AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854300 MtrunA17_Chr5g0431531 97.554 327 7 1 1 326 1 327 0.0 664
Msa0854300 MtrunA17_Chr8g0383321 30.968 310 185 9 10 315 23 307 9.98e-39 139
Msa0854300 MtrunA17_Chr8g0383321 30.208 192 123 4 30 216 125 310 5.14e-17 80.5
Msa0854300 MtrunA17_Chr1g0201361 31.959 291 170 8 35 322 48 313 9.40e-38 137
Msa0854300 MtrunA17_Chr8g0386871 32.609 276 174 6 40 313 322 587 1.98e-35 135
Msa0854300 MtrunA17_Chr8g0386871 26.131 199 135 3 112 310 302 488 8.08e-13 68.9
Msa0854300 MtrunA17_Chr6g0455381 28.621 290 181 6 24 293 3 286 8.58e-35 129
Msa0854300 MtrunA17_Chr6g0455381 22.727 176 129 4 148 318 33 206 1.50e-11 64.3
Msa0854300 MtrunA17_Chr3g0086811 29.254 335 196 7 23 323 11 338 1.62e-34 129
Msa0854300 MtrunA17_Chr7g0219891 31.071 280 163 8 50 307 33 304 3.25e-34 127
Msa0854300 MtrunA17_Chr7g0219891 26.396 197 134 6 128 319 21 211 4.62e-15 74.7
Msa0854300 MtrunA17_Chr5g0396801 27.937 315 202 6 24 313 24 338 8.60e-33 124
Msa0854300 MtrunA17_Chr1g0149111 28.070 285 183 7 38 313 139 410 7.81e-32 123
Msa0854300 MtrunA17_Chr3g0137941 27.336 289 194 7 38 320 122 400 9.17e-32 122
Msa0854300 MtrunA17_Chr3g0137941 26.108 203 131 7 20 211 199 393 5.75e-12 66.2
Msa0854300 MtrunA17_Chr6g0463351 29.391 279 185 6 49 321 78 350 1.42e-30 119
Msa0854300 MtrunA17_Chr2g0293621 30.065 306 183 10 30 312 21 318 1.19e-29 115
Msa0854300 MtrunA17_Chr8g0347451 27.723 303 192 6 38 313 51 353 1.76e-28 113
Msa0854300 MtrunA17_Chr8g0347451 24.510 204 142 5 117 313 39 237 5.04e-14 72.0
Msa0854300 MtrunA17_Chr4g0063561 27.273 286 193 8 38 318 123 398 7.99e-27 108
Msa0854300 MtrunA17_Chr7g0269701 29.965 287 184 9 40 313 24 306 2.21e-26 106
Msa0854300 MtrunA17_Chr3g0131501 28.155 309 198 10 14 310 181 477 1.83e-25 106
Msa0854300 MtrunA17_Chr3g0131501 29.348 184 120 4 38 212 299 481 1.23e-19 89.4
Msa0854300 MtrunA17_Chr3g0131501 25.758 198 133 5 122 316 198 384 9.95e-13 68.6
Msa0854300 MtrunA17_Chr7g0252401 25.974 308 199 7 17 311 186 477 2.43e-25 105
Msa0854300 MtrunA17_Chr7g0252401 29.050 179 122 2 38 212 303 480 1.97e-19 88.6
Msa0854300 MtrunA17_Chr7g0252401 29.255 188 128 3 134 320 209 392 9.32e-12 65.9
Msa0854300 MtrunA17_Chr8g0343381 27.653 311 173 7 52 318 47 349 2.77e-25 103
Msa0854300 MtrunA17_Chr8g0343381 29.688 192 106 6 134 310 41 218 1.47e-12 67.8
Msa0854300 MtrunA17_Chr8g0385571 28.428 299 190 10 25 311 214 500 7.29e-25 104
Msa0854300 MtrunA17_Chr8g0385571 28.962 183 122 2 38 212 321 503 1.08e-20 92.4
Msa0854300 MtrunA17_Chr4g0067231 25.938 320 189 8 40 317 16 329 2.55e-24 100
Msa0854300 MtrunA17_Chr4g0067231 23.113 212 138 4 28 215 119 329 5.58e-12 65.9
Msa0854300 MtrunA17_Chr5g0407451 27.273 286 185 5 33 310 16 286 4.63e-24 99.8
Msa0854300 MtrunA17_Chr2g0296061 26.899 316 185 8 40 315 17 326 1.71e-23 99.0
Msa0854300 MtrunA17_Chr2g0296061 25.238 210 132 4 29 214 119 327 1.31e-12 67.8
Msa0854300 MtrunA17_Chr2g0296061 25.688 218 131 6 129 324 12 220 2.44e-12 67.0
Msa0854300 MtrunA17_Chr7g0240341 26.000 300 200 5 38 319 25 320 2.43e-23 98.2
Msa0854300 MtrunA17_Chr1g0200171 28.028 289 178 8 39 320 526 791 4.76e-23 100
Msa0854300 MtrunA17_Chr4g0028531 28.975 283 171 10 39 303 23 293 8.93e-23 96.7
Msa0854300 MtrunA17_Chr1g0195101 27.737 274 179 6 54 313 35 303 2.20e-22 95.5
Msa0854300 MtrunA17_Chr1g0195101 28.889 180 112 6 50 216 132 308 6.52e-11 62.4
Msa0854300 MtrunA17_Chr6g0488081 25.667 300 189 7 38 314 19 307 7.91e-22 94.0
Msa0854300 MtrunA17_Chr8g0366791 30.263 304 165 13 38 311 9 295 1.09e-21 93.2
Msa0854300 MtrunA17_Chr8g0366791 26.961 204 128 9 28 212 97 298 7.95e-11 62.0
Msa0854300 MtrunA17_Chr5g0436041 27.148 291 188 9 38 310 34 318 2.80e-21 92.4
Msa0854300 MtrunA17_Chr5g0436041 33.537 164 100 3 166 325 75 233 1.70e-14 73.2
Msa0854300 MtrunA17_Chr5g0436041 29.148 223 137 6 8 215 109 325 3.27e-14 72.4
Msa0854300 MtrunA17_Chr5g0423111 26.619 278 177 6 54 313 37 305 7.83e-21 91.7
Msa0854300 MtrunA17_Chr5g0423111 31.111 180 107 7 54 218 135 312 1.07e-11 65.1
Msa0854300 MtrunA17_Chr7g0242311 26.882 279 179 6 54 319 103 369 9.09e-21 92.0
Msa0854300 MtrunA17_Chr4g0006851 27.444 266 175 6 54 313 105 358 1.94e-20 90.9
Msa0854300 MtrunA17_Chr4g0006851 23.204 181 135 1 29 209 180 356 8.66e-16 77.4
Msa0854300 MtrunA17_Chr8g0372531 26.087 276 180 9 52 307 28 299 8.24e-20 88.2
Msa0854300 MtrunA17_Chr3g0133111 25.962 312 192 9 39 316 7 313 2.06e-19 87.0
Msa0854300 MtrunA17_Chr8g0385891 26.214 309 195 8 22 312 51 344 2.42e-19 87.4
Msa0854300 MtrunA17_Chr5g0411411 29.667 300 172 13 38 311 9 295 7.96e-19 85.1
Msa0854300 MtrunA17_Chr5g0411411 27.805 205 128 5 134 323 11 210 8.25e-11 62.0
Msa0854300 MtrunA17_Chr2g0331771 28.302 265 160 7 39 287 157 407 9.24e-19 86.7
Msa0854300 MtrunA17_Chr2g0331771 29.834 181 108 6 48 213 259 435 1.87e-14 73.6
Msa0854300 MtrunA17_Chr6g0461981 26.897 290 185 6 33 310 58 332 1.79e-18 85.1
Msa0854300 MtrunA17_Chr4g0051841 24.211 285 191 6 38 310 29 300 2.66e-18 84.0
Msa0854300 MtrunA17_Chr3g0136041 25.658 304 168 7 51 307 45 337 3.51e-18 84.0
Msa0854300 MtrunA17_Chr4g0000261 22.289 332 207 10 8 313 47 353 5.04e-18 84.0
Msa0854300 MtrunA17_Chr4g0004571 27.308 260 170 6 38 287 16 266 3.13e-17 80.9
Msa0854300 MtrunA17_Chr4g0004571 29.442 197 124 4 27 211 99 292 4.15e-16 77.4
Msa0854300 MtrunA17_Chr3g0135861 26.861 309 187 8 34 313 31 329 5.25e-17 80.5
Msa0854300 MtrunA17_Chr7g0241521 26.263 297 182 12 40 314 19 300 6.78e-15 73.9
Msa0854300 MtrunA17_Chr7g0251981 26.224 286 183 7 40 312 83 353 9.63e-15 74.3
Msa0854300 MtrunA17_Chr4g0046981 27.178 287 186 7 39 307 13 294 1.47e-14 73.2
Msa0854300 MtrunA17_Chr8g0367641 24.841 314 191 8 39 316 11 315 2.37e-14 72.8
Msa0854300 MtrunA17_Chr5g0412401 24.688 320 191 7 39 316 11 322 3.73e-14 72.0
Msa0854300 MtrunA17_Chr1g0196921 22.887 284 191 8 42 307 18 291 4.83e-14 71.6
Msa0854300 MtrunA17_Chr4g0008061 26.102 295 181 13 40 312 17 296 1.02e-13 70.5
Msa0854300 MtrunA17_Chr3g0103681 29.012 162 108 3 54 209 136 296 1.93e-13 69.7
Msa0854300 MtrunA17_Chr3g0103681 25.413 303 194 11 32 314 9 299 4.47e-12 65.9
Msa0854300 MtrunA17_Chr8g0382201 25.753 299 188 9 33 310 194 479 1.81e-12 67.8
Msa0854300 MtrunA17_Chr8g0382201 26.230 183 123 4 131 311 194 366 2.84e-11 64.3
Msa0854300 MtrunA17_Chr6g0463041 26.974 152 106 1 163 314 95 241 2.56e-12 65.9
Msa0854300 MtrunA17_Chr3g0115801 25.888 197 126 6 131 321 115 297 7.63e-12 65.9
Msa0854300 MtrunA17_Chr3g0115801 25.743 303 183 11 33 310 115 400 3.47e-11 63.9
Msa0854300 MtrunA17_Chr6g0488341 24.803 254 155 6 75 314 1 232 8.58e-12 64.3
Msa0854300 MtrunA17_Chr3g0126331 25.781 256 157 8 82 310 135 384 1.53e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854300 AT1G07030.1 73.231 325 74 4 1 317 1 320 1.03e-164 462
