Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852760 | XP_039690118.1 | 52.751 | 527 | 193 | 9 | 26 | 522 | 68 | 568 | 2.07e-157 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852760 | A0A396HN29 | 50.184 | 544 | 192 | 14 | 26 | 523 | 91 | 601 | 1.54e-147 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0852760 | Msa0887620 | 0.849212 | 3.738774e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852760 | MtrunA17_Chr5g0410581 | 50.184 | 544 | 192 | 14 | 26 | 523 | 91 | 601 | 2.97e-151 | 452 |
| Msa0852760 | MtrunA17_Chr5g0410341 | 37.500 | 536 | 269 | 16 | 23 | 523 | 51 | 555 | 2.78e-89 | 289 |
| Msa0852760 | MtrunA17_Chr5g0410171 | 35.379 | 554 | 271 | 18 | 8 | 523 | 39 | 543 | 1.17e-77 | 258 |
| Msa0852760 | MtrunA17_Chr5g0410501 | 48.797 | 291 | 118 | 3 | 240 | 522 | 21 | 288 | 8.91e-77 | 244 |
| Msa0852760 | MtrunA17_Chr5g0410561 | 56.164 | 219 | 69 | 6 | 33 | 230 | 1 | 213 | 4.46e-60 | 197 |
| Msa0852760 | MtrunA17_Chr6g0456101 | 30.726 | 537 | 274 | 16 | 31 | 523 | 68 | 550 | 7.10e-57 | 202 |
| Msa0852760 | MtrunA17_Chr5g0410411 | 45.923 | 233 | 107 | 4 | 15 | 230 | 75 | 305 | 4.76e-53 | 182 |
| Msa0852760 | MtrunA17_Chr5g0410471 | 49.020 | 204 | 84 | 5 | 21 | 208 | 114 | 313 | 1.00e-48 | 171 |
| Msa0852760 | MtrunA17_Chr5g0410381 | 46.288 | 229 | 91 | 6 | 83 | 284 | 20 | 243 | 1.04e-48 | 168 |
| Msa0852760 | MtrunA17_Chr5g0410461 | 39.041 | 292 | 117 | 12 | 267 | 523 | 4 | 269 | 9.28e-44 | 161 |
| Msa0852760 | MtrunA17_Chr5g0410551 | 66.990 | 103 | 34 | 0 | 421 | 523 | 1 | 103 | 6.33e-42 | 146 |
| Msa0852760 | MtrunA17_Chr5g0410211 | 44.444 | 198 | 102 | 3 | 95 | 284 | 1 | 198 | 3.33e-41 | 147 |
| Msa0852760 | MtrunA17_Chr5g0410291 | 42.935 | 184 | 100 | 3 | 105 | 284 | 11 | 193 | 1.22e-38 | 140 |
| Msa0852760 | MtrunA17_Chr5g0410201 | 50.794 | 126 | 59 | 2 | 400 | 523 | 13 | 137 | 3.18e-32 | 126 |
| Msa0852760 | MtrunA17_Chr5g0410371 | 60.194 | 103 | 40 | 1 | 421 | 523 | 1 | 102 | 4.91e-32 | 125 |
| Msa0852760 | MtrunA17_Chr5g0410271 | 50.794 | 126 | 59 | 2 | 400 | 523 | 12 | 136 | 5.01e-32 | 125 |
| Msa0852760 | MtrunA17_Chr6g0456141 | 54.867 | 113 | 49 | 1 | 411 | 523 | 83 | 193 | 4.48e-31 | 124 |
| Msa0852760 | MtrunA17_Chr6g0457101 | 29.446 | 343 | 206 | 10 | 31 | 342 | 53 | 390 | 2.77e-29 | 122 |
| Msa0852760 | MtrunA17_Chr6g0457101 | 52.212 | 113 | 52 | 1 | 411 | 523 | 387 | 497 | 5.23e-28 | 118 |
| Msa0852760 | MtrunA17_Chr6g0456151 | 32.743 | 226 | 127 | 6 | 27 | 230 | 64 | 286 | 2.33e-25 | 105 |
| Msa0852760 | MtrunA17_Chr5g0410441 | 57.303 | 89 | 36 | 2 | 436 | 523 | 1 | 88 | 3.70e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852760 | AT3G18670.1 | 37.903 | 124 | 76 | 1 | 400 | 523 | 272 | 394 | 4.22e-17 | 84.7 |
| Msa0852760 | AT3G18670.1 | 30.939 | 181 | 105 | 6 | 104 | 273 | 79 | 250 | 5.61e-14 | 75.1 |
| Msa0852760 | AT3G18670.2 | 37.903 | 124 | 76 | 1 | 400 | 523 | 327 | 449 | 4.50e-17 | 85.1 |
| Msa0852760 | AT3G18670.2 | 31.053 | 190 | 111 | 6 | 104 | 282 | 79 | 259 | 1.47e-16 | 83.2 |
| Msa0852760 | AT5G04690.1 | 37.719 | 114 | 68 | 2 | 410 | 523 | 313 | 423 | 6.43e-11 | 65.5 |
| Msa0852760 | AT5G04690.3 | 37.719 | 114 | 68 | 2 | 410 | 523 | 333 | 443 | 6.57e-11 | 65.5 |
| Msa0852760 | AT5G04690.2 | 37.719 | 114 | 68 | 2 | 410 | 523 | 347 | 457 | 6.95e-11 | 65.5 |
Find 98 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACTCAATTATTCCATTT+TGG | 0.098169 | 5_4:+43989012 | None:intergenic |
| AAAGTATCAACGAAATAAAT+TGG | 0.189005 | 5_4:-43994309 | Msa0852760:CDS |
| CATTAAATCCTTTGATAGTT+TGG | 0.210366 | 5_4:+43989084 | None:intergenic |
| GGATCGATATGGAAAATATT+TGG | 0.213859 | 5_4:-43994866 | Msa0852760:CDS |
| TGTATCACGGCTAAAATATT+TGG | 0.232976 | 5_4:-43993908 | Msa0852760:intron |
| GACTCTTCCTCTAAAGCTAT+TGG | 0.242860 | 5_4:-43991117 | Msa0852760:CDS |
| TGGAGAAATCCCTGTTCTTT+TGG | 0.263100 | 5_4:-43994029 | Msa0852760:CDS |
| GATGACACCGAGAGCGAAAT+AGG | 0.273955 | 5_4:-43994082 | Msa0852760:CDS |
| TTCAAGTGTCTAAATATCTT+AGG | 0.290908 | 5_4:-43990891 | Msa0852760:intron |
| GAGAGAACTTCAATGGTTTA+AGG | 0.296574 | 5_4:-43988739 | None:intergenic |
| AAGGACTTCTACAGGAGTTT+TGG | 0.298898 | 5_4:+43993964 | None:intergenic |
| AGATATTCAATAAGCAGATT+TGG | 0.301017 | 5_4:+43993618 | None:intergenic |
| ATATCTCTGCTTACATGTTA+TGG | 0.333492 | 5_4:-43994887 | None:intergenic |
| ATCATGTGGACGACAGATTC+GGG | 0.338623 | 5_4:-43994750 | Msa0852760:CDS |
| TGCAAGCAGTACAGGGGAAT+TGG | 0.340097 | 5_4:+43991074 | None:intergenic |
| TGGAAAATATTTGGAAGGAT+TGG | 0.355241 | 5_4:-43994857 | Msa0852760:CDS |
| AACATACCCAATAGCTTTAG+AGG | 0.359852 | 5_4:+43991110 | None:intergenic |
| TTCAACAATTGCATACTTGT+TGG | 0.365915 | 5_4:-43990922 | Msa0852760:CDS |
| TCTCTCTGTAGTTGCCTAGT+AGG | 0.366261 | 5_4:+43988756 | None:intergenic |
| ATGTTGTATGCAGCCCAAAA+TGG | 0.370213 | 5_4:-43989026 | Msa0852760:CDS |
| ATAAATTGGGATGATGTATA+TGG | 0.373714 | 5_4:-43994295 | Msa0852760:CDS |
| AAAATTCGCAATGTCGGAAT+CGG | 0.374407 | 5_4:+43991241 | None:intergenic |
| GATATTCAATAAGCAGATTT+GGG | 0.374800 | 5_4:+43993619 | None:intergenic |
| ACAGTGATAGAGGCATATTT+TGG | 0.377986 | 5_4:-43988941 | Msa0852760:CDS |
| CTTCACATTGCAGTAATTGC+TGG | 0.381528 | 5_4:-43994241 | Msa0852760:CDS |
| GGTCATATAACCTCTGATTC+AGG | 0.387690 | 5_4:-43994274 | Msa0852760:CDS |
| TTACATGTTATGGATCGATA+TGG | 0.398783 | 5_4:-43994877 | Msa0852760:CDS |
| TTGGGTATGTTATGCTGGTC+TGG | 0.406113 | 5_4:-43991098 | Msa0852760:CDS |
| TAGTTGAAAGAGAGGTTTCA+TGG | 0.409537 | 5_4:-43994811 | Msa0852760:CDS |
| TATCATGTGGACGACAGATT+CGG | 0.413830 | 5_4:-43994751 | Msa0852760:CDS |
| TATTTCGTTGATACTTTCAA+TGG | 0.414319 | 5_4:+43994315 | None:intergenic |
