Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887620 | XP_013452240.1 | 65.179 | 224 | 53 | 6 | 1 | 202 | 1 | 221 | 3.89e-83 | 264 |
| Msa0887620 | XP_013452240.1 | 66.816 | 223 | 66 | 2 | 204 | 419 | 1 | 222 | 4.20e-97 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887620 | sp|P08688|ALB2_PEA | 39.286 | 224 | 121 | 5 | 208 | 419 | 7 | 227 | 1.72e-39 | 144 |
| Msa0887620 | sp|P08688|ALB2_PEA | 37.838 | 222 | 112 | 6 | 5 | 202 | 7 | 226 | 2.43e-37 | 138 |
| Msa0887620 | sp|P08688|ALB2_PEA | 33.173 | 208 | 126 | 5 | 58 | 254 | 16 | 221 | 1.04e-23 | 102 |
| Msa0887620 | sp|P08688|ALB2_PEA | 32.000 | 200 | 109 | 10 | 151 | 334 | 5 | 193 | 2.56e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887620 | A0A072UB19 | 65.179 | 224 | 53 | 6 | 1 | 202 | 1 | 221 | 1.86e-83 | 264 |
| Msa0887620 | A0A072UB19 | 66.816 | 223 | 66 | 2 | 204 | 419 | 1 | 222 | 2.01e-97 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0132550 | Msa0887620 | 0.855920 | 4.564437e-62 | -8.615850e-47 |
| Msa0200460 | Msa0887620 | 0.861989 | 6.962258e-64 | -8.615850e-47 |
| Msa0410170 | Msa0887620 | 0.872530 | 2.963739e-67 | -8.615850e-47 |
| Msa0247020 | Msa0887620 | 0.809523 | 1.814507e-50 | -8.615850e-47 |
| Msa0500680 | Msa0887620 | 0.825055 | 5.774106e-54 | -8.615850e-47 |
| Msa0528130 | Msa0887620 | 0.823048 | 1.707873e-53 | -8.615850e-47 |
| Msa0852760 | Msa0887620 | 0.849212 | 3.738774e-60 | -8.615850e-47 |
| Msa0887620 | Msa1015930 | 0.834499 | 2.894022e-56 | -8.615850e-47 |
| Msa0887620 | Msa1223290 | 0.859427 | 4.168311e-63 | -8.615850e-47 |
| Msa0887620 | Msa1263840 | 0.822920 | 1.829656e-53 | -8.615850e-47 |
| Msa0887620 | Msa1263880 | 0.807256 | 5.523252e-50 | -8.615850e-47 |
| Msa0887620 | Msa1348270 | 0.808537 | 2.950699e-50 | -8.615850e-47 |
| Msa0887620 | Msa1367250 | 0.859860 | 3.086915e-63 | -8.615850e-47 |
| Msa0887620 | Msa1420460 | 0.869392 | 3.203970e-66 | -8.615850e-47 |
| Msa0887620 | Msa1430360 | 0.861501 | 9.812210e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887620 | MtrunA17_Chr6g0468931 | 66.816 | 223 | 66 | 2 | 204 | 419 | 1 | 222 | 3.87e-101 | 300 |
| Msa0887620 | MtrunA17_Chr6g0468931 | 65.179 | 224 | 53 | 6 | 1 | 202 | 1 | 221 | 3.58e-87 | 264 |
| Msa0887620 | MtrunA17_Chr6g0467741 | 60.987 | 223 | 77 | 3 | 204 | 419 | 1 | 220 | 1.94e-86 | 262 |
| Msa0887620 | MtrunA17_Chr6g0467741 | 58.824 | 221 | 70 | 4 | 1 | 202 | 1 | 219 | 4.58e-80 | 246 |
| Msa0887620 | MtrunA17_Chr6g0468881 | 58.150 | 227 | 68 | 5 | 1 | 202 | 1 | 225 | 2.32e-81 | 249 |
| Msa0887620 | MtrunA17_Chr6g0468881 | 59.211 | 228 | 79 | 5 | 204 | 419 | 1 | 226 | 9.38e-81 | 248 |
| Msa0887620 | MtrunA17_Chr6g0468921 | 61.932 | 176 | 58 | 3 | 252 | 419 | 4 | 178 | 1.16e-67 | 213 |
| Msa0887620 | MtrunA17_Chr6g0468921 | 55.000 | 160 | 60 | 5 | 53 | 202 | 20 | 177 | 8.61e-47 | 159 |
| Msa0887620 | MtrunA17_Chr6g0469021 | 44.444 | 225 | 110 | 7 | 204 | 419 | 1 | 219 | 1.68e-53 | 177 |
| Msa0887620 | MtrunA17_Chr6g0469021 | 44.196 | 224 | 97 | 9 | 1 | 202 | 1 | 218 | 8.38e-49 | 165 |
| Msa0887620 | MtrunA17_Chr6g0468901 | 65.000 | 140 | 39 | 3 | 71 | 202 | 195 | 332 | 4.59e-53 | 180 |
| Msa0887620 | MtrunA17_Chr6g0468901 | 61.268 | 142 | 51 | 3 | 279 | 419 | 195 | 333 | 2.76e-47 | 165 |
| Msa0887620 | MtrunA17_Chr6g0468901 | 60.417 | 96 | 31 | 1 | 204 | 292 | 1 | 96 | 5.47e-30 | 118 |
| Msa0887620 | MtrunA17_Chr6g0468901 | 59.375 | 96 | 27 | 1 | 1 | 84 | 1 | 96 | 4.16e-29 | 116 |
| Msa0887620 | MtrunA17_Chr1g0181421 | 44.344 | 221 | 108 | 5 | 208 | 419 | 6 | 220 | 1.41e-52 | 175 |
| Msa0887620 | MtrunA17_Chr1g0181421 | 41.667 | 216 | 106 | 4 | 5 | 202 | 6 | 219 | 7.09e-48 | 163 |
| Msa0887620 | MtrunA17_Chr6g0469031 | 44.444 | 225 | 109 | 7 | 204 | 419 | 1 | 218 | 4.10e-51 | 171 |
| Msa0887620 | MtrunA17_Chr6g0469031 | 44.843 | 223 | 96 | 7 | 1 | 202 | 1 | 217 | 1.01e-48 | 165 |
| Msa0887620 | MtrunA17_Chr6g0480031 | 43.478 | 230 | 110 | 5 | 206 | 419 | 4 | 229 | 1.45e-47 | 162 |
| Msa0887620 | MtrunA17_Chr6g0480031 | 41.126 | 231 | 105 | 7 | 3 | 205 | 4 | 231 | 2.51e-42 | 149 |
| Msa0887620 | MtrunA17_Chr6g0468991 | 43.182 | 220 | 108 | 7 | 208 | 419 | 6 | 216 | 3.30e-47 | 161 |
| Msa0887620 | MtrunA17_Chr6g0468991 | 41.284 | 218 | 100 | 6 | 5 | 202 | 6 | 215 | 2.47e-44 | 153 |
| Msa0887620 | MtrunA17_Chr6g0479661 | 45.771 | 201 | 94 | 4 | 206 | 395 | 4 | 200 | 1.53e-45 | 156 |
| Msa0887620 | MtrunA17_Chr6g0479661 | 42.857 | 196 | 85 | 5 | 3 | 174 | 4 | 196 | 2.20e-39 | 140 |
| Msa0887620 | MtrunA17_Chr8g0352561 | 37.826 | 230 | 123 | 6 | 204 | 419 | 277 | 500 | 6.96e-39 | 146 |
| Msa0887620 | MtrunA17_Chr8g0352561 | 36.638 | 232 | 118 | 6 | 1 | 207 | 277 | 504 | 3.46e-37 | 142 |
| Msa0887620 | MtrunA17_Chr6g0469081 | 37.054 | 224 | 125 | 6 | 208 | 419 | 7 | 226 | 1.43e-38 | 139 |
| Msa0887620 | MtrunA17_Chr6g0469081 | 36.364 | 220 | 117 | 4 | 5 | 202 | 7 | 225 | 1.28e-35 | 131 |
| Msa0887620 | MtrunA17_Chr6g0469081 | 32.353 | 204 | 124 | 5 | 59 | 251 | 17 | 217 | 6.93e-23 | 96.7 |
| Msa0887620 | MtrunA17_Chr6g0469111 | 36.607 | 224 | 126 | 6 | 208 | 419 | 7 | 226 | 4.79e-37 | 134 |
| Msa0887620 | MtrunA17_Chr6g0469111 | 35.909 | 220 | 118 | 4 | 5 | 202 | 7 | 225 | 5.02e-35 | 129 |
| Msa0887620 | MtrunA17_Chr6g0469111 | 32.353 | 204 | 124 | 6 | 59 | 251 | 17 | 217 | 3.29e-22 | 94.7 |
| Msa0887620 | MtrunA17_Chr7g0265911 | 38.667 | 225 | 121 | 7 | 208 | 419 | 7 | 227 | 7.70e-37 | 134 |
| Msa0887620 | MtrunA17_Chr7g0265911 | 37.838 | 222 | 112 | 7 | 5 | 202 | 7 | 226 | 4.04e-34 | 127 |
