTCCATTCACACCATATTA+TGG - chr5_4:41905516-41905535 None:intergenic 30.0%
! TTCTTTATTTACAGAACCGT+CGG - chr5_4:41905570-41905589 None:intergenic 30.0%
TCTGTAAATAAAGAAACAGC+TGG + chr5_4:41905575-41905594 Msa0851520:CDS 30.0%
!! AATAAAGAAACAGCTGGTTT+TGG + chr5_4:41905581-41905600 Msa0851520:CDS 30.0%
GTCTTGGGATAAAATCAATA+TGG + chr5_4:41905723-41905742 Msa0851520:CDS 30.0%
AAACCTGTGTGAAAAAAATC+TGG + chr5_4:41905810-41905829 Msa0851520:CDS 30.0%
!!! TTTCCAGATTTTTTTCACAC+AGG - chr5_4:41905816-41905835 None:intergenic 30.0%
! TCTTAGATATTTTGTTCCTC+TGG - chr5_4:41905996-41906015 None:intergenic 30.0%
AATCAACTACAGAAAACCAT+AGG + chr5_4:41906064-41906083 Msa0851520:three_prime_UTR 30.0%
ATGTTATAGCTTCCATTTAG+TGG + chr5_4:41906096-41906115 Msa0851520:three_prime_UTR 30.0%
ATGTCAACTTAACCACTAAA+TGG - chr5_4:41906111-41906130 None:intergenic 30.0%
!! AAGCTGTATTGACTGACTTA+TGG + chr5_4:41902483-41902502 Msa0851520:five_prime_UTR 35.0%
! ATATGTTTCTATTCGGACGT+TGG + chr5_4:41902948-41902967 Msa0851520:CDS 35.0%
! GACATTTTCTCTCACATTTG+TGG + chr5_4:41903414-41903433 Msa0851520:intron 35.0%
! GCAATAATGCCTTAAGGTTT+TGG + chr5_4:41903650-41903669 Msa0851520:intron 35.0%
!!! TAATGCCTTAAGGTTTTGGA+TGG + chr5_4:41903654-41903673 Msa0851520:intron 35.0%
! GATAATTGTTGGGTTGTCAA+GGG - chr5_4:41903737-41903756 None:intergenic 35.0%
! AGATAATTGTTGGGTTGTCA+AGG - chr5_4:41903738-41903757 None:intergenic 35.0%
! TGACCAGTGCTGTTAAATAT+TGG + chr5_4:41903969-41903988 Msa0851520:intron 35.0%
TGACCAATATTTAACAGCAC+TGG - chr5_4:41903975-41903994 None:intergenic 35.0%
! CGTTTTATGGCTGCTTAAAA+TGG + chr5_4:41904066-41904085 Msa0851520:intron 35.0%
TTTATGGCTGCTTAAAATGG+CGG + chr5_4:41904069-41904088 Msa0851520:intron 35.0%
TATAGCATTCACATGCATGT+TGG + chr5_4:41904152-41904171 Msa0851520:intron 35.0%
ATGCTCAAAAGCAATACCAA+AGG - chr5_4:41904181-41904200 None:intergenic 35.0%
AGCTAGGTTGTGAAAGAAAA+AGG + chr5_4:41904338-41904357 Msa0851520:intron 35.0%
TAACAATAGGATAGTTGCCA+CGG - chr5_4:41904512-41904531 None:intergenic 35.0%
CATACTTTCTGAATCGGATA+CGG + chr5_4:41904672-41904691 Msa0851520:CDS 35.0%
ATACTTTCTGAATCGGATAC+GGG + chr5_4:41904673-41904692 Msa0851520:CDS 35.0%
!! TAGCAGAAGTGTTGAAGAAT+CGG + chr5_4:41904756-41904775 Msa0851520:CDS 35.0%
! TTAATTGGTCTCCTTGTATG+TGG - chr5_4:41905085-41905104 None:intergenic 35.0%
CTAAGAAAGTTGTTTGCATC+AGG + chr5_4:41905193-41905212 Msa0851520:intron 35.0%
AAAAGAAAGTCCAGAAGGAA+TGG + chr5_4:41905273-41905292 Msa0851520:CDS 35.0%
AAGGAAAAAGAACTTCGAGT+CGG + chr5_4:41905374-41905393 Msa0851520:CDS 35.0%
TGCGTAAAGGTTAGAACATA+CGG - chr5_4:41905419-41905438 None:intergenic 35.0%
TTTGATTCTTTCCTGCGTAA+AGG - chr5_4:41905432-41905451 None:intergenic 35.0%
