Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773750 | sp|Q9S7V4|HA22A_ARATH | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 2.06e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773750 | A0A396HSG0 | 93.103 | 464 | 20 | 2 | 1 | 464 | 1 | 452 | 0.0 | 876 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055710 | Msa0773750 | 0.810023 | 1.416693e-50 | -8.615850e-47 |
| Msa0773750 | Msa0851520 | 0.863291 | 2.763702e-64 | -8.615850e-47 |
| Msa0773750 | Msa1360410 | 0.811894 | 5.572151e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773750 | MtrunA17_Chr5g0427761 | 93.103 | 464 | 20 | 2 | 1 | 464 | 1 | 452 | 0.0 | 876 |
| Msa0773750 | MtrunA17_Chr2g0281001 | 34.132 | 167 | 105 | 3 | 303 | 464 | 35 | 201 | 1.18e-20 | 90.1 |
| Msa0773750 | MtrunA17_Chr4g0049651 | 23.019 | 265 | 173 | 8 | 14 | 249 | 12 | 274 | 1.67e-16 | 82.0 |
| Msa0773750 | MtrunA17_Chr4g0060581 | 31.897 | 116 | 75 | 1 | 10 | 121 | 13 | 128 | 5.38e-16 | 75.9 |
| Msa0773750 | MtrunA17_Chr3g0097141 | 34.737 | 95 | 62 | 0 | 12 | 106 | 7 | 101 | 1.23e-14 | 71.6 |
| Msa0773750 | MtrunA17_Chr6g0480701 | 30.120 | 166 | 113 | 2 | 302 | 464 | 623 | 788 | 4.35e-14 | 74.7 |
| Msa0773750 | MtrunA17_Chr5g0416561 | 30.476 | 105 | 73 | 0 | 1 | 105 | 58 | 162 | 3.03e-12 | 66.2 |
| Msa0773750 | MtrunA17_Chr5g0443431 | 36.471 | 85 | 54 | 0 | 22 | 106 | 17 | 101 | 3.66e-12 | 64.3 |
| Msa0773750 | MtrunA17_Chr8g0386221 | 27.957 | 93 | 67 | 0 | 11 | 103 | 6 | 98 | 1.22e-11 | 61.6 |
| Msa0773750 | MtrunA17_Chr3g0132031 | 29.787 | 94 | 66 | 0 | 12 | 105 | 7 | 100 | 1.65e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773750 | AT1G74520.1 | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 2.09e-17 | 80.5 |
| Msa0773750 | AT1G74520.2 | 30.405 | 148 | 89 | 3 | 11 | 144 | 11 | 158 | 2.09e-17 | 80.5 |
| Msa0773750 | AT1G69700.1 | 28.369 | 141 | 97 | 1 | 11 | 151 | 13 | 149 | 8.24e-16 | 75.9 |
| Msa0773750 | AT2G42820.1 | 31.959 | 97 | 66 | 0 | 10 | 106 | 5 | 101 | 1.51e-13 | 68.9 |
| Msa0773750 | AT4G24960.1 | 31.707 | 82 | 56 | 0 | 22 | 103 | 17 | 98 | 7.38e-11 | 60.5 |
| Msa0773750 | AT5G62490.1 | 27.358 | 106 | 77 | 0 | 1 | 106 | 1 | 106 | 7.99e-11 | 61.2 |
Find 96 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATATCTCAAACTTATT+TGG | 0.127608 | 5_2:-49062749 | Msa0773750:three_prime_UTR |
| TTTCCATTCACACCATATTA+TGG | 0.214195 | 5_2:+49063444 | None:intergenic |
| GATTCAGAATATTTGCAATT+TGG | 0.215007 | 5_2:+49063479 | None:intergenic |
| AGAGGCCTTGTTCTCTCTTT+AGG | 0.218594 | 5_2:-49063256 | Msa0773750:CDS |
| TTCACACAGGTTTCAGCTTT+TGG | 0.219860 | 5_2:+49063157 | None:intergenic |
| ACTATCTTTCTTTACCATTA+AGG | 0.230255 | 5_2:-49066111 | Msa0773750:five_prime_UTR |
| CTATTGTTAATACCTTATTT+TGG | 0.243172 | 5_2:-49064434 | Msa0773750:CDS |
| CTTGTTCTCTCTTTAGGTCT+TGG | 0.247801 | 5_2:-49063250 | Msa0773750:CDS |
| GTGGTCTGCTTCGTGATTAT+CGG | 0.253798 | 5_2:-49063354 | Msa0773750:CDS |
| TGGTGGAACTTTGGGCTATA+TGG | 0.256656 | 5_2:-49063279 | Msa0773750:CDS |
| TACTTTCTTGGTGGAACTTT+GGG | 0.281464 | 5_2:-49063287 | Msa0773750:CDS |
| ATGTCAACTTAACCACTAAA+TGG | 0.290537 | 5_2:+49062849 | None:intergenic |
| GTCTTGGGATAAAATCAATA+TGG | 0.303390 | 5_2:-49063234 | Msa0773750:CDS |
| TTCGAGACAAATGCGCAAAT+TGG | 0.310319 | 5_2:+49063325 | None:intergenic |
| TTGTTCTCTCTTTAGGTCTT+GGG | 0.332936 | 5_2:-49063249 | Msa0773750:CDS |
| AATAAAGAAACAGCTGGTTT+TGG | 0.354908 | 5_2:-49063376 | Msa0773750:CDS |
| ATGTTATAGCTTCCATTTAG+TGG | 0.362109 | 5_2:-49062861 | Msa0773750:three_prime_UTR |
| GTTGCAGATATGTTTCTATT+CGG | 0.367407 | 5_2:-49065714 | Msa0773750:intron |
| TTAATTAAACGCTACTGTAC+TGG | 0.372209 | 5_2:-49064386 | Msa0773750:CDS |
