Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853250 | RHN56160.1 | 90.214 | 654 | 34 | 2 | 1 | 654 | 25 | 648 | 0.0 | 1190 |
| Msa0853250 | RHN56160.1 | 90.278 | 648 | 34 | 2 | 7 | 654 | 340 | 958 | 0.0 | 1182 |
| Msa0853250 | RHN56160.1 | 91.159 | 328 | 28 | 1 | 327 | 654 | 13 | 339 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853250 | sp|O82161|PHI1_TOBAC | 73.718 | 312 | 73 | 4 | 347 | 654 | 7 | 313 | 1.54e-158 | 461 |
| Msa0853250 | sp|O82161|PHI1_TOBAC | 72.436 | 312 | 76 | 6 | 9 | 315 | 7 | 313 | 6.11e-153 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853250 | A0A396HS48 | 90.214 | 654 | 34 | 2 | 1 | 654 | 25 | 648 | 0.0 | 1190 |
| Msa0853250 | A0A396HS48 | 90.278 | 648 | 34 | 2 | 7 | 654 | 340 | 958 | 0.0 | 1182 |
| Msa0853250 | A0A396HS48 | 91.159 | 328 | 28 | 1 | 327 | 654 | 13 | 339 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731870 | Msa0853250 | 0.841912 | 3.564163e-58 | -8.615850e-47 |
| Msa0731980 | Msa0853250 | 0.827858 | 1.240301e-54 | -8.615850e-47 |
| Msa0731990 | Msa0853250 | 0.830369 | 3.053226e-55 | -8.615850e-47 |
| Msa0732010 | Msa0853250 | 0.808886 | 2.484769e-50 | -8.615850e-47 |
| Msa0746550 | Msa0853250 | 0.803515 | 3.360759e-49 | -8.615850e-47 |
| Msa0772980 | Msa0853250 | 0.810035 | 1.407821e-50 | -8.615850e-47 |
| Msa0810190 | Msa0853250 | 0.877009 | 8.856963e-69 | -8.615850e-47 |
| Msa0810250 | Msa0853250 | 0.822650 | 2.115068e-53 | -8.615850e-47 |
| Msa0418300 | Msa0853250 | 0.809013 | 2.333563e-50 | -8.615850e-47 |
| Msa0464670 | Msa0853250 | 0.810183 | 1.308164e-50 | -8.615850e-47 |
| Msa0358010 | Msa0853250 | 0.805050 | 1.609769e-49 | -8.615850e-47 |
| Msa0510120 | Msa0853250 | 0.840152 | 1.032738e-57 | -8.615850e-47 |
| Msa0511820 | Msa0853250 | 0.859767 | 3.293657e-63 | -8.615850e-47 |
| Msa0581390 | Msa0853250 | 0.803978 | 2.692578e-49 | -8.615850e-47 |
| Msa0853240 | Msa0853250 | 0.886824 | 2.442316e-72 | -8.615850e-47 |
| Msa0853250 | Msa1221320 | 0.824886 | 6.331024e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853250 | MtrunA17_Chr5g0426441 | 90.214 | 654 | 34 | 2 | 1 | 654 | 25 | 648 | 0.0 | 1190 |
| Msa0853250 | MtrunA17_Chr5g0426441 | 90.278 | 648 | 34 | 2 | 7 | 654 | 340 | 958 | 0.0 | 1182 |
| Msa0853250 | MtrunA17_Chr5g0426441 | 91.159 | 328 | 28 | 1 | 327 | 654 | 13 | 339 | 0.0 | 608 |
| Msa0853250 | MtrunA17_Chr3g0116011 | 78.114 | 297 | 52 | 3 | 358 | 654 | 21 | 304 | 8.26e-166 | 476 |
| Msa0853250 | MtrunA17_Chr3g0116011 | 77.083 | 288 | 53 | 3 | 22 | 309 | 24 | 298 | 5.64e-159 | 459 |
| Msa0853250 | MtrunA17_Chr3g0116001 | 78.451 | 297 | 51 | 3 | 358 | 654 | 21 | 304 | 2.08e-165 | 475 |
| Msa0853250 | MtrunA17_Chr3g0116001 | 76.531 | 294 | 56 | 3 | 22 | 315 | 24 | 304 | 2.46e-160 | 462 |
| Msa0853250 | MtrunA17_Chr3g0115951 | 71.061 | 311 | 86 | 3 | 347 | 654 | 8 | 317 | 1.59e-150 | 438 |
| Msa0853250 | MtrunA17_Chr3g0115951 | 72.131 | 305 | 80 | 4 | 8 | 308 | 7 | 310 | 1.07e-146 | 428 |
| Msa0853250 | MtrunA17_Chr4g0050321 | 61.053 | 285 | 97 | 3 | 370 | 654 | 30 | 300 | 3.89e-117 | 352 |
| Msa0853250 | MtrunA17_Chr4g0050321 | 60.000 | 285 | 100 | 3 | 31 | 315 | 30 | 300 | 4.16e-114 | 344 |
| Msa0853250 | MtrunA17_Chr2g0279311 | 52.516 | 318 | 136 | 6 | 338 | 654 | 1 | 304 | 3.89e-114 | 344 |
| Msa0853250 | MtrunA17_Chr2g0279311 | 53.871 | 310 | 127 | 6 | 1 | 308 | 2 | 297 | 2.98e-113 | 342 |
| Msa0853250 | MtrunA17_Chr4g0018171 | 36.082 | 291 | 164 | 8 | 21 | 300 | 50 | 329 | 1.24e-45 | 165 |
| Msa0853250 | MtrunA17_Chr4g0018171 | 36.111 | 288 | 162 | 8 | 363 | 639 | 53 | 329 | 1.55e-45 | 165 |
| Msa0853250 | MtrunA17_Chr1g0188071 | 33.856 | 319 | 190 | 7 | 344 | 651 | 33 | 341 | 7.29e-44 | 160 |
| Msa0853250 | MtrunA17_Chr1g0188071 | 35.395 | 291 | 167 | 8 | 21 | 300 | 49 | 329 | 5.88e-43 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853250 | AT4G08950.1 | 72.241 | 299 | 73 | 6 | 362 | 654 | 20 | 314 | 4.47e-143 | 419 |
| Msa0853250 | AT4G08950.1 | 71.572 | 299 | 75 | 6 | 23 | 315 | 20 | 314 | 7.07e-141 | 413 |
| Msa0853250 | AT1G35140.1 | 65.397 | 315 | 102 | 3 | 339 | 653 | 1 | 308 | 2.80e-138 | 407 |
| Msa0853250 | AT1G35140.1 | 63.548 | 310 | 107 | 2 | 1 | 310 | 1 | 304 | 2.49e-135 | 399 |
| Msa0853250 | AT5G64260.1 | 57.143 | 308 | 122 | 4 | 348 | 654 | 7 | 305 | 1.65e-115 | 348 |
| Msa0853250 | AT5G64260.1 | 58.416 | 303 | 113 | 6 | 10 | 309 | 7 | 299 | 4.02e-114 | 344 |
| Msa0853250 | AT5G09440.1 | 55.482 | 301 | 100 | 7 | 356 | 654 | 10 | 278 | 4.37e-97 | 300 |
| Msa0853250 | AT5G09440.1 | 57.664 | 274 | 87 | 6 | 44 | 315 | 32 | 278 | 9.96e-95 | 293 |
| Msa0853250 | AT5G51550.1 | 35.738 | 305 | 174 | 8 | 358 | 651 | 38 | 331 | 8.69e-47 | 169 |
| Msa0853250 | AT5G51550.1 | 36.770 | 291 | 162 | 8 | 21 | 300 | 40 | 319 | 1.84e-45 | 165 |
| Msa0853250 | AT3G02970.1 | 31.438 | 299 | 169 | 7 | 385 | 652 | 37 | 330 | 2.78e-42 | 156 |
| Msa0853250 | AT3G02970.1 | 31.081 | 296 | 168 | 7 | 46 | 310 | 37 | 327 | 2.21e-41 | 154 |
| Msa0853250 | AT2G35150.1 | 34.906 | 318 | 178 | 11 | 8 | 305 | 2 | 310 | 4.45e-41 | 152 |
| Msa0853250 | AT2G35150.1 | 33.846 | 325 | 188 | 11 | 344 | 650 | 1 | 316 | 2.37e-39 | 147 |
| Msa0853250 | AT2G17230.1 | 32.895 | 304 | 182 | 9 | 360 | 651 | 64 | 357 | 6.62e-41 | 153 |
| Msa0853250 | AT2G17230.1 | 32.566 | 304 | 183 | 9 | 19 | 310 | 62 | 355 | 3.54e-39 | 148 |
Find 148 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAGTTTA+TGG | 0.180446 | 5_4:-44991154 | Msa0853250:CDS |
| TTGATGCGAGTTTAAGAATT+TGG | 0.184159 | 5_4:+44991365 | None:intergenic |
| TCTTATGGTGCACGTGTAAA+TGG | 0.207934 | 5_4:-44991247 | Msa0853250:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5_4:+44991106 | None:intergenic |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5_4:+44995378 | None:intergenic |
| TCTTATGGTGCACGCGTAAA+TGG | 0.225421 | 5_4:-44995519 | Msa0853250:CDS |
| CTTGATGAGAATTACTCTTT+AGG | 0.255316 | 5_4:-44991406 | Msa0853250:CDS |
| AGAACAAAGTATGAAGTAAA+AGG | 0.265458 | 5_4:+44991802 | None:intergenic |
| TGGTTATGCCGGGGCCCTTT+TGG | 0.268263 | 5_4:-44990942 | Msa0853250:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_4:-44991262 | Msa0853250:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_4:-44995534 | Msa0853250:CDS |
| CTTGACGAGAATTACTCTTT+AGG | 0.286620 | 5_4:-44995678 | Msa0853250:CDS |
