Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853240 | XP_003615144.1 | 94.937 | 316 | 16 | 0 | 1 | 316 | 1 | 316 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853240 | sp|O82161|PHI1_TOBAC | 74.359 | 312 | 71 | 4 | 9 | 316 | 7 | 313 | 2.04e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853240 | G7KBC1 | 94.937 | 316 | 16 | 0 | 1 | 316 | 1 | 316 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0853240 | Msa0853250 | 0.886824 | 2.442316e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853240 | MtrunA17_Chr5g0426441 | 94.855 | 311 | 16 | 0 | 6 | 316 | 648 | 958 | 0.0 | 610 |
| Msa0853240 | MtrunA17_Chr5g0426441 | 92.405 | 316 | 23 | 1 | 1 | 316 | 25 | 339 | 0.0 | 597 |
| Msa0853240 | MtrunA17_Chr5g0426441 | 93.248 | 311 | 20 | 1 | 6 | 316 | 339 | 648 | 0.0 | 593 |
| Msa0853240 | MtrunA17_Chr3g0116001 | 79.125 | 297 | 49 | 3 | 20 | 316 | 21 | 304 | 3.00e-173 | 482 |
| Msa0853240 | MtrunA17_Chr3g0116011 | 78.788 | 297 | 50 | 4 | 20 | 316 | 21 | 304 | 5.84e-172 | 478 |
| Msa0853240 | MtrunA17_Chr3g0115951 | 71.704 | 311 | 84 | 3 | 9 | 316 | 8 | 317 | 3.78e-156 | 439 |
| Msa0853240 | MtrunA17_Chr4g0050321 | 61.053 | 285 | 97 | 3 | 32 | 316 | 30 | 300 | 3.38e-122 | 352 |
| Msa0853240 | MtrunA17_Chr2g0279311 | 53.145 | 318 | 132 | 7 | 1 | 316 | 2 | 304 | 4.86e-118 | 342 |
| Msa0853240 | MtrunA17_Chr4g0018171 | 36.806 | 288 | 160 | 8 | 25 | 301 | 53 | 329 | 5.85e-48 | 164 |
| Msa0853240 | MtrunA17_Chr1g0188071 | 34.528 | 307 | 180 | 7 | 6 | 301 | 33 | 329 | 1.54e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853240 | AT4G08950.1 | 71.477 | 298 | 77 | 5 | 24 | 316 | 20 | 314 | 1.57e-148 | 420 |
| Msa0853240 | AT1G35140.1 | 64.762 | 315 | 104 | 3 | 1 | 315 | 1 | 308 | 1.79e-144 | 409 |
| Msa0853240 | AT5G64260.1 | 56.818 | 308 | 123 | 4 | 10 | 316 | 7 | 305 | 1.75e-120 | 348 |
| Msa0853240 | AT5G09440.1 | 55.150 | 301 | 101 | 7 | 18 | 316 | 10 | 278 | 1.02e-101 | 300 |
| Msa0853240 | AT5G51550.1 | 36.066 | 305 | 173 | 8 | 20 | 313 | 38 | 331 | 1.66e-49 | 168 |
| Msa0853240 | AT3G02970.1 | 31.667 | 300 | 167 | 8 | 47 | 314 | 37 | 330 | 1.84e-45 | 157 |
| Msa0853240 | AT2G35150.1 | 33.846 | 325 | 188 | 11 | 6 | 312 | 1 | 316 | 1.88e-42 | 149 |
| Msa0853240 | AT2G17230.1 | 31.908 | 304 | 185 | 9 | 22 | 313 | 64 | 357 | 5.69e-41 | 146 |
Find 70 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_4:-44981028 | Msa0853240:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.231019 | 5_4:+44980980 | None:intergenic |
| CTCGATGAGGATTACTCTTT+AGG | 0.240993 | 5_4:-44981280 | Msa0853240:CDS |
| GGAACCCACGGTTCTTCTTA+TGG | 0.267702 | 5_4:-44981136 | Msa0853240:CDS |
| TGGATATGTTGGGGACCTTT+TGG | 0.271880 | 5_4:-44980816 | Msa0853240:CDS |
| AACATAAATTCGCATACATT+TGG | 0.287196 | 5_4:-44981093 | Msa0853240:CDS |
| AATCAGTTATGATAGCTCTT+TGG | 0.295676 | 5_4:+44981449 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_4:+44980881 | None:intergenic |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5_4:+44981239 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.324103 | 5_4:+44981016 | None:intergenic |
| ATCAGTTATGATAGCTCTTT+GGG | 0.336613 | 5_4:+44981450 | None:intergenic |
| TACAATGCAAATGGTGATAA+TGG | 0.362381 | 5_4:-44980770 | Msa0853240:CDS |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_4:-44980873 | Msa0853240:CDS |
| ACATAAATTCGCATACATTT+GGG | 0.370983 | 5_4:-44981092 | Msa0853240:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_4:-44980885 | Msa0853240:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_4:+44981028 | None:intergenic |
| AAATCTCAGTCAACCTCATT+TGG | 0.388936 | 5_4:-44981492 | Msa0853240:CDS |
| TGGTCCACAAAGTGCACCTT+TGG | 0.411324 | 5_4:-44981008 | Msa0853240:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.411734 | 5_4:+44981518 | None:intergenic |
| GAGCTTATCCTGGATATGTT+GGG | 0.431353 | 5_4:-44980826 | Msa0853240:CDS |
| GGGACTGTAACCAATCCTTT+TGG | 0.434122 | 5_4:-44980923 | Msa0853240:CDS |
| GAAGCTGCTTCGGCTTGTAC+TGG | 0.438736 | 5_4:-44980863 | Msa0853240:CDS |