| AATTTGCACTGTTATTTAGT+TGG | 0.374483 | 5_2:-49065606 | Msa0773750:intron |
| GGAAAGGATGGTGAGTGATT+TGG | 0.377104 | 5_2:+49065989 | None:intergenic |
| ATTAAGAGCTTGTAGATGTA+TGG | 0.379499 | 5_2:+49064404 | None:intergenic |
| AAGCACAACTCCATTCCTTC+TGG | 0.379728 | 5_2:+49063674 | None:intergenic |
| AAGCTGTATCGACTGACTTA+TGG | 0.382136 | 5_2:-49066178 | Msa0773750:five_prime_UTR |
| CATATTATGGATCTAGAAAC+TGG | 0.383191 | 5_2:+49063457 | None:intergenic |
| CAAAATAAGGTATTAACAAT+AGG | 0.384113 | 5_2:+49064435 | None:intergenic |
| TCCTCAAGGAGATACTTTCT+TGG | 0.388568 | 5_2:-49063299 | Msa0773750:CDS |
| TTTCTTTACCATTAAGGCTT+CGG | 0.389378 | 5_2:-49066105 | Msa0773750:five_prime_UTR |
| ATACTTTCTTGGTGGAACTT+TGG | 0.389611 | 5_2:-49063288 | Msa0773750:CDS |
| AATCACTCACCATCCTTTCC+TGG | 0.394996 | 5_2:-49065986 | Msa0773750:intron |
| AATGAGTTGTAATAATTGTC+TGG | 0.395962 | 5_2:+49064147 | None:intergenic |
| CAGTTTCTAGATCCATAATA+TGG | 0.399797 | 5_2:-49063456 | Msa0773750:CDS |
| TATGGCGCAGCACCAAAATA+AGG | 0.406936 | 5_2:+49064422 | None:intergenic |
| TCGATACAGCTTCCTTCCTT+CGG | 0.409580 | 5_2:+49066189 | None:intergenic |
| ATAACATTAATTTCTACCTA+TGG | 0.426049 | 5_2:+49062877 | None:intergenic |
| TGGTCTGCTTCGTGATTATC+GGG | 0.429907 | 5_2:-49063353 | Msa0773750:CDS |
| GATCCATAATATGGTGTGAA+TGG | 0.430360 | 5_2:-49063447 | Msa0773750:CDS |
| TAGCAAAAGTGTTGAAGAAT+CGG | 0.443544 | 5_2:-49064231 | Msa0773750:CDS |
| TAGCAGAAGTGTTGAAGAAT+CGG | 0.450364 | 5_2:-49064201 | Msa0773750:CDS |
| TGCTTAGTGTCACATCTTCA+AGG | 0.456299 | 5_2:-49063622 | Msa0773750:CDS |
| AGCAGATCATCTTGCAAAGA+TGG | 0.464394 | 5_2:-49063062 | Msa0773750:CDS |
| AATAAGTTTGAGATATCATA+AGG | 0.465396 | 5_2:+49062752 | None:intergenic |
| AAAGGACAAAGCAAAGTAAT+CGG | 0.468833 | 5_2:+49065824 | None:intergenic |
| CATCAGGGTAGAGATGATCT+TGG | 0.468875 | 5_2:-49063748 | Msa0773750:intron |
| TGGAAACATACTTTCTGAAT+CGG | 0.481170 | 5_2:-49064291 | Msa0773750:CDS |
| AAAAGAAAGTCCAGAAGGAA+TGG | 0.482543 | 5_2:-49063684 | Msa0773750:CDS |
| CATACTTTCTGAATCGGATA+CGG | 0.483563 | 5_2:-49064285 | Msa0773750:CDS |
| CTTGCAAAGATGGCTGTTTG+TGG | 0.484608 | 5_2:-49063052 | Msa0773750:CDS |
| TTCGTTATTGCAGGCTCCCA+TGG | 0.484694 | 5_2:-49064487 | Msa0773750:intron |
| TGAGTAAGTTTGATGAGTCT+CGG | 0.487445 | 5_2:-49063117 | Msa0773750:CDS |
| GGAAAGAAATAATGAGGTAA+AGG | 0.490784 | 5_2:+49062726 | None:intergenic |
| TCAAGGAGATACTTTCTTGG+TGG | 0.510759 | 5_2:-49063296 | Msa0773750:CDS |
| TGCGTAAAGGTTAGAACATA+CGG | 0.511440 | 5_2:+49063541 | None:intergenic |
| TTTGATTCTTTCCTGCGTAA+AGG | 0.512755 | 5_2:+49063528 | None:intergenic |
| TCTGTAAATAAAGAAACAGC+TGG | 0.514986 | 5_2:-49063382 | Msa0773750:CDS |
| AAGCGCGTTGTTGCATTGTA+CGG | 0.519310 | 5_2:+49066140 | None:intergenic |
| TCTTGGGATAAAATCAATAT+GGG | 0.519546 | 5_2:-49063233 | Msa0773750:CDS |
| TAATTAAACGCTACTGTACT+GGG | 0.522290 | 5_2:-49064385 | Msa0773750:CDS |
| GATTGTCTTCACAACACTCA+TGG | 0.524206 | 5_2:+49063198 | None:intergenic |
| TACCATCTGAACGGAGTTGG+TGG | 0.537300 | 5_2:-49062926 | Msa0773750:three_prime_UTR |
| ATATGTTTCTATTCGGACGT+TGG | 0.539419 | 5_2:-49065707 | Msa0773750:CDS |
| ATGAGTTGTAATAATTGTCT+GGG | 0.545208 | 5_2:+49064148 | None:intergenic |
| CTCCACCAACTCCGTTCAGA+TGG | 0.552749 | 5_2:+49062924 | None:intergenic |
| ATACTTTCTGAATCGGATAC+GGG | 0.559997 | 5_2:-49064284 | Msa0773750:CDS |
| ACCCAATGAAAGCCGAAGGA+AGG | 0.563675 | 5_2:-49066201 | None:intergenic |
| GGAACATATGTGCATGGACG+AGG | 0.565127 | 5_2:-49064364 | Msa0773750:CDS |
| TGTTAGTATAATACCAGGAA+AGG | 0.565669 | 5_2:+49065973 | None:intergenic |