| AATCAGTTATGATGGCTCTT+TGG | 0.297339 | 5_4:+44991575 | None:intergenic |
| GTTAACTGATTTCTTGTTGC+TGG | 0.303336 | 5_4:+44991456 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_4:+44995414 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_4:+44991007 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_4:+44995279 | None:intergenic |
| TAACTTAAAAGATGCCATTT+GGG | 0.308794 | 5_4:+44991765 | None:intergenic |
| GAAACAAGTTCGCATACATT+TGG | 0.312643 | 5_4:-44991219 | Msa0853250:CDS |
| GAAACAAGTTTGCGTACATT+TGG | 0.315193 | 5_4:-44995491 | Msa0853250:CDS |
| TCCATACCAAATGATGTTTA+CGG | 0.318337 | 5_4:+44995884 | None:intergenic |
| TTAACTTAAAAGATGCCATT+TGG | 0.342966 | 5_4:+44991764 | None:intergenic |
| GTAGTGAAATTGTGAGAAAA+AGG | 0.348381 | 5_4:+44991728 | None:intergenic |
| AAATTTCCGTAAACATCATT+TGG | 0.360811 | 5_4:-44995890 | Msa0853250:CDS |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_4:-44990999 | Msa0853250:CDS |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_4:-44995271 | Msa0853250:CDS |
| ATCAGTTATGATGGCTCTTT+GGG | 0.364014 | 5_4:+44991576 | None:intergenic |
| CCATAAATTGGTTGGTGAAA+AGG | 0.364618 | 5_4:+44995426 | None:intergenic |
| TTGACGCGAGTTTAACGATT+TGG | 0.366058 | 5_4:+44995637 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_4:-44991011 | Msa0853250:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_4:-44995283 | Msa0853250:CDS |
| AAATCTCAATCAACCTCATT+TGG | 0.382865 | 5_4:-44991618 | Msa0853250:CDS |
| CGGTTAAAAGAGGGCCTTTG+TGG | 0.388607 | 5_4:+44995916 | None:intergenic |
| TAACCAATCCCTTTGGTAAT+GGG | 0.389873 | 5_4:-44991042 | Msa0853250:CDS |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5_4:-44991103 | Msa0853250:CDS |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5_4:-44995375 | Msa0853250:CDS |
| AAACAAGTTTGCGTACATTT+GGG | 0.392745 | 5_4:-44995490 | Msa0853250:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_4:-44995168 | Msa0853250:CDS |
| GCTGCTGATGTGTTAGTTGA+TGG | 0.394680 | 5_4:-44991304 | Msa0853250:CDS |
| AAACAAGTTCGCATACATTT+GGG | 0.395889 | 5_4:-44991218 | Msa0853250:CDS |
| CCATAAACTGGTTGGTGAAA+TGG | 0.407346 | 5_4:+44991154 | None:intergenic |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.407467 | 5_4:+44991644 | None:intergenic |
| GCAGCTGATGTGTTAGTTGA+TGG | 0.407698 | 5_4:-44995576 | Msa0853250:CDS |
| GCACTTTGTGGACCATAAAC+TGG | 0.415279 | 5_4:+44991142 | None:intergenic |
| ATCGTTAAACTCGCGTCAAA+AGG | 0.419827 | 5_4:-44995633 | Msa0853250:CDS |
| TACAACGCTAATGGTGATAA+TGG | 0.420824 | 5_4:-44990896 | Msa0853250:CDS |
| GATGGTTGTGATGTGGTTGT+TGG | 0.425520 | 5_4:+44995795 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_4:-44995225 | Msa0853250:CDS |
| TCCGTAAACATCATTTGGTA+TGG | 0.445565 | 5_4:-44995885 | Msa0853250:CDS |
| CTAACACATCAGCTGCTGTT+AGG | 0.449185 | 5_4:+44995583 | None:intergenic |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_4:+44991665 | None:intergenic |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5_4:+44991311 | None:intergenic |
| GGAACCGTAACCAATCCTTT+TGG | 0.451430 | 5_4:-44995321 | Msa0853250:CDS |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_4:+44995306 | None:intergenic |
| TGCTGTTAGGACAACGTTGA+TGG | 0.463697 | 5_4:+44995596 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_4:+44991130 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_4:+44995402 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+CGG | 0.469136 | 5_4:-44990953 | Msa0853250:CDS |
| GTAACCAATCCCTTTGGTAA+TGG | 0.469838 | 5_4:-44991043 | Msa0853250:CDS |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_4:-44990989 | Msa0853250:CDS |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_4:-44995261 | Msa0853250:CDS |
| TGTACCGGTGTTTATGCTAA+AGG | 0.481549 | 5_4:-44990974 | Msa0853250:CDS |
| TGTACCGGTGTTTATGCTAA+AGG | 0.481549 | 5_4:-44995246 | Msa0853250:CDS |
| ATTCTTAAACTCGCATCAAA+AGG | 0.483182 | 5_4:-44991361 | Msa0853250:CDS |
| ATTACCAAAGGGATTGGTTA+CGG | 0.486659 | 5_4:+44991045 | None:intergenic |
| ATATCCATTACCAAAAGGAT+TGG | 0.488324 | 5_4:+44995311 | None:intergenic |
| ATACCCATTACCAAAGGGAT+TGG | 0.490983 | 5_4:+44991039 | None:intergenic |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5_4:+44991324 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5_4:-44991613 | Msa0853250:CDS |
| GATGGTTGTGTTGTGGCTGT+TGG | 0.492456 | 5_4:+44991523 | None:intergenic |
| AGCTAGAAAACTCACTGAAT+CGG | 0.492474 | 5_4:-44991689 | Msa0853250:CDS |
| GAGTACCTAGTGAGAGAGCT+AGG | 0.494212 | 5_4:+44991434 | None:intergenic |
| GAGCTTATCCTGGTTATGCC+GGG | 0.496550 | 5_4:-44990952 | Msa0853250:CDS |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_4:-44990962 | Msa0853250:CDS |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_4:-44995234 | Msa0853250:CDS |
| ATCTCAATACATACCCCAAA+TGG | 0.500069 | 5_4:-44991779 | Msa0853250:CDS |
| ATTTCTTGTTGCTGGTGAGT+TGG | 0.501065 | 5_4:+44991464 | None:intergenic |
| GTTATGATTGCTCTTTGAGA+TGG | 0.502947 | 5_4:+44995852 | None:intergenic |
| ATTACCAAAAGGATTGGTTA+CGG | 0.504727 | 5_4:+44995317 | None:intergenic |
| GAGTACCTAGCGAGAGAGCT+AGG | 0.504789 | 5_4:+44995706 | None:intergenic |
| AACTTCAGCTTGTTCTACAT+TGG | 0.507055 | 5_4:-44990837 | Msa0853250:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_4:-44991134 | Msa0853250:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_4:-44995406 | Msa0853250:CDS |
| GGTGCTAGCTACAACGCTAA+TGG | 0.508260 | 5_4:-44990905 | Msa0853250:CDS |
| GTGGAAATGTTGTGAGGTGA+TGG | 0.511344 | 5_4:+44991828 | None:intergenic |
| TGAAAATACCCATTACCAAA+GGG | 0.514087 | 5_4:+44991034 | None:intergenic |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5_4:+44991118 | None:intergenic |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5_4:+44995390 | None:intergenic |
| AAAAGGGCCCCGGCATAACC+AGG | 0.522506 | 5_4:+44990944 | None:intergenic |
| GGTTATGAAATCAGTTATGA+TGG | 0.523193 | 5_4:+44991567 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_4:-44995224 | Msa0853250:CDS |
| AAGTTTGCGTACATTTGGGT+TGG | 0.527568 | 5_4:-44995486 | Msa0853250:CDS |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_4:-44995177 | Msa0853250:CDS |
| TTATGCTGGGGACCTTCTAG+TGG | 0.532370 | 5_4:-44995211 | Msa0853250:CDS |
| GGAACCGTAACCAATCCCTT+TGG | 0.536769 | 5_4:-44991049 | Msa0853250:CDS |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.545259 | 5_4:-44991643 | Msa0853250:CDS |