| TCTTATGGTGCACGCGTGAA+TGG | 0.440385 | 5_4:-44981121 | Msa0853240:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_4:+44981539 | None:intergenic |
| AGCTGTTAGAACAACGTTGA+TGG | 0.452654 | 5_4:+44981198 | None:intergenic |
| TTTAAGTTGTTGGTCCGATT+CGG | 0.453958 | 5_4:+44981549 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+AGG | 0.456460 | 5_4:-44980848 | Msa0853240:CDS |
| GGAGCTTATCCTGGATATGT+TGG | 0.467140 | 5_4:-44980827 | Msa0853240:CDS |
| AATAACGATGTGGGTCTTGA+CGG | 0.470820 | 5_4:-44980977 | Msa0853240:CDS |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5_4:-44981235 | Msa0853240:CDS |
| AAAAGGTCCCCAACATATCC+AGG | 0.476468 | 5_4:+44980818 | None:intergenic |
| TGAAAATAACCATCACCAAA+AGG | 0.492485 | 5_4:+44980908 | None:intergenic |
| TATGCTAAAGGAGCTTATCC+TGG | 0.492712 | 5_4:-44980836 | Msa0853240:CDS |
| GACGTGGTTGTTCCTCGTTT+AGG | 0.494909 | 5_4:+44981406 | None:intergenic |
| TGCTAGAAAACTCACCGAAT+CGG | 0.497206 | 5_4:-44981563 | Msa0853240:CDS |
| TCAGTCAACCTCATTTGGTA+TGG | 0.501216 | 5_4:-44981487 | Msa0853240:CDS |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5_4:-44981178 | Msa0853240:CDS |
| AAATTCGCATACATTTGGGT+TGG | 0.526466 | 5_4:-44981088 | Msa0853240:CDS |
| GCAACCAAAGGTGCACTTTG+TGG | 0.529656 | 5_4:+44981004 | None:intergenic |
| TCCTCGTTTAGGAGAAGAGA+GGG | 0.533776 | 5_4:+44981417 | None:intergenic |
| CGATGTGGGTCTTGACGGAA+TGG | 0.534055 | 5_4:-44980972 | Msa0853240:CDS |
| TCGTTATTTGGTGCAACCAA+AGG | 0.539712 | 5_4:+44980992 | None:intergenic |
| GCTAAACTAGCTCTCTCACT+AGG | 0.543046 | 5_4:-44981313 | Msa0853240:CDS |
| ATAACCATCACCAAAAGGAT+TGG | 0.543866 | 5_4:+44980913 | None:intergenic |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.547348 | 5_4:-44981517 | Msa0853240:CDS |
| GTTATGATAGCTCTTTGGGA+TGG | 0.549152 | 5_4:+44981454 | None:intergenic |
| ATGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_4:-44980766 | Msa0853240:CDS |
| AACCTCAGTTTGTTCTACGT+TGG | 0.567385 | 5_4:-44980711 | Msa0853240:CDS |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_4:+44981379 | None:intergenic |
| GGTGCTAGCTACAATGCAAA+TGG | 0.590428 | 5_4:-44980779 | Msa0853240:CDS |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_4:-44981064 | Msa0853240:CDS |
| AGCTTATCCTGGATATGTTG+GGG | 0.597815 | 5_4:-44980825 | Msa0853240:CDS |
| TCAAGTAGGTGTGGAACCCA+CGG | 0.602320 | 5_4:-44981148 | Msa0853240:CDS |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.609562 | 5_4:+44980869 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_4:-44981381 | Msa0853240:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_4:+44981020 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.612359 | 5_4:-44980987 | Msa0853240:CDS |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_4:-44981532 | Msa0853240:CDS |
| TTCCTCGTTTAGGAGAAGAG+AGG | 0.628736 | 5_4:+44981416 | None:intergenic |
| GTTGCACCAAATAACGATGT+GGG | 0.631307 | 5_4:-44980986 | Msa0853240:CDS |
| TCGTTTAGGAGAAGAGAGGG+AGG | 0.643573 | 5_4:+44981420 | None:intergenic |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_4:+44981369 | None:intergenic |
| AGGTGCTCAAATTCTCGATG+AGG | 0.663684 | 5_4:-44981293 | Msa0853240:CDS |
| TGCACCATAAGAAGAACCGT+GGG | 0.675126 | 5_4:+44981132 | None:intergenic |
| GTGCACCATAAGAAGAACCG+TGG | 0.675290 | 5_4:+44981131 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.679785 | 5_4:-44981051 | Msa0853240:CDS |
| GGCAACTGATGGTTGTGACG+TGG | 0.693973 | 5_4:+44981390 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_4:-44981384 | Msa0853240:CDS |
| TACCAACGTAGAACAAACTG+AGG | 0.704895 | 5_4:+44980709 | None:intergenic |