TTTACGCAGGAAAGAATCAA+AGG + chr5_4:41905431-41905450 Msa0851520:CDS 35.0%
GATCCATAATATGGTGTGAA+TGG + chr5_4:41905510-41905529 Msa0851520:CDS 35.0%
TGGACAAAACTAAATACCGA+CGG + chr5_4:41905551-41905570 Msa0851520:CDS 35.0%
ATACTTTCTTGGTGGAACTT+TGG + chr5_4:41905669-41905688 Msa0851520:CDS 35.0%
TACTTTCTTGGTGGAACTTT+GGG + chr5_4:41905670-41905689 Msa0851520:CDS 35.0%
TTGTTCTCTCTTTAGGTCTT+GGG + chr5_4:41905708-41905727 Msa0851520:CDS 35.0%
TGAGTAAGTTTGATGAGTCT+CGG + chr5_4:41905840-41905859 Msa0851520:CDS 35.0%
CGTCTTGAATGATATTGCAA+AGG - chr5_4:41905970-41905989 None:intergenic 35.0%
TCAATACAGCTTCCTTCCTT+CGG - chr5_4:41902475-41902494 None:intergenic 40.0%
! TTTTCACTCCGAAGCCTTAA+TGG - chr5_4:41902569-41902588 None:intergenic 40.0%
!! AAGTGTTGGTATACCAGGAA+AGG - chr5_4:41902692-41902711 None:intergenic 40.0%
!! GAAAGAAGTGTTGGTATACC+AGG - chr5_4:41902697-41902716 None:intergenic 40.0%
CATCTCCATCCAAAACCTTA+AGG - chr5_4:41903662-41903681 None:intergenic 40.0%
CATCCTTCACAAATTGGCAA+TGG - chr5_4:41904035-41904054 None:intergenic 40.0%
CATTGCCAATTTGTGAAGGA+TGG + chr5_4:41904033-41904052 Msa0851520:intron 40.0%
ATCCACCATCCTTCACAAAT+TGG - chr5_4:41904041-41904060 None:intergenic 40.0%
TTACTTTCTGCCATCCGAAA+TGG + chr5_4:41904098-41904117 Msa0851520:intron 40.0%
AGGAGCAGTGTTATCCATTT+CGG - chr5_4:41904115-41904134 None:intergenic 40.0%
CTCAGAACAATCATCATCAC+TGG + chr5_4:41904389-41904408 Msa0851520:intron 40.0%
! CACACATTTTGAATTGAGCG+AGG + chr5_4:41904642-41904661 Msa0851520:CDS 40.0%
! CATTTTGAATTGAGCGAGGA+TGG + chr5_4:41904646-41904665 Msa0851520:CDS 40.0%
TATGGTAATCGCCACATACA+AGG + chr5_4:41905071-41905090 Msa0851520:intron 40.0%
TGCTAATCATCGTGTCACAT+AGG + chr5_4:41905105-41905124 Msa0851520:intron 40.0%
AGGATATACACCACAAGACT+TGG + chr5_4:41905125-41905144 Msa0851520:intron 40.0%
GGATATACACCACAAGACTT+GGG + chr5_4:41905126-41905145 Msa0851520:intron 40.0%
GATATACACCACAAGACTTG+GGG + chr5_4:41905127-41905146 Msa0851520:intron 40.0%
TGCTTAGTGTCACATCTTCA+AGG + chr5_4:41905335-41905354 Msa0851520:CDS 40.0%
GCTTAGTGTCACATCTTCAA+GGG + chr5_4:41905336-41905355 Msa0851520:CDS 40.0%
AGGAAAAAGAACTTCGAGTC+GGG + chr5_4:41905375-41905394 Msa0851520:CDS 40.0%
GTATGTTCTAACCTTTACGC+AGG + chr5_4:41905418-41905437 Msa0851520:CDS 40.0%
GCAGGAAAGAATCAAAGGAA+TGG + chr5_4:41905436-41905455 Msa0851520:CDS 40.0%
ATGGTGTGAATGGAAAAAGC+CGG + chr5_4:41905520-41905539 Msa0851520:CDS 40.0%
GAATGGAAAAAGCCGGAATT+CGG + chr5_4:41905527-41905546 Msa0851520:CDS 40.0%
!! AGTTTTGTCCATCCGAATTC+CGG - chr5_4:41905542-41905561 None:intergenic 40.0%
!!! AAAGAAACAGCTGGTTTTGG+TGG + chr5_4:41905584-41905603 Msa0851520:CDS 40.0%
TTCGAGACAAATGCGCAAAT+TGG - chr5_4:41905635-41905654 None:intergenic 40.0%