| AATTCTGAAACTCAATGTGC+TGG | 0.549654 | 5_4:-44991190 | Msa0853250:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5_4:-44991098 | Msa0853250:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5_4:-44995370 | Msa0853250:CDS |
| AAGTTCGCATACATTTGGGT+TGG | 0.555170 | 5_4:-44991214 | Msa0853250:CDS |
| AGGTGATGGAAATGTAAGAT+GGG | 0.556919 | 5_4:+44991842 | None:intergenic |
| AGTATGAAGTAAAAGGAATG+TGG | 0.559358 | 5_4:+44991809 | None:intergenic |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_4:-44995164 | Msa0853250:CDS |
| TTCAGTTGATTTCCACCACA+TGG | 0.564236 | 5_4:+44991495 | None:intergenic |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_4:-44991274 | Msa0853250:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_4:-44995546 | Msa0853250:CDS |
| TTTGTCCACCAAAAGGGCCC+CGG | 0.565779 | 5_4:+44990934 | None:intergenic |
| TTGAAAATACCCATTACCAA+AGG | 0.567082 | 5_4:+44991033 | None:intergenic |
| ACGCTAATGGTGATAATGGA+AGG | 0.567526 | 5_4:-44990892 | Msa0853250:CDS |
| GTTAACCTAGCTCTCTCGCT+AGG | 0.568037 | 5_4:-44995711 | Msa0853250:CDS |
| GTTAACCTAGCTCTCTCACT+AGG | 0.568709 | 5_4:-44991439 | Msa0853250:CDS |
| AGAAGGTCCCCAGCATAACC+AGG | 0.571861 | 5_4:+44995216 | None:intergenic |
| AACCATCAGTTGCCATGTGG+TGG | 0.572940 | 5_4:-44991507 | Msa0853250:CDS |
| TACCAATGTAGAACAAGCTG+AGG | 0.574594 | 5_4:+44995107 | None:intergenic |
| GAGGTGATGGAAATGTAAGA+TGG | 0.574615 | 5_4:+44991841 | None:intergenic |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_4:+44995777 | None:intergenic |
| TTCCACCACATGGCAACTGA+TGG | 0.590647 | 5_4:+44991505 | None:intergenic |
| GGCAACTGATGGTTGTGTTG+TGG | 0.592082 | 5_4:+44991516 | None:intergenic |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_4:-44995462 | Msa0853250:CDS |
| AACTTAAAAGATGCCATTTG+GGG | 0.601368 | 5_4:+44991766 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_4:-44995779 | Msa0853250:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_4:+44995418 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_4:-44991658 | Msa0853250:CDS |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_4:-44995930 | Msa0853250:CDS |
| AGCTTATCCTGGTTATGCCG+GGG | 0.625238 | 5_4:-44990951 | Msa0853250:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.625761 | 5_4:+44995529 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5_4:-44991113 | Msa0853250:CDS |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5_4:-44995385 | Msa0853250:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5_4:-44995223 | Msa0853250:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.635354 | 5_4:+44991257 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_4:+44990995 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_4:+44995267 | None:intergenic |
| TTTGTGGACCATAAACTGGT+TGG | 0.650491 | 5_4:+44991146 | None:intergenic |
| TTCGGTTGATTTCCACCACG+TGG | 0.652662 | 5_4:+44995767 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.655555 | 5_4:+44995530 | None:intergenic |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5_4:-44991112 | Msa0853250:CDS |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5_4:-44995384 | Msa0853250:CDS |
| CTTCTAGTGGACAAAACAAG+TGG | 0.666644 | 5_4:-44995198 | Msa0853250:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.667076 | 5_4:+44995788 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.667974 | 5_4:+44991258 | None:intergenic |
| AGCTCCTTTAGCATAAACAC+CGG | 0.684494 | 5_4:+44990970 | None:intergenic |
| AGCTCCTTTAGCATAAACAC+CGG | 0.684494 | 5_4:+44995242 | None:intergenic |
| CACAACCATCAGTTGCCATG+TGG | 0.702852 | 5_4:-44991510 | Msa0853250:CDS |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_4:-44995782 | Msa0853250:CDS |
| AATGTGCTGGTCAATGCGCG+TGG | 0.715277 | 5_4:-44995449 | Msa0853250:CDS |
| AATGTGCTGGTCAATGCGCG+TGG | 0.716124 | 5_4:-44991177 | Msa0853250:CDS |
| AGGAATGTGGAAATGTTGTG+AGG | 0.739718 | 5_4:+44991822 | None:intergenic |
| GGTGATGGAAATGTAAGATG+GGG | 0.756010 | 5_4:+44991843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAATAATGATGTTT+TGG | - | chr5_4:44992282-44992301 | Msa0853250:intron | 10.0% |
| !!! | AACAGATTTTTATAATTTTA+GGG | + | chr5_4:44994417-44994436 | None:intergenic | 10.0% |
| !!! | TAACAGATTTTTATAATTTT+AGG | + | chr5_4:44994418-44994437 | None:intergenic | 10.0% |
| !! | ATTCTATAATTAATATATGC+GGG | + | chr5_4:44992082-44992101 | None:intergenic | 15.0% |
| !! | GATTCTATAATTAATATATG+CGG | + | chr5_4:44992083-44992102 | None:intergenic | 15.0% |
| !! | AAAATTAATACCAACATATT+TGG | + | chr5_4:44992174-44992193 | None:intergenic | 15.0% |
| !! | AATTATACATTTGAATTGTT+GGG | + | chr5_4:44993281-44993300 | None:intergenic | 15.0% |
| !! | AAATTATACATTTGAATTGT+TGG | + | chr5_4:44993282-44993301 | None:intergenic | 15.0% |
| !! | ATATTGAGCTAATATTAAAT+TGG | - | chr5_4:44993441-44993460 | Msa0853250:intron | 15.0% |
| !! | ATTATCAGTAATATCTATAT+TGG | - | chr5_4:44993822-44993841 | Msa0853250:intron | 15.0% |
| !! | AATTATACATAATTATCTGA+AGG | - | chr5_4:44994184-44994203 | Msa0853250:intron | 15.0% |
| !! | AATACAAAGAATGATATGAA+GGG | + | chr5_4:44991925-44991944 | None:intergenic | 20.0% |
| !! | TAATACAAAGAATGATATGA+AGG | + | chr5_4:44991926-44991945 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTCAAGTAGTT+TGG | - | chr5_4:44991994-44992013 | Msa0853250:intron | 20.0% |
| !! | TTCTATAATTAATATATGCG+GGG | + | chr5_4:44992081-44992100 | None:intergenic | 20.0% |
| !!! | GGTTTCTTAATTTTAAAACT+TGG | - | chr5_4:44992303-44992322 | Msa0853250:intron | 20.0% |
| !!! | TTTGTTTCTCTAATGTATTT+TGG | - | chr5_4:44992329-44992348 | Msa0853250:intron | 20.0% |
| !!! | TCTAATGTATTTTGGAATTT+CGG | - | chr5_4:44992337-44992356 | Msa0853250:intron | 20.0% |
| !! | AAAAGTAGGAATCAATAATT+GGG | - | chr5_4:44992672-44992691 | Msa0853250:intron | 20.0% |
| !! | AATTAAAAGAGATTCAATAG+AGG | + | chr5_4:44992782-44992801 | None:intergenic | 20.0% |
| !!! | TTAATTTTTTTTTGTGTGTG+TGG | - | chr5_4:44992796-44992815 | Msa0853250:intron | 20.0% |
| !! | GAGTTTAACATTACTATATT+AGG | - | chr5_4:44992900-44992919 | Msa0853250:intron | 20.0% |
| !! | ACATTACTATATTAGGTAAT+TGG | - | chr5_4:44992907-44992926 | Msa0853250:intron | 20.0% |
| !!! | AGTTATTGTTTCTATTACAA+AGG | - | chr5_4:44993127-44993146 | Msa0853250:intron | 20.0% |