| Msa0887620 | MtrunA17_Chr6g0466651 | 36.444 | 225 | 113 | 6 | 5 | 202 | 7 | 228 | 2.39e-34 | 127 |
| Msa0887620 | MtrunA17_Chr6g0466651 | 36.564 | 227 | 125 | 8 | 208 | 419 | 7 | 229 | 3.22e-33 | 124 |
| Msa0887620 | MtrunA17_Chr6g0466651 | 32.673 | 202 | 120 | 7 | 58 | 246 | 16 | 214 | 1.04e-21 | 93.2 |
| Msa0887620 | MtrunA17_Chr7g0218191 | 41.322 | 121 | 57 | 2 | 5 | 112 | 7 | 126 | 2.29e-22 | 92.0 |
| Msa0887620 | MtrunA17_Chr7g0218191 | 40.496 | 121 | 63 | 2 | 208 | 320 | 7 | 126 | 1.41e-21 | 90.1 |
| Msa0887620 | MtrunA17_Chr6g0469061 | 43.220 | 118 | 62 | 4 | 302 | 419 | 1 | 113 | 1.51e-19 | 83.6 |
| Msa0887620 | MtrunA17_Chr6g0469061 | 43.103 | 116 | 55 | 3 | 94 | 202 | 1 | 112 | 1.91e-19 | 83.6 |
| Msa0887620 | MtrunA17_Chr6g0469051 | 42.017 | 119 | 62 | 4 | 302 | 419 | 1 | 113 | 7.42e-18 | 79.0 |
| Msa0887620 | MtrunA17_Chr6g0469051 | 41.379 | 116 | 57 | 3 | 94 | 202 | 1 | 112 | 8.92e-17 | 75.9 |
| Msa0887620 | MtrunA17_Chr4g0057111 | 48.193 | 83 | 39 | 3 | 302 | 383 | 1 | 80 | 1.09e-14 | 70.5 |
| Msa0887620 | MtrunA17_Chr4g0057111 | 32.000 | 125 | 59 | 2 | 94 | 211 | 1 | 106 | 2.45e-11 | 60.8 |
| Msa0887620 | MtrunA17_Chr4g0057111 | 41.975 | 81 | 45 | 1 | 141 | 221 | 2 | 80 | 3.62e-11 | 60.5 |
| Msa0887620 | MtrunA17_Chr4g0057121 | 53.061 | 49 | 23 | 0 | 2 | 50 | 4 | 52 | 6.96e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATAAGTAAACATATTC+TGG | 0.154519 | 6_1:+49768360 | None:intergenic |
| AATGCAACATCTATGTTATT+TGG | 0.176878 | 6_1:+49764369 | None:intergenic |
| CACAATTTCCAACCATTTCT+TGG | 0.206692 | 6_1:-49763916 | Msa0887620:CDS |
| AAAGCAGCATCTATGTTATT+TGG | 0.223292 | 6_1:+49768741 | None:intergenic |
| GAAGTATGCCACATTGTTTC+CGG | 0.252705 | 6_1:+49768542 | None:intergenic |
| GAAGTATGCCACATTGTTTC+CGG | 0.254674 | 6_1:+49764191 | None:intergenic |
| CATAAAGAAAGATATAATTA+AGG | 0.290026 | 6_1:-49764271 | Msa0887620:CDS |
| CAACAAGAAAGATATAATTA+AGG | 0.302397 | 6_1:-49768643 | Msa0887620:CDS |
| GAGCATTTCCCACAATTTCT+TGG | 0.315385 | 6_1:-49768270 | Msa0887620:CDS |
| TTGAATAAGTAAACAAGTAT+TGG | 0.337335 | 6_1:+49764009 | None:intergenic |
| CATCAGTTATTAGCTTAATC+AGG | 0.358079 | 6_1:+49768124 | None:intergenic |
| AATATGACCTTCAAGTAATC+TGG | 0.360527 | 6_1:+49764113 | None:intergenic |
| AATAGGACCTTCAAGTAATC+TGG | 0.365840 | 6_1:+49768464 | None:intergenic |
| ATCTATTCCACTTTCAAATA+CGG | 0.371814 | 6_1:+49768407 | None:intergenic |
| AATGTGGCATACTTCTTTGC+GGG | 0.377932 | 6_1:-49764183 | Msa0887620:CDS |
| AATGTGGCATACTTCTTTGC+CGG | 0.384263 | 6_1:-49768534 | Msa0887620:CDS |
| GTAAACAAGTATTGGATTAG+TGG | 0.404860 | 6_1:+49764017 | None:intergenic |
| TTTCTTGGAACTGTCTTTGA+AGG | 0.419005 | 6_1:-49768255 | Msa0887620:CDS |
| TATAATATGCTTTGAAGAGC+GGG | 0.432935 | 6_1:+49763745 | None:intergenic |
| AACAAGAAAGATATAATTAA+GGG | 0.440150 | 6_1:-49768642 | Msa0887620:CDS |
| ATAAAGAAAGATATAATTAA+GGG | 0.446234 | 6_1:-49764270 | Msa0887620:CDS |
| TATAACATGCTTTGAAGAGC+AGG | 0.446245 | 6_1:+49768096 | None:intergenic |
| GAAAGATATAATTAAGGGTC+CGG | 0.446779 | 6_1:-49764265 | Msa0887620:CDS |
| GAAAGATATAATTAAGGGTC+CGG | 0.446779 | 6_1:-49768637 | Msa0887620:CDS |
| GTAAACATATTCTGGATTAG+TGG | 0.463745 | 6_1:+49768368 | None:intergenic |
| ATATCTTTCTTTATGCTGCC+AGG | 0.464232 | 6_1:+49764279 | None:intergenic |
| TAAACATATTCTGGATTAGT+GGG | 0.464406 | 6_1:+49768369 | None:intergenic |
| TACAGCTTAAATTATCCAAA+CGG | 0.471817 | 6_1:-49768159 | Msa0887620:CDS |
| CACATTGTTTCCGGCGTCAA+AGG | 0.472857 | 6_1:+49768551 | None:intergenic |
| TTAAGCTAATAACTGATGAT+TGG | 0.473155 | 6_1:-49768119 | Msa0887620:CDS |
| ATATCTTTCTTGTTGCCTCC+AGG | 0.476078 | 6_1:+49768651 | None:intergenic |
| TAAAATGTTTCCTTGTCTCA+AGG | 0.479111 | 6_1:-49768433 | Msa0887620:CDS |
| AAGACAGTTCCAAGAAATTG+TGG | 0.481053 | 6_1:+49768261 | None:intergenic |
| TAAACAAGTATTGGATTAGT+GGG | 0.484463 | 6_1:+49764018 | None:intergenic |
| GTTTCCGGTGTCAAAGGAAA+GGG | 0.496428 | 6_1:+49764206 | None:intergenic |
| CACATTGTTTCCGGTGTCAA+AGG | 0.496818 | 6_1:+49764200 | None:intergenic |
| AAAATGTTTCCTTGTCTCAA+GGG | 0.498807 | 6_1:-49768432 | Msa0887620:CDS |
| TCAAGTAATCTGGCTTTCGC+TGG | 0.506575 | 6_1:+49768474 | None:intergenic |
| CAATGTGGCATACTTCTTTG+CGG | 0.511238 | 6_1:-49764184 | Msa0887620:CDS |
| ATACTTGTTTACTTATTCAA+AGG | 0.514359 | 6_1:-49764006 | Msa0887620:CDS |
| CTTGGAACTGTCTTTGAAGG+TGG | 0.522576 | 6_1:-49768252 | Msa0887620:CDS |
| GGTCCGGAAAATATTACTGA+TGG | 0.523571 | 6_1:-49764249 | Msa0887620:CDS |
| TGTTTCCGGTGTCAAAGGAA+AGG | 0.524222 | 6_1:+49764205 | None:intergenic |
| GCGAAAGCCAGATTACTTGA+AGG | 0.527753 | 6_1:-49768471 | Msa0887620:CDS |
| AAAATGTTTCCTTGTCTCGA+GGG | 0.528718 | 6_1:-49764081 | Msa0887620:CDS |
| GGTCCGGAAAATATTGCTGA+TGG | 0.540564 | 6_1:-49768621 | Msa0887620:CDS |
| AGAACCCTTTCCTTTGACAC+CGG | 0.545192 | 6_1:-49764210 | Msa0887620:CDS |
| ACGGAATAGACGCTATAATG+AGG | 0.547522 | 6_1:-49764044 | Msa0887620:CDS |
| CTGGCTTTCGCTGGTGAGTG+TGG | 0.548785 | 6_1:+49768483 | None:intergenic |
| AGACAGTTCCAAGAAATTGT+GGG | 0.549215 | 6_1:+49768262 | None:intergenic |
| GAGGGAACCGTATTTGAAAA+CGG | 0.560002 | 6_1:-49764063 | Msa0887620:CDS |
| AAGGGAACCGTATTTGAAAG+TGG | 0.560984 | 6_1:-49768414 | Msa0887620:CDS |
| GCAAAAGCCAGATTACTTGA+AGG | 0.561169 | 6_1:-49764120 | Msa0887620:CDS |
| GTCCGGAAAATATTACTGAT+GGG | 0.565011 | 6_1:-49764248 | Msa0887620:CDS |
| TAAAATGTTTCCTTGTCTCG+AGG | 0.565908 | 6_1:-49764082 | Msa0887620:CDS |
| AAACAGTACCAAGAAATGGT+TGG | 0.568688 | 6_1:+49763908 | None:intergenic |