| TATCTTGCTTTGTTACAAAC+TGG | 0.418481 | 5_4:+43994176 | None:intergenic |
| CAACTCATATACTTTCTGAA+TGG | 0.420645 | 5_4:-43988885 | Msa0852760:CDS |
| ACTCTTCCTCTAAAGCTATT+GGG | 0.422039 | 5_4:-43991116 | Msa0852760:CDS |
| AGATATCGTACTGATGCGTT+TGG | 0.423951 | 5_4:-43988843 | Msa0852760:CDS |
| TTAGCGGTAGCCAAAAGAAC+AGG | 0.425252 | 5_4:+43994019 | None:intergenic |
| TAGCTGAATCGACTTCTACT+TGG | 0.430384 | 5_4:+43993534 | None:intergenic |
| TACAGGTTTAAGCGTAGAAA+AGG | 0.433563 | 5_4:-43991288 | Msa0852760:CDS |
| TTGGCTTCCTCACACTGGCT+TGG | 0.436565 | 5_4:-43991148 | Msa0852760:CDS |
| GCGAAATGTTTGTCAGTACT+TGG | 0.442796 | 5_4:-43991167 | Msa0852760:CDS |
| CTTCATTGAATTACAATGAC+AGG | 0.447337 | 5_4:-43988785 | Msa0852760:CDS |
| CATATACTTTCTGAATGGAT+TGG | 0.449717 | 5_4:-43988880 | Msa0852760:CDS |
| AAATTCGCAATGTCGGAATC+GGG | 0.456735 | 5_4:+43991242 | None:intergenic |
| AGCTATTGGGTATGTTATGC+TGG | 0.458882 | 5_4:-43991103 | Msa0852760:CDS |
| TGTCTTCCCTATTTCGCTCT+CGG | 0.459946 | 5_4:+43994075 | None:intergenic |
| TCATGTTCTACTACCTTGCT+TGG | 0.463418 | 5_4:-43991335 | Msa0852760:CDS |
| CTGTCATTGTAATTCAATGA+AGG | 0.465981 | 5_4:+43988786 | None:intergenic |
| AAGTATCAACGAAATAAATT+GGG | 0.473873 | 5_4:-43994308 | Msa0852760:CDS |
| CATTTCTTTGTGTCCATTAG+CGG | 0.474189 | 5_4:+43994003 | None:intergenic |
| AAATTCGTGAATCATTGTTA+AGG | 0.479479 | 5_4:+43993945 | None:intergenic |
| TCGACGACTGATAGAAGATC+AGG | 0.481219 | 5_4:+43988966 | None:intergenic |
| GGAATCGGGAATATTATAGT+TGG | 0.495815 | 5_4:+43991256 | None:intergenic |
| TGTTTCTGTAGTTGAAAGAG+AGG | 0.497435 | 5_4:-43994819 | Msa0852760:CDS |
| AGCTGAATCGACTTCTACTT+GGG | 0.499743 | 5_4:+43993535 | None:intergenic |
| ATATGATAGATGTGGCTTTG+AGG | 0.505980 | 5_4:-43993656 | Msa0852760:intron |
| TTGAGTTCATAAATGCTATG+AGG | 0.507632 | 5_4:-43988998 | Msa0852760:CDS |
| AACTACAGAGAGAACTTCAA+TGG | 0.508313 | 5_4:-43988746 | Msa0852760:CDS |
| TCATTGTTAAGGACTTCTAC+AGG | 0.508340 | 5_4:+43993956 | None:intergenic |
| ATGACACCGAGAGCGAAATA+GGG | 0.509586 | 5_4:-43994081 | Msa0852760:CDS |
| GTGGAAATATTGGTAAGCCA+TGG | 0.512873 | 5_4:-43994205 | Msa0852760:CDS |
| TTTAGCCAACGCAATTAAGC+CGG | 0.519579 | 5_4:+43993572 | None:intergenic |
| TGAAAGAGAGGTTTCATGGA+AGG | 0.522561 | 5_4:-43994807 | Msa0852760:CDS |
| CTTTCTGAATGGATTGGAGA+AGG | 0.525197 | 5_4:-43988874 | Msa0852760:CDS |
| AGTCCTATGTAGACTTCTAT+CGG | 0.530610 | 5_4:+43991196 | None:intergenic |
| TTACAAACTGGTCGTTCCCA+TGG | 0.532965 | 5_4:+43994188 | None:intergenic |
| CGATATGGAAAATATTTGGA+AGG | 0.533831 | 5_4:-43994862 | Msa0852760:CDS |
| TTCAATCAGCTAGAAAAGCA+TGG | 0.535784 | 5_4:-43994712 | Msa0852760:CDS |
| TGAATGGATTGGAGAAGGAG+AGG | 0.537174 | 5_4:-43988869 | Msa0852760:CDS |
| CATCACTTGTCAACAACATA+CGG | 0.538891 | 5_4:-43994686 | Msa0852760:CDS |
| ATTCTCCGGCTTAATTGCGT+TGG | 0.540032 | 5_4:-43993577 | Msa0852760:CDS |
| CTGAAGACAGTGAACTCAGA+TGG | 0.541163 | 5_4:-43994049 | Msa0852760:CDS |
| TGAGTTCATAAATGCTATGA+GGG | 0.542441 | 5_4:-43988997 | Msa0852760:CDS |
| GCTTCTTGAGCGATGTATCA+CGG | 0.543536 | 5_4:-43993921 | Msa0852760:CDS |
| CACTGCAAAATTCGCAATGT+CGG | 0.545117 | 5_4:+43991235 | None:intergenic |
| CATTCAGAAAGTATATGAGT+TGG | 0.551407 | 5_4:+43988886 | None:intergenic |
| ATGACAGGTTCAATCCTACT+AGG | 0.553593 | 5_4:-43988770 | Msa0852760:CDS |
| GACTGATAGAAGATCAGGAT+TGG | 0.553613 | 5_4:+43988971 | None:intergenic |
| TCAATCAGCTAGAAAAGCAT+GGG | 0.553781 | 5_4:-43994711 | Msa0852760:CDS |
| TGGAAATATTGGTAAGCCAT+GGG | 0.558920 | 5_4:-43994204 | Msa0852760:CDS |
| AGTACTTGGCTTCCTCACAC+TGG | 0.560586 | 5_4:-43991153 | Msa0852760:CDS |
| TACTTCAGCCAAACTATCAA+AGG | 0.561706 | 5_4:-43989092 | Msa0852760:intron |
| ACAAGTATGCAATTGTTGAA+AGG | 0.562809 | 5_4:+43990925 | None:intergenic |
| GTCGTCGACAACAGTGATAG+AGG | 0.575062 | 5_4:-43988951 | Msa0852760:CDS |
| CATATCATTCAATTATCATG+TGG | 0.602160 | 5_4:-43994764 | Msa0852760:CDS |
| ATATAACCTCTGATTCAGGT+TGG | 0.604410 | 5_4:-43994270 | Msa0852760:CDS |
| CCTCGTATAACTTCCAAGCA+AGG | 0.607945 | 5_4:+43991322 | None:intergenic |
| AGTTGATATAGTAAAGTGCA+TGG | 0.624012 | 5_4:-43994107 | Msa0852760:CDS |
| CAGCGTCCAACCTGAATCAG+AGG | 0.624851 | 5_4:+43994264 | None:intergenic |
| GCTTATTGAATATCTACATG+AGG | 0.633553 | 5_4:-43993610 | Msa0852760:CDS |
| TTTGCAGTGTCGGTCACACG+TGG | 0.634009 | 5_4:-43991221 | Msa0852760:CDS |
| GTGCCGATAGAAGTCTACAT+AGG | 0.638955 | 5_4:-43991199 | Msa0852760:CDS |
| TGGAAATAACATGTTGCACG+TGG | 0.640608 | 5_4:-43988823 | Msa0852760:CDS |
| GAATTGTCCAAGCCAGTGTG+AGG | 0.658258 | 5_4:+43991141 | None:intergenic |
| AATCTAGATAAAGTGCAGCA+AGG | 0.660792 | 5_4:-43994647 | Msa0852760:intron |
| CCTTGCTTGGAAGTTATACG+AGG | 0.669085 | 5_4:-43991322 | Msa0852760:CDS |
| TAGCGGTAGCCAAAAGAACA+GGG | 0.671079 | 5_4:+43994020 | None:intergenic |
| GTTCATAAATGCTATGAGGG+AGG | 0.689067 | 5_4:-43988994 | Msa0852760:CDS |
| TCATGTGGACGACAGATTCG+GGG | 0.710590 | 5_4:-43994749 | Msa0852760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTTGGTAAAATATT+TGG | - | chr5_4:43989060-43989079 | Msa0852760:CDS | 10.0% |
| !! | AAAAAAATTGAGATATAAAA+TGG | - | chr5_4:43990517-43990536 | Msa0852760:intron | 10.0% |
| !!! | AATATAATTCATTTGTTTTA+AGG | - | chr5_4:43992805-43992824 | Msa0852760:intron | 10.0% |
| !!! | ATTTTAATGTTAAATTTAGT+TGG | + | chr5_4:43993890-43993909 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGAACTATTAAAT+AGG | - | chr5_4:43994318-43994337 | Msa0852760:CDS | 10.0% |
| !! | AAAGAAATGAAGATAATATA+AGG | - | chr5_4:43989159-43989178 | Msa0852760:intron | 15.0% |
| !!! | TAATTTATTTTCAAACCAAT+TGG | + | chr5_4:43989813-43989832 | None:intergenic | 15.0% |