| !!! | AATATTTGATTTGTATCGAT+TGG | - | chr5_4:44993153-44993172 | Msa0853250:intron | 20.0% |
| !! | AATATTAGCTCAATATGTAT+TGG | + | chr5_4:44993437-44993456 | None:intergenic | 20.0% |
| !! | TCAATAAAGATTTGTCATTA+GGG | + | chr5_4:44993500-44993519 | None:intergenic | 20.0% |
| !! | ATCAATAAAGATTTGTCATT+AGG | + | chr5_4:44993501-44993520 | None:intergenic | 20.0% |
| !! | AATGACAAATCTTTATTGAT+TGG | - | chr5_4:44993501-44993520 | Msa0853250:intron | 20.0% |
| !! | AAAGATTATAGACTATTATG+TGG | - | chr5_4:44993736-44993755 | Msa0853250:intron | 20.0% |
| !! | AAGATTATAGACTATTATGT+GGG | - | chr5_4:44993737-44993756 | Msa0853250:intron | 20.0% |
| !!! | CTTTTTATATAGTATTCTGA+TGG | + | chr5_4:44993857-44993876 | None:intergenic | 20.0% |
| !! | ACTTTATAATCATTCTGTTA+CGG | + | chr5_4:44993999-44994018 | None:intergenic | 20.0% |
| !! | TAACAGAATGATTATAAAGT+CGG | - | chr5_4:44993999-44994018 | Msa0853250:intron | 20.0% |
| !! | TCAATTTAATATTGAGTCTT+TGG | + | chr5_4:44994110-44994129 | None:intergenic | 20.0% |
| !!! | ATTTTTATCTTCACTAGTTT+TGG | + | chr5_4:44994336-44994355 | None:intergenic | 20.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | - | chr5_4:44990931-44990950 | Msa0853250:CDS | 25.0% |
| !!! | AAATTTTACCGGTTAAAAGA+GGG | + | chr5_4:44990957-44990976 | None:intergenic | 25.0% |
| ! | AAATTTCCGTAAACATCATT+TGG | - | chr5_4:44990971-44990990 | Msa0853250:CDS | 25.0% |
| !!! | AGTGAGTTGATAGTATTTTT+CGG | + | chr5_4:44991115-44991134 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | + | chr5_4:44991558-44991577 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | - | chr5_4:44991558-44991577 | Msa0853250:CDS | 25.0% |
| !!! | CATTTTAAAATGGATAGAAG+TGG | - | chr5_4:44992032-44992051 | Msa0853250:intron | 25.0% |
| ! | TTAAAAGCAACCAAATATGT+TGG | - | chr5_4:44992161-44992180 | Msa0853250:intron | 25.0% |
| ! | TAGAGAAGTCAAATTTGATT+TGG | + | chr5_4:44992202-44992221 | None:intergenic | 25.0% |
| !!! | GTAGACTTTTATTTATGTCT+AGG | + | chr5_4:44992479-44992498 | None:intergenic | 25.0% |
| ! | AGACATAAATAAAAGTCTAC+CGG | - | chr5_4:44992479-44992498 | Msa0853250:intron | 25.0% |
| ! | GAAAAGTAGGAATCAATAAT+TGG | - | chr5_4:44992671-44992690 | Msa0853250:intron | 25.0% |
| ! | ATTTCTTTGTGAAATGAGTA+TGG | - | chr5_4:44992861-44992880 | Msa0853250:intron | 25.0% |
| !! | TTTTGATAGAAGATTGAAAG+TGG | - | chr5_4:44993317-44993336 | Msa0853250:intron | 25.0% |
| ! | GAAGAATAATTTACCAACAT+AGG | - | chr5_4:44993349-44993368 | Msa0853250:intron | 25.0% |
| ! | TAATGTACTTATGTTTAACG+AGG | + | chr5_4:44993669-44993688 | None:intergenic | 25.0% |
| ! | TTTATATAGTATTCTGATGG+CGG | + | chr5_4:44993854-44993873 | None:intergenic | 25.0% |
| ! | ATTATTCTCATAGTGATAAG+TGG | - | chr5_4:44993894-44993913 | Msa0853250:intron | 25.0% |
| ! | TAGTTGAAGTCAAATTATGT+AGG | + | chr5_4:44994930-44994949 | None:intergenic | 25.0% |
| ! | AATTAACGTGTAAAACAGAA+AGG | + | chr5_4:44994962-44994981 | None:intergenic | 25.0% |
| ! | AGAACAAAGTATGAAGTAAA+AGG | + | chr5_4:44995062-44995081 | None:intergenic | 25.0% |
| !! | TAACTTAAAAGATGCCATTT+GGG | + | chr5_4:44995099-44995118 | None:intergenic | 25.0% |
| ! | TTAACTTAAAAGATGCCATT+TGG | + | chr5_4:44995100-44995119 | None:intergenic | 25.0% |
| ! | TAGTGAAATTGTGAGAAAAA+GGG | + | chr5_4:44995135-44995154 | None:intergenic | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | + | chr5_4:44990927-44990946 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | - | chr5_4:44990931-44990950 | Msa0853250:CDS | 25.0% |
| !! | GAAATTTTACCGGTTAAAAG+AGG | + | chr5_4:44990958-44990977 | None:intergenic | 30.0% |
| ! | GATGTTTACGGAAATTTTAC+CGG | + | chr5_4:44990968-44990987 | None:intergenic | 30.0% |
| TCCATACCAAATGATGTTTA+CGG | + | chr5_4:44990980-44990999 | None:intergenic | 30.0% | |
| !!! | TTGATGGATTTTGTTCAAGT+AGG | - | chr5_4:44991301-44991320 | Msa0853250:CDS | 30.0% |
| AAACAAGTTTGCGTACATTT+GGG | - | chr5_4:44991371-44991390 | Msa0853250:CDS | 30.0% | |
| !! | ATTACCAAAAGGATTGGTTA+CGG | + | chr5_4:44991547-44991566 | None:intergenic | 30.0% |
| ATATCCATTACCAAAAGGAT+TGG | + | chr5_4:44991553-44991572 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | - | chr5_4:44991693-44991712 | Msa0853250:CDS | 30.0% | |
| !! | AGAAAGAGTGTTTAGTTGTT+AGG | - | chr5_4:44991780-44991799 | Msa0853250:CDS | 30.0% |
| !!! | TTTTTTGTCAAGTAGTTTGG+TGG | - | chr5_4:44991997-44992016 | Msa0853250:intron | 30.0% |
| !! | AGAGCTCAGACATTTTAAAA+TGG | - | chr5_4:44992022-44992041 | Msa0853250:intron | 30.0% |
| TAATTAATATATGCGGGGTT+GGG | + | chr5_4:44992076-44992095 | None:intergenic | 30.0% | |
| ATAATTAATATATGCGGGGT+TGG | + | chr5_4:44992077-44992096 | None:intergenic | 30.0% | |
| !!! | CATATTTGGTTGCTTTTAAC+AGG | + | chr5_4:44992160-44992179 | None:intergenic | 30.0% |
| ATAAATAAAAGTCTACCGGT+TGG | - | chr5_4:44992483-44992502 | Msa0853250:intron | 30.0% | |
| AACTCTACAGTTCATAACTA+AGG | + | chr5_4:44992544-44992563 | None:intergenic | 30.0% | |
| TTAGTTATGAACTGTAGAGT+TGG | - | chr5_4:44992543-44992562 | Msa0853250:intron | 30.0% | |
| TAGTTATGAACTGTAGAGTT+GGG | - | chr5_4:44992544-44992563 | Msa0853250:intron | 30.0% | |
| TTAAGTATAGACTGTCAGAT+TGG | - | chr5_4:44992649-44992668 | Msa0853250:intron | 30.0% | |
| AGGATCATAAGAAAGTTTCT+TGG | - | chr5_4:44992823-44992842 | Msa0853250:intron | 30.0% | |
| GGATCATAAGAAAGTTTCTT+GGG | - | chr5_4:44992824-44992843 | Msa0853250:intron | 30.0% | |
| CTATATTAGGTAATTGGTGT+TGG | - | chr5_4:44992913-44992932 | Msa0853250:intron | 30.0% | |
| ! | AAAATTTGTTCCTTGCATTG+TGG | - | chr5_4:44993192-44993211 | Msa0853250:intron | 30.0% |
| !!! | TGGGAAAATCTAGTTTTCAT+TGG | + | chr5_4:44993262-44993281 | None:intergenic | 30.0% |
| !! | TAAGGAACTTTTTCCTATGT+TGG | + | chr5_4:44993365-44993384 | None:intergenic | 30.0% |
| ATATACTCTACTGGTAGATA+AGG | + | chr5_4:44993383-44993402 | None:intergenic | 30.0% | |
| !!! | AAATTGGCTTTTAATGCTAG+TGG | - | chr5_4:44993457-44993476 | Msa0853250:intron | 30.0% |
| !!! | AATTGGCTTTTAATGCTAGT+GGG | - | chr5_4:44993458-44993477 | Msa0853250:intron | 30.0% |
| TTATATAGTATTCTGATGGC+GGG | + | chr5_4:44993853-44993872 | None:intergenic | 30.0% | |
| ATGATTATAAAGTCGGTTGA+TGG | - | chr5_4:44994006-44994025 | Msa0853250:intron | 30.0% | |
| ATTTCTCCTGTTATGTATGT+AGG | + | chr5_4:44994085-44994104 | None:intergenic | 30.0% | |