Msa0854300 AT1G07030.1 28.788 198 125 7 128 322 38 222 1.81e-12 67.8
Msa0854300 AT2G30160.1 69.851 335 83 3 1 322 1 330 3.98e-160 450
Msa0854300 AT1G07025.1 47.500 160 82 2 24 182 8 166 4.56e-38 133
Msa0854300 AT1G34065.2 30.208 288 173 8 35 319 72 334 1.92e-37 137
Msa0854300 AT1G34065.2 30.476 210 132 5 14 218 135 335 4.99e-18 84.0
Msa0854300 AT1G34065.1 30.208 288 173 8 35 319 79 341 2.55e-37 136
Msa0854300 AT1G34065.1 30.476 210 132 5 14 218 142 342 6.60e-18 83.6
Msa0854300 AT4G39460.2 31.900 279 162 8 35 310 55 308 4.99e-36 132
Msa0854300 AT4G39460.2 30.415 217 133 6 14 223 118 323 1.87e-16 79.3
Msa0854300 AT4G39460.1 31.900 279 162 8 35 310 55 308 4.99e-36 132
Msa0854300 AT4G39460.1 30.415 217 133 6 14 223 118 323 1.87e-16 79.3
Msa0854300 AT4G39460.3 31.900 279 162 8 35 310 55 308 4.99e-36 132
Msa0854300 AT4G39460.3 30.415 217 133 6 14 223 118 323 1.87e-16 79.3
Msa0854300 AT1G74240.1 30.000 320 187 6 27 315 25 338 1.42e-34 130
Msa0854300 AT4G11440.1 30.508 295 193 7 24 313 316 603 2.06e-33 130
Msa0854300 AT4G11440.2 30.508 295 193 7 24 313 316 603 2.06e-33 130
Msa0854300 AT4G32400.1 28.472 288 190 6 38 319 114 391 4.73e-33 126
Msa0854300 AT4G32400.1 26.042 192 124 7 38 218 208 392 1.75e-11 65.1
Msa0854300 AT5G15640.2 28.947 304 185 7 30 307 8 306 9.92e-31 118
Msa0854300 AT5G15640.1 29.097 299 186 6 30 307 20 313 1.12e-30 118
Msa0854300 AT1G74240.2 29.831 295 170 6 52 315 2 290 1.47e-29 115
Msa0854300 AT4G01100.2 28.344 314 184 7 38 310 42 355 2.93e-27 110
Msa0854300 AT4G01100.2 25.000 204 129 5 135 317 46 246 9.92e-12 65.5
Msa0854300 AT4G01100.1 28.383 303 190 8 38 313 42 344 1.03e-26 108
Msa0854300 AT4G01100.1 26.842 190 129 4 135 317 46 232 1.11e-14 74.3
Msa0854300 AT2G37890.1 26.936 297 199 5 32 313 39 332 3.31e-26 106
Msa0854300 AT2G37890.1 31.720 186 116 4 38 214 152 335 7.18e-21 92.0
Msa0854300 AT2G37890.1 31.544 149 94 3 172 316 92 236 3.71e-13 69.7
Msa0854300 AT5G42130.1 26.690 281 191 8 49 321 129 402 3.47e-26 107
Msa0854300 AT3G55640.1 26.174 298 200 6 38 319 38 331 3.70e-26 106
Msa0854300 AT3G55640.4 26.174 298 200 6 38 319 38 331 3.70e-26 106
Msa0854300 AT5G26200.1 27.113 284 176 5 51 307 52 331 9.51e-26 105
Msa0854300 AT2G47490.1 30.292 274 171 7 54 313 33 300 1.06e-25 104
Msa0854300 AT2G47490.1 31.638 177 101 7 50 211 129 300 1.54e-11 64.7
Msa0854300 AT1G72820.1 27.986 293 171 7 51 307 44 332 3.78e-25 103
Msa0854300 AT1G72820.2 27.986 293 171 7 51 307 44 332 3.78e-25 103
Msa0854300 AT4G01100.3 28.231 294 184 8 47 313 1 294 1.82e-24 101
Msa0854300 AT4G01100.3 28.205 195 114 4 40 208 97 291 4.31e-18 83.6
Msa0854300 AT4G01100.3 25.683 183 127 3 142 317 2 182 3.26e-14 72.4
Msa0854300 AT1G25380.1 28.159 277 179 6 54 315 37 308 6.42e-23 98.2
Msa0854300 AT1G25380.1 29.167 192 115 7 50 223 133 321 1.72e-11 65.1
Msa0854300 AT1G25380.2 28.159 277 179 6 54 315 37 308 6.42e-23 98.2
Msa0854300 AT1G25380.2 29.167 192 115 7 50 223 133 321 1.72e-11 65.1
Msa0854300 AT5G61810.2 24.458 323 203 7 17 310 19 329 6.63e-23 97.8
Msa0854300 AT5G61810.2 25.140 179 127 4 38 211 156 332 4.80e-13 69.3
Msa0854300 AT5G51050.1 25.301 332 202 7 17 314 177 496 9.78e-23 99.0
Msa0854300 AT5G51050.1 28.218 202 133 4 121 319 215 407 1.82e-13 71.2
Msa0854300 AT2G17270.1 26.148 283 180 7 39 310 23 287 1.98e-22 95.9
Msa0854300 AT5G61810.1 24.383 324 204 7 17 311 162 473 2.43e-22 97.4
Msa0854300 AT5G61810.1 25.140 179 127 4 38 211 299 475 7.74e-13 69.3
Msa0854300 AT1G79900.1 30.962 239 149 6 53 287 31 257 3.37e-22 95.1
Msa0854300 AT1G79900.1 30.653 199 118 5 25 216 103 288 7.59e-20 88.6
Msa0854300 AT3G53940.1 27.797 295 187 8 38 313 73 360 4.72e-22 95.9
Msa0854300 AT3G53940.1 31.892 185 117 4 38 214 180 363 2.24e-20 90.9
Msa0854300 AT3G53940.1 29.697 165 108 2 166 326 114 274 7.31e-14 72.0
Msa0854300 AT5G01500.1 28.090 267 172 7 54 313 135 388 5.69e-21 93.2
Msa0854300 AT2G35800.1 26.962 293 195 7 24 314 531 806 7.84e-21 94.0
Msa0854300 AT1G14560.1 26.207 290 180 7 51 314 40 321 2.24e-20 90.5
Msa0854300 AT1G14560.1 23.590 195 125 2 38 208 123 317 4.23e-14 72.4
Msa0854300 AT5G46800.2 29.412 306 174 11 35 311 5 297 3.53e-20 89.4
Msa0854300 AT5G46800.3 29.412 306 174 11 35 311 5 297 3.53e-20 89.4
Msa0854300 AT5G46800.1 29.412 306 174 11 35 311 5 297 3.53e-20 89.4
Msa0854300 AT3G20240.1 23.684 304 198 7 39 319 53 345 4.36e-20 90.1
Msa0854300 AT3G51870.1 25.368 272 185 5 54 319 107 366 2.14e-19 88.2
Msa0854300 AT3G51870.1 22.283 184 131 3 30 209 183 358 4.81e-12 66.6
Msa0854300 AT4G26180.1 25.839 298 184 10 38 310 21 306 8.57e-19 85.9
Msa0854300 AT5G07320.1 26.667 270 180 8 47 311 218 474 8.89e-19 87.0
Msa0854300 AT5G07320.1 24.719 178 129 2 38 211 300 476 1.97e-12 68.2
Msa0854300 AT5G66380.1 24.272 309 205 10 35 321 7 308 2.71e-18 84.3
Msa0854300 AT4G24570.1 26.250 320 177 9 39 316 11 313 2.71e-18 84.3
Msa0854300 AT5G01340.1 25.532 282 185 8 39 304 18 290 3.27e-18 84.0
Msa0854300 AT5G14040.1 25.796 314 202 8 15 312 55 353 1.53e-17 82.8
Msa0854300 AT5G09470.1 25.887 282 181 6 54 315 61 334 1.84e-17 82.4
Msa0854300 AT2G26360.1 25.448 279 186 6 33 307 110 370 2.08e-17 82.8
Msa0854300 AT1G14560.2 26.236 263 160 7 51 287 40 294 1.64e-16 79.3
Msa0854300 AT1G14560.2 31.250 176 106 4 148 310 43 216 4.14e-12 66.2
Msa0854300 AT1G14560.2 23.392 171 107 2 38 184 123 293 9.46e-11 62.4
Msa0854300 AT4G26180.2 25.818 275 167 10 38 287 21 283 1.67e-16 79.0
Msa0854300 AT4G26180.2 26.738 187 123 4 135 310 25 208 7.33e-11 62.4
Msa0854300 AT3G48850.1 23.944 284 189 5 39 310 72 340 5.72e-16 78.2
Msa0854300 AT5G48970.1 24.611 321 191 10 40 318 24 335 8.09e-16 77.4
Msa0854300 AT5G48970.1 24.887 221 143 4 123 325 13 228 2.22e-13 70.5
Msa0854300 AT2G22500.1 24.516 310 195 8 39 317 11 312 1.17e-15 76.6
Msa0854300 AT3G21390.1 23.344 317 195 9 40 314 21 331 2.70e-15 75.9
Msa0854300 AT3G21390.1 25.352 213 138 4 123 319 10 217 3.76e-12 66.6
Msa0854300 AT3G21390.2 23.344 317 195 9 40 314 43 353 4.83e-15 75.5
Msa0854300 AT3G21390.2 25.352 213 138 4 123 319 32 239 4.92e-12 66.6
Msa0854300 AT1G14560.3 23.590 195 125 2 38 208 25 219 9.24e-15 73.2
Msa0854300 AT3G55640.2 30.519 154 99 3 166 315 79 228 1.93e-14 72.4
Msa0854300 AT3G55640.3 30.519 154 99 3 166 315 79 228 1.93e-14 72.4
Msa0854300 AT5G48970.2 25.461 271 164 8 77 318 3 264 3.30e-14 72.0
Msa0854300 AT4G03115.1 26.383 235 158 6 25 255 29 252 3.60e-14 72.4
Msa0854300 AT3G53940.2 29.697 165 108 2 166 326 114 274 4.37e-14 72.0
Msa0854300 AT4G03115.3 26.383 235 158 6 25 255 61 284 4.91e-14 72.4
Msa0854300 AT3G54110.1 24.000 300 193 9 42 320 19 304 5.71e-14 72.0
Msa0854300 AT3G54110.1 25.683 183 130 2 38 214 118 300 4.65e-12 66.2
Msa0854300 AT2G33820.1 24.832 298 193 9 27 301 7 296 1.58e-13 70.5
Msa0854300 AT4G27940.1 27.607 163 92 3 163 307 146 300 8.34e-13 68.9