| GTGGTTGTGAATTATGCTCC+TGG | 0.571035 | 6_1:-49768669 | Msa0887620:CDS |
| ATTGATAGTTCCTTTGACGC+CGG | 0.571768 | 6_1:-49768561 | Msa0887620:intron |
| ATTCATTAGTTACAGATGAA+CGG | 0.574273 | 6_1:+49768718 | None:intergenic |
| GTGGTTGTGAATTATGCTCC+TGG | 0.575879 | 6_1:-49764297 | Msa0887620:CDS |
| GAAAGGGTTCTAGCAAACAT+AGG | 0.581519 | 6_1:+49764222 | None:intergenic |
| GTCCGGAAAATATTGCTGAT+GGG | 0.585093 | 6_1:-49768620 | Msa0887620:CDS |
| CGGAATAGACGCTATAATGA+GGG | 0.589058 | 6_1:-49764043 | Msa0887620:CDS |
| AATACGGTTCCCTTGAGACA+AGG | 0.599945 | 6_1:+49768423 | None:intergenic |
| TTATAATATGCTTTGAAGAG+CGG | 0.605333 | 6_1:+49763744 | None:intergenic |
| TAAAGCTAATTAGTAATGAG+TGG | 0.605554 | 6_1:-49763768 | Msa0887620:CDS |
| CTTTGACACCGGAAACAATG+TGG | 0.609965 | 6_1:-49764199 | Msa0887620:CDS |
| TGAGCACCCTCCACACTCAC+CGG | 0.611804 | 6_1:-49764142 | Msa0887620:CDS |
| AATACGGTTCCCTCGAGACA+AGG | 0.613267 | 6_1:+49764072 | None:intergenic |
| CAAACAAACGAAATATATGA+CGG | 0.619384 | 6_1:-49768309 | Msa0887620:CDS |
| CTTTGACGCCGGAAACAATG+TGG | 0.652347 | 6_1:-49768550 | Msa0887620:CDS |
| GTTTGCGAAAGATAAGTATG+TGG | 0.667713 | 6_1:-49764316 | Msa0887620:CDS |
| AAACATATTCTGGATTAGTG+GGG | 0.692736 | 6_1:+49768370 | None:intergenic |
| GTGGAATAGATGCTACAATG+AGG | 0.701731 | 6_1:-49768395 | Msa0887620:CDS |
| AAACAAGTATTGGATTAGTG+GGG | 0.705135 | 6_1:+49764019 | None:intergenic |
| GTTGTGAATTATGCTCCTGG+AGG | 0.778614 | 6_1:-49768666 | Msa0887620:CDS |
| GTTTGTGAAAGATAAGTACG+TGG | 0.815336 | 6_1:-49768688 | Msa0887620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATATATGTAATATATAT+TGG | - | chr6_1:49764682-49764701 | Msa0887620:intron | 10.0% |
| !! | AGATTTATTACATTTAAAAA+AGG | + | chr6_1:49764750-49764769 | None:intergenic | 10.0% |
| !! | TTATTTGAATAAAATACATA+AGG | - | chr6_1:49766325-49766344 | Msa0887620:intron | 10.0% |
| !!! | TTCTTTATTTTATTTTTCTA+AGG | + | chr6_1:49768080-49768099 | None:intergenic | 10.0% |
| !! | ATAAAGAAAGATATAATTAA+GGG | - | chr6_1:49768218-49768237 | Msa0887620:CDS | 10.0% |
| !! | AACAAGAAAGATATAATTAA+GGG | - | chr6_1:49763846-49763865 | Msa0887620:CDS | 15.0% |
| !! | TTAAATAAGTAAACATATTC+TGG | + | chr6_1:49764131-49764150 | None:intergenic | 15.0% |
| !! | GAATATGTTTACTTATTTAA+AGG | - | chr6_1:49764131-49764150 | Msa0887620:CDS | 15.0% |
| !! | TAAATCTAATTAGTAAACAT+AGG | - | chr6_1:49764763-49764782 | Msa0887620:intron | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | - | chr6_1:49764917-49764936 | Msa0887620:intron | 15.0% |
| !! | GAATTTCATTGATAAAAAAA+GGG | + | chr6_1:49765044-49765063 | None:intergenic | 15.0% |
| !! | TGAATTTCATTGATAAAAAA+AGG | + | chr6_1:49765045-49765064 | None:intergenic | 15.0% |
| !! | AAATTTCTTACAAATAAACT+TGG | + | chr6_1:49765182-49765201 | None:intergenic | 15.0% |
| !!! | AAGAAATTTTTAAACATGTA+AGG | - | chr6_1:49765193-49765212 | Msa0887620:intron | 15.0% |
| !! | ATTAGAATATATGTAACAAA+GGG | - | chr6_1:49765827-49765846 | Msa0887620:intron | 15.0% |
| !!! | TTTAAGATTATATGTAACAA+AGG | - | chr6_1:49765915-49765934 | Msa0887620:intron | 15.0% |
| !! | TTAAGATTATATGTAACAAA+GGG | - | chr6_1:49765916-49765935 | Msa0887620:intron | 15.0% |
| !! | ATTATTTGATCAAAATAGTT+AGG | - | chr6_1:49766088-49766107 | Msa0887620:intron | 15.0% |
| !! | GAAATATTCTTTCAAAAAAT+TGG | - | chr6_1:49767272-49767291 | Msa0887620:intron | 15.0% |
| !! | AAAAATTGATATGAAACATT+AGG | + | chr6_1:49767438-49767457 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGTTCACATTAT+TGG | - | chr6_1:49767987-49768006 | Msa0887620:intron | 15.0% |
| !!! | ATTTTATTTTTCTAAGGTAA+TGG | + | chr6_1:49768074-49768093 | None:intergenic | 15.0% |
| !! | CATAAAGAAAGATATAATTA+AGG | - | chr6_1:49768217-49768236 | Msa0887620:CDS | 15.0% |
| !! | CAACAAGAAAGATATAATTA+AGG | - | chr6_1:49763845-49763864 | Msa0887620:CDS | 20.0% |
| !!! | AACATTTTAATGATTGGAAT+AGG | + | chr6_1:49764044-49764063 | None:intergenic | 20.0% |
| !!! | AGAGAAGTTTACATTTTTAA+AGG | - | chr6_1:49764290-49764309 | Msa0887620:CDS | 20.0% |
| !! | CATATATAGTAAACAAACAA+AGG | + | chr6_1:49764672-49764691 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | - | chr6_1:49764920-49764939 | Msa0887620:intron | 20.0% |
| !!! | ACTAGTATGTTTTTATTTGT+TGG | - | chr6_1:49765218-49765237 | Msa0887620:intron | 20.0% |
| !! | TAAATTTAGCATCAAAGATA+CGG | + | chr6_1:49765482-49765501 | None:intergenic | 20.0% |
| !! | GATTAGAATATATGTAACAA+AGG | - | chr6_1:49765826-49765845 | Msa0887620:intron | 20.0% |
| !! | TTAGAATATATGTAACAAAG+GGG | - | chr6_1:49765828-49765847 | Msa0887620:intron | 20.0% |
| !! | ACATATAATCTTAAATGACA+TGG | + | chr6_1:49765910-49765929 | None:intergenic | 20.0% |
| !! | TAAGATTATATGTAACAAAG+GGG | - | chr6_1:49765917-49765936 | Msa0887620:intron | 20.0% |
| !! | CAAATACTAACCATAAATTT+GGG | + | chr6_1:49766246-49766265 | None:intergenic | 20.0% |
| !! | TCAAATACTAACCATAAATT+TGG | + | chr6_1:49766247-49766266 | None:intergenic | 20.0% |
| !!! | AAACATATGAAAAGTATAAC+TGG | - | chr6_1:49766485-49766504 | Msa0887620:intron | 20.0% |
| !!! | AAATAGTAACTTTTGCTATT+GGG | + | chr6_1:49767233-49767252 | None:intergenic | 20.0% |
| !!! | TAAATAGTAACTTTTGCTAT+TGG | + | chr6_1:49767234-49767253 | None:intergenic | 20.0% |
| !! | TAGCAAAAGTTACTATTTAA+AGG | - | chr6_1:49767235-49767254 | Msa0887620:intron | 20.0% |
| !!! | TTAAAGTGTTTAGTTAATCA+TGG | + | chr6_1:49767381-49767400 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATTTTTTTGAGC+TGG | - | chr6_1:49767407-49767426 | Msa0887620:intron | 20.0% |
