AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427580 MtrunA17_Chr3g0130221 99.415 342 2 0 1 342 1 342 0.0 686
Msa0427580 MtrunA17_Chr3g0104471 62.048 332 114 2 17 336 67 398 1.78e-148 424
Msa0427580 MtrunA17_Chr5g0393851 86.486 74 5 1 264 337 1 69 7.32e-35 122
Msa0427580 MtrunA17_Chr3g0114581 23.432 303 216 6 39 335 14 306 9.60e-16 77.0
Msa0427580 MtrunA17_Chr1g0160071 22.772 303 218 5 39 335 13 305 1.17e-15 77.0
Msa0427580 MtrunA17_Chr2g0317521 23.647 351 238 5 3 337 1 337 4.07e-14 72.4
Msa0427580 MtrunA17_Chr1g0149401 23.611 360 232 9 1 336 1 341 5.03e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427580 AT2G13650.3 78.107 338 69 1 3 340 1 333 0.0 517
Msa0427580 AT2G13650.1 78.107 338 69 1 3 340 1 333 0.0 517
Msa0427580 AT2G13650.7 77.083 288 61 1 3 290 1 283 2.69e-153 432
Msa0427580 AT2G13650.2 77.083 288 61 1 3 290 1 283 2.69e-153 432
Msa0427580 AT2G13650.4 84.332 217 34 0 124 340 28 244 4.02e-126 362
Msa0427580 AT2G13650.5 84.332 217 34 0 124 340 28 244 4.02e-126 362
Msa0427580 AT2G13650.6 82.564 195 34 0 146 340 14 208 5.18e-111 322
Msa0427580 AT1G07290.1 53.177 299 113 3 41 336 79 353 1.02e-100 301
Msa0427580 AT1G21870.1 24.653 288 197 7 39 318 14 289 3.63e-15 75.9
Msa0427580 AT4G32272.1 25.217 345 226 8 10 339 17 344 1.11e-14 74.3
Msa0427580 AT1G77610.1 23.958 288 199 8 39 318 8 283 2.03e-14 73.6
Msa0427580 AT4G32272.2 25.070 359 236 9 2 339 13 359 1.77e-13 71.2
Msa0427580 AT5G19980.1 24.579 297 207 6 45 334 19 305 9.73e-13 68.6

Find 124 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACAACCCTTCCATTTC+TGG 0.079663 3_2:+78263338 None:intergenic
TGTATCTATGTTGAGCCTTC+TGG 0.107830 3_2:-78262866 Msa0427580:CDS
GATCTGTGGTATTTGATTTC+CGG 0.174220 3_2:-78258986 Msa0427580:three_prime_UTR
GATGAACATGATGAAGAAAA+AGG 0.229009 3_2:-78263393 Msa0427580:CDS
GATGACCTTCAGTGGAGTTT+TGG 0.230548 3_2:-78259649 Msa0427580:CDS
TTGAGATCTCTCCCGGATTT+TGG 0.239239 3_2:+78259038 None:intergenic
CAACACTCTTTCTTTGCCTT+TGG 0.245089 3_2:-78259980 Msa0427580:CDS
TGGATATTTCAACTCACTAT+TGG 0.261370 3_2:+78263745 None:intergenic
TTTGCCATCTGCAGTCTTGT+AGG 0.269187 3_2:-78259299 Msa0427580:intron
CTTTAAAGTTCCTACAAGTT+TGG 0.279646 3_2:-78259234 Msa0427580:CDS
AATTCCTTATACTGCTCTTC+AGG 0.279874 3_2:+78259014 None:intergenic
CATAATCAAGCCTTATTATC+TGG 0.283461 3_2:-78263309 Msa0427580:CDS
ATCTGTGGTATTTGATTTCC+GGG 0.298914 3_2:-78258985 Msa0427580:three_prime_UTR
TTCTGAGATTACCTAGCTTT+TGG 0.301861 3_2:-78259677 Msa0427580:CDS
CAGATCATTTCAGCAATAAC+TGG 0.302251 3_2:-78260383 Msa0427580:CDS
TGAAGAAGAAGCACGAGTTT+TGG 0.306390 3_2:-78263806 Msa0427580:five_prime_UTR
CTGTTCGTTTGGATCTAATT+CGG 0.307824 3_2:-78258826 Msa0427580:three_prime_UTR
ATAAGCAAGTCCAGATAATA+AGG 0.308574 3_2:+78263299 None:intergenic
GTATCTATGTTGAGCCTTCT+GGG 0.310178 3_2:-78262865 Msa0427580:CDS
AACACTCTTTCTTTGCCTTT+GGG 0.312536 3_2:-78259979 Msa0427580:CDS
GTTGATTAAAGTCTGGTTTC+CGG 0.328959 3_2:-78262812 Msa0427580:CDS
AATGCAAATTGCAGGGCTTT+TGG 0.330301 3_2:-78259082 Msa0427580:intron