Msa0854300 AT4G03115.5 28.000 175 120 3 82 255 12 181 1.92e-12 66.6
Msa0854300 AT4G03115.6 28.000 175 120 3 82 255 20 189 2.10e-12 66.6
Msa0854300 AT5G58970.1 24.503 302 195 11 32 313 10 298 3.42e-12 66.6
Msa0854300 AT1G14140.1 24.483 290 188 10 38 307 16 294 5.73e-12 65.9
Msa0854300 AT5G56450.1 25.275 182 127 4 39 212 146 326 6.56e-12 65.9
Msa0854300 AT2G33820.3 24.183 306 193 10 27 301 7 304 4.95e-11 63.2

Find 119 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAGAAACTAACTTATTT+TGG 0.149777 5_4:+46657898 None:intergenic
TACTGGCAATTCATGATTTC+TGG 0.161056 5_4:-46662163 Msa0854300:CDS
TTGTTAGCATTTATCATATT+TGG 0.162116 5_4:-46657676 Msa0854300:three_prime_UTR
GTGAAATCGGGTCGGTAATC+TGG 0.205138 5_4:+46662229 None:intergenic
CTGACGGAAACGGATTTAAT+TGG 0.211854 5_4:+46662058 None:intergenic
TTCTTATAGTCAGGTAATTC+AGG 0.225823 5_4:-46657883 Msa0854300:three_prime_UTR
CTTTCTGCTCGTTGTAATCT+TGG 0.231051 5_4:+46658101 None:intergenic
GTTGAGTAATAGTGGTTATA+AGG 0.239383 5_4:-46661792 Msa0854300:CDS
TTATACAGGGCATTATTTAA+TGG 0.255764 5_4:-46657820 Msa0854300:three_prime_UTR
ATGATTTCTGGCTCCATTGC+TGG 0.282177 5_4:-46662151 Msa0854300:CDS
ATTCCATTCCTCTTCTTGTT+TGG 0.290698 5_4:-46662412 Msa0854300:five_prime_UTR
GCGAAATGCACAGCAGTAAA+AGG 0.303287 5_4:+46661680 None:intergenic
CTCGTTGTAATCTTGGAAAA+AGG 0.310351 5_4:+46658108 None:intergenic
TACAACGAGCAGAAAGATTC+TGG 0.317286 5_4:-46658094 Msa0854300:CDS
CGGCGTTAAGTTTGTGAAAT+CGG 0.318663 5_4:+46662216 None:intergenic
GGTATCGGCGCAATGGGCCT+TGG 0.320857 5_4:-46661983 Msa0854300:CDS
GCTACTGCCGGGGCGGCTGC+TGG 0.323395 5_4:-46661581 Msa0854300:CDS
TGTTAAAACAATAGTGAAAA+AGG 0.326887 5_4:-46658227 Msa0854300:CDS
AATGGGCCTTGGCGCCGGTC+CGG 0.341444 5_4:-46661972 Msa0854300:CDS
AATAATGAATATTCTACATT+GGG 0.352895 5_4:+46658051 None:intergenic
TGCGCCGATACCGCGGTATA+AGG 0.353836 5_4:+46661994 None:intergenic
GGCGCAATGGGCCTTGGCGC+CGG 0.356819 5_4:-46661977 Msa0854300:CDS
CTCCCGCAGCCGCTATCTGC+TGG 0.375742 5_4:-46658153 Msa0854300:CDS
CTGCCGGGGCGGCTGCTGGT+GGG 0.377867 5_4:-46661577 Msa0854300:CDS
AGTGTTTACGCCGATGGATA+TGG 0.393475 5_4:-46661831 Msa0854300:CDS
AATGCAACGAAGCCACTATC+TGG 0.396240 5_4:+46657641 None:intergenic
TAAGTTAGTTTCTTATAGTC+AGG 0.397262 5_4:-46657892 Msa0854300:three_prime_UTR
ACTGCCGGGGCGGCTGCTGG+TGG 0.398253 5_4:-46661578 Msa0854300:CDS
CTCAGTGATGATGGAAATAA+TGG 0.402619 5_4:+46662315 None:intergenic
CGGGGCGGCTGCTGGTGGGT+TGG 0.405879 5_4:-46661573 Msa0854300:CDS
TGATATATTATGTAATTTGA+GGG 0.409881 5_4:-46657722 Msa0854300:three_prime_UTR
TGCTAACAAAATATTGTGTT+GGG 0.411727 5_4:+46657690 None:intergenic
GTATAAGGCGGACGGGCCTT+CGG 0.413742 5_4:+46662009 None:intergenic
CTCTCATCATCAACACTCTC+TGG 0.417304 5_4:+46661617 None:intergenic
TTGATATATTATGTAATTTG+AGG 0.423169 5_4:-46657723 Msa0854300:three_prime_UTR
GGCGTTAAGTTTGTGAAATC+GGG 0.424412 5_4:+46662217 None:intergenic
TGGTCTTGCTTCTGTGGCCA+TGG 0.426604 5_4:+46662264 None:intergenic
TTGATTGTTCATGCTACTGC+CGG 0.428369 5_4:-46661593 Msa0854300:CDS
CAACCCACCAGCAGCCGCCC+CGG 0.433417 5_4:+46661574 None:intergenic
ATGCTAACAAAATATTGTGT+TGG 0.442523 5_4:+46657689 None:intergenic
AAACTTTGGTCTTGCTTCTG+TGG 0.445074 5_4:+46662258 None:intergenic
TACCGCGGTATCGGCGCAAT+GGG 0.459673 5_4:-46661989 Msa0854300:CDS
CGTGGGCCGGACCGGCGCCA+AGG 0.462222 5_4:+46661966 None:intergenic
TGAAATCGGGTCGGTAATCT+GGG 0.463068 5_4:+46662230 None:intergenic
TCGTGAGTTGACGGCGGCGC+CGG 0.465043 5_4:+46662196 None:intergenic
ATAAACAGCGTGGGCCGGAC+CGG 0.468252 5_4:+46661958 None:intergenic
TTGAGTAATAGTGGTTATAA+GGG 0.471100 5_4:-46661791 Msa0854300:CDS
CTCACGACGGTCTTCACTAC+TGG 0.471340 5_4:-46662180 Msa0854300:CDS
AGGTTGCAGTTGAGTAATAG+TGG 0.471563 5_4:-46661800 Msa0854300:CDS
TCAGAAGTCAGAACTTCAAA+AGG 0.471641 5_4:+46657957 None:intergenic
GGAGCATGAAAGAGCATCCT+TGG 0.472086 5_4:+46658172 None:intergenic
TCATGCGAGGGTGGGTTCCA+AGG 0.475084 5_4:-46658189 Msa0854300:CDS
AAGAGCTTGACTGACGGAAA+CGG 0.478473 5_4:+46662048 None:intergenic
TGATTGTTCATGCTACTGCC+GGG 0.479934 5_4:-46661592 Msa0854300:CDS
TGCTGGTCTACATATGAAGC+TGG 0.491218 5_4:-46658136 Msa0854300:CDS
TCCGCCTTATACCGCGGTAT+CGG 0.492129 5_4:-46661998 Msa0854300:CDS
TTTCCGTCAGTCAAGCTCTT+CGG 0.494358 5_4:-46662045 Msa0854300:CDS
GAATAATGAATATTCTACAT+TGG 0.500626 5_4:+46658050 None:intergenic
AAACACAGGCTCAGTGATGA+TGG 0.503206 5_4:+46662306 None:intergenic
TGTGTTTGATTGTGTGAAGA+GGG 0.507367 5_4:-46661768 Msa0854300:CDS
GACCAGCAGATAGCGGCTGC+GGG 0.507968 5_4:+46658151 None:intergenic
GCATTTATCATATTTGGTGA+TGG 0.509860 5_4:-46657670 Msa0854300:three_prime_UTR
ACTTATGAAGCTGCGAAAAG+AGG 0.510074 5_4:-46661656 Msa0854300:CDS
AGACCAGCAGATAGCGGCTG+CGG 0.512887 5_4:+46658150 None:intergenic
CTTATGAAGCTGCGAAAAGA+GGG 0.516796 5_4:-46661655 Msa0854300:CDS
TAAAACTCAATTGCAATGCC+AGG 0.525231 5_4:-46661519 Msa0854300:intron
ACTAATTAATTTCTATACCA+TGG 0.527168 5_4:-46662281 Msa0854300:exon
ACAAAGGGCTCATGCGAGGG+TGG 0.536925 5_4:-46658198 Msa0854300:CDS
GAGAAATAAACAGCGTGGGC+CGG 0.537692 5_4:+46661953 None:intergenic
AATCCAAACAAGAAGAGGAA+TGG 0.538985 5_4:+46662409 None:intergenic
CGAAATGAAAAGCGAAGTGA+TGG 0.539749 5_4:+46662461 None:intergenic
AACTCTAAATTATGTGCAGA+GGG 0.539952 5_4:-46657935 Msa0854300:three_prime_UTR
CGAAATCAAATTGATGATGT+AGG 0.541353 5_4:+46662437 None:intergenic
AGGTTCAAAAGTGGTTCCAT+TGG 0.544925 5_4:-46658256 Msa0854300:CDS
TCTCGAATCCAAACAAGAAG+AGG 0.548697 5_4:+46662404 None:intergenic
AAATTATGTGCAGAGGGCAT+CGG 0.550332 5_4:-46657929 Msa0854300:three_prime_UTR
CTCTGTTTCACCATATCCAT+CGG 0.552176 5_4:+46661821 None:intergenic
TTCATGGTGCAGGGTGTGTG+TGG 0.554065 5_4:-46658286 Msa0854300:intron
TGATGGCACACACCAGATAG+TGG 0.558771 5_4:-46657653 Msa0854300:three_prime_UTR
TGACGCAGTGTTTACGCCGA+TGG 0.559443 5_4:-46661837 Msa0854300:CDS
TGAAGACCGTCGTGAGTTGA+CGG 0.559910 5_4:+46662187 None:intergenic
TTTAATTGGACAAGATGTGA+TGG 0.562571 5_4:+46662072 None:intergenic
ATACCGCGGTATCGGCGCAA+TGG 0.570095 5_4:-46661990 Msa0854300:CDS
AGGGTGTGTGTGGATGTGAT+AGG 0.574367 5_4:-46658276 Msa0854300:CDS
GGCCCATTGCGCCGATACCG+CGG 0.581793 5_4:+46661987 None:intergenic
CGGTCAATCTTAAAATCCGA+AGG 0.591376 5_4:-46662025 Msa0854300:CDS
TACCGCGGTATAAGGCGGAC+GGG 0.595175 5_4:+46662002 None:intergenic
GTGTTCGATACAACCAGCAA+TGG 0.597777 5_4:+46662138 None:intergenic
TGCTGGTTGTATCGAACACA+TGG 0.602280 5_4:-46662134 Msa0854300:CDS
AACTGAGAAATAAACAGCGT+GGG 0.604326 5_4:+46661949 None:intergenic
ACAGACAGAGTAATCTGTAG+TGG 0.610734 5_4:+46658020 None:intergenic
CAAAGGGCTCATGCGAGGGT+GGG 0.612108 5_4:-46658197 Msa0854300:CDS
CGATTTCACAAACTTAACGC+CGG 0.614198 5_4:-46662215 Msa0854300:CDS
GGCCCGTCCGCCTTATACCG+CGG 0.614223 5_4:-46662004 Msa0854300:CDS
GTGTGTTTGATTGTGTGAAG+AGG 0.618565 5_4:-46661769 Msa0854300:CDS