| TCCCTCTCTTCTCCTAAACG+AGG | 0.714038 | 5_4:-44981418 | Msa0853240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | + | chr5_4:44980804-44980823 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | - | chr5_4:44980808-44980827 | Msa0853240:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | + | chr5_4:44981013-44981032 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | - | chr5_4:44981247-44981266 | Msa0853240:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | - | chr5_4:44981248-44981267 | Msa0853240:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | + | chr5_4:44980804-44980823 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | - | chr5_4:44980808-44980827 | Msa0853240:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | + | chr5_4:44981013-44981032 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | - | chr5_4:44981247-44981266 | Msa0853240:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | - | chr5_4:44981248-44981267 | Msa0853240:CDS | 25.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | + | chr5_4:44980864-44980883 | None:intergenic | 30.0% |
| ATCAGTTATGATAGCTCTTT+GGG | + | chr5_4:44980893-44980912 | None:intergenic | 30.0% | |
| AATCAGTTATGATAGCTCTT+TGG | + | chr5_4:44980894-44980913 | None:intergenic | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | + | chr5_4:44981435-44981454 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | - | chr5_4:44981435-44981454 | Msa0853240:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | - | chr5_4:44981570-44981589 | Msa0853240:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | + | chr5_4:44980864-44980883 | None:intergenic | 30.0% |
| ATCAGTTATGATAGCTCTTT+GGG | + | chr5_4:44980893-44980912 | None:intergenic | 30.0% | |
| AATCAGTTATGATAGCTCTT+TGG | + | chr5_4:44980894-44980913 | None:intergenic | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | + | chr5_4:44981435-44981454 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | - | chr5_4:44981435-44981454 | Msa0853240:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | - | chr5_4:44981570-44981589 | Msa0853240:CDS | 30.0% | |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | + | chr5_4:44980794-44980813 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | - | chr5_4:44980848-44980867 | Msa0853240:CDS | 35.0% | |
| !! | ACTTTTTATTGTTGGTGAGC+TGG | + | chr5_4:44981005-44981024 | None:intergenic | 35.0% |
| TTGATGCGAGTTTAAGGATT+TGG | + | chr5_4:44981104-44981123 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | - | chr5_4:44981105-44981124 | Msa0853240:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | - | chr5_4:44981178-44981197 | Msa0853240:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | - | chr5_4:44981252-44981271 | Msa0853240:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | + | chr5_4:44981315-44981334 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | - | chr5_4:44981312-44981331 | Msa0853240:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | + | chr5_4:44981323-44981342 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | - | chr5_4:44981396-44981415 | Msa0853240:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | - | chr5_4:44981397-44981416 | Msa0853240:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | + | chr5_4:44981430-44981449 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+AGG | - | chr5_4:44981492-44981511 | Msa0853240:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | - | chr5_4:44981574-44981593 | Msa0853240:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+TGG | + | chr5_4:44981627-44981646 | None:intergenic | 35.0% |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | + | chr5_4:44980794-44980813 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | - | chr5_4:44980848-44980867 | Msa0853240:CDS | 35.0% | |
| !! | ACTTTTTATTGTTGGTGAGC+TGG | + | chr5_4:44981005-44981024 | None:intergenic | 35.0% |
| TTGATGCGAGTTTAAGGATT+TGG | + | chr5_4:44981104-44981123 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | - | chr5_4:44981105-44981124 | Msa0853240:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | - | chr5_4:44981178-44981197 | Msa0853240:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | - | chr5_4:44981252-44981271 | Msa0853240:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | + | chr5_4:44981315-44981334 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | - | chr5_4:44981312-44981331 | Msa0853240:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | + | chr5_4:44981323-44981342 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | - | chr5_4:44981396-44981415 | Msa0853240:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | - | chr5_4:44981397-44981416 | Msa0853240:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | + | chr5_4:44981430-44981449 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+AGG | - | chr5_4:44981492-44981511 | Msa0853240:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | - | chr5_4:44981574-44981593 | Msa0853240:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+TGG | + | chr5_4:44981627-44981646 | None:intergenic | 35.0% |