| !! | TAAAACAATAGAAGAATATA+TGG | - | chr5_4:43989904-43989923 | Msa0852760:intron | 15.0% |
| !! | AAATAGATCAATTATATAGT+GGG | + | chr5_4:43990162-43990181 | None:intergenic | 15.0% |
| !! | AAAATAGATCAATTATATAG+TGG | + | chr5_4:43990163-43990182 | None:intergenic | 15.0% |
| !!! | AGTATCAATTTTCTTTATTT+AGG | + | chr5_4:43990296-43990315 | None:intergenic | 15.0% |
| !! | TATATATATATATAGATGGT+GGG | + | chr5_4:43991380-43991399 | None:intergenic | 15.0% |
| !! | ATATATATATATATAGATGG+TGG | + | chr5_4:43991381-43991400 | None:intergenic | 15.0% |
| !! | AAACAAATGAATTATATTGT+TGG | + | chr5_4:43992803-43992822 | None:intergenic | 15.0% |
| !!! | TTTTCCTGCAAAATAATATT+TGG | - | chr5_4:43989048-43989067 | Msa0852760:CDS | 20.0% |
| !!! | TTTACCAAATATTATTTTGC+AGG | + | chr5_4:43989055-43989074 | None:intergenic | 20.0% |
| !! | ATATTTGGTAAAATATTTGG+TGG | - | chr5_4:43989063-43989082 | Msa0852760:CDS | 20.0% |
| !!! | ATGCATATTTAAAACGTAAA+TGG | - | chr5_4:43989220-43989239 | Msa0852760:intron | 20.0% |
| !!! | AAAGTATCAACGAAATAAAT+TGG | - | chr5_4:43989312-43989331 | Msa0852760:intron | 20.0% |
| !! | AAGTATCAACGAAATAAATT+GGG | - | chr5_4:43989313-43989332 | Msa0852760:intron | 20.0% |
| !!! | GTTAAGCAATTTATTTTTAG+AGG | - | chr5_4:43989764-43989783 | Msa0852760:intron | 20.0% |
| !!! | CAATTTATTTTTAGAGGATT+TGG | - | chr5_4:43989770-43989789 | Msa0852760:intron | 20.0% |
| !!! | TTTCTTTATTTAGGAACAAT+TGG | + | chr5_4:43990287-43990306 | None:intergenic | 20.0% |
| !!! | GTTACATTTGAACAATTTTT+AGG | - | chr5_4:43990327-43990346 | Msa0852760:intron | 20.0% |
| !! | GTCAATAACATTAAAAAGAA+AGG | - | chr5_4:43990451-43990470 | Msa0852760:intron | 20.0% |
| !! | TAAAAAGAAAGGTAAATTTG+AGG | - | chr5_4:43990462-43990481 | Msa0852760:intron | 20.0% |
| !!! | TCAATTTTTTTAGCGATTAT+TGG | + | chr5_4:43990508-43990527 | None:intergenic | 20.0% |
| !!! | TTTTACTTTCAACAAATCTT+GGG | + | chr5_4:43990778-43990797 | None:intergenic | 20.0% |
| !!! | TTTTTACTTTCAACAAATCT+TGG | + | chr5_4:43990779-43990798 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCCATTCATTTT+CGG | + | chr5_4:43990901-43990920 | None:intergenic | 20.0% |
| !!! | AACATTTCTTTTACAATAGT+TGG | - | chr5_4:43991266-43991285 | Msa0852760:CDS | 20.0% |
| !!! | GAAATTTTTATAGGTGAATT+AGG | + | chr5_4:43991538-43991557 | None:intergenic | 20.0% |
| !! | AAATGTTAATACAAAAGGTA+GGG | + | chr5_4:43992160-43992179 | None:intergenic | 20.0% |
| !! | TAAATGTTAATACAAAAGGT+AGG | + | chr5_4:43992161-43992180 | None:intergenic | 20.0% |
| !! | TGGATAAATGTTAATACAAA+AGG | + | chr5_4:43992165-43992184 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAGAATTTCCATT+CGG | + | chr5_4:43992195-43992214 | None:intergenic | 20.0% |
| !!! | ATTTTACAAGTGTATCATTA+TGG | + | chr5_4:43992589-43992608 | None:intergenic | 20.0% |
| !! | ATGATACACTTGTAAAATTA+TGG | - | chr5_4:43992591-43992610 | Msa0852760:intron | 20.0% |
| !!! | TTTGATTTTGACAATATCTT+TGG | + | chr5_4:43993034-43993053 | None:intergenic | 20.0% |
| !!! | TTTTGACATTAATCACTAAA+AGG | - | chr5_4:43993063-43993082 | Msa0852760:intron | 20.0% |
| !! | TTATTTGAAAAGATCGAAAT+AGG | + | chr5_4:43993151-43993170 | None:intergenic | 20.0% |
| !! | TAATATTATTTGGAAATCAG+TGG | + | chr5_4:43993180-43993199 | None:intergenic | 20.0% |
| !!! | GTTTGGTTCTTAATATTATT+TGG | + | chr5_4:43993190-43993209 | None:intergenic | 20.0% |
| !!! | ATCATTTAGTACAATTTGTT+GGG | + | chr5_4:43993238-43993257 | None:intergenic | 20.0% |
| !!! | TTGTTAAATGTGATTTTTTG+TGG | + | chr5_4:43993426-43993445 | None:intergenic | 20.0% |
| !! | TAAATGAATTATCTAGGTTT+GGG | + | chr5_4:43993828-43993847 | None:intergenic | 20.0% |
| !! | ATTGTGAATAATATTAGAGA+GGG | + | chr5_4:43994017-43994036 | None:intergenic | 20.0% |
| !!! | TTTTCCACAAATATTGTTAA+AGG | + | chr5_4:43994138-43994157 | None:intergenic | 20.0% |
| !! | TTTAACAATATTTGTGGAAA+AGG | - | chr5_4:43994137-43994156 | Msa0852760:CDS | 20.0% |
| !! | AATCACCTCAAAAAAAATAT+TGG | - | chr5_4:43994169-43994188 | Msa0852760:CDS | 20.0% |
| !! | ATCACCTCAAAAAAAATATT+GGG | - | chr5_4:43994170-43994189 | Msa0852760:CDS | 20.0% |
| ! | CATATCATTCAATTATCATG+TGG | - | chr5_4:43988857-43988876 | Msa0852760:CDS | 25.0% |
| ! | TATACACCTTAATAGAGAAA+AGG | - | chr5_4:43989101-43989120 | Msa0852760:intron | 25.0% |
| !! | GTATATCCTTTTCTCTATTA+AGG | + | chr5_4:43989110-43989129 | None:intergenic | 25.0% |
| !!! | AGATAATATAAGGTGTTGAT+TGG | - | chr5_4:43989169-43989188 | Msa0852760:intron | 25.0% |
| !! | ATATTTAAAACGTAAATGGC+AGG | - | chr5_4:43989224-43989243 | Msa0852760:intron | 25.0% |
| ! | TATTTCGTTGATACTTTCAA+TGG | + | chr5_4:43989309-43989328 | None:intergenic | 25.0% |
| ! | ATAAATTGGGATGATGTATA+TGG | - | chr5_4:43989326-43989345 | Msa0852760:intron | 25.0% |
| ! | TGTGAAAAATGTGGAAATAT+TGG | - | chr5_4:43989406-43989425 | Msa0852760:intron | 25.0% |
| !!! | ATCAACTTTTTCATTGTAAC+AGG | + | chr5_4:43989501-43989520 | None:intergenic | 25.0% |
| ! | AAATTCGTGAATCATTGTTA+AGG | + | chr5_4:43989679-43989698 | None:intergenic | 25.0% |
| ! | GATATTCAATAAGCAGATTT+GGG | + | chr5_4:43990005-43990024 | None:intergenic | 25.0% |
| ! | AGATATTCAATAAGCAGATT+TGG | + | chr5_4:43990006-43990025 | None:intergenic | 25.0% |
| !! | CAATTATATAGTGGGATAAA+AGG | + | chr5_4:43990154-43990173 | None:intergenic | 25.0% |
| !! | TGTAGTGTATGACAATTTTT+GGG | + | chr5_4:43990238-43990257 | None:intergenic | 25.0% |
| ! | GTTTGCTTAATCTTTAGTAA+TGG | + | chr5_4:43990554-43990573 | None:intergenic | 25.0% |
| ! | TTTACTTTCAACAAATCTTG+GGG | + | chr5_4:43990777-43990796 | None:intergenic | 25.0% |
| ! | AATGAATGGAAAAAAAACCA+TGG | - | chr5_4:43990903-43990922 | Msa0852760:CDS | 25.0% |