TGGTTCGGGTGTTTGTGCGA+CGG 0.622075 5_4:-46661867 Msa0854300:CDS
GGATACAAAGGGCTCATGCG+AGG 0.624051 5_4:-46658202 Msa0854300:CDS
ATAATGAATATTCTACATTG+GGG 0.625607 5_4:+46658052 None:intergenic
GATTGTTCATGCTACTGCCG+GGG 0.628010 5_4:-46661591 Msa0854300:CDS
GAACTCTAAATTATGTGCAG+AGG 0.629777 5_4:-46657936 Msa0854300:three_prime_UTR
TGACCGAAGAGCTTGACTGA+CGG 0.634127 5_4:+46662042 None:intergenic
GATACAAAGGGCTCATGCGA+GGG 0.636199 5_4:-46658201 Msa0854300:CDS
ATACCGCGGTATAAGGCGGA+CGG 0.638059 5_4:+46662001 None:intergenic
GCCGATACCGCGGTATAAGG+CGG 0.649019 5_4:+46661997 None:intergenic
TGTTCATGCTACTGCCGGGG+CGG 0.649622 5_4:-46661588 Msa0854300:CDS
ACACGACGGCAGAATCGTGA+CGG 0.660011 5_4:+46662372 None:intergenic
CAGAGAGTGTTGATGATGAG+AGG 0.663254 5_4:-46661616 Msa0854300:CDS
TTCGGGTGTTTGTGCGACGG+TGG 0.664905 5_4:-46661864 Msa0854300:CDS
TTAAGTTTGTGAAATCGGGT+CGG 0.668350 5_4:+46662221 None:intergenic
ATATGTAGACCAGCAGATAG+CGG 0.675850 5_4:+46658144 None:intergenic
GGATGTGATAGGTTCAAAAG+TGG 0.680142 5_4:-46658265 Msa0854300:CDS
AAACTGAGAAATAAACAGCG+TGG 0.696014 5_4:+46661948 None:intergenic
CGATGGATATGGTGAAACAG+AGG 0.697564 5_4:-46661820 Msa0854300:CDS
CGACGGCAGAATCGTGACGG+AGG 0.704893 5_4:+46662375 None:intergenic
AAATTAATTAGTGAAAACAC+AGG 0.708334 5_4:+46662292 None:intergenic
AGACCGTCGTGAGTTGACGG+CGG 0.717166 5_4:+46662190 None:intergenic
GCAGGTCACAACAAACACGA+CGG 0.738176 5_4:+46662358 None:intergenic
GCGCCGCCGTCAACTCACGA+CGG 0.745640 5_4:-46662193 Msa0854300:CDS
AAATTGATAGAAGAAAACGC+AGG 0.801890 5_4:+46662340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTAGGTTATTTTTA+GGG + chr5_4:46659206-46659225 None:intergenic 15.0%
!!! ATTTCTTTTAGGTTATTTTT+AGG + chr5_4:46659207-46659226 None:intergenic 15.0%
!!! TTCTTTTCTTTATTTCTTTT+AGG + chr5_4:46659218-46659237 None:intergenic 15.0%
!!! AATTATTTTTTGTTCTGTTT+TGG + chr5_4:46661369-46661388 None:intergenic 15.0%
!!! AAAAGGTTTTAAATCTAATT+AGG - chr5_4:46661464-46661483 Msa0854300:intron 15.0%
!!! GATTATTTGTTATTTTTTGT+TGG - chr5_4:46661486-46661505 Msa0854300:intron 15.0%
!! AATAATGAATATTCTACATT+GGG + chr5_4:46662074-46662093 None:intergenic 15.0%
!!! TATAAGAAACTAACTTATTT+TGG + chr5_4:46662227-46662246 None:intergenic 15.0%
!! TTGATATATTATGTAATTTG+AGG - chr5_4:46662399-46662418 Msa0854300:five_prime_UTR 15.0%
!! TGATATATTATGTAATTTGA+GGG - chr5_4:46662400-46662419 Msa0854300:five_prime_UTR 15.0%
!! AAATTAATTAGTGAAAACAC+AGG + chr5_4:46657833-46657852 None:intergenic 20.0%
!! ACTAATTAATTTCTATACCA+TGG - chr5_4:46657841-46657860 Msa0854300:three_prime_UTR 20.0%
!!! ATGTGAGAATTTCTTTTTAA+GGG + chr5_4:46658206-46658225 None:intergenic 20.0%
!!! TTGTGGAATGAAATTTTTTT+GGG - chr5_4:46659368-46659387 Msa0854300:intron 20.0%
!!! TAAATTTTAAACCGTTTCTA+GGG + chr5_4:46659493-46659512 None:intergenic 20.0%
!!! TAGAAACGGTTTAAAATTTA+GGG - chr5_4:46659493-46659512 Msa0854300:intron 20.0%
!! TGATTCATTATAAGATGTTA+TGG - chr5_4:46659956-46659975 Msa0854300:intron 20.0%
!!! ACAAAAATCTTTTTCAACTT+AGG + chr5_4:46660014-46660033 None:intergenic 20.0%
!!! AAGATTTTTGTTATTCTTGT+TGG - chr5_4:46660023-46660042 Msa0854300:intron 20.0%
!!! TATTCCCTATCTATTTTATA+GGG - chr5_4:46660162-46660181 Msa0854300:intron 20.0%
!! GAATTCATAATATATGTTGA+GGG - chr5_4:46660201-46660220 Msa0854300:intron 20.0%
!! AATTCATAATATATGTTGAG+GGG - chr5_4:46660202-46660221 Msa0854300:intron 20.0%
!!! AAAGTTTTACGATTTTTGAT+AGG + chr5_4:46661033-46661052 None:intergenic 20.0%
!! TCAAAAATCGTAAAACTTTA+TGG - chr5_4:46661034-46661053 Msa0854300:intron 20.0%
!! AAATTGTTTACTACTCAAAT+AGG - chr5_4:46661199-46661218 Msa0854300:intron 20.0%
!!! TATTTTTCAGTACTATTTAC+AGG - chr5_4:46661257-46661276 Msa0854300:intron 20.0%
!! ATTAGGTTAAATTACACATT+TGG + chr5_4:46661428-46661447 None:intergenic 20.0%
!!! ACTCAAGATGTTATTTTATT+TGG - chr5_4:46661639-46661658 Msa0854300:CDS 20.0%
!!! ACTTTTATTATACGAATGTT+TGG - chr5_4:46661679-46661698 Msa0854300:CDS 20.0%
!! TAAAGAATGATTGTAAATGA+AGG - chr5_4:46661746-46661765 Msa0854300:CDS 20.0%
!! AAAGAATGATTGTAAATGAA+GGG - chr5_4:46661747-46661766 Msa0854300:CDS 20.0%
!! TGTTAAAACAATAGTGAAAA+AGG - chr5_4:46661895-46661914 Msa0854300:CDS 20.0%
!! ATAATGAATATTCTACATTG+GGG + chr5_4:46662073-46662092 None:intergenic 20.0%
!! GAATAATGAATATTCTACAT+TGG + chr5_4:46662075-46662094 None:intergenic 20.0%
!!! CATAATCATTTTTGTTTTAC+TGG - chr5_4:46662265-46662284 Msa0854300:CDS 20.0%
!!! AATTTTTTGTTCACAAGTTT+GGG - chr5_4:46662344-46662363 Msa0854300:five_prime_UTR 20.0%
!! TTGTTAGCATTTATCATATT+TGG - chr5_4:46662446-46662465 Msa0854300:five_prime_UTR 20.0%
!! CATGTGAGAATTTCTTTTTA+AGG + chr5_4:46658207-46658226 None:intergenic 25.0%
! CTTAAAAAGAAATTCTCACA+TGG - chr5_4:46658205-46658224 Msa0854300:CDS 25.0%
! TTGAGTAATAGTGGTTATAA+GGG - chr5_4:46658331-46658350 Msa0854300:intron 25.0%
! CTTCATATGCTAAACTTTAA+AGG + chr5_4:46658744-46658763 None:intergenic 25.0%
!! ATGTGCTCTTTTAATGAATT+TGG - chr5_4:46658773-46658792 Msa0854300:intron 25.0%
!! TGTGCTCTTTTAATGAATTT+GGG - chr5_4:46658774-46658793 Msa0854300:intron 25.0%
! TCAAATTACACTACACTATA+GGG + chr5_4:46658867-46658886 None:intergenic 25.0%
! TTCAAATTACACTACACTAT+AGG + chr5_4:46658868-46658887 None:intergenic 25.0%
!!! TTGCTATTTGACAATATCAT+AGG + chr5_4:46658903-46658922 None:intergenic 25.0%
!!! GTTGTGGAATGAAATTTTTT+TGG - chr5_4:46659367-46659386 Msa0854300:intron 25.0%
!! CTAAATTTTAAACCGTTTCT+AGG + chr5_4:46659494-46659513 None:intergenic 25.0%
!! CTAGAAACGGTTTAAAATTT+AGG - chr5_4:46659492-46659511 Msa0854300:intron 25.0%
! TGAAGCAAATGATATTAGTA+GGG - chr5_4:46659815-46659834 Msa0854300:intron 25.0%
!!! AAATCTTTTTCAACTTAGGA+TGG + chr5_4:46660010-46660029 None:intergenic 25.0%
!!! GGAATGGTTTTGAAAAATTA+GGG - chr5_4:46660066-46660085 Msa0854300:intron 25.0%
!!! GAATGGTTTTGAAAAATTAG+GGG - chr5_4:46660067-46660086 Msa0854300:intron 25.0%
!!! AATGGTTTTGAAAAATTAGG+GGG - chr5_4:46660068-46660087 Msa0854300:intron 25.0%
!!! AATTTTGTTGTTTGAACCAA+TGG - chr5_4:46660120-46660139 Msa0854300:intron 25.0%
! ACATATAAAATTGACACCAT+TGG + chr5_4:46660139-46660158 None:intergenic 25.0%
!! CTATTCCCTATCTATTTTAT+AGG - chr5_4:46660161-46660180 Msa0854300:intron 25.0%
! AAAGCCCTATAAAATAGATA+GGG + chr5_4:46660169-46660188 None:intergenic 25.0%
! AAAAGCCCTATAAAATAGAT+AGG + chr5_4:46660170-46660189 None:intergenic 25.0%
!!! ATAGGGCTTTTTTGTTAAAT+TGG - chr5_4:46660179-46660198 Msa0854300:intron 25.0%
! GGAATTCATAATATATGTTG+AGG - chr5_4:46660200-46660219 Msa0854300:intron 25.0%
! AATTGACATAATAATGAAGC+TGG - chr5_4:46660459-46660478 Msa0854300:intron 25.0%
!!! GGTGGAATATATTTTTTCTT+AGG + chr5_4:46660523-46660542 None:intergenic 25.0%
! TTTACATATATGTATGCCAT+TGG - chr5_4:46661288-46661307 Msa0854300:intron 25.0%