| ! | TTTTGTCTATATGGAACACA+AGG | + | chr5_4:44994152-44994171 | None:intergenic | 30.0% |
| TTGTGTTCCATATAGACAAA+AGG | - | chr5_4:44994151-44994170 | Msa0853250:intron | 30.0% | |
| ! | CTTTTGTCCTTTTGTCTATA+TGG | + | chr5_4:44994161-44994180 | None:intergenic | 30.0% |
| CATATAGACAAAAGGACAAA+AGG | - | chr5_4:44994159-44994178 | Msa0853250:intron | 30.0% | |
| CAATGTTAAGATAGGTTTCA+AGG | + | chr5_4:44994236-44994255 | None:intergenic | 30.0% | |
| ATTGTTACGCTCTTCAATAA+TGG | - | chr5_4:44994698-44994717 | Msa0853250:intron | 30.0% | |
| ATCTATGAATTCATGCAAAC+TGG | - | chr5_4:44994844-44994863 | Msa0853250:intron | 30.0% | |
| ATAACAACGTGTAATCTAGT+TGG | - | chr5_4:44994876-44994895 | Msa0853250:intron | 30.0% | |
| TGAAGTCAAATTATGTAGGA+GGG | + | chr5_4:44994926-44994945 | None:intergenic | 30.0% | |
| TTGAAGTCAAATTATGTAGG+AGG | + | chr5_4:44994927-44994946 | None:intergenic | 30.0% | |
| AGTATGAAGTAAAAGGAATG+TGG | + | chr5_4:44995055-44995074 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGATGCCATTTG+GGG | + | chr5_4:44995098-44995117 | None:intergenic | 30.0% |
| GTAGTGAAATTGTGAGAAAA+AGG | + | chr5_4:44995136-44995155 | None:intergenic | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | - | chr5_4:44995243-44995262 | Msa0853250:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | + | chr5_4:44990987-44991006 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | + | chr5_4:44995297-44995316 | None:intergenic | 30.0% | |
| !!! | TGGTTTTTTGGAAGAAGAAA+GGG | + | chr5_4:44995321-44995340 | None:intergenic | 30.0% |
| !!! | TTGGTTTTTTGGAAGAAGAA+AGG | + | chr5_4:44995322-44995341 | None:intergenic | 30.0% |
| CTTGATGAGAATTACTCTTT+AGG | - | chr5_4:44995455-44995474 | Msa0853250:CDS | 30.0% | |
| TTGATGCGAGTTTAAGAATT+TGG | + | chr5_4:44995499-44995518 | None:intergenic | 30.0% | |
| ATTCTTAAACTCGCATCAAA+AGG | - | chr5_4:44995500-44995519 | Msa0853250:CDS | 30.0% | |
| !! | TTGATGGTTTTTGTTCAAGT+AGG | - | chr5_4:44995573-44995592 | Msa0853250:CDS | 30.0% |
| AAACAAGTTCGCATACATTT+GGG | - | chr5_4:44995643-44995662 | Msa0853250:CDS | 30.0% | |
| TGAAAATACCCATTACCAAA+GGG | + | chr5_4:44995830-44995849 | None:intergenic | 30.0% | |
| TTGAAAATACCCATTACCAA+AGG | + | chr5_4:44995831-44995850 | None:intergenic | 30.0% | |
| !!! | TTTGGTAATGGGTATTTTCA+AGG | - | chr5_4:44995830-44995849 | Msa0853250:CDS | 30.0% |
| TCCGTAAACATCATTTGGTA+TGG | - | chr5_4:44990976-44990995 | Msa0853250:CDS | 35.0% | |
| ! | GTTATGATTGCTCTTTGAGA+TGG | + | chr5_4:44991012-44991031 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGAGAAGAAAGTG+AGG | + | chr5_4:44991046-44991065 | None:intergenic | 35.0% |
| !!! | GATGTGGTTGTTGGTTTTTT+GGG | + | chr5_4:44991060-44991079 | None:intergenic | 35.0% |
| !!! | TGATGTGGTTGTTGGTTTTT+TGG | + | chr5_4:44991061-44991080 | None:intergenic | 35.0% |
| CTTGACGAGAATTACTCTTT+AGG | - | chr5_4:44991183-44991202 | Msa0853250:CDS | 35.0% | |
| GAAACAAGTTTGCGTACATT+TGG | - | chr5_4:44991370-44991389 | Msa0853250:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+AGG | + | chr5_4:44991438-44991457 | None:intergenic | 35.0% |
| ! | CCTTTTCACCAACCAATTTA+TGG | - | chr5_4:44991435-44991454 | Msa0853250:CDS | 35.0% |
| TTTGTGGACCATAAATTGGT+TGG | + | chr5_4:44991446-44991465 | None:intergenic | 35.0% | |
| ! | GTAACCAATCCTTTTGGTAA+TGG | - | chr5_4:44991546-44991565 | Msa0853250:CDS | 35.0% |
| AATGGATAGAAGTGGAATGT+CGG | - | chr5_4:44992040-44992059 | Msa0853250:intron | 35.0% | |
| GTGTGAATGTCAATGATTCT+TGG | - | chr5_4:44992505-44992524 | Msa0853250:intron | 35.0% | |
| TGGTAGCCCTTTATGTATTT+GGG | - | chr5_4:44992567-44992586 | Msa0853250:intron | 35.0% | |
| AGTAGGAATCAATAATTGGG+TGG | - | chr5_4:44992675-44992694 | Msa0853250:intron | 35.0% | |
| AAAGAAGGAAATGGGATACA+CGG | + | chr5_4:44992737-44992756 | None:intergenic | 35.0% | |
| ! | GGAGCATTAAAGAAGGAAAT+GGG | + | chr5_4:44992745-44992764 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTGTGTGGAATG+AGG | - | chr5_4:44992803-44992822 | Msa0853250:intron | 35.0% |
| TCTTTGTGAAATGAGTATGG+CGG | - | chr5_4:44992864-44992883 | Msa0853250:intron | 35.0% | |
| !! | TATTAGGTAATTGGTGTTGG+AGG | - | chr5_4:44992916-44992935 | Msa0853250:intron | 35.0% |
| !! | ATTAGGTAATTGGTGTTGGA+GGG | - | chr5_4:44992917-44992936 | Msa0853250:intron | 35.0% |
| !! | ACTATGGTTTAGAGTGTTGT+CGG | - | chr5_4:44992959-44992978 | Msa0853250:intron | 35.0% |
| TGTAACTACCCTCTTTCATA+CGG | + | chr5_4:44993007-44993026 | None:intergenic | 35.0% | |
| TATGAAAGAGGGTAGTTACA+AGG | - | chr5_4:44993007-44993026 | Msa0853250:intron | 35.0% | |
| AAGGATGAGGAGTTTCATAA+TGG | - | chr5_4:44993026-44993045 | Msa0853250:intron | 35.0% | |
| ! | TAAACCATTTTCACCTCAGA+CGG | + | chr5_4:44993230-44993249 | None:intergenic | 35.0% |
| CTATGAGCAATATACTCTAC+TGG | + | chr5_4:44993392-44993411 | None:intergenic | 35.0% | |
| TAGTCCAGCTTCAATATAAG+TGG | - | chr5_4:44993704-44993723 | Msa0853250:intron | 35.0% | |
| AGTCCAGCTTCAATATAAGT+GGG | - | chr5_4:44993705-44993724 | Msa0853250:intron | 35.0% | |
| TATCCCACTTATATTGAAGC+TGG | + | chr5_4:44993711-44993730 | None:intergenic | 35.0% | |
| TACTCCACAAATCATGCTAA+GGG | - | chr5_4:44994029-44994048 | Msa0853250:intron | 35.0% | |
| GAGCTCATCAATGTTAAGAT+AGG | + | chr5_4:44994244-44994263 | None:intergenic | 35.0% | |
| TGTTTACGTGTGTTGAGTTT+GGG | + | chr5_4:44994266-44994285 | None:intergenic | 35.0% | |
| ATGTTTACGTGTGTTGAGTT+TGG | + | chr5_4:44994267-44994286 | None:intergenic | 35.0% | |
| AACTGTGTATCCTTTGTACA+AGG | + | chr5_4:44994755-44994774 | None:intergenic | 35.0% | |
| ! | TAGGTGGAAGTGTATTGAAA+AGG | + | chr5_4:44994985-44995004 | None:intergenic | 35.0% |
| !! | AGGTGATGGAAATGTAAGAT+GGG | + | chr5_4:44995022-44995041 | None:intergenic | 35.0% |
| ATCTCAATACATACCCCAAA+TGG | - | chr5_4:44995082-44995101 | Msa0853250:intron | 35.0% | |
| AGCTAGAAAACTCACTGAAT+CGG | - | chr5_4:44990900-44990919 | Msa0853250:CDS | 35.0% | |
| ! | AGATTTTACCAGTGAGAAGA+GGG | + | chr5_4:44995229-44995248 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | - | chr5_4:44995248-44995267 | Msa0853250:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | + | chr5_4:44995288-44995307 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | + | chr5_4:44995289-44995308 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGAAGAAGAAAGGG+AGG | + | chr5_4:44995318-44995337 | None:intergenic | 35.0% |