TCCTCAAGGAGATACTTTCT+TGG + chr5_4:41905658-41905677 Msa0851520:CDS 40.0%
!! ACCAAGAAAGTATCTCCTTG+AGG - chr5_4:41905662-41905681 None:intergenic 40.0%
TCAAGGAGATACTTTCTTGG+TGG + chr5_4:41905661-41905680 Msa0851520:CDS 40.0%
CAAGACCTAAAGAGAGAACA+AGG - chr5_4:41905709-41905728 None:intergenic 40.0%
CTTGTTCTCTCTTTAGGTCT+TGG + chr5_4:41905707-41905726 Msa0851520:CDS 40.0%
GATTGTCTTCACAACACTCA+TGG - chr5_4:41905762-41905781 None:intergenic 40.0%
! TTCACACAGGTTTCAGCTTT+TGG - chr5_4:41905803-41905822 None:intergenic 40.0%
AGCAGATCATCTTGCAAAGA+TGG + chr5_4:41905895-41905914 Msa0851520:CDS 40.0%
!! GTGGAAATGATGTGGTTTTG+TGG + chr5_4:41905924-41905943 Msa0851520:CDS 40.0%
AGGCTATGTGAAAAATCAGC+TGG - chr5_4:41905950-41905969 None:intergenic 40.0%
GTTTGCAGTTACCATCTGAA+CGG + chr5_4:41906022-41906041 Msa0851520:three_prime_UTR 40.0%
AAGCGCGTTGTTGCATTGTA+CGG - chr5_4:41902524-41902543 None:intergenic 45.0%
AATCACTCACCATCCTTTCC+TGG + chr5_4:41902676-41902695 Msa0851520:CDS 45.0%
GTTGGTATACCAGGAAAGGA+TGG - chr5_4:41902688-41902707 None:intergenic 45.0%
GGACAAAGCAAAGTAATCGG+AGG - chr5_4:41902835-41902854 None:intergenic 45.0%
GTGACAACGTGACACATTCA+AGG - chr5_4:41903202-41903221 None:intergenic 45.0%
GTAGCTTCTTGATTGCTACG+AGG + chr5_4:41903823-41903842 Msa0851520:intron 45.0%
TACGAGGTTGACTACTAGCT+TGG + chr5_4:41903839-41903858 Msa0851520:intron 45.0%
!! TAACAGCACTGGTCAAGACT+TGG - chr5_4:41903964-41903983 None:intergenic 45.0%
!! TTGGTCACCATAGTGGATTG+CGG + chr5_4:41903988-41904007 Msa0851520:intron 45.0%
CCTTCACAAATTGGCAATGG+CGG - chr5_4:41904032-41904051 None:intergenic 45.0%
TGCCAATTTGTGAAGGATGG+TGG + chr5_4:41904036-41904055 Msa0851520:intron 45.0%
!!! TGGTGGATCATGCCGTTTTA+TGG + chr5_4:41904053-41904072 Msa0851520:intron 45.0%
GCAGTGTTATCCATTTCGGA+TGG - chr5_4:41904111-41904130 None:intergenic 45.0%
!! ACATGCATGTTGGCTTCCTT+TGG + chr5_4:41904162-41904181 Msa0851520:intron 45.0%
!! ATTTTGGGTCAAGAGCAGCT+AGG + chr5_4:41904322-41904341 Msa0851520:intron 45.0%
CTTTCACATGAGACCACCAT+GGG - chr5_4:41904489-41904508 None:intergenic 45.0%
TATGGCGCAGCACCAAAATA+AGG - chr5_4:41904538-41904557 None:intergenic 45.0%
GTACTGGGAACATATGTGCA+TGG + chr5_4:41904587-41904606 Msa0851520:CDS 45.0%
CATCAGGGTAGAGATGATCT+TGG + chr5_4:41905209-41905228 Msa0851520:intron 45.0%
AAGCACAACTCCATTCCTTC+TGG - chr5_4:41905286-41905305 None:intergenic 45.0%
TCTTCAAGGGAAGCAACACA+AGG + chr5_4:41905349-41905368 Msa0851520:CDS 45.0%
GTGGTCTGCTTCGTGATTAT+CGG + chr5_4:41905603-41905622 Msa0851520:CDS 45.0%
TGGTCTGCTTCGTGATTATC+GGG + chr5_4:41905604-41905623 Msa0851520:CDS 45.0%
TTTGTCTCGAAAGCTCCTCA+AGG + chr5_4:41905644-41905663 Msa0851520:CDS 45.0%
TGGTGGAACTTTGGGCTATA+TGG + chr5_4:41905678-41905697 Msa0851520:CDS 45.0%