!!! ACAGAATTGTTGATTTTTGT+CGG - chr5_4:46661314-46661333 Msa0854300:intron 25.0%
! TGAAACCACAAAATTAGTTA+AGG - chr5_4:46661400-46661419 Msa0854300:intron 25.0%
! GAAACCACAAAATTAGTTAA+GGG - chr5_4:46661401-46661420 Msa0854300:intron 25.0%
! TCGTTTGATCAGAAAATATT+AGG + chr5_4:46661445-46661464 None:intergenic 25.0%
!! TATTTTCTGATCAAACGAAA+AGG - chr5_4:46661447-46661466 Msa0854300:intron 25.0%
!!! TATTTTTTGTTGGAGCATTA+TGG - chr5_4:46661496-46661515 Msa0854300:intron 25.0%
!! TAACAATTATTTTCAGACAG+TGG + chr5_4:46661553-46661572 None:intergenic 25.0%
! TGTTGTCATATTGTTTGATA+TGG - chr5_4:46661574-46661593 Msa0854300:CDS 25.0%
! ATATTGTTTGATATGGTCTA+TGG - chr5_4:46661581-46661600 Msa0854300:CDS 25.0%
! AAGAATGATTGTAAATGAAG+GGG - chr5_4:46661748-46661767 Msa0854300:CDS 25.0%
! AAAACAATAGTGAAAAAGGA+CGG - chr5_4:46661899-46661918 Msa0854300:CDS 25.0%
!! TAAGTTAGTTTCTTATAGTC+AGG - chr5_4:46662230-46662249 Msa0854300:CDS 25.0%
!! AATAGCTTTTTGCTTTATAC+AGG - chr5_4:46662288-46662307 Msa0854300:five_prime_UTR 25.0%
!! ATAGCTTTTTGCTTTATACA+GGG - chr5_4:46662289-46662308 Msa0854300:five_prime_UTR 25.0%
!! TTATACAGGGCATTATTTAA+TGG - chr5_4:46662302-46662321 Msa0854300:five_prime_UTR 25.0%
! AAAAAATTCATGTAGCACAT+AGG + chr5_4:46662332-46662351 None:intergenic 25.0%
!!! GAATTTTTTGTTCACAAGTT+TGG - chr5_4:46662343-46662362 Msa0854300:five_prime_UTR 25.0%
!!! ATTTTTTGTTCACAAGTTTG+GGG - chr5_4:46662345-46662364 Msa0854300:five_prime_UTR 25.0%
!!! CTGTAGTTTTAATTATGTGA+AGG - chr5_4:46662371-46662390 Msa0854300:five_prime_UTR 25.0%
! TGCTAACAAAATATTGTGTT+GGG + chr5_4:46662435-46662454 None:intergenic 25.0%
! ATGCTAACAAAATATTGTGT+TGG + chr5_4:46662436-46662455 None:intergenic 25.0%
!! CGAAATCAAATTGATGATGT+AGG + chr5_4:46657688-46657707 None:intergenic 30.0%
AAATTGATAGAAGAAAACGC+AGG + chr5_4:46657785-46657804 None:intergenic 30.0%
!!! TAATCTGGGTTTTGAAACTT+TGG + chr5_4:46657881-46657900 None:intergenic 30.0%
TTTAATTGGACAAGATGTGA+TGG + chr5_4:46658053-46658072 None:intergenic 30.0%
GTTGAGTAATAGTGGTTATA+AGG - chr5_4:46658330-46658349 Msa0854300:intron 30.0%
!! GTGCTTTTTATGCTAGTTAT+AGG - chr5_4:46658398-46658417 Msa0854300:intron 30.0%
!! TGAGTTTTAACAACATCAAG+CGG + chr5_4:46658592-46658611 None:intergenic 30.0%
CAAATTACACTACACTATAG+GGG + chr5_4:46658866-46658885 None:intergenic 30.0%
TAAGACATCTGCTTTGATTA+AGG + chr5_4:46658961-46658980 None:intergenic 30.0%
GTGAAGCAAATGATATTAGT+AGG - chr5_4:46659814-46659833 Msa0854300:intron 30.0%
! GATATTAGTAGGGCTTTAAT+TGG - chr5_4:46659825-46659844 Msa0854300:intron 30.0%
! GGTAGGGTATTACAAATATA+AGG - chr5_4:46659846-46659865 Msa0854300:intron 30.0%
GGGTATTACAAATATAAGGT+TGG - chr5_4:46659850-46659869 Msa0854300:intron 30.0%
TTGGATAGTTGTAGAGTTAT+GGG - chr5_4:46659869-46659888 Msa0854300:intron 30.0%
TCAAACTATTACGAGAGATT+TGG - chr5_4:46659906-46659925 Msa0854300:intron 30.0%
!!! GGGAATGGTTTTGAAAAATT+AGG - chr5_4:46660065-46660084 Msa0854300:intron 30.0%
GAGATAAGAAAGAATCAAGT+GGG + chr5_4:46660604-46660623 None:intergenic 30.0%
TGAGATAAGAAAGAATCAAG+TGG + chr5_4:46660605-46660624 None:intergenic 30.0%
TCTTATCTCATACAAGAAGT+TGG - chr5_4:46660615-46660634 Msa0854300:intron 30.0%
! TGCATTTTCCTTGATAAGTT+TGG + chr5_4:46660970-46660989 None:intergenic 30.0%
AACTTATCAAGGAAAATGCA+TGG - chr5_4:46660970-46660989 Msa0854300:intron 30.0%
! CTATCTAAACTAGTACTGAA+AGG + chr5_4:46661093-46661112 None:intergenic 30.0%
AGAGAGAGAGAAATAAATAC+AGG - chr5_4:46661154-46661173 Msa0854300:intron 30.0%
GAGAGAGAGAAATAAATACA+GGG - chr5_4:46661155-46661174 Msa0854300:intron 30.0%
TCAACAATTCTGTTAACCAA+TGG + chr5_4:46661307-46661326 None:intergenic 30.0%
TGACCAACTAAAGTAAAGTT+AGG - chr5_4:46661340-46661359 Msa0854300:intron 30.0%
GACCAACTAAAGTAAAGTTA+GGG - chr5_4:46661341-46661360 Msa0854300:intron 30.0%
ACCAACTAAAGTAAAGTTAG+GGG - chr5_4:46661342-46661361 Msa0854300:intron 30.0%
TGGAGAATTGATCTTAACAT+TGG - chr5_4:46661812-46661831 Msa0854300:CDS 30.0%
TGATCTTAACATTGGATTCA+TGG - chr5_4:46661820-46661839 Msa0854300:CDS 30.0%
AACTCTAAATTATGTGCAGA+GGG - chr5_4:46662187-46662206 Msa0854300:CDS 30.0%
TTCTTATAGTCAGGTAATTC+AGG - chr5_4:46662239-46662258 Msa0854300:CDS 30.0%
! GCATTTATCATATTTGGTGA+TGG - chr5_4:46662452-46662471 Msa0854300:five_prime_UTR 30.0%
ATTCCATTCCTCTTCTTGTT+TGG - chr5_4:46657710-46657729 Msa0854300:three_prime_UTR 35.0%
AATCCAAACAAGAAGAGGAA+TGG + chr5_4:46657716-46657735 None:intergenic 35.0%
!! CTCAGTGATGATGGAAATAA+TGG + chr5_4:46657810-46657829 None:intergenic 35.0%
TTAAGTTTGTGAAATCGGGT+CGG + chr5_4:46657904-46657923 None:intergenic 35.0%
TACTGGCAATTCATGATTTC+TGG - chr5_4:46657959-46657978 Msa0854300:three_prime_UTR 35.0%
AACTGAGAAATAAACAGCGT+GGG + chr5_4:46658176-46658195 None:intergenic 35.0%
AAACTGAGAAATAAACAGCG+TGG + chr5_4:46658177-46658196 None:intergenic 35.0%
! AGTGATCATTTTGTTCATGC+TGG - chr5_4:46658235-46658254 Msa0854300:CDS 35.0%
!! TCATTTTGTTCATGCTGGTT+CGG - chr5_4:46658240-46658259 Msa0854300:CDS 35.0%
TGTGTTTGATTGTGTGAAGA+GGG - chr5_4:46658354-46658373 Msa0854300:intron 35.0%
TAAAACTCAATTGCAATGCC+AGG - chr5_4:46658603-46658622 Msa0854300:intron 35.0%
ATTGTTGTCATAGCTATACC+TGG + chr5_4:46658624-46658643 None:intergenic 35.0%
CTTTCTCTGTTATTGGCATT+GGG + chr5_4:46659005-46659024 None:intergenic 35.0%
TCTTTCTCTGTTATTGGCAT+TGG + chr5_4:46659006-46659025 None:intergenic 35.0%
CTGTTCTCTTTCTCTGTTAT+TGG + chr5_4:46659012-46659031 None:intergenic 35.0%
AAAGAAGAACCTTTGACTGA+TGG - chr5_4:46659304-46659323 Msa0854300:intron 35.0%
!!! AGAGAAGTTTTGTTGTGCAA+TGG - chr5_4:46659330-46659349 Msa0854300:intron 35.0%
!!! TTTTGGGTTTTGTTTTGCCA+TGG - chr5_4:46659384-46659403 Msa0854300:intron 35.0%
AGTTACTAAACTGTGAGAAG+AGG - chr5_4:46659431-46659450 Msa0854300:intron 35.0%
GTTACTAAACTGTGAGAAGA+GGG - chr5_4:46659432-46659451 Msa0854300:intron 35.0%
! AACCGTTTCTAGGGAAATTT+GGG + chr5_4:46659484-46659503 None:intergenic 35.0%
! AAACCGTTTCTAGGGAAATT+TGG + chr5_4:46659485-46659504 None:intergenic 35.0%
TTCACATTTGAACACAGTAG+TGG - chr5_4:46659529-46659548 Msa0854300:intron 35.0%
TAGTTAATAGCGCGATATAG+CGG + chr5_4:46659672-46659691 None:intergenic 35.0%
TGAAAATGACAACCAAACCT+AGG + chr5_4:46659695-46659714 None:intergenic 35.0%
TTTGAGAATGTGAGTTCCAT+AGG - chr5_4:46659734-46659753 Msa0854300:intron 35.0%
CAAACTCTTTGTGCTTATGT+GGG - chr5_4:46659757-46659776 Msa0854300:intron 35.0%
AAACTCTTTGTGCTTATGTG+GGG - chr5_4:46659758-46659777 Msa0854300:intron 35.0%
! TTAGTAGGGCTTTAATTGGT+AGG - chr5_4:46659829-46659848 Msa0854300:intron 35.0%
! TAGTAGGGCTTTAATTGGTA+GGG - chr5_4:46659830-46659849 Msa0854300:intron 35.0%
GTTGGATAGTTGTAGAGTTA+TGG - chr5_4:46659868-46659887 Msa0854300:intron 35.0%
ATAGTTGTAGAGTTATGGGT+TGG - chr5_4:46659873-46659892 Msa0854300:intron 35.0%
TAGTTGTAGAGTTATGGGTT+GGG - chr5_4:46659874-46659893 Msa0854300:intron 35.0%