| ! | AAACTACATAGGCTATTATT+GGG | + | chr5_4:43990940-43990959 | None:intergenic | 25.0% |
| ! | CACCACAGTATTTAAATAAA+CGG | - | chr5_4:43991013-43991032 | Msa0852760:intron | 25.0% |
| !!! | CGTGTTTTTGTTTCAAAAAT+TGG | + | chr5_4:43991104-43991123 | None:intergenic | 25.0% |
| ! | TTTGATCTGTATTTGTAATC+TGG | + | chr5_4:43991198-43991217 | None:intergenic | 25.0% |
| ! | AAATGGTTTAGATATTTGCA+TGG | + | chr5_4:43991655-43991674 | None:intergenic | 25.0% |
| !!! | ACTTGTACACTTTTGAAAAA+TGG | + | chr5_4:43991672-43991691 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTGTTTTGGTTTT+TGG | + | chr5_4:43991842-43991861 | None:intergenic | 25.0% |
| !!! | GGTATAACTTGTTTTTGTTT+TGG | + | chr5_4:43991849-43991868 | None:intergenic | 25.0% |
| ! | TTCAAGTACGTTATAATTTG+TGG | + | chr5_4:43992020-43992039 | None:intergenic | 25.0% |
| ! | CATTTGATATGTTGATGTTA+TGG | + | chr5_4:43992075-43992094 | None:intergenic | 25.0% |
| !!! | TGATCTGTGTTTATTTTTAC+TGG | - | chr5_4:43992653-43992672 | Msa0852760:intron | 25.0% |
| !! | TTTGTTGGTAGAAATATCTT+CGG | - | chr5_4:43992762-43992781 | Msa0852760:intron | 25.0% |
| ! | TCATTCAAAATGTGTTTGTT+TGG | + | chr5_4:43993207-43993226 | None:intergenic | 25.0% |
| ! | GATCATTTAGTACAATTTGT+TGG | + | chr5_4:43993239-43993258 | None:intergenic | 25.0% |
| ! | ATAATTAACATTCCTCAGTA+GGG | + | chr5_4:43993480-43993499 | None:intergenic | 25.0% |
| ! | AATAATTAACATTCCTCAGT+AGG | + | chr5_4:43993481-43993500 | None:intergenic | 25.0% |
| !! | TTAAATTAACTTGACTGGAA+TGG | + | chr5_4:43993644-43993663 | None:intergenic | 25.0% |
| !! | AGTGATTAAATTAACTTGAC+TGG | + | chr5_4:43993649-43993668 | None:intergenic | 25.0% |
| !!! | TTTAACTACAATTGTTTTGC+AGG | + | chr5_4:43993730-43993749 | None:intergenic | 25.0% |
| ! | CTAAATGAATTATCTAGGTT+TGG | + | chr5_4:43993829-43993848 | None:intergenic | 25.0% |
| ! | CAAACCTAGATAATTCATTT+AGG | - | chr5_4:43993827-43993846 | Msa0852760:intron | 25.0% |
| ! | GATTGTGAATAATATTAGAG+AGG | + | chr5_4:43994018-43994037 | None:intergenic | 25.0% |
| ! | TCAAAAAAAATATTGGGAGA+GGG | - | chr5_4:43994176-43994195 | Msa0852760:CDS | 25.0% |
| ! | ATTAATCTCTTACAAGTAGT+TGG | - | chr5_4:43994235-43994254 | Msa0852760:CDS | 25.0% |
| !! | CATTAAATCCTTTGATAGTT+TGG | + | chr5_4:43994540-43994559 | None:intergenic | 25.0% |
| !! | GAACTCAATTATTCCATTTT+GGG | + | chr5_4:43994611-43994630 | None:intergenic | 25.0% |
| !! | TGAACTCAATTATTCCATTT+TGG | + | chr5_4:43994612-43994631 | None:intergenic | 25.0% |
| TTACATGTTATGGATCGATA+TGG | - | chr5_4:43988744-43988763 | Msa0852760:CDS | 30.0% | |
| GGATCGATATGGAAAATATT+TGG | - | chr5_4:43988755-43988774 | Msa0852760:CDS | 30.0% | |
| CGATATGGAAAATATTTGGA+AGG | - | chr5_4:43988759-43988778 | Msa0852760:CDS | 30.0% | |
| TGGAAAATATTTGGAAGGAT+TGG | - | chr5_4:43988764-43988783 | Msa0852760:CDS | 30.0% | |
| GAAAAGGATATACATGAGAT+AGG | - | chr5_4:43989117-43989136 | Msa0852760:intron | 30.0% | |
| TGCAATATAAAAAGCTACTG+AGG | - | chr5_4:43989264-43989283 | Msa0852760:intron | 30.0% | |
| ATATAAAAAGCTACTGAGGA+TGG | - | chr5_4:43989268-43989287 | Msa0852760:intron | 30.0% | |
| ! | TATCTTGCTTTGTTACAAAC+TGG | + | chr5_4:43989448-43989467 | None:intergenic | 30.0% |
| ! | AGTTGATATAGTAAAGTGCA+TGG | - | chr5_4:43989514-43989533 | Msa0852760:intron | 30.0% |
| TGTATCACGGCTAAAATATT+TGG | - | chr5_4:43989713-43989732 | Msa0852760:intron | 30.0% | |
| ! | AGCAAATTTAGAGTTCCAAT+TGG | - | chr5_4:43989795-43989814 | Msa0852760:intron | 30.0% |
| !!! | TTGTTGACTTTTGAAATGTG+TGG | - | chr5_4:43989938-43989957 | Msa0852760:intron | 30.0% |
| GCTTATTGAATATCTACATG+AGG | - | chr5_4:43990011-43990030 | Msa0852760:intron | 30.0% | |
| !!! | AATTAAGCCGGAGAATTTTT+TGG | + | chr5_4:43990040-43990059 | None:intergenic | 30.0% |
| ! | CTGTAGTGTATGACAATTTT+TGG | + | chr5_4:43990239-43990258 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTGCTTAGGATA+TGG | + | chr5_4:43990810-43990829 | None:intergenic | 30.0% |
| !!! | TTCTAGTTGTTTTTGTGCTT+AGG | + | chr5_4:43990816-43990835 | None:intergenic | 30.0% |
| ! | TTTTTCCATTCATTTTCGGT+TGG | + | chr5_4:43990897-43990916 | None:intergenic | 30.0% |
| CAAACTACATAGGCTATTAT+TGG | + | chr5_4:43990941-43990960 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTGCAAACTACAT+AGG | + | chr5_4:43990951-43990970 | None:intergenic | 30.0% |
| GACCGTTTATTTAAATACTG+TGG | + | chr5_4:43991018-43991037 | None:intergenic | 30.0% | |
| ATCTGTATTTGTAATCTGGT+TGG | + | chr5_4:43991194-43991213 | None:intergenic | 30.0% | |
| AAATACAGATCAAAGACAGA+AGG | - | chr5_4:43991204-43991223 | Msa0852760:CDS | 30.0% | |
| ! | GAAGATTTTGTGTGAGATAT+TGG | + | chr5_4:43991245-43991264 | None:intergenic | 30.0% |
| !! | TATGTCAATGTTTCTGGAAT+TGG | + | chr5_4:43991582-43991601 | None:intergenic | 30.0% |
| !! | TGTTAAGCTTTTTCTAGACT+TGG | + | chr5_4:43991760-43991779 | None:intergenic | 30.0% |
| TGGGTTGTATGACTATTATA+AGG | + | chr5_4:43991797-43991816 | None:intergenic | 30.0% | |
| !! | TGCACGTTATTTTCTGTTTT+TGG | + | chr5_4:43991870-43991889 | None:intergenic | 30.0% |
| GAAACTAATAACTCTTTCGT+TGG | + | chr5_4:43991960-43991979 | None:intergenic | 30.0% | |
| ! | TGGCTTTTGATACATATGTT+AGG | + | chr5_4:43992000-43992019 | None:intergenic | 30.0% |
| ! | TTTATCCATTCTTTTCCGAA+TGG | - | chr5_4:43992177-43992196 | Msa0852760:intron | 30.0% |
| AATTTCCATTCGGAAAAGAA+TGG | + | chr5_4:43992185-43992204 | None:intergenic | 30.0% | |
| AAGTGTATCATTATGGATGA+TGG | + | chr5_4:43992582-43992601 | None:intergenic | 30.0% | |
| CACTTGTAAAATTATGGATG+AGG | - | chr5_4:43992597-43992616 | Msa0852760:intron | 30.0% | |