| TGCTAGAAAACTCACCGAAT+CGG | - | chr5_4:44980777-44980796 | Msa0853240:CDS | 40.0% | |
| ! | AGATTTTGCCAGTGAGAAGA+GGG | + | chr5_4:44980834-44980853 | None:intergenic | 40.0% |
| TCAGTCAACCTCATTTGGTA+TGG | - | chr5_4:44980853-44980872 | Msa0853240:CDS | 40.0% | |
| ! | GTTATGATAGCTCTTTGGGA+TGG | + | chr5_4:44980889-44980908 | None:intergenic | 40.0% |
| CTCGATGAGGATTACTCTTT+AGG | - | chr5_4:44981060-44981079 | Msa0853240:CDS | 40.0% | |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | + | chr5_4:44981110-44981129 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | + | chr5_4:44981145-44981164 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | - | chr5_4:44981183-44981202 | Msa0853240:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | - | chr5_4:44981276-44981295 | Msa0853240:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | + | chr5_4:44981327-44981346 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | + | chr5_4:44981351-44981370 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | - | chr5_4:44981354-44981373 | Msa0853240:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | + | chr5_4:44981363-44981382 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | - | chr5_4:44981363-44981382 | Msa0853240:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | - | chr5_4:44981423-44981442 | Msa0853240:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | - | chr5_4:44981504-44981523 | Msa0853240:CDS | 40.0% | |
| GAGCTTATCCTGGATATGTT+GGG | - | chr5_4:44981514-44981533 | Msa0853240:CDS | 40.0% | |
| AGCTTATCCTGGATATGTTG+GGG | - | chr5_4:44981515-44981534 | Msa0853240:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | + | chr5_4:44981542-44981561 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | - | chr5_4:44981540-44981559 | Msa0853240:CDS | 40.0% |
| !! | GTTTTTGGATCAACAATCGC+AGG | + | chr5_4:44981612-44981631 | None:intergenic | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | - | chr5_4:44981629-44981648 | Msa0853240:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | + | chr5_4:44981634-44981653 | None:intergenic | 40.0% | |
| TGCTAGAAAACTCACCGAAT+CGG | - | chr5_4:44980777-44980796 | Msa0853240:CDS | 40.0% | |
| ! | AGATTTTGCCAGTGAGAAGA+GGG | + | chr5_4:44980834-44980853 | None:intergenic | 40.0% |
| TCAGTCAACCTCATTTGGTA+TGG | - | chr5_4:44980853-44980872 | Msa0853240:CDS | 40.0% | |
| ! | GTTATGATAGCTCTTTGGGA+TGG | + | chr5_4:44980889-44980908 | None:intergenic | 40.0% |
| CTCGATGAGGATTACTCTTT+AGG | - | chr5_4:44981060-44981079 | Msa0853240:CDS | 40.0% | |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | + | chr5_4:44981110-44981129 | None:intergenic | 40.0% |
| AGCTGTTAGAACAACGTTGA+TGG | + | chr5_4:44981145-44981164 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | - | chr5_4:44981183-44981202 | Msa0853240:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | - | chr5_4:44981276-44981295 | Msa0853240:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | + | chr5_4:44981327-44981346 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | + | chr5_4:44981351-44981370 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | - | chr5_4:44981354-44981373 | Msa0853240:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | + | chr5_4:44981363-44981382 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | - | chr5_4:44981363-44981382 | Msa0853240:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | - | chr5_4:44981423-44981442 | Msa0853240:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | - | chr5_4:44981504-44981523 | Msa0853240:CDS | 40.0% | |