! TTGTTGGTGTGTTGTTGAAA+TGG - chr5_4:46660039-46660058 Msa0854300:intron 35.0%
! GTGTGTTGTTGAAATGGTTA+GGG - chr5_4:46660045-46660064 Msa0854300:intron 35.0%
TTGTTGAAATGGTTAGGGAA+TGG - chr5_4:46660050-46660069 Msa0854300:intron 35.0%
CATAATATATGTTGAGGGGA+TGG - chr5_4:46660206-46660225 Msa0854300:intron 35.0%
! TGTGATTTTATGCGACTGAA+TGG - chr5_4:46660252-46660271 Msa0854300:intron 35.0%
! GTGATTTTATGCGACTGAAT+GGG - chr5_4:46660253-46660272 Msa0854300:intron 35.0%
! TGATTTTATGCGACTGAATG+GGG - chr5_4:46660254-46660273 Msa0854300:intron 35.0%
!! TCCTATACAGTTCTGGAATT+AGG + chr5_4:46660440-46660459 None:intergenic 35.0%
TGTCAATTCCTATACAGTTC+TGG + chr5_4:46660447-46660466 None:intergenic 35.0%
! ATGTTTTCCTCCATCTTGTA+AGG + chr5_4:46660494-46660513 None:intergenic 35.0%
AGAAAGAATCAAGTGGGAAA+AGG + chr5_4:46660598-46660617 None:intergenic 35.0%
! CTCATTCTTTTTGTTGGAGA+GGG + chr5_4:46660659-46660678 None:intergenic 35.0%
! TCTCATTCTTTTTGTTGGAG+AGG + chr5_4:46660660-46660679 None:intergenic 35.0%
TCCAACAAAAAGAATGAGAG+TGG - chr5_4:46660661-46660680 Msa0854300:intron 35.0%
CCAACAAAAAGAATGAGAGT+GGG - chr5_4:46660662-46660681 Msa0854300:intron 35.0%
TGATAAGTTTGGATTCTCTC+CGG + chr5_4:46660959-46660978 None:intergenic 35.0%
GAGAGAATCCAAACTTATCA+AGG - chr5_4:46660959-46660978 Msa0854300:intron 35.0%
ATTTCTCTCTCTCTCATAAC+TGG + chr5_4:46661148-46661167 None:intergenic 35.0%
TCCCCTAACTTTACTTTAGT+TGG + chr5_4:46661346-46661365 None:intergenic 35.0%
! TGGTCCCTTAACTAATTTTG+TGG + chr5_4:46661408-46661427 None:intergenic 35.0%
!! ATGGTGTTGTTTGATTCATG+TGG - chr5_4:46661515-46661534 Msa0854300:intron 35.0%
ATACGAATGTTTGGTATCCT+TGG - chr5_4:46661688-46661707 Msa0854300:CDS 35.0%
TACGAATGTTTGGTATCCTT+GGG - chr5_4:46661689-46661708 Msa0854300:CDS 35.0%
TAGAATCATTGTCAAACCCA+AGG + chr5_4:46661708-46661727 None:intergenic 35.0%
!!! TGTTTTAACAACATCGCCAA+TGG + chr5_4:46661885-46661904 None:intergenic 35.0%
TGAAAAAGGACGGATACAAA+GGG - chr5_4:46661909-46661928 Msa0854300:CDS 35.0%
CTCGTTGTAATCTTGGAAAA+AGG + chr5_4:46662017-46662036 None:intergenic 35.0%
!!! TCTACATTGGGGTTTTGTTT+AGG + chr5_4:46662062-46662081 None:intergenic 35.0%
TCAGAAGTCAGAACTTCAAA+AGG + chr5_4:46662168-46662187 None:intergenic 35.0%
GAACTCTAAATTATGTGCAG+AGG - chr5_4:46662186-46662205 Msa0854300:CDS 35.0%
CGAAATGAAAAGCGAAGTGA+TGG + chr5_4:46657664-46657683 None:intergenic 40.0%
TCTCGAATCCAAACAAGAAG+AGG + chr5_4:46657721-46657740 None:intergenic 40.0%
!! AAACTTTGGTCTTGCTTCTG+TGG + chr5_4:46657867-46657886 None:intergenic 40.0%
GGCGTTAAGTTTGTGAAATC+GGG + chr5_4:46657908-46657927 None:intergenic 40.0%
CGGCGTTAAGTTTGTGAAAT+CGG + chr5_4:46657909-46657928 None:intergenic 40.0%
CGATTTCACAAACTTAACGC+CGG - chr5_4:46657907-46657926 Msa0854300:three_prime_UTR 40.0%
!! TGAGTTTTAACGGTGTCAAC+GGG + chr5_4:46658022-46658041 None:intergenic 40.0%
!! GTGAGTTTTAACGGTGTCAA+CGG + chr5_4:46658023-46658042 None:intergenic 40.0%
!! GGCTTGCATGTGAGTTTTAA+CGG + chr5_4:46658032-46658051 None:intergenic 40.0%
! CTGACGGAAACGGATTTAAT+TGG + chr5_4:46658067-46658086 None:intergenic 40.0%
CGGTCAATCTTAAAATCCGA+AGG - chr5_4:46658097-46658116 Msa0854300:CDS 40.0%
!!! CATTTTGTTCATGCTGGTTC+GGG - chr5_4:46658241-46658260 Msa0854300:CDS 40.0%
CTCTGTTTCACCATATCCAT+CGG + chr5_4:46658304-46658323 None:intergenic 40.0%
AGGTTGCAGTTGAGTAATAG+TGG - chr5_4:46658322-46658341 Msa0854300:intron 40.0%
GTGTGTTTGATTGTGTGAAG+AGG - chr5_4:46658353-46658372 Msa0854300:intron 40.0%
ACTTATGAAGCTGCGAAAAG+AGG - chr5_4:46658466-46658485 Msa0854300:intron 40.0%
CTTATGAAGCTGCGAAAAGA+GGG - chr5_4:46658467-46658486 Msa0854300:intron 40.0%
TTGATTGTTCATGCTACTGC+CGG - chr5_4:46658529-46658548 Msa0854300:intron 40.0%
ATATACCACATAAGCGCAGA+AGG + chr5_4:46658800-46658819 None:intergenic 40.0%
CATTCACAAGTCACAAACAC+AGG + chr5_4:46658824-46658843 None:intergenic 40.0%
! CTGTGTTTGTGACTTGTGAA+TGG - chr5_4:46658822-46658841 Msa0854300:intron 40.0%
!!! AAGTTTTGTTGTGCAATGGC+TGG - chr5_4:46659334-46659353 Msa0854300:intron 40.0%
!!! AGTTTTGTTGTGCAATGGCT+GGG - chr5_4:46659335-46659354 Msa0854300:intron 40.0%
AAACTGTGAGAAGAGGGAAA+AGG - chr5_4:46659438-46659457 Msa0854300:intron 40.0%
AACTGTGAGAAGAGGGAAAA+GGG - chr5_4:46659439-46659458 Msa0854300:intron 40.0%
TCCCCAAATTTCCCTAGAAA+CGG - chr5_4:46659479-46659498 Msa0854300:intron 40.0%
! ACCGTTTCTAGGGAAATTTG+GGG + chr5_4:46659483-46659502 None:intergenic 40.0%
TATTGCGAACTTCTCTGCTA+TGG - chr5_4:46659611-46659630 Msa0854300:intron 40.0%
TATCGCGCTATTAACTACCT+AGG - chr5_4:46659675-46659694 Msa0854300:intron 40.0%
CGCTATTAACTACCTAGGTT+TGG - chr5_4:46659680-46659699 Msa0854300:intron 40.0%
AAGCACAAAGAGTTTGCCTA+TGG + chr5_4:46659753-46659772 None:intergenic 40.0%
GCAAACTCTTTGTGCTTATG+TGG - chr5_4:46659756-46659775 Msa0854300:intron 40.0%
! GGTGTGTTGTTGAAATGGTT+AGG - chr5_4:46660044-46660063 Msa0854300:intron 40.0%
AGGGGATGGCTAAAACTTAA+AGG - chr5_4:46660220-46660239 Msa0854300:intron 40.0%
GGATGGCTAAAACTTAAAGG+TGG - chr5_4:46660223-46660242 Msa0854300:intron 40.0%
AGTCGCATAAAATCACACTC+AGG + chr5_4:46660249-46660268 None:intergenic 40.0%
GGTACCATAACTTCATGTTG+GGG + chr5_4:46660301-46660320 None:intergenic 40.0%
CGGTACCATAACTTCATGTT+GGG + chr5_4:46660302-46660321 None:intergenic 40.0%
CCAACATGAAGTTATGGTAC+CGG - chr5_4:46660300-46660319 Msa0854300:intron 40.0%
CAACATGAAGTTATGGTACC+GGG - chr5_4:46660301-46660320 Msa0854300:intron 40.0%
!! TTGGGTGCTGTTATGATGAT+AGG - chr5_4:46660379-46660398 Msa0854300:intron 40.0%
! TCTGGAATTAGGCAGTAACA+GGG + chr5_4:46660429-46660448 None:intergenic 40.0%
!! TTCTGGAATTAGGCAGTAAC+AGG + chr5_4:46660430-46660449 None:intergenic 40.0%
GCCTAATTCCAGAACTGTAT+AGG - chr5_4:46660436-46660455 Msa0854300:intron 40.0%
TGGGAAAAGGTGGTTTAATG+TGG + chr5_4:46660585-46660604 None:intergenic 40.0%
AAGAATCAAGTGGGAAAAGG+TGG + chr5_4:46660595-46660614 None:intergenic 40.0%
! CCCACTCTCATTCTTTTTGT+TGG + chr5_4:46660665-46660684 None:intergenic 40.0%
AAAAGAATGAGAGTGGGAAG+AGG - chr5_4:46660668-46660687 Msa0854300:intron 40.0%
AAAGAATGAGAGTGGGAAGA+GGG - chr5_4:46660669-46660688 Msa0854300:intron 40.0%
!! AGGGAAATGAGGAGTTGATA+TGG - chr5_4:46660700-46660719 Msa0854300:intron 40.0%
!!! GGATTTTTTGACAACTGCGA+TGG - chr5_4:46660823-46660842 Msa0854300:intron 40.0%
TGGTCTATGGTGTTTGATCA+AGG - chr5_4:46661594-46661613 Msa0854300:CDS 40.0%
! ATCCCTATCTTTTCTCTCGT+TGG - chr5_4:46661792-46661811 Msa0854300:CDS 40.0%
CTCCAACGAGAGAAAAGATA+GGG + chr5_4:46661797-46661816 None:intergenic 40.0%
TCTCCAACGAGAGAAAAGAT+AGG + chr5_4:46661798-46661817 None:intergenic 40.0%
TAACATTGGATTCATGGTGC+AGG - chr5_4:46661826-46661845 Msa0854300:CDS 40.0%
AACATTGGATTCATGGTGCA+GGG - chr5_4:46661827-46661846 Msa0854300:CDS 40.0%