GGATATTTCAACTCACTATT+GGG 0.333571 3_2:+78263746 None:intergenic
CCGGTCAATGTTATATTTGT+TGG 0.334498 3_2:-78262793 Msa0427580:CDS
ATGTGGTTTCTTCATCAAAC+AGG 0.337762 3_2:-78259603 Msa0427580:CDS
GCAAAGCAATATACTAAATC+TGG 0.337794 3_2:-78260036 Msa0427580:CDS
ATTAAACTCATAATCCTTCA+TGG 0.340340 3_2:-78263610 Msa0427580:five_prime_UTR
AAACAGGGGCTACAACTTAC+AGG 0.345308 3_2:-78259587 Msa0427580:intron
AATATCCTTGATGGTGTATC+AGG 0.361970 3_2:-78263208 Msa0427580:intron
AGCACCACGAAGGCAGAGTC+TGG 0.363622 3_2:-78260971 Msa0427580:CDS
ATGAGTTTAATAAAGAGAAT+TGG 0.369852 3_2:+78263622 None:intergenic
CAATCCTGAAGAGCAGTATA+AGG 0.371628 3_2:-78259018 Msa0427580:exon
GCAGAGTTCTCCAAACTTGT+AGG 0.380931 3_2:+78259224 None:intergenic
TTAATCAACCTCCATGTTAG+TGG 0.382334 3_2:+78262826 None:intergenic
TGTTCGTTTGGATCTAATTC+GGG 0.395941 3_2:-78258825 Msa0427580:three_prime_UTR
CAGCCCAGACTCTGCCTTCG+TGG 0.401927 3_2:+78260967 None:intergenic
GTGGATGCAGAATTTCATTT+CGG 0.402301 3_2:-78262896 Msa0427580:intron
GCTTATTGTCTTTCCTCTTG+TGG 0.404397 3_2:-78263282 Msa0427580:CDS
CGAATTAGATCCAAACGAAC+AGG 0.408996 3_2:+78258827 None:intergenic
CTGGGCTGCTCTATTTCTAA+TGG 0.414829 3_2:-78260952 Msa0427580:intron
TGCTAATTACAAGCATGTTT+AGG 0.418078 3_2:-78262768 Msa0427580:intron
AAAGAAAGAGGTTCCAGAAA+TGG 0.421951 3_2:-78263351 Msa0427580:CDS
ATAAAGAGAATTGGATGAAG+AGG 0.424946 3_2:+78263631 None:intergenic
CATGAAAATGAAGTCTTCTT+CGG 0.425537 3_2:-78263418 Msa0427580:CDS
AAGATACCACTCTCAGTTGC+TGG 0.429416 3_2:-78259266 Msa0427580:CDS
CATGGAGGTTGATTAAAGTC+TGG 0.433566 3_2:-78262819 Msa0427580:CDS
TAATGCTGGAATATCCTTGA+TGG 0.436279 3_2:-78263217 Msa0427580:CDS
AGAGAAATATTGAAATTTGA+GGG 0.439146 3_2:+78263656 None:intergenic
AAGAGAAATATTGAAATTTG+AGG 0.439743 3_2:+78263655 None:intergenic
TTCAGGATTGAGATCTCTCC+CGG 0.444271 3_2:+78259031 None:intergenic
CGCTTTGAATCGCGGTGGCG+CGG 0.452831 3_2:+78263459 None:intergenic
CACAAATCACACCTCTCTAA+AGG 0.456138 3_2:+78258889 None:intergenic
ACAAATCACACCTCTCTAAA+GGG 0.461401 3_2:+78258890 None:intergenic
CTAATTCGGGAAGAGTTGCT+TGG 0.470494 3_2:-78258812 Msa0427580:three_prime_UTR
CCTCATTGAAAACAAGCATC+AGG 0.493646 3_2:+78259950 None:intergenic
CCAACAAATATAACATTGAC+CGG 0.496391 3_2:+78262793 None:intergenic
CCGTATCCATGACCCTTCGT+AGG 0.502069 3_2:+78260058 None:intergenic
ACACTCAACACAGGCGGAGC+TGG 0.504574 3_2:-78263498 Msa0427580:five_prime_UTR
TAAAGAGAATTGGATGAAGA+GGG 0.505183 3_2:+78263632 None:intergenic
TTAAACTCATAATCCTTCAT+GGG 0.505292 3_2:-78263609 Msa0427580:five_prime_UTR
TGAACCCAGAAAGAAACAAA+AGG 0.507165 3_2:+78263689 None:intergenic
GAACCCAGAAAGAAACAAAA+GGG 0.507996 3_2:+78263690 None:intergenic
GAAATACATTAATGTGGCTA+TGG 0.516838 3_2:-78261057 Msa0427580:CDS
CCTACGAAGGGTCATGGATA+CGG 0.527759 3_2:-78260058 Msa0427580:CDS
TGGTTAGTGATGACCTTCAG+TGG 0.534587 3_2:-78259657 Msa0427580:CDS
GCCTTGTTTGTTTATGATCG+AGG 0.535945 3_2:+78263579 None:intergenic
GCTGACCCTACGAAGGGTCA+TGG 0.537855 3_2:-78260064 Msa0427580:CDS
GTGAAGTTAGAAGTTCAACC+TGG 0.538327 3_2:-78258962 Msa0427580:three_prime_UTR