| !! | TTAAATTGCATAAAACTTGA+AGG | + | chr6_1:49767496-49767515 | None:intergenic | 20.0% |
| !! | GGATTAACTTATAATCATAT+TGG | - | chr6_1:49767628-49767647 | Msa0887620:intron | 20.0% |
| !! | TTCTATATTAAATTTGCAAC+CGG | + | chr6_1:49767752-49767771 | None:intergenic | 20.0% |
| !! | TAGAATAGATAAATCTCATA+TGG | - | chr6_1:49767767-49767786 | Msa0887620:intron | 20.0% |
| !! | AGAATAGATAAATCTCATAT+GGG | - | chr6_1:49767768-49767787 | Msa0887620:intron | 20.0% |
| !!! | TTATTTGGCATTTTTCTTAT+TGG | + | chr6_1:49768107-49768126 | None:intergenic | 20.0% |
| !! | TTGAATAAGTAAACAAGTAT+TGG | + | chr6_1:49768482-49768501 | None:intergenic | 20.0% |
| !! | ATACTTGTTTACTTATTCAA+AGG | - | chr6_1:49768482-49768501 | Msa0887620:CDS | 20.0% |
| ! | ATTCATTAGTTACAGATGAA+CGG | + | chr6_1:49763773-49763792 | None:intergenic | 25.0% |
| !!! | CAAGGAAACATTTTAATGAT+TGG | + | chr6_1:49764050-49764069 | None:intergenic | 25.0% |
| ! | ATCTATTCCACTTTCAAATA+CGG | + | chr6_1:49764084-49764103 | None:intergenic | 25.0% |
| !!! | TAAACATATTCTGGATTAGT+GGG | + | chr6_1:49764122-49764141 | None:intergenic | 25.0% |
| ! | CAAACAAACGAAATATATGA+CGG | - | chr6_1:49764179-49764198 | Msa0887620:CDS | 25.0% |
| ! | TACAGCTTAAATTATCCAAA+CGG | - | chr6_1:49764329-49764348 | Msa0887620:CDS | 25.0% |
| ! | TTAAGCTAATAACTGATGAT+TGG | - | chr6_1:49764369-49764388 | Msa0887620:CDS | 25.0% |
| ! | TCTAATTAGTAAACATAGGA+TGG | - | chr6_1:49764767-49764786 | Msa0887620:intron | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | + | chr6_1:49764922-49764941 | None:intergenic | 25.0% |
| ! | CTAAATAAGAAAACCCATTA+AGG | - | chr6_1:49765120-49765139 | Msa0887620:intron | 25.0% |
| ! | TGGAGAAGGTTTATTATTTA+GGG | + | chr6_1:49765162-49765181 | None:intergenic | 25.0% |
| ! | TTGGAGAAGGTTTATTATTT+AGG | + | chr6_1:49765163-49765182 | None:intergenic | 25.0% |
| ! | TAGATTTACCAAAACTATTC+TGG | + | chr6_1:49765394-49765413 | None:intergenic | 25.0% |
| !!! | GAATAGTTTTGGTAAATCTA+AGG | - | chr6_1:49765394-49765413 | Msa0887620:intron | 25.0% |
| ! | AAATTTAGCATCAAAGATAC+GGG | + | chr6_1:49765481-49765500 | None:intergenic | 25.0% |
| !! | TATGTAGATGATTTTGTCTT+GGG | + | chr6_1:49765554-49765573 | None:intergenic | 25.0% |
| ! | TTCAAACAAAGAAATTCATG+TGG | + | chr6_1:49765788-49765807 | None:intergenic | 25.0% |
| ! | TAGAATATATGTAACAAAGG+GGG | - | chr6_1:49765829-49765848 | Msa0887620:intron | 25.0% |
| ! | AAGATTATATGTAACAAAGG+GGG | - | chr6_1:49765918-49765937 | Msa0887620:intron | 25.0% |
| ! | AGAATCTCAAATTACATAGT+CGG | + | chr6_1:49766000-49766019 | None:intergenic | 25.0% |
| ! | ATTGTTATGGTGAGAAAAAA+TGG | + | chr6_1:49766877-49766896 | None:intergenic | 25.0% |
| ! | TTTATCACAAATGATGTTTC+GGG | + | chr6_1:49766913-49766932 | None:intergenic | 25.0% |
| ! | GTTTATCACAAATGATGTTT+CGG | + | chr6_1:49766914-49766933 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTTAGGTTAG+AGG | - | chr6_1:49767182-49767201 | Msa0887620:intron | 25.0% |
| ! | ACTAACATCTATATAAACAG+AGG | - | chr6_1:49768016-49768035 | Msa0887620:intron | 25.0% |
| ! | GATATGAAATGTTATGCTTT+AGG | + | chr6_1:49768052-49768071 | None:intergenic | 25.0% |
| ! | AATGCAACATCTATGTTATT+TGG | + | chr6_1:49768122-49768141 | None:intergenic | 25.0% |
| !!! | CAAGGAAACATTTTAATGAT+TGG | + | chr6_1:49764050-49764069 | None:intergenic | 25.0% |
| !!! | TAAACAAGTATTGGATTAGT+GGG | + | chr6_1:49768473-49768492 | None:intergenic | 25.0% |
| !!! | ATACACTTTTGAGATATCAT+TGG | + | chr6_1:49768537-49768556 | None:intergenic | 25.0% |
| !! | GATGAAGTTTACATTTTCAA+AGG | - | chr6_1:49768644-49768663 | Msa0887620:CDS | 25.0% |
| !! | ATTACAACATTTTTCTTCGT+CGG | - | chr6_1:49768681-49768700 | Msa0887620:CDS | 25.0% |
| ! | TAAAGCTAATTAGTAATGAG+TGG | - | chr6_1:49768720-49768739 | Msa0887620:CDS | 25.0% |
| !!! | TTATAATATGCTTTGAAGAG+CGG | + | chr6_1:49768747-49768766 | None:intergenic | 25.0% |
| AAAGCAGCATCTATGTTATT+TGG | + | chr6_1:49763750-49763769 | None:intergenic | 30.0% | |
| GAAAGATATAATTAAGGGTC+CGG | - | chr6_1:49763851-49763870 | Msa0887620:CDS | 30.0% | |
| ! | AATAGAGTTCTAGCAAACAT+TGG | + | chr6_1:49763897-49763916 | None:intergenic | 30.0% |
| TAAAATGTTTCCTTGTCTCA+AGG | - | chr6_1:49764055-49764074 | Msa0887620:CDS | 30.0% | |
| AAAATGTTTCCTTGTCTCAA+GGG | - | chr6_1:49764056-49764075 | Msa0887620:CDS | 30.0% | |
| !! | AAACATATTCTGGATTAGTG+GGG | + | chr6_1:49764121-49764140 | None:intergenic | 30.0% |
| ! | GTAAACATATTCTGGATTAG+TGG | + | chr6_1:49764123-49764142 | None:intergenic | 30.0% |
| !! | TATCCAAACGGCTTTAAAAA+TGG | - | chr6_1:49764341-49764360 | Msa0887620:CDS | 30.0% |
| ! | CATCAGTTATTAGCTTAATC+AGG | + | chr6_1:49764367-49764386 | None:intergenic | 30.0% |
| ! | AAGATCATTGCATTGTTGTT+TGG | - | chr6_1:49764722-49764741 | Msa0887620:intron | 30.0% |
| GAAGTAATGGTGTGTAATTA+AGG | - | chr6_1:49764952-49764971 | Msa0887620:intron | 30.0% | |
| AATGGTGTGTAATTAAGGAA+AGG | - | chr6_1:49764957-49764976 | Msa0887620:intron | 30.0% | |
| TACAGGGACAAAATTTATCA+AGG | + | chr6_1:49765011-49765030 | None:intergenic | 30.0% | |
| AAAGGGAAATGATAGATACA+GGG | + | chr6_1:49765027-49765046 | None:intergenic | 30.0% | |
| AAAAGGGAAATGATAGATAC+AGG | + | chr6_1:49765028-49765047 | None:intergenic | 30.0% | |
| !! | GGGTTTTCTTATTTAGATTG+AGG | + | chr6_1:49765116-49765135 | None:intergenic | 30.0% |
| TATCTTCACTAAGCCTTAAT+GGG | + | chr6_1:49765136-49765155 | None:intergenic | 30.0% | |
| TTATCTTCACTAAGCCTTAA+TGG | + | chr6_1:49765137-49765156 | None:intergenic | 30.0% | |