GAACTTTGGGCTATATGGAG+AGG + chr5_4:41905683-41905702 Msa0851520:CDS 45.0%
!! AGAGGCCTTGTTCTCTCTTT+AGG + chr5_4:41905701-41905720 Msa0851520:CDS 45.0%
AGTCTCGGATTTCTCACTCA+TGG + chr5_4:41905855-41905874 Msa0851520:CDS 45.0%
ACTCATGGCGCGAAACTAAT+AGG + chr5_4:41905870-41905889 Msa0851520:CDS 45.0%
CTCATGGCGCGAAACTAATA+GGG + chr5_4:41905871-41905890 Msa0851520:CDS 45.0%
CTTGCAAAGATGGCTGTTTG+TGG + chr5_4:41905905-41905924 Msa0851520:CDS 45.0%
GGCTGTTTGTGGAAATGATG+TGG + chr5_4:41905916-41905935 Msa0851520:CDS 45.0%
ATCATTCAAGACGATGCCAG+AGG + chr5_4:41905977-41905996 Msa0851520:CDS 45.0%
AGTTACCATCTGAACGGAGT+TGG + chr5_4:41906028-41906047 Msa0851520:three_prime_UTR 45.0%
!! AATACAAAATAAAAAAAAAA+TGG + chr5_4:41902617-41902636 Msa0851520:exon 5.0%
GGAGATGTAGTGCTGTCTTG+TGG + chr5_4:41903675-41903694 Msa0851520:intron 50.0%
! GTTGTCAAGGGTGCACCAAT+AGG - chr5_4:41903725-41903744 None:intergenic 50.0%
CCGCCATTGCCAATTTGTGA+AGG + chr5_4:41904029-41904048 Msa0851520:intron 50.0%
TTCGTTATTGCAGGCTCCCA+TGG + chr5_4:41904470-41904489 Msa0851520:intron 50.0%
GCTTTCACATGAGACCACCA+TGG - chr5_4:41904490-41904509 None:intergenic 50.0%
GGAACATATGTGCATGGACG+AGG + chr5_4:41904593-41904612 Msa0851520:CDS 50.0%
AGGGAAGCAACACAAGGCTA+AGG + chr5_4:41905355-41905374 Msa0851520:CDS 50.0%
GGAAAAAGCCGGAATTCGGA+TGG + chr5_4:41905531-41905550 Msa0851520:CDS 50.0%
GGTCTGCTTCGTGATTATCG+GGG + chr5_4:41905605-41905624 Msa0851520:CDS 50.0%
TACCATCTGAACGGAGTTGG+TGG + chr5_4:41906031-41906050 Msa0851520:three_prime_UTR 50.0%
!! GTCACCATAGTGGATTGCGG+TGG + chr5_4:41903991-41904010 Msa0851520:intron 55.0%
ACTGCCACCGCAATCCACTA+TGG - chr5_4:41903998-41904017 None:intergenic 55.0%
GTTATTGCAGGCTCCCATGG+TGG + chr5_4:41904473-41904492 Msa0851520:intron 55.0%
GTGGTCTCATGTGAAAGCCG+TGG + chr5_4:41904492-41904511 Msa0851520:CDS 55.0%
GCATCTCTCCCCAAGTCTTG+TGG - chr5_4:41905138-41905157 None:intergenic 55.0%
CTCCACCAACTCCGTTCAGA+TGG - chr5_4:41906036-41906055 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 41902467 41906240 41902467 ID=Msa0851520;Name=Msa0851520
chr5_4 mRNA 41902467 41906240 41902467 ID=Msa0851520-mRNA-1;Parent=Msa0851520;Name=Msa0851520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|1|0.8|1|1|1|5|219|465
chr5_4 exon 41902467 41902697 41902467 ID=Msa0851520-mRNA-1:exon:13284;Parent=Msa0851520-mRNA-1
chr5_4 exon 41902831 41902857 41902831 ID=Msa0851520-mRNA-1:exon:13285;Parent=Msa0851520-mRNA-1
chr5_4 exon 41902948 41903070 41902948 ID=Msa0851520-mRNA-1:exon:13286;Parent=Msa0851520-mRNA-1
chr5_4 exon 41904483 41904861 41904483 ID=Msa0851520-mRNA-1:exon:13287;Parent=Msa0851520-mRNA-1
chr5_4 exon 41905215 41906240 41905215 ID=Msa0851520-mRNA-1:exon:13288;Parent=Msa0851520-mRNA-1