| GCTTAGTGTCACATCTTCAA+GGG | 0.567599 | 5_2:-49063621 | Msa0773750:CDS |
| AGTTACCATCTGAACGGAGT+TGG | 0.577250 | 5_2:-49062929 | Msa0773750:three_prime_UTR |
| TTCTTTATTTACAGAACCGT+CGG | 0.577442 | 5_2:+49063390 | None:intergenic |
| AGTCTCGGATTTCTCACTCA+TGG | 0.579409 | 5_2:-49063102 | Msa0773750:CDS |
| GGCTGTTTGTGGAAATGATG+TGG | 0.583486 | 5_2:-49063041 | Msa0773750:CDS |
| AGTATAATACCAGGAAAGGA+TGG | 0.586370 | 5_2:+49065977 | None:intergenic |
| AGGGAAGCAACACAAGGCTA+AGG | 0.587634 | 5_2:-49063602 | Msa0773750:CDS |
| TAACAATAGGATAGTTGCCA+CGG | 0.590991 | 5_2:+49064448 | None:intergenic |
| CTTTCACATGAGACCACCAT+GGG | 0.591708 | 5_2:+49064471 | None:intergenic |
| AATCAACTACAGAAAACCAT+AGG | 0.600606 | 5_2:-49062893 | Msa0773750:three_prime_UTR |
| TTTACGCAGGAAAGAATCAA+AGG | 0.603606 | 5_2:-49063526 | Msa0773750:CDS |
| CAAGACCTAAAGAGAGAACA+AGG | 0.605269 | 5_2:+49063251 | None:intergenic |
| CGTCTTGAATGATATTGCAA+AGG | 0.607459 | 5_2:+49062990 | None:intergenic |
| TTTGTCTCGAAAGCTCCTCA+AGG | 0.608294 | 5_2:-49063313 | Msa0773750:CDS |
| GCAGGAAAGAATCAAAGGAA+TGG | 0.612015 | 5_2:-49063521 | Msa0773750:CDS |
| AGAAACCCAATGAAAGCCGA+AGG | 0.619539 | 5_2:-49066205 | None:intergenic |
| GAACTTTGGGCTATATGGAG+AGG | 0.625001 | 5_2:-49063274 | Msa0773750:CDS |
| GTATGTTCTAACCTTTACGC+AGG | 0.643436 | 5_2:-49063539 | Msa0773750:CDS |
| GTTTGCAGTTACCATCTGAA+CGG | 0.645168 | 5_2:-49062935 | Msa0773750:three_prime_UTR |
| GTTATTGCAGGCTCCCATGG+TGG | 0.653020 | 5_2:-49064484 | Msa0773750:intron |
| GTACTGGGAACATATGTGCA+TGG | 0.660204 | 5_2:-49064370 | Msa0773750:CDS |
| ACCAAGAAAGTATCTCCTTG+AGG | 0.666708 | 5_2:+49063298 | None:intergenic |
| TCTTCAAGGGAAGCAACACA+AGG | 0.671841 | 5_2:-49063608 | Msa0773750:CDS |
| GGACAAAGCAAAGTAATCGG+AGG | 0.679495 | 5_2:+49065827 | None:intergenic |
| ATCATTCAAGACGATGCCAG+AGG | 0.688719 | 5_2:-49062980 | Msa0773750:CDS |
| TGGACAAAACTAAATACCGA+CGG | 0.689514 | 5_2:-49063406 | Msa0773750:CDS |
| GCTTTCACATGAGACCACCA+TGG | 0.703420 | 5_2:+49064470 | None:intergenic |
| GTGGTCTCATGTGAAAGCCG+TGG | 0.720187 | 5_2:-49064465 | Msa0773750:CDS |
| GGTCTGCTTCGTGATTATCG+GGG | 0.768767 | 5_2:-49063352 | Msa0773750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAAAAAAAATGGATT+CGG | - | chr5_2:49062894-49062913 | Msa0773750:three_prime_UTR | 10.0% |
| !! | ATAAATAAAATTACTTACAA+AGG | + | chr5_2:49063130-49063149 | None:intergenic | 10.0% |
| !! | ATATAAAAAAGCAACATTAT+AGG | + | chr5_2:49063026-49063045 | None:intergenic | 15.0% |
| !! | TTAACTATAACAATGAAATT+TGG | - | chr5_2:49063802-49063821 | Msa0773750:intron | 15.0% |
| !! | TACTTAGTTGAATTTATTAA+TGG | - | chr5_2:49064202-49064221 | Msa0773750:CDS | 15.0% |
| !! | TAAAATGATAAATGTGTATT+TGG | + | chr5_2:49064961-49064980 | None:intergenic | 15.0% |
| !!! | ATTTTCAGACTACTTATAAT+TGG | + | chr5_2:49063411-49063430 | None:intergenic | 20.0% |
| !!! | AAATGTCCAATGTTAAATTT+TGG | - | chr5_2:49063427-49063446 | Msa0773750:CDS | 20.0% |
| !! | TTTGACAAATTCAAAAACTA+CGG | + | chr5_2:49063500-49063519 | None:intergenic | 20.0% |
| !!! | ATCTTCTGTTAGTAATTTTA+TGG | + | chr5_2:49063625-49063644 | None:intergenic | 20.0% |
| !!! | AAAAGAGTAAACAAACATTT+TGG | + | chr5_2:49063717-49063736 | None:intergenic | 20.0% |
| !!! | TTACTCTTTTAACATTGATT+TGG | - | chr5_2:49063727-49063746 | Msa0773750:CDS | 20.0% |
| !!! | TACTCTTTTAACATTGATTT+GGG | - | chr5_2:49063728-49063747 | Msa0773750:CDS | 20.0% |
| !! | ATTATTGAAAATCAAGTATG+AGG | - | chr5_2:49063833-49063852 | Msa0773750:intron | 20.0% |
| !! | TTATTGAAAATCAAGTATGA+GGG | - | chr5_2:49063834-49063853 | Msa0773750:intron | 20.0% |
| !!! | CAAAATAAGGTATTAACAAT+AGG | + | chr5_2:49064501-49064520 | None:intergenic | 20.0% |