| CTTACAAATAAACTTGGAGA+AGG | + | chr6_1:49765176-49765195 | None:intergenic | 30.0% | |
| CTGAAATTTCTTATGCACTA+AGG | + | chr6_1:49765300-49765319 | None:intergenic | 30.0% | |
| CTTAGTGCATAAGAAATTTC+AGG | - | chr6_1:49765298-49765317 | Msa0887620:intron | 30.0% | |
| ! | ACAATTCACCAGAATAGTTT+TGG | - | chr6_1:49765383-49765402 | Msa0887620:intron | 30.0% |
| GGAACTGTCAAATATTTGTT+AGG | + | chr6_1:49765460-49765479 | None:intergenic | 30.0% | |
| ! | ATGTAGATGATTTTGTCTTG+GGG | + | chr6_1:49765553-49765572 | None:intergenic | 30.0% |
| ! | CTATGTAGATGATTTTGTCT+TGG | + | chr6_1:49765555-49765574 | None:intergenic | 30.0% |
| CAATCAAATCTAATTGCCAA+GGG | + | chr6_1:49765858-49765877 | None:intergenic | 30.0% | |
| GACTGAAGAGATAGATTAAA+AGG | - | chr6_1:49765881-49765900 | Msa0887620:intron | 30.0% | |
| AGATTATATGTAACAAAGGG+GGG | - | chr6_1:49765919-49765938 | Msa0887620:intron | 30.0% | |
| AAAACCAATCTAATTGCCAA+GGG | + | chr6_1:49765948-49765967 | None:intergenic | 30.0% | |
| ATTCTCTTCTCTAAGTTGTT+TGG | - | chr6_1:49766015-49766034 | Msa0887620:intron | 30.0% | |
| TTCTCTTCTCTAAGTTGTTT+GGG | - | chr6_1:49766016-49766035 | Msa0887620:intron | 30.0% | |
| CTTAAACCTTCAATAGCTAA+GGG | + | chr6_1:49766145-49766164 | None:intergenic | 30.0% | |
| TCTTAAACCTTCAATAGCTA+AGG | + | chr6_1:49766146-49766165 | None:intergenic | 30.0% | |
| TAGATTGAGACCCAAATTTA+TGG | - | chr6_1:49766233-49766252 | Msa0887620:intron | 30.0% | |
| GAAGGTTCATAAATTGACAT+AGG | + | chr6_1:49766275-49766294 | None:intergenic | 30.0% | |
| ATGATTCCTTTACACTCAAA+TGG | - | chr6_1:49766511-49766530 | Msa0887620:intron | 30.0% | |
| ATGCGTTTCCCTAAATATTA+GGG | - | chr6_1:49766630-49766649 | Msa0887620:intron | 30.0% | |
| TCAACTCTCCCTAATATTTA+GGG | + | chr6_1:49766641-49766660 | None:intergenic | 30.0% | |
| TGGTGAGAAAAAATGGATAA+AGG | + | chr6_1:49766870-49766889 | None:intergenic | 30.0% | |
| CATAGTCGTTACAATTGTTA+TGG | + | chr6_1:49766890-49766909 | None:intergenic | 30.0% | |
| ! | TACAAATAGTTGCTTGGTTT+TGG | - | chr6_1:49766953-49766972 | Msa0887620:intron | 30.0% |
| ! | GGAAAATAGCATTGAAATCA+TGG | + | chr6_1:49766986-49767005 | None:intergenic | 30.0% |
| ATACGTTCAATAGTCATGAA+GGG | + | chr6_1:49767017-49767036 | None:intergenic | 30.0% | |
| AAGAAGAAAAAACAGCGAAA+AGG | + | chr6_1:49767174-49767193 | None:intergenic | 30.0% | |
| !!! | TTCGCTGTTTTTTCTTCTTT+AGG | - | chr6_1:49767175-49767194 | Msa0887620:intron | 30.0% |
| TTGGGTTTGTATTTGGTTAT+TGG | + | chr6_1:49767215-49767234 | None:intergenic | 30.0% | |
| !! | TTTGCTATTGGGTTTGTATT+TGG | + | chr6_1:49767222-49767241 | None:intergenic | 30.0% |
| TTCAAAAAATTGGCAGTTCA+AGG | - | chr6_1:49767282-49767301 | Msa0887620:intron | 30.0% | |
| TGAGATTAAGGCAAATTGTA+TGG | + | chr6_1:49767469-49767488 | None:intergenic | 30.0% | |
| !!! | AGAAGACTTGGTTTTTTAAG+AGG | - | chr6_1:49767551-49767570 | Msa0887620:intron | 30.0% |
| TTACCATATATTGAGCAAGT+TGG | - | chr6_1:49767607-49767626 | Msa0887620:intron | 30.0% | |
| ! | AATCCAACTTGCTCAATATA+TGG | + | chr6_1:49767613-49767632 | None:intergenic | 30.0% |
| TCATCCATCTAATGATAAAC+CGG | - | chr6_1:49767730-49767749 | Msa0887620:intron | 30.0% | |
| TCTAAAAAATCCTAGTAGCA+AGG | - | chr6_1:49767864-49767883 | Msa0887620:intron | 30.0% | |
| AACTCTTCAATACGTATACA+TGG | + | chr6_1:49767910-49767929 | None:intergenic | 30.0% | |
| ACGTATTGAAGAGTTTACTT+TGG | - | chr6_1:49767915-49767934 | Msa0887620:intron | 30.0% | |
| ATGTGAATACAAAACACGTT+AGG | + | chr6_1:49767944-49767963 | None:intergenic | 30.0% | |
| ! | TTTGGCATTTTTCTTATTGG+AGG | + | chr6_1:49768104-49768123 | None:intergenic | 30.0% |
| AATATGACCTTCAAGTAATC+TGG | + | chr6_1:49768378-49768397 | None:intergenic | 30.0% | |
| ! | GTCTATTCCGTTTTCAAATA+CGG | + | chr6_1:49768435-49768454 | None:intergenic | 30.0% |
| !! | AAACAAGTATTGGATTAGTG+GGG | + | chr6_1:49768472-49768491 | None:intergenic | 30.0% |
| !! | GTAAACAAGTATTGGATTAG+TGG | + | chr6_1:49768474-49768493 | None:intergenic | 30.0% |
| TCAAAAACAGTACCAAGAAA+TGG | + | chr6_1:49768587-49768606 | None:intergenic | 30.0% | |
| !!! | TTTCTTGGTACTGTTTTTGA+AGG | - | chr6_1:49768587-49768606 | Msa0887620:intron | 30.0% |
| !!! | TTCTTGGTACTGTTTTTGAA+GGG | - | chr6_1:49768588-49768607 | Msa0887620:intron | 30.0% |
| !!! | TTTCTTCGTCGGTTTTTAAA+TGG | - | chr6_1:49768692-49768711 | Msa0887620:CDS | 30.0% |
| !! | TATAATATGCTTTGAAGAGC+GGG | + | chr6_1:49768746-49768765 | None:intergenic | 30.0% |
| GTTTGTGAAAGATAAGTACG+TGG | - | chr6_1:49763800-49763819 | Msa0887620:CDS | 35.0% | |
| ! | AACCCATCAGCAATATTTTC+CGG | + | chr6_1:49763873-49763892 | None:intergenic | 35.0% |
| ! | AGTTTTTGCACATTGATCTC+CGG | + | chr6_1:49763976-49763995 | None:intergenic | 35.0% |
| AATAGGACCTTCAAGTAATC+TGG | + | chr6_1:49764027-49764046 | None:intergenic | 35.0% | |
| AGACAGTTCCAAGAAATTGT+GGG | + | chr6_1:49764229-49764248 | None:intergenic | 35.0% | |
| AAGACAGTTCCAAGAAATTG+TGG | + | chr6_1:49764230-49764249 | None:intergenic | 35.0% | |
| TTTCTTGGAACTGTCTTTGA+AGG | - | chr6_1:49764233-49764252 | Msa0887620:CDS | 35.0% | |
| !! | TATAACATGCTTTGAAGAGC+AGG | + | chr6_1:49764395-49764414 | None:intergenic | 35.0% |
| TTTGGTTGTTGTCCAATTCT+GGG | - | chr6_1:49764460-49764479 | Msa0887620:intron | 35.0% | |
| ! | TCTCTTGCTCAATTTGGTTT+GGG | - | chr6_1:49764499-49764518 | Msa0887620:intron | 35.0% |
| !!! | TTCCTCGTGCTTTATTTTTC+TGG | - | chr6_1:49764540-49764559 | Msa0887620:intron | 35.0% |
| AACCAGAAAAATAAAGCACG+AGG | + | chr6_1:49764545-49764564 | None:intergenic | 35.0% | |