| GAGCTTATCCTGGATATGTT+GGG | - | chr5_4:44981514-44981533 | Msa0853240:CDS | 40.0% | |
| AGCTTATCCTGGATATGTTG+GGG | - | chr5_4:44981515-44981534 | Msa0853240:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | + | chr5_4:44981542-44981561 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | - | chr5_4:44981540-44981559 | Msa0853240:CDS | 40.0% |
| !! | GTTTTTGGATCAACAATCGC+AGG | + | chr5_4:44981612-44981631 | None:intergenic | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | - | chr5_4:44981629-44981648 | Msa0853240:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | + | chr5_4:44981634-44981653 | None:intergenic | 40.0% | |
| ! | GAGATTTTGCCAGTGAGAAG+AGG | + | chr5_4:44980835-44980854 | None:intergenic | 45.0% |
| TCCTCGTTTAGGAGAAGAGA+GGG | + | chr5_4:44980926-44980945 | None:intergenic | 45.0% | |
| TTCCTCGTTTAGGAGAAGAG+AGG | + | chr5_4:44980927-44980946 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | + | chr5_4:44980974-44980993 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | - | chr5_4:44981027-44981046 | Msa0853240:CDS | 45.0% |
| AGGTGCTCAAATTCTCGATG+AGG | - | chr5_4:44981047-44981066 | Msa0853240:CDS | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | - | chr5_4:44981162-44981181 | Msa0853240:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | + | chr5_4:44981211-44981230 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | - | chr5_4:44981353-44981372 | Msa0853240:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | - | chr5_4:44981417-44981436 | Msa0853240:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | - | chr5_4:44981455-44981474 | Msa0853240:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | + | chr5_4:44981462-44981481 | None:intergenic | 45.0% |
| GGAGCTTATCCTGGATATGT+TGG | - | chr5_4:44981513-44981532 | Msa0853240:CDS | 45.0% | |
| AAAAGGTCCCCAACATATCC+AGG | + | chr5_4:44981525-44981544 | None:intergenic | 45.0% | |
| ! | TGGATATGTTGGGGACCTTT+TGG | - | chr5_4:44981524-44981543 | Msa0853240:CDS | 45.0% |
| ! | ATATGTTGGGGACCTTTTGG+TGG | - | chr5_4:44981527-44981546 | Msa0853240:CDS | 45.0% |
| GGTGCTAGCTACAATGCAAA+TGG | - | chr5_4:44981561-44981580 | Msa0853240:CDS | 45.0% | |
| ! | GAGATTTTGCCAGTGAGAAG+AGG | + | chr5_4:44980835-44980854 | None:intergenic | 45.0% |
| TCCTCGTTTAGGAGAAGAGA+GGG | + | chr5_4:44980926-44980945 | None:intergenic | 45.0% | |
| TTCCTCGTTTAGGAGAAGAG+AGG | + | chr5_4:44980927-44980946 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | + | chr5_4:44980974-44980993 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | - | chr5_4:44981027-44981046 | Msa0853240:CDS | 45.0% |
| AGGTGCTCAAATTCTCGATG+AGG | - | chr5_4:44981047-44981066 | Msa0853240:CDS | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | - | chr5_4:44981162-44981181 | Msa0853240:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | + | chr5_4:44981211-44981230 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | - | chr5_4:44981353-44981372 | Msa0853240:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | - | chr5_4:44981417-44981436 | Msa0853240:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | - | chr5_4:44981455-44981474 | Msa0853240:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | + | chr5_4:44981462-44981481 | None:intergenic | 45.0% |
| GGAGCTTATCCTGGATATGT+TGG | - | chr5_4:44981513-44981532 | Msa0853240:CDS | 45.0% | |
| AAAAGGTCCCCAACATATCC+AGG | + | chr5_4:44981525-44981544 | None:intergenic | 45.0% | |
| ! | TGGATATGTTGGGGACCTTT+TGG | - | chr5_4:44981524-44981543 | Msa0853240:CDS | 45.0% |
| ! | ATATGTTGGGGACCTTTTGG+TGG | - | chr5_4:44981527-44981546 | Msa0853240:CDS | 45.0% |
| GGTGCTAGCTACAATGCAAA+TGG | - | chr5_4:44981561-44981580 | Msa0853240:CDS | 45.0% | |
| TCGTTTAGGAGAAGAGAGGG+AGG | + | chr5_4:44980923-44980942 | None:intergenic | 50.0% | |