| !!! | TTTTACTGGTTGATTTGTTC+AGG | - | chr5_4:43992667-43992686 | Msa0852760:intron | 30.0% |
| ACAAGTATGCAATTGTTGAA+AGG | + | chr5_4:43992699-43992718 | None:intergenic | 30.0% | |
| TTCAACAATTGCATACTTGT+TGG | - | chr5_4:43992699-43992718 | Msa0852760:intron | 30.0% | |
| !!! | CTTAGGTAAGGTTTTTTTGT+TGG | - | chr5_4:43992747-43992766 | Msa0852760:intron | 30.0% |
| GAGAAAAACAAGCTAAGTTA+AGG | - | chr5_4:43992980-43992999 | Msa0852760:intron | 30.0% | |
| TAAGTTAAGGCAACTATGTA+AGG | - | chr5_4:43992993-43993012 | Msa0852760:intron | 30.0% | |
| !! | GATTTTGACAATATCTTTGG+AGG | + | chr5_4:43993031-43993050 | None:intergenic | 30.0% |
| !! | TAGTACAATTTGTTGGGTTA+GGG | + | chr5_4:43993232-43993251 | None:intergenic | 30.0% |
| !! | TTAGTACAATTTGTTGGGTT+AGG | + | chr5_4:43993233-43993252 | None:intergenic | 30.0% |
| !!! | TGATTTTTTGTGGTAGAATC+TGG | + | chr5_4:43993416-43993435 | None:intergenic | 30.0% |
| !! | TCAGGTTTTGTGGTTAAAAA+CGG | + | chr5_4:43993596-43993615 | None:intergenic | 30.0% |
| CAGTAATTCGATCAATAATC+AGG | + | chr5_4:43993614-43993633 | None:intergenic | 30.0% | |
| ATTTACTTGGGAGAAGTTAA+CGG | + | chr5_4:43993769-43993788 | None:intergenic | 30.0% | |
| GTAGCCTAAATGAATTATCT+AGG | + | chr5_4:43993834-43993853 | None:intergenic | 30.0% | |
| !! | ATTTAGTTGGCTTTATGAGT+TGG | + | chr5_4:43993877-43993896 | None:intergenic | 30.0% |
| AGTTTATGGTATAAGGTGAT+GGG | + | chr5_4:43994107-43994126 | None:intergenic | 30.0% | |
| CACAAATATTGTTAAAGGAG+AGG | + | chr5_4:43994133-43994152 | None:intergenic | 30.0% | |
| CTCTCCTTTAACAATATTTG+TGG | - | chr5_4:43994131-43994150 | Msa0852760:CDS | 30.0% | |
| !!! | CTCTCCCAATATTTTTTTTG+AGG | + | chr5_4:43994177-43994196 | None:intergenic | 30.0% |
| CTCAAAAAAAATATTGGGAG+AGG | - | chr5_4:43994175-43994194 | Msa0852760:CDS | 30.0% | |
| ATATAGCCATTATGAAGTTC+TGG | - | chr5_4:43994495-43994514 | Msa0852760:intron | 30.0% | |
| TATAGCCATTATGAAGTTCT+GGG | - | chr5_4:43994496-43994515 | Msa0852760:intron | 30.0% | |
| ATATTCCCAGAACTTCATAA+TGG | + | chr5_4:43994504-43994523 | None:intergenic | 30.0% | |
| TTGAGTTCATAAATGCTATG+AGG | - | chr5_4:43994623-43994642 | Msa0852760:intron | 30.0% | |
| TGAGTTCATAAATGCTATGA+GGG | - | chr5_4:43994624-43994643 | Msa0852760:intron | 30.0% | |
| ! | CATTCAGAAAGTATATGAGT+TGG | + | chr5_4:43994738-43994757 | None:intergenic | 30.0% |
| CAACTCATATACTTTCTGAA+TGG | - | chr5_4:43994736-43994755 | Msa0852760:CDS | 30.0% | |
| CATATACTTTCTGAATGGAT+TGG | - | chr5_4:43994741-43994760 | Msa0852760:CDS | 30.0% | |
| CTGTCATTGTAATTCAATGA+AGG | + | chr5_4:43994838-43994857 | None:intergenic | 30.0% | |
| CTTCATTGAATTACAATGAC+AGG | - | chr5_4:43994836-43994855 | Msa0852760:CDS | 30.0% | |
| ! | TGTTTCTGTAGTTGAAAGAG+AGG | - | chr5_4:43988802-43988821 | Msa0852760:CDS | 35.0% |
| TAGTTGAAAGAGAGGTTTCA+TGG | - | chr5_4:43988810-43988829 | Msa0852760:CDS | 35.0% | |
| TTCAATCAGCTAGAAAAGCA+TGG | - | chr5_4:43988909-43988928 | Msa0852760:CDS | 35.0% | |
| ! | TCAATCAGCTAGAAAAGCAT+GGG | - | chr5_4:43988910-43988929 | Msa0852760:CDS | 35.0% |
| CATCACTTGTCAACAACATA+CGG | - | chr5_4:43988935-43988954 | Msa0852760:CDS | 35.0% | |
| AATCTAGATAAAGTGCAGCA+AGG | - | chr5_4:43988974-43988993 | Msa0852760:CDS | 35.0% | |
| TAAGGTGTATACATCCAATG+AGG | + | chr5_4:43989092-43989111 | None:intergenic | 35.0% | |
| ATATAACCTCTGATTCAGGT+TGG | - | chr5_4:43989351-43989370 | Msa0852760:intron | 35.0% | |
| TGGAAATATTGGTAAGCCAT+GGG | - | chr5_4:43989417-43989436 | Msa0852760:intron | 35.0% | |
| CATTTCTTTGTGTCCATTAG+CGG | + | chr5_4:43989621-43989640 | None:intergenic | 35.0% | |
| TCATTGTTAAGGACTTCTAC+AGG | + | chr5_4:43989668-43989687 | None:intergenic | 35.0% | |
| ! | ATATGATAGATGTGGCTTTG+AGG | - | chr5_4:43989965-43989984 | Msa0852760:intron | 35.0% |
| GAGGAATCCAAAAAATTCTC+CGG | - | chr5_4:43990030-43990049 | Msa0852760:intron | 35.0% | |
| TATTGACGATACAGAAAGTG+TGG | + | chr5_4:43990438-43990457 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTAGGATATGGT+AGG | + | chr5_4:43990806-43990825 | None:intergenic | 35.0% |
| AGATTGTATGTTCTGTTGTG+TGG | + | chr5_4:43990848-43990867 | None:intergenic | 35.0% | |
| AGAAACCAACCGAAAATGAA+TGG | - | chr5_4:43990889-43990908 | Msa0852760:intron | 35.0% | |
| !! | TTATTCGCGATTTTGATGGA+AGG | + | chr5_4:43991040-43991059 | None:intergenic | 35.0% |
| ! | GTGTTTATTCGCGATTTTGA+TGG | + | chr5_4:43991044-43991063 | None:intergenic | 35.0% |
| AACTATGTGGGAAAGACATA+GGG | + | chr5_4:43991305-43991324 | None:intergenic | 35.0% | |
| AGGAATCATCATCATAAAGC+TGG | + | chr5_4:43991518-43991537 | None:intergenic | 35.0% | |
| CTTAGCTATGTCAATGTTTC+TGG | + | chr5_4:43991588-43991607 | None:intergenic | 35.0% | |
| CTTTAGATGTTGAAGGTCTT+GGG | + | chr5_4:43991816-43991835 | None:intergenic | 35.0% | |
| TTGGATCCTTTAGATGTTGA+AGG | + | chr5_4:43991823-43991842 | None:intergenic | 35.0% | |
| TTAGTTTCTCTACGTGAATG+AGG | - | chr5_4:43991972-43991991 | Msa0852760:intron | 35.0% | |
| TACAGGTTTAAGCGTAGAAA+AGG | - | chr5_4:43992333-43992352 | Msa0852760:intron | 35.0% | |
| GGAATCGGGAATATTATAGT+TGG | + | chr5_4:43992368-43992387 | None:intergenic | 35.0% | |
| AAAATTCGCAATGTCGGAAT+CGG | + | chr5_4:43992383-43992402 | None:intergenic | 35.0% | |
| AGTCCTATGTAGACTTCTAT+CGG | + | chr5_4:43992428-43992447 | None:intergenic | 35.0% | |
| !! | ACTCTTCCTCTAAAGCTATT+GGG | - | chr5_4:43992505-43992524 | Msa0852760:intron | 35.0% |
| !! | AACATACCCAATAGCTTTAG+AGG | + | chr5_4:43992514-43992533 | None:intergenic | 35.0% |
| AGGCAACTATGTAAGGTATA+TGG | - | chr5_4:43993000-43993019 | Msa0852760:intron | 35.0% | |
| !! | AGTACAATTTGTTGGGTTAG+GGG | + | chr5_4:43993231-43993250 | None:intergenic | 35.0% |
