AlfalfaGEDB | Msa0852590

M. sativa cultivar zhongmu-4 / Msa0852590

KEGG: -
GO: GO:0001067 GO:0002230 GO:0002237 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009814 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016020 GO:0016032 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0033554 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043900 GO:0044212 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0098542 GO:0140110 GO:1900101 GO:1900103 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1905898 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852590	XP_024640024.1	93.313	643	35	4	1	637	1	641	0.0	1214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852590	sp\|F4JN35\|NTL9_ARATH	43.640	456	198	18	17	459	1	410	4.63e-96	307

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852590	I3SLK6	93.002	643	37	4	1	637	1	641	0.0	1212

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TFs/TRs:

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Gene ID	Type	Classification
Msa0852590	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0733640	Msa0852590	0.830949	2.200891e-55	-8.615850e-47
Msa0812300	Msa0852590	0.829298	5.565968e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852590	MtrunA17_Chr5g0428991	92.971	626	36	4	1	620	1	624	0.0	1175
Msa0852590	MtrunA17_Chr3g0128151	48.645	664	240	14	1	634	1	593	0.0	558
Msa0852590	MtrunA17_Chr3g0128111	70.673	208	54	1	28	235	45	245	2.09e-108	327
Msa0852590	MtrunA17_Chr3g0109821	62.500	152	56	1	25	175	6	157	9.89e-58	206
Msa0852590	MtrunA17_Chr6g0481091	60.265	151	60	0	25	175	6	156	1.57e-57	194
Msa0852590	MtrunA17_Chr2g0309891	52.632	190	77	3	25	208	6	188	5.21e-57	196
Msa0852590	MtrunA17_Chr5g0433781	61.589	151	58	0	25	175	6	156	2.50e-56	202
Msa0852590	MtrunA17_Chr5g0400461	53.254	169	69	3	25	186	6	171	1.11e-52	184
Msa0852590	MtrunA17_Chr8g0364791	50.955	157	77	0	20	176	1	157	6.75e-51	182
Msa0852590	MtrunA17_Chr3g0092671	38.676	287	145	8	20	305	1	257	6.87e-51	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852590	AT4G35580.1	43.640	456	198	18	17	459	1	410	4.70e-97	307
Msa0852590	AT4G35580.3	43.640	456	198	18	17	459	1	410	5.91e-97	308
Msa0852590	AT4G35580.2	43.640	456	198	18	17	459	1	410	6.14e-97	308
Msa0852590	AT3G49530.1	38.889	468	175	16	15	459	3	382	4.86e-91	290
Msa0852590	AT3G49530.2	38.889	468	175	16	15	459	3	382	5.23e-91	288
Msa0852590	AT5G24590.2	47.813	343	120	12	15	330	3	313	9.23e-90	286
Msa0852590	AT1G33060.2	36.629	617	284	20	16	561	15	595	1.75e-89	291
Msa0852590	AT1G33060.1	37.129	606	274	20	16	550	15	584	2.06e-89	291
Msa0852590	AT3G17730.1	62.252	151	57	0	25	175	6	156	2.31e-60	202
Msa0852590	AT1G65910.1	61.589	151	58	0	25	175	6	156	6.17e-58	206