| !!! | CTATTGTTAATACCTTATTT+TGG | - | chr5_2:49064499-49064518 | Msa0773750:intron | 20.0% |
| !! | ATAACATTAATTTCTACCTA+TGG | + | chr5_2:49066059-49066078 | None:intergenic | 20.0% |
| !!! | AATAAGTTTGAGATATCATA+AGG | + | chr5_2:49066184-49066203 | None:intergenic | 20.0% |
| !! | TATGATATCTCAAACTTATT+TGG | - | chr5_2:49066184-49066203 | Msa0773750:five_prime_UTR | 20.0% |
| ! | ACTATCTTTCTTTACCATTA+AGG | - | chr5_2:49062822-49062841 | Msa0773750:three_prime_UTR | 25.0% |
| !! | AAAAAAAAATGGATTCGGAA+TGG | - | chr5_2:49062899-49062918 | Msa0773750:three_prime_UTR | 25.0% |
| !! | AAAAAAAATGGATTCGGAAT+GGG | - | chr5_2:49062900-49062919 | Msa0773750:three_prime_UTR | 25.0% |
| !!! | TTTATTTTTGTTGCATATGC+AGG | - | chr5_2:49063083-49063102 | Msa0773750:CDS | 25.0% |
| !! | AATTTGCACTGTTATTTAGT+TGG | - | chr5_2:49063327-49063346 | Msa0773750:CDS | 25.0% |
| !! | ATCTGAGTAAACAAACATTT+TGG | - | chr5_2:49063451-49063470 | Msa0773750:CDS | 25.0% |
| !!! | ACTCTTTTAACATTGATTTG+GGG | - | chr5_2:49063729-49063748 | Msa0773750:CDS | 25.0% |
| ! | TATTGAAAATCAAGTATGAG+GGG | - | chr5_2:49063835-49063854 | Msa0773750:intron | 25.0% |
| ! | ACTAAGAATAAGCAAAATAG+AGG | - | chr5_2:49063877-49063896 | Msa0773750:intron | 25.0% |
| !!! | CATTTTAAGAAGCCATAAAA+CGG | + | chr5_2:49064044-49064063 | None:intergenic | 25.0% |
| ! | ATACTAAATTATGCAATGTC+AGG | + | chr5_2:49064111-49064130 | None:intergenic | 25.0% |
| !! | AGAAGGAACAAAAACAATTT+TGG | - | chr5_2:49064282-49064301 | Msa0773750:CDS | 25.0% |
| !! | GAAGGAACAAAAACAATTTT+GGG | - | chr5_2:49064283-49064302 | Msa0773750:CDS | 25.0% |
| !!! | CAGAAAAGCATTTTTAGAAT+CGG | - | chr5_2:49064672-49064691 | Msa0773750:intron | 25.0% |
| ! | ATGAGTTGTAATAATTGTCT+GGG | + | chr5_2:49064788-49064807 | None:intergenic | 25.0% |
| ! | AATGAGTTGTAATAATTGTC+TGG | + | chr5_2:49064789-49064808 | None:intergenic | 25.0% |
| !! | GAAGAAACTTTTAGTATATC+AGG | - | chr5_2:49064816-49064835 | Msa0773750:intron | 25.0% |
| !! | ACTTTTAGTATATCAGGTAT+TGG | - | chr5_2:49064822-49064841 | Msa0773750:intron | 25.0% |
| !! | TAACCCATATGATGATTTTA+AGG | - | chr5_2:49064884-49064903 | Msa0773750:intron | 25.0% |
| ! | AAGCCTTAAAATCATCATAT+GGG | + | chr5_2:49064890-49064909 | None:intergenic | 25.0% |
| ! | AAAGCCTTAAAATCATCATA+TGG | + | chr5_2:49064891-49064910 | None:intergenic | 25.0% |
| ! | ATTCGTATCACAAATTTACA+TGG | - | chr5_2:49065020-49065039 | Msa0773750:intron | 25.0% |
| ! | ACAAATTTACATGGATGTTA+TGG | - | chr5_2:49065029-49065048 | Msa0773750:intron | 25.0% |
| ! | ACACAATGATTAGCATTAAT+TGG | + | chr5_2:49065076-49065095 | None:intergenic | 25.0% |
| ! | GATTCAGAATATTTGCAATT+TGG | + | chr5_2:49065457-49065476 | None:intergenic | 25.0% |
| ! | TCTTGGGATAAAATCAATAT+GGG | - | chr5_2:49065700-49065719 | Msa0773750:CDS | 25.0% |
| TTTCTTTACCATTAAGGCTT+CGG | - | chr5_2:49062828-49062847 | Msa0773750:three_prime_UTR | 30.0% | |
| TGTTAGTATAATACCAGGAA+AGG | + | chr5_2:49062963-49062982 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTAGTATAATACC+AGG | + | chr5_2:49062968-49062987 | None:intergenic | 30.0% |
| AAAGGACAAAGCAAAGTAAT+CGG | + | chr5_2:49063112-49063131 | None:intergenic | 30.0% | |
| ! | GTTGCAGATATGTTTCTATT+CGG | - | chr5_2:49063219-49063238 | Msa0773750:CDS | 30.0% |
| !!! | ATCAACGATGTCTTGTTTTT+TGG | - | chr5_2:49063270-49063289 | Msa0773750:CDS | 30.0% |
| !!! | TCAACGATGTCTTGTTTTTT+GGG | - | chr5_2:49063271-49063290 | Msa0773750:CDS | 30.0% |
| CAGATGCCAAAATTTAACAT+TGG | + | chr5_2:49063436-49063455 | None:intergenic | 30.0% | |
| ACTAACAAAAGACACATTCA+AGG | + | chr5_2:49063561-49063580 | None:intergenic | 30.0% | |