| TTGCCAAGTTATCCTTAGTT+GGG | - | chr5_4:43993521-43993540 | Msa0852760:CDS | 35.0% | |
| ! | CGATCAATAATCAGGTTTTG+TGG | + | chr5_4:43993606-43993625 | None:intergenic | 35.0% |
| ! | ATTAACTTGACTGGAATGGA+AGG | + | chr5_4:43993640-43993659 | None:intergenic | 35.0% |
| !! | ACTACAATTGTTTTGCAGGT+GGG | + | chr5_4:43993726-43993745 | None:intergenic | 35.0% |
| !! | AACTACAATTGTTTTGCAGG+TGG | + | chr5_4:43993727-43993746 | None:intergenic | 35.0% |
| TTTACTTGGGAGAAGTTAAC+GGG | + | chr5_4:43993768-43993787 | None:intergenic | 35.0% | |
| ! | TGAGTTGGCGGAAAATAAAT+TGG | + | chr5_4:43993862-43993881 | None:intergenic | 35.0% |
| GGGTGGTTGTTAGATAATAT+TGG | + | chr5_4:43993975-43993994 | None:intergenic | 35.0% | |
| AATAATATTAGAGAGGGAGC+TGG | + | chr5_4:43994011-43994030 | None:intergenic | 35.0% | |
| ! | AATGAGGGAAGTTGTGTTTT+GGG | + | chr5_4:43994067-43994086 | None:intergenic | 35.0% |
| GAGTTTATGGTATAAGGTGA+TGG | + | chr5_4:43994108-43994127 | None:intergenic | 35.0% | |
| GAGGTAGAGTTTATGGTATA+AGG | + | chr5_4:43994114-43994133 | None:intergenic | 35.0% | |
| TAAAGGAGAGGTAGAGTTTA+TGG | + | chr5_4:43994121-43994140 | None:intergenic | 35.0% | |
| GAGATTAATCTCGAGTACTT+AGG | + | chr5_4:43994224-43994243 | None:intergenic | 35.0% | |
| CTCTTACAAGTAGTTGGAAA+AGG | - | chr5_4:43994241-43994260 | Msa0852760:CDS | 35.0% | |
| ! | ACACTCGAGCTTTAATATGA+AGG | - | chr5_4:43994274-43994293 | Msa0852760:CDS | 35.0% |
| TACTTCAGCCAAACTATCAA+AGG | - | chr5_4:43994529-43994548 | Msa0852760:intron | 35.0% | |
| !! | ACAGTGATAGAGGCATATTT+TGG | - | chr5_4:43994680-43994699 | Msa0852760:CDS | 35.0% |
| AACTACAGAGAGAACTTCAA+TGG | - | chr5_4:43994875-43994894 | Msa0852760:CDS | 35.0% | |
| TGAAAGAGAGGTTTCATGGA+AGG | - | chr5_4:43988814-43988833 | Msa0852760:CDS | 40.0% | |
| TATCATGTGGACGACAGATT+CGG | - | chr5_4:43988870-43988889 | Msa0852760:CDS | 40.0% | |
| ! | ATATTTGGTGGACACCTCAT+TGG | - | chr5_4:43989075-43989094 | Msa0852760:CDS | 40.0% |
| ACGTAAATGGCAGGTGATAA+TGG | - | chr5_4:43989233-43989252 | Msa0852760:intron | 40.0% | |
| GGTCATATAACCTCTGATTC+AGG | - | chr5_4:43989347-43989366 | Msa0852760:intron | 40.0% | |
| CTTCACATTGCAGTAATTGC+TGG | - | chr5_4:43989380-43989399 | Msa0852760:intron | 40.0% | |
| ! | TGCTGGAAGTGTGAAAAATG+TGG | - | chr5_4:43989397-43989416 | Msa0852760:intron | 40.0% |
| GTGGAAATATTGGTAAGCCA+TGG | - | chr5_4:43989416-43989435 | Msa0852760:intron | 40.0% | |
| ! | TGGAGAAATCCCTGTTCTTT+TGG | - | chr5_4:43989592-43989611 | Msa0852760:intron | 40.0% |
| ! | AAGGACTTCTACAGGAGTTT+TGG | + | chr5_4:43989660-43989679 | None:intergenic | 40.0% |
| GTGGCTTGATATGATAGATG+TGG | - | chr5_4:43989957-43989976 | Msa0852760:intron | 40.0% | |
| TTTAGCCAACGCAATTAAGC+CGG | + | chr5_4:43990052-43990071 | None:intergenic | 40.0% | |
| ! | AGCTGAATCGACTTCTACTT+GGG | + | chr5_4:43990089-43990108 | None:intergenic | 40.0% |
| ! | TAGCTGAATCGACTTCTACT+TGG | + | chr5_4:43990090-43990109 | None:intergenic | 40.0% |
| !! | TGTATGACAATTTTTGGGCG+CGG | + | chr5_4:43990233-43990252 | None:intergenic | 40.0% |
| ! | TGTTACTAGTTTCTGAGCAG+AGG | - | chr5_4:43990628-43990647 | Msa0852760:intron | 40.0% |
| TAGTTTCTGAGCAGAGGAAA+GGG | - | chr5_4:43990634-43990653 | Msa0852760:intron | 40.0% | |
| TACAGATCAAAGACAGAAGG+AGG | - | chr5_4:43991207-43991226 | Msa0852760:CDS | 40.0% | |
| CAACTATGTGGGAAAGACAT+AGG | + | chr5_4:43991306-43991325 | None:intergenic | 40.0% | |
| CTATGTCTTTCCCACATAGT+TGG | - | chr5_4:43991304-43991323 | Msa0852760:CDS | 40.0% | |
| TTTCCCACATAGTTGGCAAT+TGG | - | chr5_4:43991311-43991330 | Msa0852760:CDS | 40.0% | |
| ATGCCAATTGCCAACTATGT+GGG | + | chr5_4:43991317-43991336 | None:intergenic | 40.0% | |
| AGAGAGTTGCAAGAGTTAGA+TGG | + | chr5_4:43991346-43991365 | None:intergenic | 40.0% | |
| CCTTTAGATGTTGAAGGTCT+TGG | + | chr5_4:43991817-43991836 | None:intergenic | 40.0% | |
| CCAAGACCTTCAACATCTAA+AGG | - | chr5_4:43991814-43991833 | Msa0852760:intron | 40.0% | |
| GGACTATACAAGTGAAAGCA+GGG | + | chr5_4:43991919-43991938 | None:intergenic | 40.0% | |
| TGGACTATACAAGTGAAAGC+AGG | + | chr5_4:43991920-43991939 | None:intergenic | 40.0% | |
| !! | TGGTGAAACTTCTGGTTCTT+TGG | + | chr5_4:43991940-43991959 | None:intergenic | 40.0% |
| ! | TCTTTCGTTGGTGAAACTTC+TGG | + | chr5_4:43991948-43991967 | None:intergenic | 40.0% |
| TCATGTTCTACTACCTTGCT+TGG | - | chr5_4:43992286-43992305 | Msa0852760:intron | 40.0% | |
| ! | ACGAGGAGTTTTTGCTTTAC+AGG | - | chr5_4:43992316-43992335 | Msa0852760:intron | 40.0% |
| AAATTCGCAATGTCGGAATC+GGG | + | chr5_4:43992382-43992401 | None:intergenic | 40.0% | |
| CACTGCAAAATTCGCAATGT+CGG | + | chr5_4:43992389-43992408 | None:intergenic | 40.0% | |
| ! | CATTGCGAATTTTGCAGTGT+CGG | - | chr5_4:43992390-43992409 | Msa0852760:intron | 40.0% |
| GCGAAATGTTTGTCAGTACT+TGG | - | chr5_4:43992454-43992473 | Msa0852760:intron | 40.0% | |
| !! | GACTCTTCCTCTAAAGCTAT+TGG | - | chr5_4:43992504-43992523 | Msa0852760:intron | 40.0% |
| AGCTATTGGGTATGTTATGC+TGG | - | chr5_4:43992518-43992537 | Msa0852760:intron | 40.0% | |
| AATCAAGTGCAAGCAGTACA+GGG | + | chr5_4:43992557-43992576 | None:intergenic | 40.0% | |
| AAATCAAGTGCAAGCAGTAC+AGG | + | chr5_4:43992558-43992577 | None:intergenic | 40.0% | |
| ! | ATTATATTGTTGGCTGCAGC+TGG | + | chr5_4:43992793-43992812 | None:intergenic | 40.0% |
| ! | GCGCATTTTTCATCACAAAG+AGG | + | chr5_4:43993129-43993148 | None:intergenic | 40.0% |
| CAACTAAGGATAACTTGGCA+AGG | + | chr5_4:43993522-43993541 | None:intergenic | 40.0% | |
| CTTGCCAAGTTATCCTTAGT+TGG | - | chr5_4:43993520-43993539 | Msa0852760:CDS | 40.0% | |
| AGACCCAACTAAGGATAACT+TGG | + | chr5_4:43993527-43993546 | None:intergenic | 40.0% | |