| GGATGGAATGAAAAGATGAA+AGG | - | chr6_1:49764784-49764803 | Msa0887620:intron | 35.0% | |
| AATACAACGATTACACACAC+TGG | + | chr6_1:49764812-49764831 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | - | chr6_1:49764929-49764948 | Msa0887620:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | - | chr6_1:49764930-49764949 | Msa0887620:intron | 35.0% |
| !! | TGTTGTAGACTTGCTATTTC+AGG | - | chr6_1:49765083-49765102 | Msa0887620:intron | 35.0% |
| !! | GTTGTAGACTTGCTATTTCA+GGG | - | chr6_1:49765084-49765103 | Msa0887620:intron | 35.0% |
| ACAACTCACAGAAGAATGAT+CGG | + | chr6_1:49765352-49765371 | None:intergenic | 35.0% | |
| ATCATTCTTCTGTGAGTTGT+TGG | - | chr6_1:49765352-49765371 | Msa0887620:intron | 35.0% | |
| TTGGTGAAAAGTGAAAAGTC+TGG | - | chr6_1:49765608-49765627 | Msa0887620:intron | 35.0% | |
| TAGATTGAGTGTAACCTGAA+TGG | - | chr6_1:49765633-49765652 | Msa0887620:intron | 35.0% | |
| ACAGAAACACTAATCCATTC+AGG | + | chr6_1:49765650-49765669 | None:intergenic | 35.0% | |
| !! | TGTGGTAACAATTTTCTAGC+AGG | - | chr6_1:49765715-49765734 | Msa0887620:intron | 35.0% |
| CCAATCAAATCTAATTGCCA+AGG | + | chr6_1:49765859-49765878 | None:intergenic | 35.0% | |
| CCTTGGCAATTAGATTTGAT+TGG | - | chr6_1:49765856-49765875 | Msa0887620:intron | 35.0% | |
| CAAAACCAATCTAATTGCCA+AGG | + | chr6_1:49765949-49765968 | None:intergenic | 35.0% | |
| AAATACGATTTCGACACGTT+AGG | + | chr6_1:49766548-49766567 | None:intergenic | 35.0% | |
| ! | AAGGTGTTCTTCAATTGACA+AGG | - | chr6_1:49766589-49766608 | Msa0887620:intron | 35.0% |
| AGGTGTTCTTCAATTGACAA+GGG | - | chr6_1:49766590-49766609 | Msa0887620:intron | 35.0% | |
| AAACGCATGCCTATAAATAC+CGG | + | chr6_1:49766618-49766637 | None:intergenic | 35.0% | |
| CATGCGTTTCCCTAAATATT+AGG | - | chr6_1:49766629-49766648 | Msa0887620:intron | 35.0% | |
| GTCAACTCTCCCTAATATTT+AGG | + | chr6_1:49766642-49766661 | None:intergenic | 35.0% | |
| !! | TGAGTGATGGATGAAAGATA+GGG | + | chr6_1:49766714-49766733 | None:intergenic | 35.0% |
| AGCACATACAAATAGTTGCT+TGG | - | chr6_1:49766947-49766966 | Msa0887620:intron | 35.0% | |
| !!! | AAATAGTTGCTTGGTTTTGG+TGG | - | chr6_1:49766956-49766975 | Msa0887620:intron | 35.0% |
| TAGTCATGAAGGGACAAAAT+AGG | + | chr6_1:49767007-49767026 | None:intergenic | 35.0% | |
| GATACGTTCAATAGTCATGA+AGG | + | chr6_1:49767018-49767037 | None:intergenic | 35.0% | |
| CGTATCTAAAGACTATGTCT+CGG | - | chr6_1:49767032-49767051 | Msa0887620:intron | 35.0% | |
| ! | TTTCTTCTTTAGGTTAGAGG+AGG | - | chr6_1:49767185-49767204 | Msa0887620:intron | 35.0% |
| GAATATTTCTTTGTGCACAG+AGG | + | chr6_1:49767261-49767280 | None:intergenic | 35.0% | |
| TGAGAAACACTCTTCATTGA+TGG | + | chr6_1:49767326-49767345 | None:intergenic | 35.0% | |
| CTTGAAGGAAAGTGAGATTA+AGG | + | chr6_1:49767481-49767500 | None:intergenic | 35.0% | |
| GAGGACTTTGTTAATTCACT+TGG | - | chr6_1:49767570-49767589 | Msa0887620:intron | 35.0% | |
| ATCAGTGTTAGTTGTACTCA+TGG | - | chr6_1:49767688-49767707 | Msa0887620:intron | 35.0% | |
| TATGCATCATGCATATATGC+CGG | - | chr6_1:49767816-49767835 | Msa0887620:intron | 35.0% | |
| !!! | TGTTTTAAGACCTTGCTACT+AGG | + | chr6_1:49767877-49767896 | None:intergenic | 35.0% |
| GTTTGCGAAAGATAAGTATG+TGG | - | chr6_1:49768172-49768191 | Msa0887620:CDS | 35.0% | |
| ATATCTTTCTTTATGCTGCC+AGG | + | chr6_1:49768212-49768231 | None:intergenic | 35.0% | |
| TAAAATGTTTCCTTGTCTCG+AGG | - | chr6_1:49768406-49768425 | Msa0887620:CDS | 35.0% | |
| AAAATGTTTCCTTGTCTCGA+GGG | - | chr6_1:49768407-49768426 | Msa0887620:CDS | 35.0% | |
| CACAATTTCCAACCATTTCT+TGG | - | chr6_1:49768572-49768591 | Msa0887620:intron | 35.0% | |
| AAACAGTACCAAGAAATGGT+TGG | + | chr6_1:49768583-49768602 | None:intergenic | 35.0% | |
| !!! | TCTTGGTACTGTTTTTGAAG+GGG | - | chr6_1:49768589-49768608 | Msa0887620:intron | 35.0% |
| ATATCTTTCTTGTTGCCTCC+AGG | + | chr6_1:49763840-49763859 | None:intergenic | 40.0% | |
| GTCCGGAAAATATTGCTGAT+GGG | - | chr6_1:49763868-49763887 | Msa0887620:CDS | 40.0% | |
| ! | ATTGATAGTTCCTTTGACGC+CGG | - | chr6_1:49763927-49763946 | Msa0887620:CDS | 40.0% |
| GAAGTATGCCACATTGTTTC+CGG | + | chr6_1:49763949-49763968 | None:intergenic | 40.0% | |
| AATGTGGCATACTTCTTTGC+CGG | - | chr6_1:49763954-49763973 | Msa0887620:CDS | 40.0% | |
| AAGGGAACCGTATTTGAAAG+TGG | - | chr6_1:49764074-49764093 | Msa0887620:CDS | 40.0% | |
| GTGGAATAGATGCTACAATG+AGG | - | chr6_1:49764093-49764112 | Msa0887620:CDS | 40.0% | |
| GAGCATTTCCCACAATTTCT+TGG | - | chr6_1:49764218-49764237 | Msa0887620:CDS | 40.0% | |
| !!! | AGGCCATTTTTAAAGCCGTT+TGG | + | chr6_1:49764347-49764366 | None:intergenic | 40.0% |
| CCAAGCGAGACATTAAGTAA+AGG | + | chr6_1:49764440-49764459 | None:intergenic | 40.0% | |
| CCTTTACTTAATGTCTCGCT+TGG | - | chr6_1:49764437-49764456 | Msa0887620:intron | 40.0% | |
| ACTTAATGTCTCGCTTGGTT+TGG | - | chr6_1:49764442-49764461 | Msa0887620:intron | 40.0% | |
| GTTTGGTTGTTGTCCAATTC+TGG | - | chr6_1:49764459-49764478 | Msa0887620:intron | 40.0% | |
| TGGTTCTCTCTTGCTCAATT+TGG | - | chr6_1:49764493-49764512 | Msa0887620:intron | 40.0% | |
| CTCTCTTGCTCAATTTGGTT+TGG | - | chr6_1:49764498-49764517 | Msa0887620:intron | 40.0% | |
| !! | CTCTTGCTCAATTTGGTTTG+GGG | - | chr6_1:49764500-49764519 | Msa0887620:intron | 40.0% |
| !! | TTCTGGTTCTTTGCTTGTTC+TGG | - | chr6_1:49764557-49764576 | Msa0887620:intron | 40.0% |
| GATCGAGCAATAGAACAGAA+AGG | + | chr6_1:49764589-49764608 | None:intergenic | 40.0% | |
| TGGTGCATCTAAGAACTTTC+AGG | - | chr6_1:49765238-49765257 | Msa0887620:intron | 40.0% | |