| TACTAACAGAAGATACATTG+AGG | - | chr5_2:49063631-49063650 | Msa0773750:CDS | 30.0% | |
| ACTAACAGAAGATACATTGA+GGG | - | chr5_2:49063632-49063651 | Msa0773750:CDS | 30.0% | |
| GGATGTTAAAAGTGATATCA+AGG | - | chr5_2:49063750-49063769 | Msa0773750:intron | 30.0% | |
| ACATATGCAATAATGCCTTA+AGG | - | chr5_2:49063922-49063941 | Msa0773750:intron | 30.0% | |
| ! | CGTTTTATGGCTTCTTAAAA+TGG | - | chr5_2:49064042-49064061 | Msa0773750:intron | 30.0% |
| TTTATGGCTTCTTAAAATGG+CGG | - | chr5_2:49064045-49064064 | Msa0773750:intron | 30.0% | |
| ATAAAGTTAAGAGTCTGAGT+AGG | - | chr5_2:49064227-49064246 | Msa0773750:CDS | 30.0% | |
| AAACTAGACACAAAATCAGA+AGG | - | chr5_2:49064265-49064284 | Msa0773750:CDS | 30.0% | |
| ! | CATTTTGAATTCGTTATTGC+AGG | - | chr5_2:49064437-49064456 | Msa0773750:CDS | 30.0% |
| ATTAAGAGCTTGTAGATGTA+TGG | + | chr5_2:49064532-49064551 | None:intergenic | 30.0% | |
| TTAATTAAACGCTACTGTAC+TGG | - | chr5_2:49064547-49064566 | Msa0773750:intron | 30.0% | |
| TAATTAAACGCTACTGTACT+GGG | - | chr5_2:49064548-49064567 | Msa0773750:intron | 30.0% | |
| ! | TGTGATTTTCAGATTGAAGA+TGG | + | chr5_2:49064602-49064621 | None:intergenic | 30.0% |
| TGGAAACATACTTTCTGAAT+CGG | - | chr5_2:49064642-49064661 | Msa0773750:intron | 30.0% | |
| !!! | AAAGCATTTTTAGAATCGGA+TGG | - | chr5_2:49064676-49064695 | Msa0773750:intron | 30.0% |
| !! | TAGCAAAAGTGTTGAAGAAT+CGG | - | chr5_2:49064702-49064721 | Msa0773750:intron | 30.0% |
| ! | AAATGTGTATTTGGAGTTGA+TGG | + | chr5_2:49064952-49064971 | None:intergenic | 30.0% |
| TAAGAAAGTTGTTTGCATCA+GGG | - | chr5_2:49065170-49065189 | Msa0773750:intron | 30.0% | |
| AAGTAAAAAGAAAGTCCAGA+AGG | - | chr5_2:49065244-49065263 | Msa0773750:intron | 30.0% | |
| CATATTATGGATCTAGAAAC+TGG | + | chr5_2:49065479-49065498 | None:intergenic | 30.0% | |
| ! | CAGTTTCTAGATCCATAATA+TGG | - | chr5_2:49065477-49065496 | Msa0773750:intron | 30.0% |
| TTTCCATTCACACCATATTA+TGG | + | chr5_2:49065492-49065511 | None:intergenic | 30.0% | |
| ! | TTCTTTATTTACAGAACCGT+CGG | + | chr5_2:49065546-49065565 | None:intergenic | 30.0% |
| TCTGTAAATAAAGAAACAGC+TGG | - | chr5_2:49065551-49065570 | Msa0773750:intron | 30.0% | |
| !! | AATAAAGAAACAGCTGGTTT+TGG | - | chr5_2:49065557-49065576 | Msa0773750:intron | 30.0% |
| GTCTTGGGATAAAATCAATA+TGG | - | chr5_2:49065699-49065718 | Msa0773750:CDS | 30.0% | |
| AAACCTGTGTGAAAAAAATC+TGG | - | chr5_2:49065786-49065805 | Msa0773750:intron | 30.0% | |
| !!! | TTTCCAGATTTTTTTCACAC+AGG | + | chr5_2:49065792-49065811 | None:intergenic | 30.0% |
| ! | TCTTAGATATTTTGTTCCTC+TGG | + | chr5_2:49065972-49065991 | None:intergenic | 30.0% |
| AATCAACTACAGAAAACCAT+AGG | - | chr5_2:49066040-49066059 | Msa0773750:exon | 30.0% | |
| ATGTTATAGCTTCCATTTAG+TGG | - | chr5_2:49066072-49066091 | Msa0773750:five_prime_UTR | 30.0% | |
| ATGTCAACTTAACCACTAAA+TGG | + | chr5_2:49066087-49066106 | None:intergenic | 30.0% | |
| AGTATAATACCAGGAAAGGA+TGG | + | chr5_2:49062959-49062978 | None:intergenic | 35.0% | |
| ! | ATATGTTTCTATTCGGACGT+TGG | - | chr5_2:49063226-49063245 | Msa0773750:CDS | 35.0% |
| ! | GACATTTTCTCTCACATTTG+TGG | - | chr5_2:49063690-49063709 | Msa0773750:CDS | 35.0% |
| ! | GCAATAATGCCTTAAGGTTT+TGG | - | chr5_2:49063928-49063947 | Msa0773750:intron | 35.0% |
| !!! | TAATGCCTTAAGGTTTTGGA+TGG | - | chr5_2:49063932-49063951 | Msa0773750:intron | 35.0% |
| TATAGCATTCACATGCATGT+TGG | - | chr5_2:49064128-49064147 | Msa0773750:CDS | 35.0% | |
| ATGCTCAAAAGCAATACCAA+AGG | + | chr5_2:49064157-49064176 | None:intergenic | 35.0% | |
| AGCTAGGTTGTGAAAGAAAA+AGG | - | chr5_2:49064314-49064333 | Msa0773750:CDS | 35.0% | |