| AGTTATCCTTAGTTGGGTCT+CGG | - | chr5_4:43993527-43993546 | Msa0852760:CDS | 40.0% | |
| !! | TACAATTGTTTTGCAGGTGG+GGG | + | chr5_4:43993724-43993743 | None:intergenic | 40.0% |
| !! | CTACAATTGTTTTGCAGGTG+GGG | + | chr5_4:43993725-43993744 | None:intergenic | 40.0% |
| TTACTTGGGAGAAGTTAACG+GGG | + | chr5_4:43993767-43993786 | None:intergenic | 40.0% | |
| TATCTAGGTTTGGGTGTGAA+TGG | + | chr5_4:43993819-43993838 | None:intergenic | 40.0% | |
| !! | TAGTTGGCTTTATGAGTTGG+CGG | + | chr5_4:43993874-43993893 | None:intergenic | 40.0% |
| AAATGAGAACCATCAAGCCA+AGG | - | chr5_4:43993906-43993925 | Msa0852760:intron | 40.0% | |
| ! | GAATGAGGGAAGTTGTGTTT+TGG | + | chr5_4:43994068-43994087 | None:intergenic | 40.0% |
| CTCGATATAGAGAGGAATGA+GGG | + | chr5_4:43994082-43994101 | None:intergenic | 40.0% | |
| GGTTGCATGTTAAATCTCTC+TGG | + | chr5_4:43994203-43994222 | None:intergenic | 40.0% | |
| TAAGTCTCTTCCATTGTGTC+AGG | - | chr5_4:43994448-43994467 | Msa0852760:intron | 40.0% | |
| TTCCATTGTGTCAGGAACAA+AGG | - | chr5_4:43994456-43994475 | Msa0852760:intron | 40.0% | |
| TTCCTTTGTTCCTGACACAA+TGG | + | chr5_4:43994461-43994480 | None:intergenic | 40.0% | |
| ! | ATTTTGGGCTGCATACAACA+TGG | + | chr5_4:43994596-43994615 | None:intergenic | 40.0% |
| ATGTTGTATGCAGCCCAAAA+TGG | - | chr5_4:43994595-43994614 | Msa0852760:intron | 40.0% | |
| GTTCATAAATGCTATGAGGG+AGG | - | chr5_4:43994627-43994646 | Msa0852760:intron | 40.0% | |
| GACTGATAGAAGATCAGGAT+TGG | + | chr5_4:43994653-43994672 | None:intergenic | 40.0% | |
| !! | CTTTCTGAATGGATTGGAGA+AGG | - | chr5_4:43994747-43994766 | Msa0852760:CDS | 40.0% |
| ! | AGATATCGTACTGATGCGTT+TGG | - | chr5_4:43994778-43994797 | Msa0852760:CDS | 40.0% |
| TGGAAATAACATGTTGCACG+TGG | - | chr5_4:43994798-43994817 | Msa0852760:CDS | 40.0% | |
| ATGACAGGTTCAATCCTACT+AGG | - | chr5_4:43994851-43994870 | Msa0852760:CDS | 40.0% | |
| ATCATGTGGACGACAGATTC+GGG | - | chr5_4:43988871-43988890 | Msa0852760:CDS | 45.0% | |
| AAAGCTACTGAGGATGGTGA+AGG | - | chr5_4:43989274-43989293 | Msa0852760:intron | 45.0% | |
| TTACAAACTGGTCGTTCCCA+TGG | + | chr5_4:43989436-43989455 | None:intergenic | 45.0% | |
| ATGACACCGAGAGCGAAATA+GGG | - | chr5_4:43989540-43989559 | Msa0852760:intron | 45.0% | |
| TGTCTTCCCTATTTCGCTCT+CGG | + | chr5_4:43989549-43989568 | None:intergenic | 45.0% | |
| CTGAAGACAGTGAACTCAGA+TGG | - | chr5_4:43989572-43989591 | Msa0852760:intron | 45.0% | |
| TAGCGGTAGCCAAAAGAACA+GGG | + | chr5_4:43989604-43989623 | None:intergenic | 45.0% | |
| TTAGCGGTAGCCAAAAGAAC+AGG | + | chr5_4:43989605-43989624 | None:intergenic | 45.0% | |
| !! | GTTCTTTTGGCTACCGCTAA+TGG | - | chr5_4:43989605-43989624 | Msa0852760:intron | 45.0% |
| GCTTCTTGAGCGATGTATCA+CGG | - | chr5_4:43989700-43989719 | Msa0852760:intron | 45.0% | |
| ATTCTCCGGCTTAATTGCGT+TGG | - | chr5_4:43990044-43990063 | Msa0852760:intron | 45.0% | |
| !! | GTATGACAATTTTTGGGCGC+GGG | + | chr5_4:43990232-43990251 | None:intergenic | 45.0% |
| CTAGTTTCTGAGCAGAGGAA+AGG | - | chr5_4:43990633-43990652 | Msa0852760:intron | 45.0% | |
| AGTTTCTGAGCAGAGGAAAG+GGG | - | chr5_4:43990635-43990654 | Msa0852760:intron | 45.0% | |
| TAGGCTATTATTGGGACGTG+AGG | + | chr5_4:43990932-43990951 | None:intergenic | 45.0% | |
| TGGGAAAGACATAGGGTAAG+GGG | + | chr5_4:43991298-43991317 | None:intergenic | 45.0% | |
| GTGGGAAAGACATAGGGTAA+GGG | + | chr5_4:43991299-43991318 | None:intergenic | 45.0% | |
| TGTGGGAAAGACATAGGGTA+AGG | + | chr5_4:43991300-43991319 | None:intergenic | 45.0% | |
| CATGCCAATTGCCAACTATG+TGG | + | chr5_4:43991318-43991337 | None:intergenic | 45.0% | |
| AGTGAAAGCAGGGAAAGAAG+AGG | + | chr5_4:43991909-43991928 | None:intergenic | 45.0% | |
| CCTCGTATAACTTCCAAGCA+AGG | + | chr5_4:43992302-43992321 | None:intergenic | 45.0% | |
| CCTTGCTTGGAAGTTATACG+AGG | - | chr5_4:43992299-43992318 | Msa0852760:intron | 45.0% | |
| ! | GTGCCGATAGAAGTCTACAT+AGG | - | chr5_4:43992422-43992441 | Msa0852760:intron | 45.0% |
| TTGGGTATGTTATGCTGGTC+TGG | - | chr5_4:43992523-43992542 | Msa0852760:intron | 45.0% | |
| ATCAAGTGCAAGCAGTACAG+GGG | + | chr5_4:43992556-43992575 | None:intergenic | 45.0% | |
| ! | CCTCTAGTTTGAAGCTGGAT+AGG | + | chr5_4:43993393-43993412 | None:intergenic | 45.0% |
| CCTATCCAGCTTCAAACTAG+AGG | - | chr5_4:43993390-43993409 | Msa0852760:intron | 45.0% | |
| !! | GTAGGGTGTGGTTTGTTAGA+AGG | + | chr5_4:43993463-43993482 | None:intergenic | 45.0% |
| TAACAAACCACACCCTACTG+AGG | - | chr5_4:43993465-43993484 | Msa0852760:intron | 45.0% | |
| TAACATTCCTCAGTAGGGTG+TGG | + | chr5_4:43993475-43993494 | None:intergenic | 45.0% | |
| TCTTAACCGAGACCCAACTA+AGG | + | chr5_4:43993536-43993555 | None:intergenic | 45.0% | |
| TACTTGGGAGAAGTTAACGG+GGG | + | chr5_4:43993766-43993785 | None:intergenic | 45.0% | |
| GCGGAGGCGATTATTTACTT+GGG | + | chr5_4:43993781-43993800 | None:intergenic | 45.0% | |
| TGAATGGAGATGCATCGAAG+TGG | + | chr5_4:43993803-43993822 | None:intergenic | 45.0% | |
| !! | ATCCTCTACCCTGTTTTGGA+GGG | + | chr5_4:43993934-43993953 | None:intergenic | 45.0% |
| AATATTGGTCGTGAGCTGAG+TGG | + | chr5_4:43993960-43993979 | None:intergenic | 45.0% | |
| TATTAGAGAGGGAGCTGGTT+TGG | + | chr5_4:43994006-43994025 | None:intergenic | 45.0% | |
| AGGTAGGGGATAAGTTTGGT+CGG | + | chr5_4:43994042-43994061 | None:intergenic | 45.0% | |
| !!! | TTGTGTTTTGGGAGAGGTAG+GGG | + | chr5_4:43994056-43994075 | None:intergenic | 45.0% |
| !!! | GTTGTGTTTTGGGAGAGGTA+GGG | + | chr5_4:43994057-43994076 | None:intergenic | 45.0% |
| !!! | AGTTGTGTTTTGGGAGAGGT+AGG | + | chr5_4:43994058-43994077 | None:intergenic | 45.0% |