chr5_4 five_prime_UTR 41902467 41902635 41902467 ID=Msa0851520-mRNA-1:five_prime_utr;Parent=Msa0851520-mRNA-1
chr5_4 CDS 41902636 41902697 41902636 ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1
chr5_4 CDS 41902831 41902857 41902831 ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1
chr5_4 CDS 41902948 41903070 41902948 ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1
chr5_4 CDS 41904483 41904861 41904483 ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1
chr5_4 CDS 41905215 41906021 41905215 ID=Msa0851520-mRNA-1:cds;Parent=Msa0851520-mRNA-1
chr5_4 three_prime_UTR 41906022 41906240 41906022 ID=Msa0851520-mRNA-1:three_prime_utr;Parent=Msa0851520-mRNA-1
Gene Sequence

>Msa0851520

ATGGATTCGGAATGGGAAACTCTTCATATAATCTTAACAAAATCACTCACCATCCTTTCCTGGCCTCCGATTACTTTGCTTTGTCCTTTATATGTTTCTATTCGGACGTTGGAGAGTGATTGTCGTTACAGTAATCAACGATGTCTTGTTTTTTGGGTTCTCTTTGCTTTCTCACTGATCATTGAACGTGAATTTGCAGTGTTATTTACTTGGCTCCCATGGTGGTCTCATGTGAAAGCCGTGGCAACTATCCTATTGTTAATACCTTATTTTGGTGCTGCGCCATACATCTACAAGCTCTTAATTAAACGCTACTGTACTGGGAACATATGTGCATGGACGAGGACGATGACCATCTTCAATCTGAAAATCACACATTTTGAATTGAGCGAGGATGGAAACATACTTTCTGAATCGGATACGGGCAGAAAAGCATTTTTAGAATCGGATGGTAATAGCAAAAGTGTTGAAGAATCGGATGATAATAGCAGAAGTGTTGAAGAATCGGATGATAATAGCAAAAGTGTTGAAGTCTCTGCCCAGACAATTATTACAACTCATTTACAAGAGAAGAAACTTTTAGTATATCAGGGTAGAGATGATCTTGGAGCTGATTGTGACAAGACAAACAGCAGTTATTATACAAGTAAAAAGAAAGTCCAGAAGGAATGGAGTTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAGTGTCACATCTTCAAGGGAAGCAACACAAGGCTAAGGAAAAAGAACTTCGAGTCGGGTTACATGCAACGAATATACCGTATGTTCTAACCTTTACGCAGGAAAGAATCAAAGGAATGGTTCTACTTAAGAATCTCAACCAAATTGCAAATATTCTGAATCCAGTTTCTAGATCCATAATATGGTGTGAATGGAAAAAGCCGGAATTCGGATGGACAAAACTAAATACCGACGGTTCTGTAAATAAAGAAACAGCTGGTTTTGGTGGTCTGCTTCGTGATTATCGGGGTGAACCAATTTGCGCATTTGTCTCGAAAGCTCCTCAAGGAGATACTTTCTTGGTGGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCTTTAGGTCTTGGGATAAAATCAATATGGGTAGAGTCAGACTCCATGAGTGTTGTGAAGACAATCAATAAAATGCAACAATGTCCAAAAGCTGAAACCTGTGTGAAAAAAATCTGGAAACTCTTGAGTAAGTTTGATGAGTCTCGGATTTCTCACTCATGGCGCGAAACTAATAGGGCAGCAGATCATCTTGCAAAGATGGCTGTTTGTGGAAATGATGTGGTTTTGTGGCCAGCTGATTTTTCACATAGCCTTTGCAATATCATTCAAGACGATGCCAGAGGAACAAAATATCTAAGACTGTGA

Protein sequence

>Msa0851520

MDSEWETLHIILTKSLTILSWPPITLLCPLYVSIRTLESDCRYSNQRCLVFWVLFAFSLIIEREFAVLFTWLPWWSHVKAVATILLLIPYFGAAPYIYKLLIKRYCTGNICAWTRTMTIFNLKITHFELSEDGNILSESDTGRKAFLESDGNSKSVEESDDNSRSVEESDDNSKSVEVSAQTIITTHLQEKKLLVYQGRDDLGADCDKTNSSYYTSKKKVQKEWSCALCQISTTSENCLVSHLQGKQHKAKEKELRVGLHATNIPYVLTFTQERIKGMVLLKNLNQIANILNPVSRSIIWCEWKKPEFGWTKLNTDGSVNKETAGFGGLLRDYRGEPICAFVSKAPQGDTFLVELWAIWRGLVLSLGLGIKSIWVESDSMSVVKTINKMQQCPKAETCVKKIWKLLSKFDESRISHSWRETNRAADHLAKMAVCGNDVVLWPADFSHSLCNIIQDDARGTKYLRL*