| TAACAATAGGATAGTTGCCA+CGG | + | chr5_2:49064488-49064507 | None:intergenic | 35.0% | |
| CATACTTTCTGAATCGGATA+CGG | - | chr5_2:49064648-49064667 | Msa0773750:intron | 35.0% | |
| ATACTTTCTGAATCGGATAC+GGG | - | chr5_2:49064649-49064668 | Msa0773750:intron | 35.0% | |
| !! | TAGCAGAAGTGTTGAAGAAT+CGG | - | chr5_2:49064732-49064751 | Msa0773750:intron | 35.0% |
| ! | TTAATTGGTCTCCTTGTATG+TGG | + | chr5_2:49065061-49065080 | None:intergenic | 35.0% |
| TGCTAATCATTGTGTCACAT+AGG | - | chr5_2:49065081-49065100 | Msa0773750:intron | 35.0% | |
| CTAAGAAAGTTGTTTGCATC+AGG | - | chr5_2:49065169-49065188 | Msa0773750:intron | 35.0% | |
| AAAAGAAAGTCCAGAAGGAA+TGG | - | chr5_2:49065249-49065268 | Msa0773750:intron | 35.0% | |
| AAGGAAAAAGAACTTCGAGT+CGG | - | chr5_2:49065350-49065369 | Msa0773750:intron | 35.0% | |
| TGCGTAAAGGTTAGAACATA+CGG | + | chr5_2:49065395-49065414 | None:intergenic | 35.0% | |
| TTTGATTCTTTCCTGCGTAA+AGG | + | chr5_2:49065408-49065427 | None:intergenic | 35.0% | |
| TTTACGCAGGAAAGAATCAA+AGG | - | chr5_2:49065407-49065426 | Msa0773750:intron | 35.0% | |
| GATCCATAATATGGTGTGAA+TGG | - | chr5_2:49065486-49065505 | Msa0773750:intron | 35.0% | |
| TGGACAAAACTAAATACCGA+CGG | - | chr5_2:49065527-49065546 | Msa0773750:intron | 35.0% | |
| ATACTTTCTTGGTGGAACTT+TGG | - | chr5_2:49065645-49065664 | Msa0773750:CDS | 35.0% | |
| TACTTTCTTGGTGGAACTTT+GGG | - | chr5_2:49065646-49065665 | Msa0773750:CDS | 35.0% | |
| TTGTTCTCTCTTTAGGTCTT+GGG | - | chr5_2:49065684-49065703 | Msa0773750:CDS | 35.0% | |
| TGAGTAAGTTTGATGAGTCT+CGG | - | chr5_2:49065816-49065835 | Msa0773750:intron | 35.0% | |
| CGTCTTGAATGATATTGCAA+AGG | + | chr5_2:49065946-49065965 | None:intergenic | 35.0% | |
| !! | AAGCTGTATCGACTGACTTA+TGG | - | chr5_2:49062755-49062774 | Msa0773750:three_prime_UTR | 40.0% |
| ! | TTTTCACTCCGAAGCCTTAA+TGG | + | chr5_2:49062839-49062858 | None:intergenic | 40.0% |
| CATCTCCATCCAAAACCTTA+AGG | + | chr5_2:49063940-49063959 | None:intergenic | 40.0% | |
| CATCCTTCACAAATTGGCAA+TGG | + | chr5_2:49064010-49064029 | None:intergenic | 40.0% | |
| CATTGCCAATTTGTGAAGGA+TGG | - | chr5_2:49064008-49064027 | Msa0773750:intron | 40.0% | |
| TAAGAAGCCATAAAACGGCA+TGG | + | chr5_2:49064039-49064058 | None:intergenic | 40.0% | |
| AGGAGCAGTGTTATCCATTT+CGG | + | chr5_2:49064091-49064110 | None:intergenic | 40.0% | |
| CTCAGAACAATCATCATCAC+TGG | - | chr5_2:49064365-49064384 | Msa0773750:CDS | 40.0% | |
| ! | CACACATTTTGAATTGAGCG+AGG | - | chr5_2:49064618-49064637 | Msa0773750:intron | 40.0% |
| ! | CATTTTGAATTGAGCGAGGA+TGG | - | chr5_2:49064622-49064641 | Msa0773750:intron | 40.0% |
| TATGGTAATCGCCACATACA+AGG | - | chr5_2:49065047-49065066 | Msa0773750:intron | 40.0% | |
| AGGATATACACCACAAGACT+TGG | - | chr5_2:49065101-49065120 | Msa0773750:intron | 40.0% | |
| GGATATACACCACAAGACTT+GGG | - | chr5_2:49065102-49065121 | Msa0773750:intron | 40.0% | |
| GATATACACCACAAGACTTG+GGG | - | chr5_2:49065103-49065122 | Msa0773750:intron | 40.0% | |
| TGCTTAGTGTCACATCTTCA+AGG | - | chr5_2:49065311-49065330 | Msa0773750:intron | 40.0% | |
| GCTTAGTGTCACATCTTCAA+GGG | - | chr5_2:49065312-49065331 | Msa0773750:intron | 40.0% | |
| AGGAAAAAGAACTTCGAGTC+GGG | - | chr5_2:49065351-49065370 | Msa0773750:intron | 40.0% | |
| GTATGTTCTAACCTTTACGC+AGG | - | chr5_2:49065394-49065413 | Msa0773750:intron | 40.0% | |
| GCAGGAAAGAATCAAAGGAA+TGG | - | chr5_2:49065412-49065431 | Msa0773750:intron | 40.0% | |
| ATGGTGTGAATGGAAAAAGC+CGG | - | chr5_2:49065496-49065515 | Msa0773750:intron | 40.0% | |
| GAATGGAAAAAGCCGGAATT+CGG | - | chr5_2:49065503-49065522 | Msa0773750:intron | 40.0% | |