| ! | GTTAACTGATTTCTTGTTGC+TGG | + | chr5_4:44991136-44991155 | None:intergenic | 35.0% |
| GAAACAAGTTCGCATACATT+TGG | - | chr5_4:44995642-44995661 | Msa0853250:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | - | chr5_4:44995671-44995690 | Msa0853250:CDS | 35.0% |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | - | chr5_4:44995791-44995810 | Msa0853250:CDS | 35.0% |
| !! | ATTACCAAAGGGATTGGTTA+CGG | + | chr5_4:44995819-44995838 | None:intergenic | 35.0% |
| ! | TAACCAATCCCTTTGGTAAT+GGG | - | chr5_4:44995819-44995838 | Msa0853250:CDS | 35.0% |
| !!! | ACTTGTTTTGTCCACCAAAA+GGG | + | chr5_4:44995936-44995955 | None:intergenic | 35.0% |
| TACAACGCTAATGGTGATAA+TGG | - | chr5_4:44995965-44995984 | Msa0853250:CDS | 35.0% | |
| ! | GTAGAACAAGCTGAAGTTTT+AGG | + | chr5_4:44996022-44996041 | None:intergenic | 35.0% |
| ! | AACTTCAGCTTGTTCTACAT+TGG | - | chr5_4:44996024-44996043 | Msa0853250:CDS | 35.0% |
| TTGACGCGAGTTTAACGATT+TGG | + | chr5_4:44991227-44991246 | None:intergenic | 40.0% | |
| ATCGTTAAACTCGCGTCAAA+AGG | - | chr5_4:44991228-44991247 | Msa0853250:CDS | 40.0% | |
| ! | GGATTTTGTTCAAGTAGGTG+TGG | - | chr5_4:44991306-44991325 | Msa0853250:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | + | chr5_4:44991334-44991353 | None:intergenic | 40.0% | |
| AAGTTTGCGTACATTTGGGT+TGG | - | chr5_4:44991375-44991394 | Msa0853250:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | - | chr5_4:44991399-44991418 | Msa0853250:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | + | chr5_4:44991450-44991469 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | + | chr5_4:44991474-44991493 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | - | chr5_4:44991477-44991496 | Msa0853250:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | + | chr5_4:44991486-44991505 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | - | chr5_4:44991486-44991505 | Msa0853250:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | - | chr5_4:44991519-44991538 | Msa0853250:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | - | chr5_4:44991615-44991634 | Msa0853250:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | + | chr5_4:44991622-44991641 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | - | chr5_4:44991627-44991646 | Msa0853250:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACTAGA+AGG | + | chr5_4:44991665-44991684 | None:intergenic | 40.0% |
| ! | CTTCTAGTGGACAAAACAAG+TGG | - | chr5_4:44991663-44991682 | Msa0853250:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | - | chr5_4:44991697-44991716 | Msa0853250:CDS | 40.0% |
| ! | GTAGAACAAGCTGAGGTTTT+AGG | + | chr5_4:44991750-44991769 | None:intergenic | 40.0% |
| ! | AACCTCAGCTTGTTCTACAT+TGG | - | chr5_4:44991752-44991771 | Msa0853250:CDS | 40.0% |
| TACCAATGTAGAACAAGCTG+AGG | + | chr5_4:44991757-44991776 | None:intergenic | 40.0% | |
| TCATTGACATTCACACCAAC+CGG | + | chr5_4:44992501-44992520 | None:intergenic | 40.0% | |
| TTATGAACTGTAGAGTTGGG+TGG | - | chr5_4:44992547-44992566 | Msa0853250:intron | 40.0% | |
| GTGGTAGCCCTTTATGTATT+TGG | - | chr5_4:44992566-44992585 | Msa0853250:intron | 40.0% | |
| GGGAGACCCAAATACATAAA+GGG | + | chr5_4:44992576-44992595 | None:intergenic | 40.0% | |
| TGGGAGACCCAAATACATAA+AGG | + | chr5_4:44992577-44992596 | None:intergenic | 40.0% | |
| ATGTATTTGGGTCTCCCAAT+AGG | - | chr5_4:44992579-44992598 | Msa0853250:intron | 40.0% | |
| GACTGTCAGATTGGAAAAGT+AGG | - | chr5_4:44992658-44992677 | Msa0853250:intron | 40.0% | |
| TCATCTTGTTCTCCTTACGT+CGG | - | chr5_4:44992698-44992717 | Msa0853250:intron | 40.0% | |
| CAAATGACATAACCGACGTA+AGG | + | chr5_4:44992713-44992732 | None:intergenic | 40.0% | |
| AAGAAGGAAATGGGATACAC+GGG | + | chr5_4:44992736-44992755 | None:intergenic | 40.0% | |
| !! | GGGAGCATTAAAGAAGGAAA+TGG | + | chr5_4:44992746-44992765 | None:intergenic | 40.0% |
| ATAGAGGAGATGATACCTGA+GGG | + | chr5_4:44992766-44992785 | None:intergenic | 40.0% | |
| AATAGAGGAGATGATACCTG+AGG | + | chr5_4:44992767-44992786 | None:intergenic | 40.0% | |
| TCAATGGAATCCACAATGCA+AGG | + | chr5_4:44993205-44993224 | None:intergenic | 40.0% | |
| ! | AAACCATTTTCACCTCAGAC+GGG | + | chr5_4:44993229-44993248 | None:intergenic | 40.0% |
| TAATGCTAGTGGGAGATTGT+TGG | - | chr5_4:44993468-44993487 | Msa0853250:intron | 40.0% | |
| ! | CAAAGTGGTTTCAGGTCAAA+GGG | + | chr5_4:44993929-44993948 | None:intergenic | 40.0% |
| ! | ACAAAGTGGTTTCAGGTCAA+AGG | + | chr5_4:44993930-44993949 | None:intergenic | 40.0% |
| AGTACTTGACTCCTACATCT+AGG | + | chr5_4:44993955-44993974 | None:intergenic | 40.0% | |
| GTACTCCACAAATCATGCTA+AGG | - | chr5_4:44994028-44994047 | Msa0853250:intron | 40.0% | |
| ATGTCCCTTAGCATGATTTG+TGG | + | chr5_4:44994036-44994055 | None:intergenic | 40.0% | |
| AGGAGGGACAAACTTCATTT+AGG | + | chr5_4:44994065-44994084 | None:intergenic | 40.0% | |
| CTCCTGTTATGTATGTAGGA+GGG | + | chr5_4:44994081-44994100 | None:intergenic | 40.0% | |
| TCTCCTGTTATGTATGTAGG+AGG | + | chr5_4:44994082-44994101 | None:intergenic | 40.0% | |
| ! | CGCTCTTCAATAATGGAGAA+TGG | - | chr5_4:44994705-44994724 | Msa0853250:intron | 40.0% |
| GAGAATGGACACAAAAGCTA+GGG | - | chr5_4:44994720-44994739 | Msa0853250:intron | 40.0% | |
| AGAATGGACACAAAAGCTAG+GGG | - | chr5_4:44994721-44994740 | Msa0853250:intron | 40.0% | |
| ! | AAATTATGTAGGAGGGTGTG+CGG | + | chr5_4:44994919-44994938 | None:intergenic | 40.0% |
| ATGGGGCTGTAGGTATATAT+AGG | + | chr5_4:44995004-44995023 | None:intergenic | 40.0% | |
| !! | GGTGATGGAAATGTAAGATG+GGG | + | chr5_4:44995021-44995040 | None:intergenic | 40.0% |
| !! | GAGGTGATGGAAATGTAAGA+TGG | + | chr5_4:44995023-44995042 | None:intergenic | 40.0% |
| AGGAATGTGGAAATGTTGTG+AGG | + | chr5_4:44995042-44995061 | None:intergenic | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | + | chr5_4:44995230-44995249 | None:intergenic | 40.0% |
| !!! | TGTTGTGGCTGTTGGTTTTT+TGG | + | chr5_4:44995333-44995352 | None:intergenic | 40.0% |
| ! | TTCAGTTGATTTCCACCACA+TGG | + | chr5_4:44995369-44995388 | None:intergenic | 40.0% |
| ATTTCTTGTTGCTGGTGAGT+TGG | + | chr5_4:44995400-44995419 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | - | chr5_4:44995578-44995597 | Msa0853250:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | + | chr5_4:44991334-44991353 | None:intergenic | 40.0% | |