CGCGCCACCGCGATTCAAAG+CGG 0.538704 3_2:-78263458 Msa0427580:five_prime_UTR
TTGTAGGAACTTTAAAGAGA+AGG 0.549360 3_2:+78259240 None:intergenic
GATTGCATTGCTAGCAATGG+AGG 0.553491 3_2:-78258790 Msa0427580:three_prime_UTR
AACTAAAATCATTCCACAAG+AGG 0.562641 3_2:+78263269 None:intergenic
CGTATCCATGACCCTTCGTA+GGG 0.564291 3_2:+78260059 None:intergenic
TTTCGCTAGAGCCAAAATCC+GGG 0.569283 3_2:-78259049 Msa0427580:CDS
GTTGAAATATCCACCAAAGT+TGG 0.570846 3_2:-78263735 Msa0427580:five_prime_UTR
AAAGAGGTTCCAGAAATGGA+AGG 0.572735 3_2:-78263347 Msa0427580:CDS
TGACGACACCTCAAAATCCC+AGG 0.575984 3_2:+78258944 None:intergenic
ACACAGGCGGAGCTGGTGGT+CGG 0.576955 3_2:-78263491 Msa0427580:five_prime_UTR
AATTGCGCCGCTTTGAATCG+CGG 0.578945 3_2:+78263451 None:intergenic
AACTATCTCACCCTTTAGAG+AGG 0.578986 3_2:-78258900 Msa0427580:three_prime_UTR
GTCATCACTAACCAAAAGCT+AGG 0.580842 3_2:+78259666 None:intergenic
TTTCAACTGAACCACTAACA+TGG 0.581249 3_2:-78262837 Msa0427580:CDS
TTGGATTGCATTGCTAGCAA+TGG 0.583211 3_2:-78258793 Msa0427580:three_prime_UTR
CTCAACACAGGCGGAGCTGG+TGG 0.585956 3_2:-78263495 Msa0427580:five_prime_UTR
TGTGGTTTCTTCATCAAACA+GGG 0.587936 3_2:-78259602 Msa0427580:CDS
TCCTCGATCATAAACAAACA+AGG 0.590957 3_2:-78263580 Msa0427580:five_prime_UTR
GCACCACGAAGGCAGAGTCT+GGG 0.591892 3_2:-78260970 Msa0427580:CDS
GTTCATGATTACTTCTCTGA+GGG 0.593247 3_2:-78258863 Msa0427580:three_prime_UTR
CGTCAAAGAGATGATTGTAT+CGG 0.595188 3_2:-78258926 Msa0427580:three_prime_UTR
ATCATTTCAGCAATAACTGG+AGG 0.613231 3_2:-78260380 Msa0427580:CDS
CAGTTTGAAATACATTAATG+TGG 0.616131 3_2:-78261063 Msa0427580:CDS
TGCGCCGCTTTGAATCGCGG+TGG 0.616443 3_2:+78263454 None:intergenic
GAATTAGATCCAAACGAACA+GGG 0.618840 3_2:+78258828 None:intergenic
AGTTCATGATTACTTCTCTG+AGG 0.619402 3_2:-78258864 Msa0427580:three_prime_UTR
TCATTTCAGCAATAACTGGA+GGG 0.623711 3_2:-78260379 Msa0427580:CDS
AAGCTAGGTAATCTCAGAAG+TGG 0.624340 3_2:+78259681 None:intergenic
AGGATGCCAGCAACTGAGAG+TGG 0.626159 3_2:+78259260 None:intergenic
TATTGCAGCTGACCCTACGA+AGG 0.633946 3_2:-78260071 Msa0427580:intron
ATATGTTGCATCTTGAGACA+AGG 0.635225 3_2:-78258643 Msa0427580:three_prime_UTR
TATGTTGCATCTTGAGACAA+GGG 0.637981 3_2:-78258642 Msa0427580:three_prime_UTR
AAATTTAAATGAGTTTACGA+TGG 0.641617 3_2:-78260013 Msa0427580:CDS
TAGACCCAAAACTCCACTGA+AGG 0.641650 3_2:+78259644 None:intergenic
TTAATGCAACTGGCTATGTG+TGG 0.643415 3_2:-78260340 Msa0427580:CDS
AATTAGATCCAAACGAACAG+GGG 0.648320 3_2:+78258829 None:intergenic
AAGAGGTTCCAGAAATGGAA+GGG 0.648638 3_2:-78263346 Msa0427580:CDS
AATTACCTGATACACCATCA+AGG 0.651962 3_2:+78263203 None:intergenic
TGAAGTTAGAAGTTCAACCT+GGG 0.655445 3_2:-78258961 Msa0427580:three_prime_UTR
CAGTTGAAACTAAACCCAGA+AGG 0.657499 3_2:+78262851 None:intergenic
CAATTAGCTTCACCTCCATG+TGG 0.658205 3_2:-78259620 Msa0427580:CDS
ATTGCAGCTGACCCTACGAA+GGG 0.668006 3_2:-78260070 Msa0427580:intron
GAACAAGTACATTTCACCAA+CGG 0.669904 3_2:+78260998 None:intergenic
AGCATCAGGAAAATTCCCAA+AGG 0.675180 3_2:+78259964 None:intergenic