| ! | AGATGATTTTGTCTTGGGGT+GGG | + | chr6_1:49765549-49765568 | None:intergenic | 40.0% |
| ! | TAGATGATTTTGTCTTGGGG+TGG | + | chr6_1:49765550-49765569 | None:intergenic | 40.0% |
| ! | GAAGCATGTGAGACTTTTCT+TGG | - | chr6_1:49765589-49765608 | Msa0887620:intron | 40.0% |
| !! | TTCCATTGTCTTCTAGCTTG+TGG | - | chr6_1:49765697-49765716 | Msa0887620:intron | 40.0% |
| TACCACAAGCTAGAAGACAA+TGG | + | chr6_1:49765702-49765721 | None:intergenic | 40.0% | |
| TTATTACCGCTCCCTAATGT+TGG | - | chr6_1:49766115-49766134 | Msa0887620:intron | 40.0% | |
| TGCTTATTAAGCGCTTACGA+AGG | + | chr6_1:49766293-49766312 | None:intergenic | 40.0% | |
| TCTTGGTTAGGTCATGAAAG+AGG | + | chr6_1:49766410-49766429 | None:intergenic | 40.0% | |
| CAGCTAATTCACTCTTGGTT+AGG | + | chr6_1:49766422-49766441 | None:intergenic | 40.0% | |
| ATGAGCAGCTAATTCACTCT+TGG | + | chr6_1:49766427-49766446 | None:intergenic | 40.0% | |
| CCTTTACACTCAAATGGCTT+CGG | - | chr6_1:49766517-49766536 | Msa0887620:intron | 40.0% | |
| ! | AAGAACACCTTTTGACGAGA+AGG | + | chr6_1:49766580-49766599 | None:intergenic | 40.0% |
| TCTTCAATTGACAAGGGTTC+CGG | - | chr6_1:49766596-49766615 | Msa0887620:intron | 40.0% | |
| ACAAGGGTTCCGGTATTTAT+AGG | - | chr6_1:49766606-49766625 | Msa0887620:intron | 40.0% | |
| !! | AGTGATGGATGAAAGATAGG+GGG | + | chr6_1:49766712-49766731 | None:intergenic | 40.0% |
| !! | GAGTGATGGATGAAAGATAG+GGG | + | chr6_1:49766713-49766732 | None:intergenic | 40.0% |
| !! | GTGAGTGATGGATGAAAGAT+AGG | + | chr6_1:49766715-49766734 | None:intergenic | 40.0% |
| TCATCCATCACTCACCATAT+AGG | - | chr6_1:49766720-49766739 | Msa0887620:intron | 40.0% | |
| CATCCATCACTCACCATATA+GGG | - | chr6_1:49766721-49766740 | Msa0887620:intron | 40.0% | |
| CCTAGATTATGAGCCCTATA+TGG | + | chr6_1:49766737-49766756 | None:intergenic | 40.0% | |
| CCATATAGGGCTCATAATCT+AGG | - | chr6_1:49766734-49766753 | Msa0887620:intron | 40.0% | |
| CCAGATGTGAAGTATATGCA+TGG | + | chr6_1:49766784-49766803 | None:intergenic | 40.0% | |
| CCATGCATATACTTCACATC+TGG | - | chr6_1:49766781-49766800 | Msa0887620:intron | 40.0% | |
| TACCACCAATCTCTTATCAC+GGG | + | chr6_1:49766824-49766843 | None:intergenic | 40.0% | |
| CTACCACCAATCTCTTATCA+CGG | + | chr6_1:49766825-49766844 | None:intergenic | 40.0% | |
| AAATTGGCAGTTCAAGGCAA+AGG | - | chr6_1:49767288-49767307 | Msa0887620:intron | 40.0% | |
| ACCAAGTCTTCTCTTAGAGT+CGG | + | chr6_1:49767543-49767562 | None:intergenic | 40.0% | |
| TGTTAGTTGTACTCATGGTC+TGG | - | chr6_1:49767693-49767712 | Msa0887620:intron | 40.0% | |
| ! | GCAACCGGTTTATCATTAGA+TGG | + | chr6_1:49767737-49767756 | None:intergenic | 40.0% |
| ATCATGCATATATGCCGGAT+TGG | - | chr6_1:49767821-49767840 | Msa0887620:intron | 40.0% | |
| TTAATTCCTCCTTGCCAATC+CGG | + | chr6_1:49767838-49767857 | None:intergenic | 40.0% | |
| ! | GAAAGGGTTCTAGCAAACAT+AGG | + | chr6_1:49768269-49768288 | None:intergenic | 40.0% |
| GAAGTATGCCACATTGTTTC+CGG | + | chr6_1:49763949-49763968 | None:intergenic | 40.0% | |
| CAATGTGGCATACTTCTTTG+CGG | - | chr6_1:49763953-49763972 | Msa0887620:CDS | 40.0% | |
| AATGTGGCATACTTCTTTGC+GGG | - | chr6_1:49763954-49763973 | Msa0887620:CDS | 40.0% | |
| !!! | TCAAGTAATCTGGCTTTTGC+CGG | + | chr6_1:49768368-49768387 | None:intergenic | 40.0% |
| GCAAAAGCCAGATTACTTGA+AGG | - | chr6_1:49768368-49768387 | Msa0887620:intron | 40.0% | |
| GAGGGAACCGTATTTGAAAA+CGG | - | chr6_1:49768425-49768444 | Msa0887620:CDS | 40.0% | |
| ACGGAATAGACGCTATAATG+AGG | - | chr6_1:49768444-49768463 | Msa0887620:CDS | 40.0% | |
| CGGAATAGACGCTATAATGA+GGG | - | chr6_1:49768445-49768464 | Msa0887620:CDS | 40.0% | |
| ! | GGAGATGAATCTTGCGTTTT+AGG | - | chr6_1:49768503-49768522 | Msa0887620:CDS | 40.0% |
| !!! | CTTGGTACTGTTTTTGAAGG+GGG | - | chr6_1:49768590-49768609 | Msa0887620:intron | 40.0% |
| GTGGTTGTGAATTATGCTCC+TGG | - | chr6_1:49763819-49763838 | Msa0887620:CDS | 45.0% | |
| GTTGTGAATTATGCTCCTGG+AGG | - | chr6_1:49763822-49763841 | Msa0887620:CDS | 45.0% | |
| GGTCCGGAAAATATTGCTGA+TGG | - | chr6_1:49763867-49763886 | Msa0887620:CDS | 45.0% | |
| !! | TCAAGTAATCTGGCTTTCGC+TGG | + | chr6_1:49764017-49764036 | None:intergenic | 45.0% |
| GCGAAAGCCAGATTACTTGA+AGG | - | chr6_1:49764017-49764036 | Msa0887620:CDS | 45.0% | |
| AATACGGTTCCCTTGAGACA+AGG | + | chr6_1:49764068-49764087 | None:intergenic | 45.0% | |
| ! | CTTGGAACTGTCTTTGAAGG+TGG | - | chr6_1:49764236-49764255 | Msa0887620:CDS | 45.0% |
| !! | ATTTGGTTTGGGGTTTCTCC+TGG | - | chr6_1:49764510-49764529 | Msa0887620:intron | 45.0% |
| GCGGAAATCAAGGGAAGTAA+TGG | - | chr6_1:49764939-49764958 | Msa0887620:intron | 45.0% | |
| GCAAGTCTACAACATGCTCA+TGG | + | chr6_1:49765077-49765096 | None:intergenic | 45.0% | |
| CTCACAGAAGAATGATCGGA+AGG | + | chr6_1:49765348-49765367 | None:intergenic | 45.0% | |
| ! | ATGATTTTGTCTTGGGGTGG+GGG | + | chr6_1:49765547-49765566 | None:intergenic | 45.0% |
| ! | GATGATTTTGTCTTGGGGTG+GGG | + | chr6_1:49765548-49765567 | None:intergenic | 45.0% |
| CACATGCTTCACTGTCTTTC+AGG | + | chr6_1:49765579-49765598 | None:intergenic | 45.0% | |
| CTAAGGGCTCACCAACATTA+GGG | + | chr6_1:49766129-49766148 | None:intergenic | 45.0% | |
| CCGAAGCCATTTGAGTGTAA+AGG | + | chr6_1:49766520-49766539 | None:intergenic | 45.0% | |
| TCCTTTGCCTTCTCGTCAAA+AGG | - | chr6_1:49766570-49766589 | Msa0887620:intron | 45.0% | |
| ! | ACCTTTTGACGAGAAGGCAA+AGG | + | chr6_1:49766574-49766593 | None:intergenic | 45.0% |
| CATAGCCCGTGATAAGAGAT+TGG | - | chr6_1:49766816-49766835 | Msa0887620:intron | 45.0% | |
| GCATCATGTGCTTAGGAACA+TGG | - | chr6_1:49767060-49767079 | Msa0887620:intron | 45.0% | |