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Find 198 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAACAAGCTCCTCGT+CGG	0.639154	5_4:-43745803	None:intergenic
AAAGATCGAAGGATCAAGTC+TGG	0.512532	5_4:+43747786	Msa0852590:CDS
AAATGGGCCGTGCAGCGACT+CGG	0.567183	5_4:+43748929	Msa0852590:CDS
AAATTCTACACAGGAATCAT+CGG	0.567363	5_4:-43750028	None:intergenic
AACAACTAATGGGTATTGGA+AGG	0.603041	5_4:+43747755	Msa0852590:CDS
AACAAGCGACAGAGGACATA+TGG	0.406035	5_4:-43748252	None:intergenic
AACAATGAATTAATTCAGTA+TGG	0.382424	5_4:+43748792	Msa0852590:CDS
AACCCAGTGATTCAAGCACA+AGG	0.683254	5_4:+43749638	Msa0852590:CDS
AACCCGGTGATGCAAGCACA+AGG	0.605040	5_4:+43749440	Msa0852590:CDS
AAGACTGATAGACGCCTCAC+TGG	0.500018	5_4:-43748874	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTGAGGATGAAGATTAA+TGG	+	chr5_4:43745826-43745845	Msa0852590:CDS	30.0%
AGGATGAAGATTAATGGAAA+CGG	+	chr5_4:43745832-43745851	Msa0852590:CDS	30.0%
ATGTTTGTAAATTTGAGCCT+TGG	+	chr5_4:43745884-43745903	Msa0852590:CDS	30.0%
TGTTTGTAAATTTGAGCCTT+GGG	+	chr5_4:43745885-43745904	Msa0852590:CDS	30.0%
AAATTAACCGCAAGCTTAAA+CGG	-	chr5_4:43746717-43746736	None:intergenic	30.0%
TTTAAGCTTGCGGTTAATTT+CGG	+	chr5_4:43746717-43746736	Msa0852590:intron	30.0%
ATAGAAACATTGAGATGAGA+AGG	+	chr5_4:43746933-43746952	Msa0852590:intron	30.0%
TAGAAACATTGAGATGAGAA+GGG	+	chr5_4:43746934-43746953	Msa0852590:intron	30.0%
AGAAGAAGTAAGAACATTAC+GGG	+	chr5_4:43747188-43747207	Msa0852590:intron	30.0%
AAAGTGTGGAAAGTTAAAAG+TGG	+	chr5_4:43747231-43747250	Msa0852590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	43745511	43750205	43745511	ID=Msa0852590;Name=Msa0852590
chr5_4	mRNA	43745511	43750205	43745511	ID=Msa0852590-mRNA-1;Parent=Msa0852590;Name=Msa0852590-mRNA-1;_AED=0.16;_eAED=0.16;_QI=192\|1\|1\|1\|1\|1\|5\|178\|638
chr5_4	exon	43745511	43745916	43745511	ID=Msa0852590-mRNA-1:exon:13834;Parent=Msa0852590-mRNA-1
chr5_4	exon	43747664	43747941	43747664	ID=Msa0852590-mRNA-1:exon:13835;Parent=Msa0852590-mRNA-1
chr5_4	exon	43748249	43748557	43748249	ID=Msa0852590-mRNA-1:exon:13836;Parent=Msa0852590-mRNA-1
chr5_4	exon	43748672	43748974	43748672	ID=Msa0852590-mRNA-1:exon:13837;Parent=Msa0852590-mRNA-1
chr5_4	exon	43749215	43750205	43749215	ID=Msa0852590-mRNA-1:exon:13838;Parent=Msa0852590-mRNA-1
chr5_4	five_prime_UTR	43745511	43745702	43745511	ID=Msa0852590-mRNA-1:five_prime_utr;Parent=Msa0852590-mRNA-1
chr5_4	CDS	43745703	43745916	43745703	ID=Msa0852590-mRNA-1:cds;Parent=Msa0852590-mRNA-1
chr5_4	CDS	43747664	43747941	43747664	ID=Msa0852590-mRNA-1:cds;Parent=Msa0852590-mRNA-1
chr5_4	CDS	43748249	43748557	43748249	ID=Msa0852590-mRNA-1:cds;Parent=Msa0852590-mRNA-1
chr5_4	CDS	43748672	43748974	43748672	ID=Msa0852590-mRNA-1:cds;Parent=Msa0852590-mRNA-1
chr5_4	CDS	43749215	43750027	43749215	ID=Msa0852590-mRNA-1:cds;Parent=Msa0852590-mRNA-1
chr5_4	three_prime_UTR	43750028	43750205	43750028	ID=Msa0852590-mRNA-1:three_prime_utr;Parent=Msa0852590-mRNA-1