AACCCAGAAAGAAACAAAAG+GGG 0.678664 3_2:+78263691 None:intergenic
ACGAATGTCATAACTGCCGT+TGG 0.688649 3_2:-78261014 Msa0427580:CDS
TTGAACTTCTAACTTCACCC+CGG 0.689216 3_2:+78258967 None:intergenic
CATCGTACTACACTCAACAC+AGG 0.696953 3_2:-78263507 Msa0427580:five_prime_UTR
TGTTTGATGAAGAAACCACA+TGG 0.697962 3_2:+78259605 None:intergenic
GTGGTTTCTTCATCAAACAG+GGG 0.705100 3_2:-78259601 Msa0427580:CDS
CAACTGAACCACTAACATGG+AGG 0.707867 3_2:-78262834 Msa0427580:CDS
CGTACTACACTCAACACAGG+CGG 0.711494 3_2:-78263504 Msa0427580:five_prime_UTR
TTGTTCAGTAAGCACCACGA+AGG 0.728813 3_2:-78260981 Msa0427580:CDS
TCTGTGGTATTTGATTTCCG+GGG 0.753153 3_2:-78258984 Msa0427580:three_prime_UTR
AAATTGTCAAGTGATACATG+AGG 0.779215 3_2:+78258706 None:intergenic
TTGATGAAGAAACCACATGG+AGG 0.813768 3_2:+78259608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTACTATAAATATTTTTT+AGG - chr3_2:78261921-78261940 Msa0427580:intron 10.0%
!! AATCTAACATAAAAAAAAAA+AGG + chr3_2:78263709-78263728 None:intergenic 10.0%
!!! TATTTTCATATGATAATGTT+TGG - chr3_2:78259850-78259869 Msa0427580:intron 15.0%
!! CAAAAATATTTATGTTTAAG+AGG + chr3_2:78260511-78260530 None:intergenic 15.0%
!!! AAACATAAATATTTTTGTGA+CGG - chr3_2:78260514-78260533 Msa0427580:intron 15.0%
!! ATTATTTATGATAAGATACT+AGG - chr3_2:78260880-78260899 Msa0427580:intron 15.0%
!! TTATTTATGATAAGATACTA+GGG - chr3_2:78260881-78260900 Msa0427580:intron 15.0%
!!! CTTTTCTAATTATTGTTTAT+TGG - chr3_2:78261004-78261023 Msa0427580:CDS 15.0%
!!! ATTTTATTTCTCTACTTTTT+AGG - chr3_2:78261720-78261739 Msa0427580:intron 15.0%
!!! ATAATTTTTCTGATATAACA+CGG + chr3_2:78263108-78263127 None:intergenic 15.0%
!! AGAGAAATATTGAAATTTGA+GGG + chr3_2:78258804-78258823 None:intergenic 20.0%
!! AAGAGAAATATTGAAATTTG+AGG + chr3_2:78258805-78258824 None:intergenic 20.0%
!! ATGAGTTTAATAAAGAGAAT+TGG + chr3_2:78258838-78258857 None:intergenic 20.0%
!!! ATAGTTTAATGATGATGTAA+AGG - chr3_2:78259527-78259546 Msa0427580:intron 20.0%
!!! TTAATTTGTTTATCCAAACA+AGG - chr3_2:78260112-78260131 Msa0427580:intron 20.0%
!! TCTCAAACTTAATAACTAAT+AGG + chr3_2:78260138-78260157 None:intergenic 20.0%
!!! TTAAAATGAAAGTACAATAG+AGG - chr3_2:78260408-78260427 Msa0427580:intron 20.0%
!!! TAAAATGAAAGTACAATAGA+GGG - chr3_2:78260409-78260428 Msa0427580:intron 20.0%
!! TAAAACCAAATCCATATTAA+TGG + chr3_2:78260842-78260861 None:intergenic 20.0%
!! TCTAATTATTGTTTATTGGT+AGG - chr3_2:78261008-78261027 Msa0427580:CDS 20.0%
!!! AATAATTTTCTTTTTGCTGA+TGG - chr3_2:78261066-78261085 Msa0427580:intron 20.0%
!!! ATAATTTTCTTTTTGCTGAT+GGG - chr3_2:78261067-78261086 Msa0427580:intron 20.0%
!! TTAAAAAAAGTAGTAGTATG+CGG - chr3_2:78261109-78261128 Msa0427580:intron 20.0%
!!! TTTTTAGGTTACATAAATGA+TGG - chr3_2:78261735-78261754 Msa0427580:intron 20.0%
!! ATTTAAAAACATGAGATGTT+TGG + chr3_2:78262022-78262041 None:intergenic 20.0%
!! AAATTTAAATGAGTTTACGA+TGG - chr3_2:78262444-78262463 Msa0427580:intron 20.0%
!! TTGCAAAACGAAAAAATATA+GGG + chr3_2:78262716-78262735 None:intergenic 20.0%
!! TTTGCAAAACGAAAAAATAT+AGG + chr3_2:78262717-78262736 None:intergenic 20.0%