| CTTAGGAACATGGCTATGTG+AGG | - | chr6_1:49767070-49767089 | Msa0887620:intron | 45.0% | |
| AACACTCTTAGGACACTCGA+AGG | + | chr6_1:49767353-49767372 | None:intergenic | 45.0% | |
| TCATGGCAGCTAACACTCTT+AGG | + | chr6_1:49767364-49767383 | None:intergenic | 45.0% | |
| CTTAGAGTCGGACTTTATGC+TGG | + | chr6_1:49767531-49767550 | None:intergenic | 45.0% | |
| ! | TCCGACTCTAAGAGAAGACT+TGG | - | chr6_1:49767539-49767558 | Msa0887620:intron | 45.0% |
| GTGGTTGTGAATTATGCTCC+TGG | - | chr6_1:49763819-49763838 | Msa0887620:CDS | 45.0% | |
| AGAACCCTTTCCTTTGACAC+CGG | - | chr6_1:49768278-49768297 | Msa0887620:CDS | 45.0% | |
| ! | GTTTCCGGTGTCAAAGGAAA+GGG | + | chr6_1:49768285-49768304 | None:intergenic | 45.0% |
| ! | TGTTTCCGGTGTCAAAGGAA+AGG | + | chr6_1:49768286-49768305 | None:intergenic | 45.0% |
| ! | CACATTGTTTCCGGTGTCAA+AGG | + | chr6_1:49768291-49768310 | None:intergenic | 45.0% |
| CTTTGACACCGGAAACAATG+TGG | - | chr6_1:49768289-49768308 | Msa0887620:CDS | 45.0% | |
| CACATTGTTTCCGGCGTCAA+AGG | + | chr6_1:49763940-49763959 | None:intergenic | 50.0% | |
| CTTTGACGCCGGAAACAATG+TGG | - | chr6_1:49763938-49763957 | Msa0887620:CDS | 50.0% | |
| ! | CAGAAGCATGCTCCCAGAAT+TGG | + | chr6_1:49764475-49764494 | None:intergenic | 50.0% |
| ! | CAATTCTGGGAGCATGCTTC+TGG | - | chr6_1:49764473-49764492 | Msa0887620:intron | 50.0% |
| GCTGCCCTTGGCAATTAGAT+TGG | - | chr6_1:49765851-49765870 | Msa0887620:intron | 50.0% | |
| GCTAAGGGCTCACCAACATT+AGG | + | chr6_1:49766130-49766149 | None:intergenic | 50.0% | |
| GGTGAGCCCTTAGCTATTGA+AGG | - | chr6_1:49766136-49766155 | Msa0887620:intron | 50.0% | |
| TAGTTACAAGCTCGCGTCGT+AGG | + | chr6_1:49766664-49766683 | None:intergenic | 50.0% | |
| GAGCCCTATATGGTGAGTGA+TGG | + | chr6_1:49766727-49766746 | None:intergenic | 50.0% | |
| ACTTCACATCTGGCGATGCA+CGG | - | chr6_1:49766791-49766810 | Msa0887620:intron | 50.0% | |
| AGCCCGTGATAAGAGATTGG+TGG | - | chr6_1:49766819-49766838 | Msa0887620:intron | 50.0% | |
| GGTGCATGCATCATGTGCTT+AGG | - | chr6_1:49767053-49767072 | Msa0887620:intron | 50.0% | |
| GGAACATGGCTATGTGAGGA+AGG | - | chr6_1:49767074-49767093 | Msa0887620:intron | 50.0% | |
| TTCTCTCCCACCATGCACAT+GGG | + | chr6_1:49767144-49767163 | None:intergenic | 50.0% | |
| ACTCTTAGGACACTCGAAGG+AGG | + | chr6_1:49767350-49767369 | None:intergenic | 50.0% | |
| !! | GCATATATGCCGGATTGGCA+AGG | - | chr6_1:49767826-49767845 | Msa0887620:intron | 50.0% |
| !! | TATATGCCGGATTGGCAAGG+AGG | - | chr6_1:49767829-49767848 | Msa0887620:intron | 50.0% |
| AATACGGTTCCCTCGAGACA+AGG | + | chr6_1:49768419-49768438 | None:intergenic | 50.0% | |
| ! | GGTTTGGGGTTTCTCCTGGT+AGG | - | chr6_1:49764514-49764533 | Msa0887620:intron | 55.0% |
| TTGGGGTTTCTCCTGGTAGG+TGG | - | chr6_1:49764517-49764536 | Msa0887620:intron | 55.0% | |
| ! | ATTTTGTCTTGGGGTGGGGG+TGG | + | chr6_1:49765544-49765563 | None:intergenic | 55.0% |
| GGCTCACCAACATTAGGGAG+CGG | + | chr6_1:49766124-49766143 | None:intergenic | 55.0% | |
| CTTCTCTCCCACCATGCACA+TGG | + | chr6_1:49767145-49767164 | None:intergenic | 55.0% | |
| ! | CTTTTGCCGGTGAGTGTGGA+GGG | + | chr6_1:49768355-49768374 | None:intergenic | 55.0% |
| ! | CTGGCTTTCGCTGGTGAGTG+TGG | + | chr6_1:49764008-49764027 | None:intergenic | 60.0% |
| AGCACGAGGAACCACCTACC+AGG | + | chr6_1:49764531-49764550 | None:intergenic | 60.0% | |
| GTAACAAAGGGGGCTGCCCT+TGG | - | chr6_1:49765839-49765858 | Msa0887620:intron | 60.0% | |
| TAACAAAGGGGGGCTGCCCT+TGG | - | chr6_1:49765929-49765948 | Msa0887620:intron | 60.0% | |
| CGTCTGGACGTGTGATGCAG+TGG | + | chr6_1:49767108-49767127 | None:intergenic | 60.0% | |
| ACCATGCACATGGGCGTGTG+AGG | + | chr6_1:49767135-49767154 | None:intergenic | 60.0% | |
| TCACACGCCCATGTGCATGG+TGG | - | chr6_1:49767134-49767153 | Msa0887620:intron | 60.0% | |
| CACACGCCCATGTGCATGGT+GGG | - | chr6_1:49767135-49767154 | Msa0887620:intron | 60.0% | |
| TGAGCACCCTCCACACTCAC+CGG | - | chr6_1:49768346-49768365 | Msa0887620:intron | 60.0% | |
| ! | GCTTTTGCCGGTGAGTGTGG+AGG | + | chr6_1:49768356-49768375 | None:intergenic | 60.0% |
| !! | CTGGCTTTTGCCGGTGAGTG+TGG | + | chr6_1:49768359-49768378 | None:intergenic | 60.0% |
| GCCTCACACGCCCATGTGCA+TGG | - | chr6_1:49767131-49767150 | Msa0887620:intron | 65.0% | |
| GGGCGTGTGAGGCATGCGTC+TGG | + | chr6_1:49767124-49767143 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 49763744 | 49768766 | 49763744 | ID=Msa0887620;Name=Msa0887620 |
| chr6_1 | mRNA | 49763744 | 49768766 | 49763744 | ID=Msa0887620-mRNA-1;Parent=Msa0887620;Name=Msa0887620-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|0|0|4|0|419 |
| chr6_1 | exon | 49768612 | 49768766 | 49768612 | ID=Msa0887620-mRNA-1:exon:10281;Parent=Msa0887620-mRNA-1 |
| chr6_1 | exon | 49768374 | 49768575 | 49768374 | ID=Msa0887620-mRNA-1:exon:10280;Parent=Msa0887620-mRNA-1 |
| chr6_1 | exon | 49768102 | 49768349 | 49768102 | ID=Msa0887620-mRNA-1:exon:10279;Parent=Msa0887620-mRNA-1 |
| chr6_1 | exon | 49763744 | 49764398 | 49763744 | ID=Msa0887620-mRNA-1:exon:10278;Parent=Msa0887620-mRNA-1 |
| chr6_1 | CDS | 49768612 | 49768766 | 49768612 | ID=Msa0887620-mRNA-1:cds;Parent=Msa0887620-mRNA-1 |
| chr6_1 | CDS | 49768374 | 49768575 | 49768374 | ID=Msa0887620-mRNA-1:cds;Parent=Msa0887620-mRNA-1 |
| chr6_1 | CDS | 49768102 | 49768349 | 49768102 | ID=Msa0887620-mRNA-1:cds;Parent=Msa0887620-mRNA-1 |
| chr6_1 | CDS | 49763744 | 49764398 | 49763744 | ID=Msa0887620-mRNA-1:cds;Parent=Msa0887620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