Gene Sequence

>Msa0852590

ATGGGTGCCGTAGTTGAGTGTTTACCGTCGTCGCAACAAGCGGAGGAGCTGGCCGTTCTGTCACTGAACAAGCTGCCGTTAGGGTTCCGCTTCCGGCCTACCGACGAGGAGCTTGTTGATTTTTATCTGAGGATGAAGATTAATGGAAACGGTGATGAAGTTTGGGTTATTCGTGAAGTTGATGTTTGTAAATTTGAGCCTTGGGATTTGCCTGATTTATCGATCGTAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCAATGGATCGGAAGTATCCGAATGGGAGCAGATTGAACCGCGCAACAACTAATGGGTATTGGAAGGCGACAGGAAAAGATCGAAGGATCAAGTCTGGTGCTACCTTGATTGGAATGAAGAAGACTCTTGTTTTCTACGCTGGTCGTGCTCCGAAGGGGAAGAGGACTCATTGGGTTATGCATGAGTATAGACCTACCTTAAAAGAGCTTGATGGCACCAACCCTGGACAGAACCCATATGTCCTCTGTCGCTTGTTTAAGAAGCAAGATGAGAGTCTTGAAAGTTCAAACTGTGGCGAAGCGGAGCAGACTACTTCAACTCCTACGACTGCCAATTACTCTCCAGAAGAAATACAGTCTGACCTAAATCCGGTTCCTCTATCTTCCTCACCAGCGACAGAAGATGAAAGGCACCTAGCAGCTATCCCTGAGAACTCCGAGGAAGCAATGTCCCACATTATAACCACAGCTGATTGCTATAGCGATGCATGTAATGCTTCTGATGCACAACATCAGAGTTTAGAAGTACCGGCTGCAGAGGAAGATCAGCTGTTAAACTTGGACATATTTGATAGCCCACGATTTGAGCTTGAGCCATGGGATGATAAGTTATTCTCCCCAGCCCATGCACACTTTCCACCAGAATTTGGCTATCAGGCCAACAATGAATTAATTCAGTATGGTACAAACGGGACAGATGTTTCAGACTTTTTCAACTCGTGTGTTAATTGGGACGAGTTCTCCAGTGAGGCGTCTATCAGTCTTGATCTGAGCCCTACCATTTTTAAAATTCCAGAAAATGGGCCGTGCAGCGACTCGGATGTGGAAATGGCCAATATGATGAATCTGCTAGCATCACATGATTATCCAGAGGGAGTGACTCCGCAAAATAGTGATGTAGGGTTGTTTCAGAACAATTCCCAGATGACTCTTTCTAATGATAGCATTGGCCAAATGACGACTGTGGTAAATGAATATGAGCAAATGTGGAATTCGGATACTGTTGTCGATGGCGGCACTGGAATTAGGATAAGGTCTAGACAAGGACAAAGTGAACAACCAGACATGAACCCGGTGATGCAAGCACAAGGAAGTGCACCAAGGAGAATACGATTGGGAGGATTTGTTGCGCGTTGCCTTGTTTCTGAGGAGACGACGGAAGATGGGAGTCGTGCATCAGAATATGAACAATCGAGGATTTTGGATAGTGACACTGGTATAAGGATAAGGAGGACTCGACAAAGAAGAAATGAAGAGCCAAACATGAACCCAGTGATTCAAGCACAAGGTAGTGCCCCGCGTAGAATACGATTAGGAGGATTTGTCAAGCATTCCCTTGTTTCCGAGGAGACTACAAAAGATGAGAGTTTGCAGGAGACGGAAGCTTCAGAAAACCATGCTGCTGCTGAGAGTGCTGCCGATCCAGAGAAGACATCTCCCATGTCAGCAAGAGAGATCTGTGAGCAACATGTTACAACTGCAGAATCCAACTTGGGGTCGAAAAACTTTCTGTTGGGCAGGGTTCGGTGCACTTCAAAGACATCCTCGATTAGCGCGATGCGGTCTACTGTTCTTGCATATTCTGCCATTGTAATGGTTTCGCTAGTATTGCTTGTTAATATTTGGGGATATCTTAGATTTAGAAATGCTTACTAG

Protein sequence

>Msa0852590

MGAVVECLPSSQQAEELAVLSLNKLPLGFRFRPTDEELVDFYLRMKINGNGDEVWVIREVDVCKFEPWDLPDLSIVRNKDPEWFFFCPMDRKYPNGSRLNRATTNGYWKATGKDRRIKSGATLIGMKKTLVFYAGRAPKGKRTHWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLESSNCGEAEQTTSTPTTANYSPEEIQSDLNPVPLSSSPATEDERHLAAIPENSEEAMSHIITTADCYSDACNASDAQHQSLEVPAAEEDQLLNLDIFDSPRFELEPWDDKLFSPAHAHFPPEFGYQANNELIQYGTNGTDVSDFFNSCVNWDEFSSEASISLDLSPTIFKIPENGPCSDSDVEMANMMNLLASHDYPEGVTPQNSDVGLFQNNSQMTLSNDSIGQMTTVVNEYEQMWNSDTVVDGGTGIRIRSRQGQSEQPDMNPVMQAQGSAPRRIRLGGFVARCLVSEETTEDGSRASEYEQSRILDSDTGIRIRRTRQRRNEEPNMNPVIQAQGSAPRRIRLGGFVKHSLVSEETTKDESLQETEASENHAAAESAADPEKTSPMSAREICEQHVTTAESNLGSKNFLLGRVRCTSKTSSISAMRSTVLAYSAIVMVSLVLLVNIWGYLRFRNAY*