!! ATTAATGTATTTCAATTGAC+AGG - chr3_2:78262753-78262772 Msa0427580:intron 20.0%
!! AAATTAAATTTGTCGCATTT+AGG + chr3_2:78262953-78262972 None:intergenic 20.0%
!! TCCAATTTAATATATTGATC+GGG + chr3_2:78262987-78263006 None:intergenic 20.0%
!! GTCCAATTTAATATATTGAT+CGG + chr3_2:78262988-78263007 None:intergenic 20.0%
! ATTAAACTCATAATCCTTCA+TGG - chr3_2:78258847-78258866 Msa0427580:three_prime_UTR 25.0%
! TTAAACTCATAATCCTTCAT+GGG - chr3_2:78258848-78258867 Msa0427580:three_prime_UTR 25.0%
! ATGAACATGATGAAGAAAAA+GGG - chr3_2:78259065-78259084 Msa0427580:CDS 25.0%
!!! TCTAGTTATGATTTTAATGC+TGG - chr3_2:78259226-78259245 Msa0427580:CDS 25.0%
! AGAAATAGCTTATACATAAG+TGG + chr3_2:78259368-78259387 None:intergenic 25.0%
!! TCATATGATAATGTTTGGAT+TGG - chr3_2:78259855-78259874 Msa0427580:intron 25.0%
!! TAGTTATTAAGTTTGAGATG+TGG - chr3_2:78260140-78260159 Msa0427580:intron 25.0%
!! AAAATGAAAGTACAATAGAG+GGG - chr3_2:78260410-78260429 Msa0427580:intron 25.0%
! TCTTGCTTAAATTCTACATT+TGG + chr3_2:78260440-78260459 None:intergenic 25.0%
! TTTAAGCAAGATAGATGAAA+TGG - chr3_2:78260449-78260468 Msa0427580:intron 25.0%
!! TAATTTTCTATGAGATTGAG+TGG - chr3_2:78260554-78260573 Msa0427580:intron 25.0%
!! AAAGCATTAAAGAGAAGTTA+GGG - chr3_2:78260668-78260687 Msa0427580:intron 25.0%
! GTTCAATAGTTAGAGATAAA+AGG - chr3_2:78260785-78260804 Msa0427580:intron 25.0%
! ATTAGATTTCAAAAAACTGG+AGG + chr3_2:78260968-78260987 None:intergenic 25.0%
! GAGATTAGATTTCAAAAAAC+TGG + chr3_2:78260971-78260990 None:intergenic 25.0%
!!! GAAACACTATTCCTATTTTT+GGG - chr3_2:78261208-78261227 Msa0427580:intron 25.0%
!!! AAACACTATTCCTATTTTTG+GGG - chr3_2:78261209-78261228 Msa0427580:intron 25.0%
!! ATTTTTCCAGTCTCAATTTA+TGG - chr3_2:78261295-78261314 Msa0427580:intron 25.0%
!! CAGTTTGAAATACATTAATG+TGG - chr3_2:78261394-78261413 Msa0427580:intron 25.0%
!!! TGTTTTACCTTTTTAAGTTC+TGG - chr3_2:78261608-78261627 Msa0427580:intron 25.0%
! AAACAAACCAGAACTTAAAA+AGG + chr3_2:78261618-78261637 None:intergenic 25.0%
! TACAATAAAGCAGTATATGT+TGG + chr3_2:78261671-78261690 None:intergenic 25.0%
! GAGAAATAAAATATTTCCCA+CGG + chr3_2:78261712-78261731 None:intergenic 25.0%
! CAACTATATCATACTCAATT+TGG + chr3_2:78261823-78261842 None:intergenic 25.0%
! TCCCGATCAATATATTAAAT+TGG - chr3_2:78262983-78263002 Msa0427580:intron 25.0%
GGATATTTCAACTCACTATT+GGG + chr3_2:78258714-78258733 None:intergenic 30.0%
TGGATATTTCAACTCACTAT+TGG + chr3_2:78258715-78258734 None:intergenic 30.0%
!! TTGAAAAAAGGTACCAACTT+TGG + chr3_2:78258738-78258757 None:intergenic 30.0%
TAAAGAGAATTGGATGAAGA+GGG + chr3_2:78258828-78258847 None:intergenic 30.0%
ATAAAGAGAATTGGATGAAG+AGG + chr3_2:78258829-78258848 None:intergenic 30.0%
CATGAAAATGAAGTCTTCTT+CGG - chr3_2:78259039-78259058 Msa0427580:CDS 30.0%
GATGAACATGATGAAGAAAA+AGG - chr3_2:78259064-78259083 Msa0427580:CDS 30.0%
TTGGAAAAAAGCAAAGAAAG+AGG - chr3_2:78259094-78259113 Msa0427580:intron 30.0%
!! CATAATCAAGCCTTATTATC+TGG - chr3_2:78259148-78259167 Msa0427580:intron 30.0%