| !! | AGTTTTGTCCATCCGAATTC+CGG | + | chr5_2:49065518-49065537 | None:intergenic | 40.0% |
| !!! | AAAGAAACAGCTGGTTTTGG+TGG | - | chr5_2:49065560-49065579 | Msa0773750:intron | 40.0% |
| TTCGAGACAAATGCGCAAAT+TGG | + | chr5_2:49065611-49065630 | None:intergenic | 40.0% | |
| TCCTCAAGGAGATACTTTCT+TGG | - | chr5_2:49065634-49065653 | Msa0773750:CDS | 40.0% | |
| !! | ACCAAGAAAGTATCTCCTTG+AGG | + | chr5_2:49065638-49065657 | None:intergenic | 40.0% |
| TCAAGGAGATACTTTCTTGG+TGG | - | chr5_2:49065637-49065656 | Msa0773750:CDS | 40.0% | |
| CAAGACCTAAAGAGAGAACA+AGG | + | chr5_2:49065685-49065704 | None:intergenic | 40.0% | |
| CTTGTTCTCTCTTTAGGTCT+TGG | - | chr5_2:49065683-49065702 | Msa0773750:CDS | 40.0% | |
| GATTGTCTTCACAACACTCA+TGG | + | chr5_2:49065738-49065757 | None:intergenic | 40.0% | |
| ! | TTCACACAGGTTTCAGCTTT+TGG | + | chr5_2:49065779-49065798 | None:intergenic | 40.0% |
| AGCAGATCATCTTGCAAAGA+TGG | - | chr5_2:49065871-49065890 | Msa0773750:intron | 40.0% | |
| !! | GTGGAAATGATGTGGTTTTG+TGG | - | chr5_2:49065900-49065919 | Msa0773750:intron | 40.0% |
| AGGCTATGTGAAAAATCAGC+TGG | + | chr5_2:49065926-49065945 | None:intergenic | 40.0% | |
| GTTTGCAGTTACCATCTGAA+CGG | - | chr5_2:49065998-49066017 | Msa0773750:CDS | 40.0% | |
| TCGATACAGCTTCCTTCCTT+CGG | + | chr5_2:49062747-49062766 | None:intergenic | 45.0% | |
| AAGCGCGTTGTTGCATTGTA+CGG | + | chr5_2:49062796-49062815 | None:intergenic | 45.0% | |
| GGAAAGGATGGTGAGTGATT+TGG | + | chr5_2:49062947-49062966 | None:intergenic | 45.0% | |
| AATCACTCACCATCCTTTCC+TGG | - | chr5_2:49062947-49062966 | Msa0773750:exon | 45.0% | |
| GGACAAAGCAAAGTAATCGG+AGG | + | chr5_2:49063109-49063128 | None:intergenic | 45.0% | |
| GTGACAACGTGACACATTCA+AGG | + | chr5_2:49063478-49063497 | None:intergenic | 45.0% | |
| CCTTCACAAATTGGCAATGG+CGG | + | chr5_2:49064007-49064026 | None:intergenic | 45.0% | |
| TGCCAATTTGTGAAGGATGG+TGG | - | chr5_2:49064011-49064030 | Msa0773750:intron | 45.0% | |
| TTACTTTCTGCCACCCGAAA+TGG | - | chr5_2:49064074-49064093 | Msa0773750:intron | 45.0% | |
| GGAGCAGTGTTATCCATTTC+GGG | + | chr5_2:49064090-49064109 | None:intergenic | 45.0% | |
| !! | ACATGCATGTTGGCTTCCTT+TGG | - | chr5_2:49064138-49064157 | Msa0773750:CDS | 45.0% |
| !! | ATTTTGGGTCAAGAGCAGCT+AGG | - | chr5_2:49064298-49064317 | Msa0773750:CDS | 45.0% |
| CTTTCACATGAGACCACCAT+GGG | + | chr5_2:49064465-49064484 | None:intergenic | 45.0% | |
| TATGGCGCAGCACCAAAATA+AGG | + | chr5_2:49064514-49064533 | None:intergenic | 45.0% | |
| GTACTGGGAACATATGTGCA+TGG | - | chr5_2:49064563-49064582 | Msa0773750:intron | 45.0% | |
| CATCAGGGTAGAGATGATCT+TGG | - | chr5_2:49065185-49065204 | Msa0773750:intron | 45.0% | |
| AAGCACAACTCCATTCCTTC+TGG | + | chr5_2:49065262-49065281 | None:intergenic | 45.0% | |
| TCTTCAAGGGAAGCAACACA+AGG | - | chr5_2:49065325-49065344 | Msa0773750:intron | 45.0% | |
| GTGGTCTGCTTCGTGATTAT+CGG | - | chr5_2:49065579-49065598 | Msa0773750:intron | 45.0% | |
| TGGTCTGCTTCGTGATTATC+GGG | - | chr5_2:49065580-49065599 | Msa0773750:intron | 45.0% | |
| TTTGTCTCGAAAGCTCCTCA+AGG | - | chr5_2:49065620-49065639 | Msa0773750:CDS | 45.0% | |
| TGGTGGAACTTTGGGCTATA+TGG | - | chr5_2:49065654-49065673 | Msa0773750:CDS | 45.0% | |
| GAACTTTGGGCTATATGGAG+AGG | - | chr5_2:49065659-49065678 | Msa0773750:CDS | 45.0% | |
| !! | AGAGGCCTTGTTCTCTCTTT+AGG | - | chr5_2:49065677-49065696 | Msa0773750:CDS | 45.0% |
| AGTCTCGGATTTCTCACTCA+TGG | - | chr5_2:49065831-49065850 | Msa0773750:CDS | 45.0% | |
| CTTGCAAAGATGGCTGTTTG+TGG | - | chr5_2:49065881-49065900 | Msa0773750:intron | 45.0% | |
| GGCTGTTTGTGGAAATGATG+TGG | - | chr5_2:49065892-49065911 | Msa0773750:intron | 45.0% | |