GGATGTGATAGGTTCAAAAG+TGG - chr5_4:46661857-46661876 Msa0854300:CDS 40.0%
AGGTTCAAAAGTGGTTCCAT+TGG - chr5_4:46661866-46661885 Msa0854300:CDS 40.0%
GTGAAAAAGGACGGATACAA+AGG - chr5_4:46661908-46661927 Msa0854300:CDS 40.0%
ATATGTAGACCAGCAGATAG+CGG + chr5_4:46661981-46662000 None:intergenic 40.0%
CTTTCTGCTCGTTGTAATCT+TGG + chr5_4:46662024-46662043 None:intergenic 40.0%
TACAACGAGCAGAAAGATTC+TGG - chr5_4:46662028-46662047 Msa0854300:CDS 40.0%
ACAGACAGAGTAATCTGTAG+TGG + chr5_4:46662105-46662124 None:intergenic 40.0%
! AAATTATGTGCAGAGGGCAT+CGG - chr5_4:46662193-46662212 Msa0854300:CDS 40.0%
AAACACAGGCTCAGTGATGA+TGG + chr5_4:46657819-46657838 None:intergenic 45.0%
TGAAATCGGGTCGGTAATCT+GGG + chr5_4:46657895-46657914 None:intergenic 45.0%
!! ATGATTTCTGGCTCCATTGC+TGG - chr5_4:46657971-46657990 Msa0854300:three_prime_UTR 45.0%
GTGTTCGATACAACCAGCAA+TGG + chr5_4:46657987-46658006 None:intergenic 45.0%
! TGCTGGTTGTATCGAACACA+TGG - chr5_4:46657988-46658007 Msa0854300:three_prime_UTR 45.0%
AAGAGCTTGACTGACGGAAA+CGG + chr5_4:46658077-46658096 None:intergenic 45.0%
TTTCCGTCAGTCAAGCTCTT+CGG - chr5_4:46658077-46658096 Msa0854300:exon 45.0%
AGTGTTTACGCCGATGGATA+TGG - chr5_4:46658291-46658310 Msa0854300:intron 45.0%
CGATGGATATGGTGAAACAG+AGG - chr5_4:46658302-46658321 Msa0854300:intron 45.0%
!!! TGTGAAGAGGGTTTTGAGTG+AGG - chr5_4:46658366-46658385 Msa0854300:intron 45.0%
!!! AAGAGGGTTTTGAGTGAGGA+AGG - chr5_4:46658370-46658389 Msa0854300:intron 45.0%
!!! AGAGGGTTTTGAGTGAGGAA+GGG - chr5_4:46658371-46658390 Msa0854300:intron 45.0%
!! GTTTTGAGTGAGGAAGGGTT+TGG - chr5_4:46658376-46658395 Msa0854300:intron 45.0%
GCGAAATGCACAGCAGTAAA+AGG + chr5_4:46658445-46658464 None:intergenic 45.0%
CTCTCATCATCAACACTCTC+TGG + chr5_4:46658508-46658527 None:intergenic 45.0%
!! CAGAGAGTGTTGATGATGAG+AGG - chr5_4:46658506-46658525 Msa0854300:intron 45.0%
TGATTGTTCATGCTACTGCC+GGG - chr5_4:46658530-46658549 Msa0854300:intron 45.0%
TTCTCTCAGCCATCAGTCAA+AGG + chr5_4:46659316-46659335 None:intergenic 45.0%
!!! GGTTTTGTTTTGCCATGGCT+GGG - chr5_4:46659389-46659408 Msa0854300:intron 45.0%
TGAGAAGAGGGAAAAGGGTT+AGG - chr5_4:46659444-46659463 Msa0854300:intron 45.0%
GAGAAGAGGGAAAAGGGTTA+GGG - chr5_4:46659445-46659464 Msa0854300:intron 45.0%
CTAGGGAAATTTGGGGATCT+AGG + chr5_4:46659476-46659495 None:intergenic 45.0%
GATATAGCGGCATATCGAAG+CGG + chr5_4:46659659-46659678 None:intergenic 45.0%
CCGGTACCATAACTTCATGT+TGG + chr5_4:46660303-46660322 None:intergenic 45.0%
ATTGCAGACTGCAGAGAGTT+TGG - chr5_4:46660360-46660379 Msa0854300:intron 45.0%
TTGCAGACTGCAGAGAGTTT+GGG - chr5_4:46660361-46660380 Msa0854300:intron 45.0%
GGATTTGTGCATTCTGCACT+TGG + chr5_4:46660407-46660426 None:intergenic 45.0%
CTGGAATTAGGCAGTAACAG+GGG + chr5_4:46660428-46660447 None:intergenic 45.0%
GAGCAGTACTCCTTACAAGA+TGG - chr5_4:46660481-46660500 Msa0854300:intron 45.0%
CAGTACTCCTTACAAGATGG+AGG - chr5_4:46660484-46660503 Msa0854300:intron 45.0%
!! GAGCGCGAAGTGTTGTTAAA+TGG - chr5_4:46660770-46660789 Msa0854300:intron 45.0%
!! TAAATGGTGTTGCACCCCTA+TGG - chr5_4:46660786-46660805 Msa0854300:intron 45.0%
!! CTGTTTGTGCAGCGGATTTT+TGG - chr5_4:46660896-46660915 Msa0854300:intron 45.0%
TTCCCCCATATTCTTGTCGT+GGG - chr5_4:46660921-46660940 Msa0854300:intron 45.0%
ATGGCCCACGACAAGAATAT+GGG + chr5_4:46660928-46660947 None:intergenic 45.0%
! TGCTGGTCTACATATGAAGC+TGG - chr5_4:46661986-46662005 Msa0854300:CDS 45.0%
AATGCAACGAAGCCACTATC+TGG + chr5_4:46662484-46662503 None:intergenic 45.0%
GCAGGTCACAACAAACACGA+CGG + chr5_4:46657767-46657786 None:intergenic 50.0%
GTGAAATCGGGTCGGTAATC+TGG + chr5_4:46657896-46657915 None:intergenic 50.0%
! TGAAGACCGTCGTGAGTTGA+CGG + chr5_4:46657938-46657957 None:intergenic 50.0%
TGACCGAAGAGCTTGACTGA+CGG + chr5_4:46658083-46658102 None:intergenic 50.0%
GAGAAATAAACAGCGTGGGC+CGG + chr5_4:46658172-46658191 None:intergenic 50.0%
GATTGTTCATGCTACTGCCG+GGG - chr5_4:46658531-46658550 Msa0854300:intron 50.0%
!!! GGCTGGGAGAAGTTTTGTTG+TGG - chr5_4:46659351-46659370 Msa0854300:intron 50.0%
!!! GGGTTTTGTTTTGCCATGGC+TGG - chr5_4:46659388-46659407 Msa0854300:intron 50.0%
! TGTCTTTTCACTCCCAGCCA+TGG + chr5_4:46659404-46659423 None:intergenic 50.0%
GGCTGGGAGTGAAAAGACAA+TGG - chr5_4:46659405-46659424 Msa0854300:intron 50.0%
TTCGCAATAGCAGCTGCTCA+AGG + chr5_4:46659600-46659619 None:intergenic 50.0%
GGGGATCAAAACACAGCCTT+AGG - chr5_4:46660273-46660292 Msa0854300:intron 50.0%
! ACTTCATGTTGGGGCACCTA+AGG + chr5_4:46660292-46660311 None:intergenic 50.0%
GGTGCCCCAACATGAAGTTA+TGG - chr5_4:46660294-46660313 Msa0854300:intron 50.0%
ACCTTGAAGCAGCACAAACC+CGG + chr5_4:46660322-46660341 None:intergenic 50.0%
TATTCCACCCTTGACCGAGA+AGG - chr5_4:46660534-46660553 Msa0854300:intron 50.0%
ATCTGCTCCTTCTCGGTCAA+GGG + chr5_4:46660544-46660563 None:intergenic 50.0%
GAGAGGGATGCATGTATGAG+AGG + chr5_4:46660643-46660662 None:intergenic 50.0%
TGGGAAGAGGGAGAAGATGA+GGG - chr5_4:46660681-46660700 Msa0854300:intron 50.0%
GGGAGAAGATGAGGGAAATG+AGG - chr5_4:46660689-46660708 Msa0854300:intron 50.0%
ACCACAGCATTCTGCCATAG+GGG + chr5_4:46660803-46660822 None:intergenic 50.0%
CACCACAGCATTCTGCCATA+GGG + chr5_4:46660804-46660823 None:intergenic 50.0%
AAACAGAACACTGCGGCCTA+TGG + chr5_4:46660882-46660901 None:intergenic 50.0%
GCTGCACAAACAGAACACTG+CGG + chr5_4:46660889-46660908 None:intergenic 50.0%
GCAGTGTTCTGTTTGTGCAG+CGG - chr5_4:46660888-46660907 Msa0854300:intron 50.0%
CACGACAAGAATATGGGGGA+AGG + chr5_4:46660922-46660941 None:intergenic 50.0%
CTTCCCCCATATTCTTGTCG+TGG - chr5_4:46660920-46660939 Msa0854300:intron 50.0%
TGGCCCACGACAAGAATATG+GGG + chr5_4:46660927-46660946 None:intergenic 50.0%
GATGGCCCACGACAAGAATA+TGG + chr5_4:46660929-46660948 None:intergenic 50.0%
!! ATTCTCTCCGGTGTTGTCGA+TGG + chr5_4:46660947-46660966 None:intergenic 50.0%
AGGGTGTGTGTGGATGTGAT+AGG - chr5_4:46661846-46661865 Msa0854300:CDS 50.0%
GATACAAAGGGCTCATGCGA+GGG - chr5_4:46661921-46661940 Msa0854300:CDS 50.0%
!! GGAGCATGAAAGAGCATCCT+TGG + chr5_4:46661953-46661972 None:intergenic 50.0%
TGATGGCACACACCAGATAG+TGG - chr5_4:46662469-46662488 Msa0854300:five_prime_UTR 50.0%
ACACGACGGCAGAATCGTGA+CGG + chr5_4:46657753-46657772 None:intergenic 55.0%
! TGGTCTTGCTTCTGTGGCCA+TGG + chr5_4:46657861-46657880 None:intergenic 55.0%
CTCACGACGGTCTTCACTAC+TGG - chr5_4:46657942-46657961 Msa0854300:three_prime_UTR 55.0%
ATACCGCGGTATAAGGCGGA+CGG + chr5_4:46658124-46658143 None:intergenic 55.0%
TCCGCCTTATACCGCGGTAT+CGG - chr5_4:46658124-46658143 Msa0854300:CDS 55.0%
! TGGTTCGGGTGTTTGTGCGA+CGG - chr5_4:46658255-46658274 Msa0854300:CDS 55.0%
TGACGCAGTGTTTACGCCGA+TGG - chr5_4:46658285-46658304 Msa0854300:intron 55.0%
TTGGGCCTTCTGCGCTTATG+TGG - chr5_4:46658792-46658811 Msa0854300:intron 55.0%
!! CTGGGTAGCGGACAGGTTAA+CGG + chr5_4:46659563-46659582 None:intergenic 55.0%