| TCTTATGGTGCACGTGTAAA+TGG | - | chr5_4:44995614-44995633 | Msa0853250:CDS | 40.0% | |
| AAGTTCGCATACATTTGGGT+TGG | - | chr5_4:44995647-44995666 | Msa0853250:CDS | 40.0% | |
| !! | CCATAAACTGGTTGGTGAAA+TGG | + | chr5_4:44995710-44995729 | None:intergenic | 40.0% |
| CCATTTCACCAACCAGTTTA+TGG | - | chr5_4:44995707-44995726 | Msa0853250:CDS | 40.0% | |
| TTTGTGGACCATAAACTGGT+TGG | + | chr5_4:44995718-44995737 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | + | chr5_4:44991474-44991493 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | - | chr5_4:44991477-44991496 | Msa0853250:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | + | chr5_4:44991486-44991505 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | - | chr5_4:44991486-44991505 | Msa0853250:CDS | 40.0% | |
| GTAACCAATCCCTTTGGTAA+TGG | - | chr5_4:44995818-44995837 | Msa0853250:CDS | 40.0% | |
| ATACCCATTACCAAAGGGAT+TGG | + | chr5_4:44995825-44995844 | None:intergenic | 40.0% | |
| ! | TGTACCGGTGTTTATGCTAA+AGG | - | chr5_4:44991615-44991634 | Msa0853250:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | + | chr5_4:44991622-44991641 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | - | chr5_4:44991627-44991646 | Msa0853250:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | + | chr5_4:44995937-44995956 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | - | chr5_4:44995935-44995954 | Msa0853250:CDS | 40.0% |
| !! | ACGCTAATGGTGATAATGGA+AGG | - | chr5_4:44995969-44995988 | Msa0853250:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | + | chr5_4:44996007-44996026 | None:intergenic | 40.0% |
| ! | CACAAAGGCCCTCTTTTAAC+CGG | - | chr5_4:44990946-44990965 | Msa0853250:CDS | 45.0% |
| GATGGTTGTGATGTGGTTGT+TGG | + | chr5_4:44991069-44991088 | None:intergenic | 45.0% | |
| TGCTGTTAGGACAACGTTGA+TGG | + | chr5_4:44991268-44991287 | None:intergenic | 45.0% | |
| CTAACACATCAGCTGCTGTT+AGG | + | chr5_4:44991281-44991300 | None:intergenic | 45.0% | |
| GCAGCTGATGTGTTAGTTGA+TGG | - | chr5_4:44991285-44991304 | Msa0853250:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | - | chr5_4:44991327-44991346 | Msa0853250:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | + | chr5_4:44991335-44991354 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | - | chr5_4:44991342-44991361 | Msa0853250:CDS | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | - | chr5_4:44991476-44991495 | Msa0853250:CDS | 45.0% | |
| ! | GGAACCGTAACCAATCCTTT+TGG | - | chr5_4:44991540-44991559 | Msa0853250:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | - | chr5_4:44991578-44991597 | Msa0853250:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | + | chr5_4:44991585-44991604 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | - | chr5_4:44991637-44991656 | Msa0853250:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | - | chr5_4:44991638-44991657 | Msa0853250:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | - | chr5_4:44991684-44991703 | Msa0853250:CDS | 45.0% | |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | + | chr5_4:44991735-44991754 | None:intergenic | 45.0% |
| TATTTGGGTCTCCCAATAGG+TGG | - | chr5_4:44992582-44992601 | Msa0853250:intron | 45.0% | |
| !! | ACGCGCGGCGTTTAAAATTT+TGG | - | chr5_4:44992607-44992626 | Msa0853250:intron | 45.0% |
| !! | CGCGCGGCGTTTAAAATTTT+GGG | - | chr5_4:44992608-44992627 | Msa0853250:intron | 45.0% |
| TCCTTCTTTAATGCTCCCTC+AGG | - | chr5_4:44992748-44992767 | Msa0853250:intron | 45.0% | |
| !! | ACCTGAGGGAGCATTAAAGA+AGG | + | chr5_4:44992752-44992771 | None:intergenic | 45.0% |
| GAAATGAGTATGGCGGTTTG+TGG | - | chr5_4:44992871-44992890 | Msa0853250:intron | 45.0% | |
| !! | TAATTGGTGTTGGAGGGTAG+TGG | - | chr5_4:44992923-44992942 | Msa0853250:intron | 45.0% |
| TCGGCAAGGTATGGTGTAAA+GGG | - | chr5_4:44992978-44992997 | Msa0853250:intron | 45.0% | |
| AGAGGGTAGTTACAAGGATG+AGG | - | chr5_4:44993013-44993032 | Msa0853250:intron | 45.0% | |
| CACATCTCACGTATCATCGA+TGG | - | chr5_4:44993772-44993791 | Msa0853250:intron | 45.0% | |
| CTAGGCTACAAAGTGGTTTC+AGG | + | chr5_4:44993937-44993956 | None:intergenic | 45.0% | |
| CCTACATCTAGGCTACAAAG+TGG | + | chr5_4:44993944-44993963 | None:intergenic | 45.0% | |
| CCACTTTGTAGCCTAGATGT+AGG | - | chr5_4:44993941-44993960 | Msa0853250:intron | 45.0% | |
| ATCATGCTAAGGGACATGAG+TGG | - | chr5_4:44994039-44994058 | Msa0853250:intron | 45.0% | |
| GTCCCTCCTACATACATAAC+AGG | - | chr5_4:44994076-44994095 | Msa0853250:intron | 45.0% | |
| GGAGAATGGACACAAAAGCT+AGG | - | chr5_4:44994719-44994738 | Msa0853250:intron | 45.0% | |
| GGGCTGTAGGTATATATAGG+TGG | + | chr5_4:44995001-44995020 | None:intergenic | 45.0% | |
| GAAATGTAAGATGGGGCTGT+AGG | + | chr5_4:44995014-44995033 | None:intergenic | 45.0% | |
| GTGGAAATGTTGTGAGGTGA+TGG | + | chr5_4:44995036-44995055 | None:intergenic | 45.0% | |
| ! | GTTAACCTAGCTCTCTCACT+AGG | - | chr5_4:44995422-44995441 | Msa0853250:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | + | chr5_4:44995540-44995559 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | + | chr5_4:44995553-44995572 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+TGG | - | chr5_4:44995557-44995576 | Msa0853250:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | - | chr5_4:44991327-44991346 | Msa0853250:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | + | chr5_4:44991335-44991354 | None:intergenic | 45.0% | |
| GCACTTTGTGGACCATAAAC+TGG | + | chr5_4:44995722-44995741 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | - | chr5_4:44991476-44991495 | Msa0853250:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | - | chr5_4:44991578-44991597 | Msa0853250:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | + | chr5_4:44991585-44991604 | None:intergenic | 45.0% |
| CGGTTAAAAGAGGGCCTTTG+TGG | + | chr5_4:44990948-44990967 | None:intergenic | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | + | chr5_4:44991076-44991095 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | + | chr5_4:44991097-44991116 | None:intergenic | 50.0% |
| ! | GTTAACCTAGCTCTCTCGCT+AGG | - | chr5_4:44991150-44991169 | Msa0853250:CDS | 50.0% |