| ATCATTCAAGACGATGCCAG+AGG | - | chr5_2:49065953-49065972 | Msa0773750:intron | 45.0% | |
| AGTTACCATCTGAACGGAGT+TGG | - | chr5_2:49066004-49066023 | Msa0773750:CDS | 45.0% | |
| !! | ATACAAAATTAAAAAAAAAA+TGG | - | chr5_2:49062888-49062907 | Msa0773750:three_prime_UTR | 5.0% |
| GGAGATGTAGTGCTGTCTTG+TGG | - | chr5_2:49063953-49063972 | Msa0773750:intron | 50.0% | |
| GATGTAGTGCTGTCTTGTGG+TGG | - | chr5_2:49063956-49063975 | Msa0773750:intron | 50.0% | |
| !! | TGCTGTCTTGTGGTGGATTG+CGG | - | chr5_2:49063963-49063982 | Msa0773750:intron | 50.0% |
| CCGCCATTGCCAATTTGTGA+AGG | - | chr5_2:49064004-49064023 | Msa0773750:intron | 50.0% | |
| CGCCACCATCCTTCACAAAT+TGG | + | chr5_2:49064016-49064035 | None:intergenic | 50.0% | |
| GCAGTGTTATCCATTTCGGG+TGG | + | chr5_2:49064087-49064106 | None:intergenic | 50.0% | |
| TTCGTTATTGCAGGCTCCCA+TGG | - | chr5_2:49064446-49064465 | Msa0773750:CDS | 50.0% | |
| GCTTTCACATGAGACCACCA+TGG | + | chr5_2:49064466-49064485 | None:intergenic | 50.0% | |
| GGAACATATGTGCATGGACG+AGG | - | chr5_2:49064569-49064588 | Msa0773750:intron | 50.0% | |
| AGGGAAGCAACACAAGGCTA+AGG | - | chr5_2:49065331-49065350 | Msa0773750:intron | 50.0% | |
| GGAAAAAGCCGGAATTCGGA+TGG | - | chr5_2:49065507-49065526 | Msa0773750:intron | 50.0% | |
| GGTCTGCTTCGTGATTATCG+GGG | - | chr5_2:49065581-49065600 | Msa0773750:intron | 50.0% | |
| TACCATCTGAACGGAGTTGG+TGG | - | chr5_2:49066007-49066026 | Msa0773750:CDS | 50.0% | |
| !! | TGTCTTGTGGTGGATTGCGG+TGG | - | chr5_2:49063966-49063985 | Msa0773750:intron | 55.0% |
| GTTATTGCAGGCTCCCATGG+TGG | - | chr5_2:49064449-49064468 | Msa0773750:CDS | 55.0% | |
| GTGGTCTCATGTGAAAGCCG+TGG | - | chr5_2:49064468-49064487 | Msa0773750:CDS | 55.0% | |
| GCATCTCTCCCCAAGTCTTG+TGG | + | chr5_2:49065114-49065133 | None:intergenic | 55.0% | |
| CTCCACCAACTCCGTTCAGA+TGG | + | chr5_2:49066012-49066031 | None:intergenic | 55.0% | |
| !!! | GGTGGCGCCATGCCGTTTTA+TGG | - | chr5_2:49064029-49064048 | Msa0773750:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 49062739 | 49066216 | 49062739 | ID=Msa0773750;Name=Msa0773750 |
| chr5_2 | mRNA | 49062739 | 49066216 | 49062739 | ID=Msa0773750-mRNA-1;Parent=Msa0773750;Name=Msa0773750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=168|1|0.8|1|1|1|5|219|465 |
| chr5_2 | exon | 49062739 | 49063764 | 49062739 | ID=Msa0773750-mRNA-1:exon:14667;Parent=Msa0773750-mRNA-1 |
| chr5_2 | exon | 49064118 | 49064496 | 49064118 | ID=Msa0773750-mRNA-1:exon:14666;Parent=Msa0773750-mRNA-1 |
| chr5_2 | exon | 49065607 | 49065729 | 49065607 | ID=Msa0773750-mRNA-1:exon:14665;Parent=Msa0773750-mRNA-1 |
| chr5_2 | exon | 49065824 | 49065850 | 49065824 | ID=Msa0773750-mRNA-1:exon:14664;Parent=Msa0773750-mRNA-1 |
| chr5_2 | exon | 49065987 | 49066216 | 49065987 | ID=Msa0773750-mRNA-1:exon:14663;Parent=Msa0773750-mRNA-1 |
| chr5_2 | five_prime_UTR | 49066049 | 49066216 | 49066049 | ID=Msa0773750-mRNA-1:five_prime_utr;Parent=Msa0773750-mRNA-1 |
| chr5_2 | CDS | 49065987 | 49066048 | 49065987 | ID=Msa0773750-mRNA-1:cds;Parent=Msa0773750-mRNA-1 |
| chr5_2 | CDS | 49065824 | 49065850 | 49065824 | ID=Msa0773750-mRNA-1:cds;Parent=Msa0773750-mRNA-1 |
| chr5_2 | CDS | 49065607 | 49065729 | 49065607 | ID=Msa0773750-mRNA-1:cds;Parent=Msa0773750-mRNA-1 |
| chr5_2 | CDS | 49064118 | 49064496 | 49064118 | ID=Msa0773750-mRNA-1:cds;Parent=Msa0773750-mRNA-1 |
| chr5_2 | CDS | 49062958 | 49063764 | 49062958 | ID=Msa0773750-mRNA-1:cds;Parent=Msa0773750-mRNA-1 |
| chr5_2 | three_prime_UTR | 49062739 | 49062957 | 49062739 | ID=Msa0773750-mRNA-1:three_prime_utr;Parent=Msa0773750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