! AAGGTGCTATAGCGCCTCCT+GGG + chr5_4:46659581-46659600 None:intergenic 55.0%
TGCTATGGCCATTACCAGCG+CGG - chr5_4:46659626-46659645 Msa0854300:intron 55.0%
GCACACTGTCGTGACAAACG+TGG + chr5_4:46659787-46659806 None:intergenic 55.0%
!! ACCGGGTTTGTGCTGCTTCA+AGG - chr5_4:46660318-46660337 Msa0854300:intron 55.0%
GATCTGCTCCTTCTCGGTCA+AGG + chr5_4:46660545-46660564 None:intergenic 55.0%
AGCACGGATCTGCTCCTTCT+CGG + chr5_4:46660551-46660570 None:intergenic 55.0%
GGTGGTTTAATGTGGCAGCG+AGG + chr5_4:46660577-46660596 None:intergenic 55.0%
GTGGGAAGAGGGAGAAGATG+AGG - chr5_4:46660680-46660699 Msa0854300:intron 55.0%
ACCCCTATGGCAGAATGCTG+TGG - chr5_4:46660799-46660818 Msa0854300:intron 55.0%
CCACCACAGCATTCTGCCAT+AGG + chr5_4:46660805-46660824 None:intergenic 55.0%
CCTATGGCAGAATGCTGTGG+TGG - chr5_4:46660802-46660821 Msa0854300:intron 55.0%
GGCCCACGACAAGAATATGG+GGG + chr5_4:46660926-46660945 None:intergenic 55.0%
TTCATGGTGCAGGGTGTGTG+TGG - chr5_4:46661836-46661855 Msa0854300:CDS 55.0%
GGATACAAAGGGCTCATGCG+AGG - chr5_4:46661920-46661939 Msa0854300:CDS 55.0%
! AGACCGTCGTGAGTTGACGG+CGG + chr5_4:46657935-46657954 None:intergenic 60.0%
GTATAAGGCGGACGGGCCTT+CGG + chr5_4:46658116-46658135 None:intergenic 60.0%
TACCGCGGTATAAGGCGGAC+GGG + chr5_4:46658123-46658142 None:intergenic 60.0%
GCCGATACCGCGGTATAAGG+CGG + chr5_4:46658128-46658147 None:intergenic 60.0%
! TGCGCCGATACCGCGGTATA+AGG + chr5_4:46658131-46658150 None:intergenic 60.0%
!! ATACCGCGGTATCGGCGCAA+TGG - chr5_4:46658132-46658151 Msa0854300:CDS 60.0%
!! TACCGCGGTATCGGCGCAAT+GGG - chr5_4:46658133-46658152 Msa0854300:CDS 60.0%
ATAAACAGCGTGGGCCGGAC+CGG + chr5_4:46658167-46658186 None:intergenic 60.0%
TTCGGGTGTTTGTGCGACGG+TGG - chr5_4:46658258-46658277 Msa0854300:CDS 60.0%
TGTTCATGCTACTGCCGGGG+CGG - chr5_4:46658534-46658553 Msa0854300:intron 60.0%
CGTTAACCTGTCCGCTACCC+AGG - chr5_4:46659561-46659580 Msa0854300:intron 60.0%
TAACCTGTCCGCTACCCAGG+AGG - chr5_4:46659564-46659583 Msa0854300:intron 60.0%
CTATAGCGCCTCCTGGGTAG+CGG + chr5_4:46659575-46659594 None:intergenic 60.0%
! CAAGGTGCTATAGCGCCTCC+TGG + chr5_4:46659582-46659601 None:intergenic 60.0%
CGGCATATCGAAGCGGACGT+TGG + chr5_4:46659652-46659671 None:intergenic 60.0%
TGCTCCTTCTCGGTCAAGGG+TGG + chr5_4:46660541-46660560 None:intergenic 60.0%
TGTGGCAGCGAGGTTGAGCA+CGG + chr5_4:46660567-46660586 None:intergenic 60.0%
GCCTGCCATTGCAGCACCAT+AGG - chr5_4:46660863-46660882 Msa0854300:intron 60.0%
!! GCCTATGGTGCTGCAATGGC+AGG + chr5_4:46660867-46660886 None:intergenic 60.0%
!! TGCGGCCTATGGTGCTGCAA+TGG + chr5_4:46660871-46660890 None:intergenic 60.0%
TCGTGGGCCATCGACAACAC+CGG - chr5_4:46660937-46660956 Msa0854300:intron 60.0%
ACAAAGGGCTCATGCGAGGG+TGG - chr5_4:46661924-46661943 Msa0854300:CDS 60.0%
CAAAGGGCTCATGCGAGGGT+GGG - chr5_4:46661925-46661944 Msa0854300:CDS 60.0%
! TCATGCGAGGGTGGGTTCCA+AGG - chr5_4:46661933-46661952 Msa0854300:CDS 60.0%
! AGACCAGCAGATAGCGGCTG+CGG + chr5_4:46661975-46661994 None:intergenic 60.0%
CGACGGCAGAATCGTGACGG+AGG + chr5_4:46657750-46657769 None:intergenic 65.0%
!! GGTATCGGCGCAATGGGCCT+TGG - chr5_4:46658139-46658158 Msa0854300:CDS 65.0%
! GACGTTGGCCGCGCTGGTAA+TGG + chr5_4:46659637-46659656 None:intergenic 65.0%
! GACCAGCAGATAGCGGCTGC+GGG + chr5_4:46661974-46661993 None:intergenic 65.0%
! TCGTGAGTTGACGGCGGCGC+CGG + chr5_4:46657929-46657948 None:intergenic 70.0%
GCGCCGCCGTCAACTCACGA+CGG - chr5_4:46657929-46657948 Msa0854300:three_prime_UTR 70.0%
GGCCCGTCCGCCTTATACCG+CGG - chr5_4:46658118-46658137 Msa0854300:CDS 70.0%
! GGCCCATTGCGCCGATACCG+CGG + chr5_4:46658138-46658157 None:intergenic 70.0%
!! AATGGGCCTTGGCGCCGGTC+CGG - chr5_4:46658150-46658169 Msa0854300:CDS 70.0%
CTCCCGCAGCCGCTATCTGC+TGG - chr5_4:46661969-46661988 Msa0854300:CDS 70.0%
GGCGCAATGGGCCTTGGCGC+CGG - chr5_4:46658145-46658164 Msa0854300:CDS 75.0%
CAACCCACCAGCAGCCGCCC+CGG + chr5_4:46658551-46658570 None:intergenic 75.0%
!! GCGCCTCCTGGGTAGCGGAC+AGG + chr5_4:46659570-46659589 None:intergenic 75.0%
GAAGCGGACGTTGGCCGCGC+TGG + chr5_4:46659643-46659662 None:intergenic 75.0%
! GCTACTGCCGGGGCGGCTGC+TGG - chr5_4:46658541-46658560 Msa0854300:intron 80.0%
! ACTGCCGGGGCGGCTGCTGG+TGG - chr5_4:46658544-46658563 Msa0854300:intron 80.0%
! CTGCCGGGGCGGCTGCTGGT+GGG - chr5_4:46658545-46658564 Msa0854300:intron 80.0%
!! CGGGGCGGCTGCTGGTGGGT+TGG - chr5_4:46658549-46658568 Msa0854300:intron 80.0%
! CGTGGGCCGGACCGGCGCCA+AGG + chr5_4:46658159-46658178 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46657631 46662513 46657631 ID=Msa0854300;Name=Msa0854300
chr5_4 mRNA 46657631 46662513 46657631 ID=Msa0854300-mRNA-1;Parent=Msa0854300;Name=Msa0854300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=229|1|1|1|1|1|2|450|326
chr5_4 exon 46657631 46658296 46657631 ID=Msa0854300-mRNA-1:exon:14781;Parent=Msa0854300-mRNA-1
chr5_4 exon 46661520 46662513 46661520 ID=Msa0854300-mRNA-1:exon:14780;Parent=Msa0854300-mRNA-1
chr5_4 five_prime_UTR 46662285 46662513 46662285 ID=Msa0854300-mRNA-1:five_prime_utr;Parent=Msa0854300-mRNA-1
chr5_4 CDS 46661520 46662284 46661520 ID=Msa0854300-mRNA-1:cds;Parent=Msa0854300-mRNA-1
chr5_4 CDS 46658081 46658296 46658081 ID=Msa0854300-mRNA-1:cds;Parent=Msa0854300-mRNA-1
chr5_4 three_prime_UTR 46657631 46658080 46657631 ID=Msa0854300-mRNA-1:three_prime_utr;Parent=Msa0854300-mRNA-1
Gene Sequence

>Msa0854300

ATGGCCACAGAAGCAAGACCAAAGTTTCAAAACCCAGATTACCGACCCGATTTCACAAACTTAACGCCGGCGCCGCCGTCAACTCACGACGGTCTTCACTACTGGCAATTCATGATTTCTGGCTCCATTGCTGGTTGTATCGAACACATGGCAATGTTTCCCGTTGACACCGTTAAAACTCACATGCAAGCCATCACATCTTGTCCAATTAAATCCGTTTCCGTCAGTCAAGCTCTTCGGTCAATCTTAAAATCCGAAGGCCCGTCCGCCTTATACCGCGGTATCGGCGCAATGGGCCTTGGCGCCGGTCCGGCCCACGCTGTTTATTTCTCAGTTTATGAAACCCTTAAAAAGAAATTCTCACATGGAAATGTTAGTGATCATTTTGTTCATGCTGGTTCGGGTGTTTGTGCGACGGTGGCGAGTGACGCAGTGTTTACGCCGATGGATATGGTGAAACAGAGGTTGCAGTTGAGTAATAGTGGTTATAAGGGTGTGTTTGATTGTGTGAAGAGGGTTTTGAGTGAGGAAGGGTTTGGTGCTTTTTATGCTAGTTATAGGACTACTGTTTTGATGAATGCGCCTTTTACTGCTGTGCATTTCGCGACTTATGAAGCTGCGAAAAGAGGGTTGAATGAGATTTCTCCAGAGAGTGTTGATGATGAGAGGTTGATTGTTCATGCTACTGCCGGGGCGGCTGCTGGTGGGTTGGCTGCTGCTGTTACTACGCCGCTTGATGTTGTTAAAACTCAATTGCAATGCCAGGGTGTGTGTGGATGTGATAGGTTCAAAAGTGGTTCCATTGGCGATGTTGTTAAAACAATAGTGAAAAAGGACGGATACAAAGGGCTCATGCGAGGGTGGGTTCCAAGGATGCTCTTTCATGCTCCCGCAGCCGCTATCTGCTGGTCTACATATGAAGCTGGAAAATCCTTTTTCCAAGATTACAACGAGCAGAAAGATTCTGGAACTGTCACCTAA
Protein sequence

>Msa0854300

MATEARPKFQNPDYRPDFTNLTPAPPSTHDGLHYWQFMISGSIAGCIEHMAMFPVDTVKTHMQAITSCPIKSVSVSQALRSILKSEGPSALYRGIGAMGLGAGPAHAVYFSVYETLKKKFSHGNVSDHFVHAGSGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVFDCVKRVLSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLNEISPESVDDERLIVHATAGAAAGGLAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVVKTIVKKDGYKGLMRGWVPRMLFHAPAAAICWSTYEAGKSFFQDYNEQKDSGTVT*