ATAAGCAAGTCCAGATAATA+AGG + chr3_2:78259161-78259180 None:intergenic 30.0%
AACTAAAATCATTCCACAAG+AGG + chr3_2:78259191-78259210 None:intergenic 30.0%
AGAAGAAAACACAGAAAAAG+GGG + chr3_2:78259293-78259312 None:intergenic 30.0%
GAGAAGAAAACACAGAAAAA+GGG + chr3_2:78259294-78259313 None:intergenic 30.0%
AGAGAAGAAAACACAGAAAA+AGG + chr3_2:78259295-78259314 None:intergenic 30.0%
! TGTGTTTTCTTCTCTAACTT+AGG - chr3_2:78259300-78259319 Msa0427580:intron 30.0%
AATAAGCCATTTATCCAAAC+AGG + chr3_2:78259327-78259346 None:intergenic 30.0%
AGCTTATACATAAGTGGTTA+TGG + chr3_2:78259362-78259381 None:intergenic 30.0%
TCAAATAAGTCAATCCAATC+AGG - chr3_2:78259491-78259510 Msa0427580:intron 30.0%
CATTAAACTATACAGATCCA+AGG + chr3_2:78259518-78259537 None:intergenic 30.0%
! TGTAAAGGTTCATACTTTTG+TGG - chr3_2:78259542-78259561 Msa0427580:intron 30.0%
CCAACAAATATAACATTGAC+CGG + chr3_2:78259667-78259686 None:intergenic 30.0%
TGCTAATTACAAGCATGTTT+AGG - chr3_2:78259689-78259708 Msa0427580:intron 30.0%
! GTATGAAGTCTTTAACTTTG+AGG - chr3_2:78259711-78259730 Msa0427580:intron 30.0%
ATATGTCAATCATCTTCCAA+AGG - chr3_2:78259767-78259786 Msa0427580:intron 30.0%
TATGTCAATCATCTTCCAAA+GGG - chr3_2:78259768-78259787 Msa0427580:intron 30.0%
! ACTGTTTTCACAAGATATCT+TGG + chr3_2:78259992-78260011 None:intergenic 30.0%
!! AATAACTAATAGGCCTTGTT+TGG + chr3_2:78260128-78260147 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG + chr3_2:78260246-78260265 None:intergenic 30.0%
AAATTGTCAGACTTGTAATC+TGG + chr3_2:78260246-78260265 None:intergenic 30.0%
! AAATGAAAGTACAATAGAGG+GGG - chr3_2:78260411-78260430 Msa0427580:intron 30.0%
!! GAAAGCATTAAAGAGAAGTT+AGG - chr3_2:78260667-78260686 Msa0427580:intron 30.0%
CAATAGTTAGAGATAAAAGG+AGG - chr3_2:78260788-78260807 Msa0427580:intron 30.0%
CCAAATCCATATTAATGGTT+TGG + chr3_2:78260837-78260856 None:intergenic 30.0%
CCAAACCATTAATATGGATT+TGG - chr3_2:78260834-78260853 Msa0427580:intron 30.0%
TTTGATTAATTTCCCCATCA+TGG - chr3_2:78260909-78260928 Msa0427580:intron 30.0%
ATTGTTTATTGGTAGGTACT+AGG - chr3_2:78261015-78261034 Msa0427580:CDS 30.0%
GATTCCATTTATGAGTATTC+TGG - chr3_2:78261144-78261163 Msa0427580:intron 30.0%
TACACCAGAATACTCATAAA+TGG + chr3_2:78261151-78261170 None:intergenic 30.0%
AAAATAGGAATAGTGTTTCC+TGG + chr3_2:78261207-78261226 None:intergenic 30.0%
! GGAAACACTATTCCTATTTT+TGG - chr3_2:78261207-78261226 Msa0427580:intron 30.0%
GTAAATCCATAAATTGAGAC+TGG + chr3_2:78261304-78261323 None:intergenic 30.0%
GAAATACATTAATGTGGCTA+TGG - chr3_2:78261400-78261419 Msa0427580:intron 30.0%
ACATTATTCCACATCAAAGT+GGG + chr3_2:78261581-78261600 None:intergenic 30.0%
TACATTATTCCACATCAAAG+TGG + chr3_2:78261582-78261601 None:intergenic 30.0%
! TGCTTTATTGTAGTTTCCAA+AGG - chr3_2:78261679-78261698 Msa0427580:intron 30.0%
CTAAAACACCAATTCAACTT+CGG + chr3_2:78261761-78261780 None:intergenic 30.0%
TAACAATGAAGAGTTTCAAG+TGG + chr3_2:78261957-78261976 None:intergenic 30.0%
GTAAAGCACATATCCAAAAT+TGG + chr3_2:78262000-78262019 None:intergenic 30.0%
!!! ATTTTATTTGAAGAGCATCC+AGG + chr3_2:78262255-78262274 None:intergenic 30.0%