| TCAAGTAGGTGTGGAACCCA+TGG | - | chr5_4:44991315-44991334 | Msa0853250:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | - | chr5_4:44991455-44991474 | Msa0853250:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | + | chr5_4:44991462-44991481 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | - | chr5_4:44991491-44991510 | Msa0853250:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | - | chr5_4:44991590-44991609 | Msa0853250:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | - | chr5_4:44991636-44991655 | Msa0853250:CDS | 50.0% | |
| TTATGCTGGGGACCTTCTAG+TGG | - | chr5_4:44991650-44991669 | Msa0853250:CDS | 50.0% | |
| GGATAGAAGTGGAATGTCGG+AGG | - | chr5_4:44992043-44992062 | Msa0853250:intron | 50.0% | |
| ! | TGGTGGATCAAGGAGGACTA+TGG | - | chr5_4:44992943-44992962 | Msa0853250:intron | 50.0% |
| !! | GGTTTAGAGTGTTGTCGGCA+AGG | - | chr5_4:44992964-44992983 | Msa0853250:intron | 50.0% |
| !! | AGAGTGTTGTCGGCAAGGTA+TGG | - | chr5_4:44992969-44992988 | Msa0853250:intron | 50.0% |
| GTCGGCAAGGTATGGTGTAA+AGG | - | chr5_4:44992977-44992996 | Msa0853250:intron | 50.0% | |
| CGGCAAGGTATGGTGTAAAG+GGG | - | chr5_4:44992979-44992998 | Msa0853250:intron | 50.0% | |
| GGCAAGGTATGGTGTAAAGG+GGG | - | chr5_4:44992980-44992999 | Msa0853250:intron | 50.0% | |
| GCAAGGTATGGTGTAAAGGG+GGG | - | chr5_4:44992981-44993000 | Msa0853250:intron | 50.0% | |
| GATTCCATTGATCCCGTCTG+AGG | - | chr5_4:44993214-44993233 | Msa0853250:intron | 50.0% | |
| TTCACCTCAGACGGGATCAA+TGG | + | chr5_4:44993221-44993240 | None:intergenic | 50.0% | |
| ! | GATCCCGTCTGAGGTGAAAA+TGG | - | chr5_4:44993223-44993242 | Msa0853250:intron | 50.0% |
| GGCATGCATGCCTTGTACAA+AGG | - | chr5_4:44994742-44994761 | Msa0853250:intron | 50.0% | |
| GATGGTTGTGTTGTGGCTGT+TGG | + | chr5_4:44995341-44995360 | None:intergenic | 50.0% | |
| GGCAACTGATGGTTGTGTTG+TGG | + | chr5_4:44995348-44995367 | None:intergenic | 50.0% | |
| CACAACCATCAGTTGCCATG+TGG | - | chr5_4:44995351-44995370 | Msa0853250:CDS | 50.0% | |
| AACCATCAGTTGCCATGTGG+TGG | - | chr5_4:44995354-44995373 | Msa0853250:CDS | 50.0% | |
| TTCCACCACATGGCAACTGA+TGG | + | chr5_4:44995359-44995378 | None:intergenic | 50.0% | |
| GAGTACCTAGTGAGAGAGCT+AGG | + | chr5_4:44995430-44995449 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | - | chr5_4:44991315-44991334 | Msa0853250:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | - | chr5_4:44991455-44991474 | Msa0853250:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | + | chr5_4:44991462-44991481 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | - | chr5_4:44991491-44991510 | Msa0853250:CDS | 50.0% | |
| GGAACCGTAACCAATCCCTT+TGG | - | chr5_4:44995812-44995831 | Msa0853250:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | - | chr5_4:44991590-44991609 | Msa0853250:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+CGG | - | chr5_4:44991636-44991655 | Msa0853250:CDS | 50.0% | |
| GAGCTTATCCTGGTTATGCC+GGG | - | chr5_4:44995909-44995928 | Msa0853250:CDS | 50.0% | |
| AGCTTATCCTGGTTATGCCG+GGG | - | chr5_4:44995910-44995929 | Msa0853250:CDS | 50.0% | |
| GGTGCTAGCTACAACGCTAA+TGG | - | chr5_4:44995956-44995975 | Msa0853250:CDS | 50.0% | |
| CACAACCATCAGTTGCCACG+TGG | - | chr5_4:44991079-44991098 | Msa0853250:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | - | chr5_4:44991082-44991101 | Msa0853250:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | + | chr5_4:44991087-44991106 | None:intergenic | 55.0% | |
| GAGTACCTAGCGAGAGAGCT+AGG | + | chr5_4:44991158-44991177 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | - | chr5_4:44991412-44991431 | Msa0853250:CDS | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | + | chr5_4:44991597-44991616 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | - | chr5_4:44991600-44991619 | Msa0853250:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | + | chr5_4:44991648-44991667 | None:intergenic | 55.0% | |
| !! | TTGGTGTTGGAGGGTAGTGG+TGG | - | chr5_4:44992926-44992945 | Msa0853250:intron | 55.0% |
| !! | TGGAGGGTAGTGGTGGATCA+AGG | - | chr5_4:44992933-44992952 | Msa0853250:intron | 55.0% |
| !! | AGGGTAGTGGTGGATCAAGG+AGG | - | chr5_4:44992936-44992955 | Msa0853250:intron | 55.0% |
| AAAGGGGGGCCGTATGAAAG+AGG | - | chr5_4:44992995-44993014 | Msa0853250:intron | 55.0% | |
| AAGGGGGGCCGTATGAAAGA+GGG | - | chr5_4:44992996-44993015 | Msa0853250:intron | 55.0% | |
| CAGTGAGAAGAGGGCCTTTG+TGG | + | chr5_4:44995220-44995239 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | - | chr5_4:44995218-44995237 | Msa0853250:CDS | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | - | chr5_4:44991412-44991431 | Msa0853250:CDS | 55.0% |
| CAAGCCGAAGCAGCTTCCAA+AGG | + | chr5_4:44991597-44991616 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | - | chr5_4:44991600-44991619 | Msa0853250:CDS | 55.0% |
| TTTGTCCACCAAAAGGGCCC+CGG | + | chr5_4:44995930-44995949 | None:intergenic | 55.0% | |
| ! | TCCCAATAGGTGGTGACGCG+CGG | - | chr5_4:44992592-44992611 | Msa0853250:intron | 60.0% |
| AAAAGGGCCCCGGCATAACC+AGG | + | chr5_4:44995920-44995939 | None:intergenic | 60.0% | |
| ! | TGGTTATGCCGGGGCCCTTT+TGG | - | chr5_4:44995919-44995938 | Msa0853250:CDS | 60.0% |
| ! | TTATGCCGGGGCCCTTTTGG+TGG | - | chr5_4:44995922-44995941 | Msa0853250:CDS | 60.0% |
| GCCGCGCGTCACCACCTATT+GGG | + | chr5_4:44992596-44992615 | None:intergenic | 65.0% | |
| AGGGTGTGCGGAGTGAGTGG+TGG | + | chr5_4:44994907-44994926 | None:intergenic | 65.0% | |
| ! | AGGAGGGTGTGCGGAGTGAG+TGG | + | chr5_4:44994910-44994929 | None:intergenic | 65.0% |
| CGCCGCGCGTCACCACCTAT+TGG | + | chr5_4:44992597-44992616 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 44990832 | 44996051 | 44990832 | ID=Msa0853250;Name=Msa0853250 |
| chr5_4 | mRNA | 44990832 | 44996051 | 44990832 | ID=Msa0853250-mRNA-1;Parent=Msa0853250;Name=Msa0853250-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0|2|0|654 |
| chr5_4 | exon | 44995121 | 44996051 | 44995121 | ID=Msa0853250-mRNA-1:exon:14207;Parent=Msa0853250-mRNA-1 |
| chr5_4 | exon | 44990832 | 44991865 | 44990832 | ID=Msa0853250-mRNA-1:exon:14206;Parent=Msa0853250-mRNA-1 |
| chr5_4 | CDS | 44995121 | 44996051 | 44995121 | ID=Msa0853250-mRNA-1:cds;Parent=Msa0853250-mRNA-1 |
| chr5_4 | CDS | 44990832 | 44991865 | 44990832 | ID=Msa0853250-mRNA-1:cds;Parent=Msa0853250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