| TCCCTCTCTTCTCCTAAACG+AGG | - | chr5_4:44980922-44980941 | Msa0853240:CDS | 50.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | + | chr5_4:44980937-44980956 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+CGG | - | chr5_4:44981192-44981211 | Msa0853240:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | - | chr5_4:44981204-44981223 | Msa0853240:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | + | chr5_4:44981212-44981231 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | - | chr5_4:44981219-44981238 | Msa0853240:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | - | chr5_4:44981289-44981308 | Msa0853240:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | - | chr5_4:44981332-44981351 | Msa0853240:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | + | chr5_4:44981339-44981358 | None:intergenic | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | - | chr5_4:44981467-44981486 | Msa0853240:CDS | 50.0% |
| TCGTTTAGGAGAAGAGAGGG+AGG | + | chr5_4:44980923-44980942 | None:intergenic | 50.0% | |
| TCCCTCTCTTCTCCTAAACG+AGG | - | chr5_4:44980922-44980941 | Msa0853240:CDS | 50.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | + | chr5_4:44980937-44980956 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+CGG | - | chr5_4:44981192-44981211 | Msa0853240:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | - | chr5_4:44981204-44981223 | Msa0853240:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | + | chr5_4:44981212-44981231 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | - | chr5_4:44981219-44981238 | Msa0853240:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | - | chr5_4:44981289-44981308 | Msa0853240:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | - | chr5_4:44981332-44981351 | Msa0853240:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | + | chr5_4:44981339-44981358 | None:intergenic | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | - | chr5_4:44981467-44981486 | Msa0853240:CDS | 50.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | + | chr5_4:44980825-44980844 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | - | chr5_4:44980823-44980842 | Msa0853240:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | + | chr5_4:44980953-44980972 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | - | chr5_4:44980956-44980975 | Msa0853240:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | - | chr5_4:44980959-44980978 | Msa0853240:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | + | chr5_4:44980964-44980983 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | - | chr5_4:44981368-44981387 | Msa0853240:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | + | chr5_4:44981474-44981493 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | - | chr5_4:44981477-44981496 | Msa0853240:CDS | 55.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | + | chr5_4:44980825-44980844 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | - | chr5_4:44980823-44980842 | Msa0853240:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | + | chr5_4:44980953-44980972 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | - | chr5_4:44980956-44980975 | Msa0853240:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | - | chr5_4:44980959-44980978 | Msa0853240:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | + | chr5_4:44980964-44980983 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | - | chr5_4:44981368-44981387 | Msa0853240:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | + | chr5_4:44981474-44981493 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | - | chr5_4:44981477-44981496 | Msa0853240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 44980706 | 44981656 | 44980706 | ID=Msa0853240;Name=Msa0853240 |
| chr5_4 | mRNA | 44980706 | 44981656 | 44980706 | ID=Msa0853240-mRNA-1;Parent=Msa0853240;Name=Msa0853240-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|316 |
| chr5_4 | exon | 44980706 | 44981656 | 44980706 | ID=Msa0853240-mRNA-1:exon:14205;Parent=Msa0853240-mRNA-1 |
| chr5_4 | CDS | 44980706 | 44981656 | 44980706 | ID=Msa0853240-mRNA-1:cds;Parent=Msa0853240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