TTTACACTTCTTAACAGATG+AGG - chr3_2:78262274-78262293 Msa0427580:intron 30.0%
TTAACAGATGAGGTTTAGTT+TGG - chr3_2:78262284-78262303 Msa0427580:intron 30.0%
GCAAAGCAATATACTAAATC+TGG - chr3_2:78262421-78262440 Msa0427580:intron 30.0%
TGATTTCACAGACAAAATGT+GGG + chr3_2:78262563-78262582 None:intergenic 30.0%
ATGATTTCACAGACAAAATG+TGG + chr3_2:78262564-78262583 None:intergenic 30.0%
GTCTGTGAAATCATTATATG+AGG - chr3_2:78262570-78262589 Msa0427580:intron 30.0%
! ACAAACAAAAAGCACATTTC+TGG + chr3_2:78262664-78262683 None:intergenic 30.0%
TTTATCTGAAGAGCCATAAT+TGG + chr3_2:78262910-78262929 None:intergenic 30.0%
ATTTAATGATGCATACACCA+CGG - chr3_2:78263023-78263042 Msa0427580:intron 30.0%
! TTGTAGGAACTTTAAAGAGA+AGG + chr3_2:78263220-78263239 None:intergenic 30.0%
!! CTTTAAAGTTCCTACAAGTT+TGG - chr3_2:78263223-78263242 Msa0427580:CDS 30.0%
! AACTCTGCTAGCATTTTATT+TGG - chr3_2:78263248-78263267 Msa0427580:CDS 30.0%
ACAAGTTTGTGTTACATTCT+TGG - chr3_2:78263334-78263353 Msa0427580:CDS 30.0%
! TAAGGAATTTTTCTGATCTG+TGG - chr3_2:78263457-78263476 Msa0427580:five_prime_UTR 30.0%
AAATTGTCAAGTGATACATG+AGG + chr3_2:78263754-78263773 None:intergenic 30.0%
GTTGAAATATCCACCAAAGT+TGG - chr3_2:78258722-78258741 Msa0427580:three_prime_UTR 35.0%
!! AAAAAAGGTACCAACTTTGG+TGG + chr3_2:78258735-78258754 None:intergenic 35.0%
!! GGGGTTCTGAATTTGAAAAA+AGG + chr3_2:78258750-78258769 None:intergenic 35.0%
!! AACCCCTTTTGTTTCTTTCT+GGG - chr3_2:78258764-78258783 Msa0427580:three_prime_UTR 35.0%
AACCCAGAAAGAAACAAAAG+GGG + chr3_2:78258769-78258788 None:intergenic 35.0%
GAACCCAGAAAGAAACAAAA+GGG + chr3_2:78258770-78258789 None:intergenic 35.0%
TGAACCCAGAAAGAAACAAA+AGG + chr3_2:78258771-78258790 None:intergenic 35.0%
TCCTCGATCATAAACAAACA+AGG - chr3_2:78258877-78258896 Msa0427580:three_prime_UTR 35.0%
TGAAGAAAAAGGGAAGTTGT+TGG - chr3_2:78259075-78259094 Msa0427580:intron 35.0%
AAAGAAAGAGGTTCCAGAAA+TGG - chr3_2:78259106-78259125 Msa0427580:intron 35.0%
TAATGCTGGAATATCCTTGA+TGG - chr3_2:78259240-78259259 Msa0427580:CDS 35.0%
!! AATATCCTTGATGGTGTATC+AGG - chr3_2:78259249-78259268 Msa0427580:CDS 35.0%
AATTACCTGATACACCATCA+AGG + chr3_2:78259257-78259276 None:intergenic 35.0%
TTAGGTCCTGTTTGGATAAA+TGG - chr3_2:78259318-78259337 Msa0427580:intron 35.0%
GTGGATGCAGAATTTCATTT+CGG - chr3_2:78259561-78259580 Msa0427580:intron 35.0%
TTTCAACTGAACCACTAACA+TGG - chr3_2:78259620-78259639 Msa0427580:CDS 35.0%
TTAATCAACCTCCATGTTAG+TGG + chr3_2:78259634-78259653 None:intergenic 35.0%
! GTTGATTAAAGTCTGGTTTC+CGG - chr3_2:78259645-78259664 Msa0427580:CDS 35.0%
CCGGTCAATGTTATATTTGT+TGG - chr3_2:78259664-78259683 Msa0427580:CDS 35.0%
ATGTCAATCATCTTCCAAAG+GGG - chr3_2:78259769-78259788 Msa0427580:intron 35.0%
ACATGTTCATAAGCTGTGTT+TGG - chr3_2:78259948-78259967 Msa0427580:CDS 35.0%
GTGGAGATAACACACAATTT+CGG - chr3_2:78260159-78260178 Msa0427580:intron 35.0%
ATAACACACAATTTCGGAAG+TGG - chr3_2:78260165-78260184 Msa0427580:intron 35.0%
! TGATGTATTTTGTGACAGAG+AGG - chr3_2:78260483-78260502 Msa0427580:intron 35.0%