| GCTCGATATAGAGAGGAATG+AGG | + | chr5_4:43994083-43994102 | None:intergenic | 45.0% | |
| TCGACGACTGATAGAAGATC+AGG | + | chr5_4:43994658-43994677 | None:intergenic | 45.0% | |
| !! | TGAATGGATTGGAGAAGGAG+AGG | - | chr5_4:43994752-43994771 | Msa0852760:CDS | 45.0% |
| TCTCTCTGTAGTTGCCTAGT+AGG | + | chr5_4:43994868-43994887 | None:intergenic | 45.0% | |
| !! | TATATATATATATATATAGA+TGG | + | chr5_4:43991384-43991403 | None:intergenic | 5.0% |
| !!! | TTTATTTATGAAATTTTTAT+AGG | + | chr5_4:43991547-43991566 | None:intergenic | 5.0% |
| TCATGTGGACGACAGATTCG+GGG | - | chr5_4:43988872-43988891 | Msa0852760:CDS | 50.0% | |
| GATGACACCGAGAGCGAAAT+AGG | - | chr5_4:43989539-43989558 | Msa0852760:intron | 50.0% | |
| ATTGGGACGTGAGGATTCCA+TGG | + | chr5_4:43990923-43990942 | None:intergenic | 50.0% | |
| AGTACTTGGCTTCCTCACAC+TGG | - | chr5_4:43992468-43992487 | Msa0852760:intron | 50.0% | |
| GAATTGTCCAAGCCAGTGTG+AGG | + | chr5_4:43992483-43992502 | None:intergenic | 50.0% | |
| TGCAAGCAGTACAGGGGAAT+TGG | + | chr5_4:43992550-43992569 | None:intergenic | 50.0% | |
| ! | TCTGGCCTCTAGTTTGAAGC+TGG | + | chr5_4:43993398-43993417 | None:intergenic | 50.0% |
| AGGATAACTTGGCAAGGCAG+CGG | + | chr5_4:43993516-43993535 | None:intergenic | 50.0% | |
| !! | ATTGTTTTGCAGGTGGGGGT+GGG | + | chr5_4:43993720-43993739 | None:intergenic | 50.0% |
| !! | AATTGTTTTGCAGGTGGGGG+TGG | + | chr5_4:43993721-43993740 | None:intergenic | 50.0% |
| GGCGGAGGCGATTATTTACT+TGG | + | chr5_4:43993782-43993801 | None:intergenic | 50.0% | |
| ATGGAGATGCATCGAAGTGG+CGG | + | chr5_4:43993800-43993819 | None:intergenic | 50.0% | |
| CCAAGGATCCCTCCAAAACA+GGG | - | chr5_4:43993923-43993942 | Msa0852760:CDS | 50.0% | |
| ATCCCTCCAAAACAGGGTAG+AGG | - | chr5_4:43993929-43993948 | Msa0852760:CDS | 50.0% | |
| !! | GATCCTCTACCCTGTTTTGG+AGG | + | chr5_4:43993935-43993954 | None:intergenic | 50.0% |
| !! | GAGCTGGTTTGGTAGATGGA+GGG | + | chr5_4:43993995-43994014 | None:intergenic | 50.0% |
| GGAGAGGTAGGGGATAAGTT+TGG | + | chr5_4:43994046-43994065 | None:intergenic | 50.0% | |
| !!! | GGGAAGTTGTGTTTTGGGAG+AGG | + | chr5_4:43994062-43994081 | None:intergenic | 50.0% |
| GATGGGAGCTCGATATAGAG+AGG | + | chr5_4:43994090-43994109 | None:intergenic | 50.0% | |
| GTCGTCGACAACAGTGATAG+AGG | - | chr5_4:43994670-43994689 | Msa0852760:CDS | 50.0% | |
| CTACTGAGGATGGTGAAGGC+AGG | - | chr5_4:43989278-43989297 | Msa0852760:intron | 55.0% | |
| CAGCGTCCAACCTGAATCAG+AGG | + | chr5_4:43989360-43989379 | None:intergenic | 55.0% | |
| GATGCACGAGAAGTCGCTAC+AGG | + | chr5_4:43990976-43990995 | None:intergenic | 55.0% | |
| !! | TTTGCAGTGTCGGTCACACG+TGG | - | chr5_4:43992400-43992419 | Msa0852760:intron | 55.0% |
| ! | TTGGCTTCCTCACACTGGCT+TGG | - | chr5_4:43992473-43992492 | Msa0852760:intron | 55.0% |
| !! | TTGTTTTGCAGGTGGGGGTG+GGG | + | chr5_4:43993719-43993738 | None:intergenic | 55.0% |
| ! | TGGAGGGATCCTTGGCTTGA+TGG | + | chr5_4:43993918-43993937 | None:intergenic | 55.0% |
| GCCAAGGATCCCTCCAAAAC+AGG | - | chr5_4:43993922-43993941 | Msa0852760:CDS | 55.0% | |
| !!! | CCCTGTTTTGGAGGGATCCT+TGG | + | chr5_4:43993926-43993945 | None:intergenic | 55.0% |
| ! | GCGGATCCTCTACCCTGTTT+TGG | + | chr5_4:43993938-43993957 | None:intergenic | 55.0% |
| ATTGGTCGTGAGCTGAGTGG+CGG | + | chr5_4:43993957-43993976 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGTAGATGGAGGG+TGG | + | chr5_4:43993992-43994011 | None:intergenic | 55.0% |
| !! | GGAGCTGGTTTGGTAGATGG+AGG | + | chr5_4:43993996-43994015 | None:intergenic | 55.0% |
| !! | GAGGGAGCTGGTTTGGTAGA+TGG | + | chr5_4:43993999-43994018 | None:intergenic | 55.0% |
| GGGCGCGGGCAAGTATTATC+AGG | + | chr5_4:43990218-43990237 | None:intergenic | 60.0% | |
| ! | TGTTTTGCAGGTGGGGGTGG+GGG | + | chr5_4:43993718-43993737 | None:intergenic | 60.0% |
| GAGATGCATCGAAGTGGCGG+AGG | + | chr5_4:43993797-43993816 | None:intergenic | 60.0% | |
| GGGGTGGGGGTCGTTGGGTT+TGG | + | chr5_4:43993705-43993724 | None:intergenic | 70.0% | |
| AGGTGGGGGTGGGGGTCGTT+GGG | + | chr5_4:43993710-43993729 | None:intergenic | 70.0% | |
| CAGGTGGGGGTGGGGGTCGT+TGG | + | chr5_4:43993711-43993730 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 43988740 | 43994903 | 43988740 | ID=Msa0852760;Name=Msa0852760 |
| chr5_4 | mRNA | 43988740 | 43994903 | 43988740 | ID=Msa0852760-mRNA-1;Parent=Msa0852760;Name=Msa0852760-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.83|0.8|0.66|6|0|523 |
| chr5_4 | exon | 43994648 | 43994903 | 43994648 | ID=Msa0852760-mRNA-1:exon:13968;Parent=Msa0852760-mRNA-1 |
| chr5_4 | exon | 43993909 | 43994343 | 43993909 | ID=Msa0852760-mRNA-1:exon:13967;Parent=Msa0852760-mRNA-1 |
| chr5_4 | exon | 43993511 | 43993669 | 43993511 | ID=Msa0852760-mRNA-1:exon:13966;Parent=Msa0852760-mRNA-1 |
| chr5_4 | exon | 43991086 | 43991374 | 43991086 | ID=Msa0852760-mRNA-1:exon:13965;Parent=Msa0852760-mRNA-1 |
| chr5_4 | exon | 43990892 | 43990954 | 43990892 | ID=Msa0852760-mRNA-1:exon:13964;Parent=Msa0852760-mRNA-1 |
| chr5_4 | exon | 43988740 | 43989106 | 43988740 | ID=Msa0852760-mRNA-1:exon:13963;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43994648 | 43994903 | 43994648 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43993909 | 43994343 | 43993909 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43993511 | 43993669 | 43993511 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43991086 | 43991374 | 43991086 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43990892 | 43990954 | 43990892 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| chr5_4 | CDS | 43988740 | 43989106 | 43988740 | ID=Msa0852760-mRNA-1:cds;Parent=Msa0852760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