! AGAGTATTACAGTAGAAGAG+TGG - chr3_2:78260616-78260635 Msa0427580:intron 35.0%
GAGTATTACAGTAGAAGAGT+GGG - chr3_2:78260617-78260636 Msa0427580:intron 35.0%
AATGATAAGAGTCTCAGCTT+CGG - chr3_2:78260696-78260715 Msa0427580:intron 35.0%
AATTTCCCCATCATGGAAAA+TGG - chr3_2:78260916-78260935 Msa0427580:intron 35.0%
GAACAAGTACATTTCACCAA+CGG + chr3_2:78261462-78261481 None:intergenic 35.0%
ATTATTCCACATCAAAGTGG+GGG + chr3_2:78261579-78261598 None:intergenic 35.0%
CATTATTCCACATCAAAGTG+GGG + chr3_2:78261580-78261599 None:intergenic 35.0%
!! CGAAGTTGAATTGGTGTTTT+AGG - chr3_2:78261759-78261778 Msa0427580:intron 35.0%
ATATAGTTGCGAGACAGTTA+CGG - chr3_2:78261834-78261853 Msa0427580:intron 35.0%
TTGATGTTTGGGAATACTCA+GGG - chr3_2:78261857-78261876 Msa0427580:intron 35.0%
! ACATATCCAAAATTGGTGCT+TGG + chr3_2:78261993-78262012 None:intergenic 35.0%
GAAATGATCTGCAAGTGAAA+GGG + chr3_2:78262065-78262084 None:intergenic 35.0%
TGAAATGATCTGCAAGTGAA+AGG + chr3_2:78262066-78262085 None:intergenic 35.0%
CAGATCATTTCAGCAATAAC+TGG - chr3_2:78262074-78262093 Msa0427580:intron 35.0%
ATCATTTCAGCAATAACTGG+AGG - chr3_2:78262077-78262096 Msa0427580:intron 35.0%
TCATTTCAGCAATAACTGGA+GGG - chr3_2:78262078-78262097 Msa0427580:intron 35.0%
! GATCTCTCTTTTAATGCAAC+TGG - chr3_2:78262107-78262126 Msa0427580:intron 35.0%
AACACTCTTTCTTTGCCTTT+GGG - chr3_2:78262478-78262497 Msa0427580:intron 35.0%
!!! TTCTGAGATTACCTAGCTTT+TGG - chr3_2:78262780-78262799 Msa0427580:CDS 35.0%
TGTTTGATGAAGAAACCACA+TGG + chr3_2:78262855-78262874 None:intergenic 35.0%
ATGTGGTTTCTTCATCAAAC+AGG - chr3_2:78262854-78262873 Msa0427580:CDS 35.0%
TGTGGTTTCTTCATCAAACA+GGG - chr3_2:78262855-78262874 Msa0427580:CDS 35.0%
GTGGTCAGAAATTCCAATTA+TGG - chr3_2:78262894-78262913 Msa0427580:intron 35.0%
AATTGGACTTCGTGACTAAT+AGG - chr3_2:78263000-78263019 Msa0427580:intron 35.0%
AAGGTAGAAATGCAAATTGC+AGG - chr3_2:78263367-78263386 Msa0427580:CDS 35.0%
AGGTAGAAATGCAAATTGCA+GGG - chr3_2:78263368-78263387 Msa0427580:CDS 35.0%
AATTCCTTATACTGCTCTTC+AGG + chr3_2:78263446-78263465 None:intergenic 35.0%
! GATCTGTGGTATTTGATTTC+CGG - chr3_2:78263471-78263490 Msa0427580:five_prime_UTR 35.0%
! ATCTGTGGTATTTGATTTCC+GGG - chr3_2:78263472-78263491 Msa0427580:five_prime_UTR 35.0%
TGAAGTTAGAAGTTCAACCT+GGG - chr3_2:78263496-78263515 Msa0427580:five_prime_UTR 35.0%
CGTCAAAGAGATGATTGTAT+CGG - chr3_2:78263531-78263550 Msa0427580:five_prime_UTR 35.0%
ACAAATCACACCTCTCTAAA+GGG + chr3_2:78263570-78263589 None:intergenic 35.0%
AGTTCATGATTACTTCTCTG+AGG - chr3_2:78263593-78263612 Msa0427580:five_prime_UTR 35.0%
GTTCATGATTACTTCTCTGA+GGG - chr3_2:78263594-78263613 Msa0427580:five_prime_UTR 35.0%
AATTAGATCCAAACGAACAG+GGG + chr3_2:78263631-78263650 None:intergenic 35.0%
GAATTAGATCCAAACGAACA+GGG + chr3_2:78263632-78263651 None:intergenic 35.0%
CTGTTCGTTTGGATCTAATT+CGG - chr3_2:78263631-78263650 Msa0427580:five_prime_UTR 35.0%
TGTTCGTTTGGATCTAATTC+GGG - chr3_2:78263632-78263651 Msa0427580:five_prime_UTR 35.0%
ATATGTTGCATCTTGAGACA+AGG - chr3_2:78263814-78263833 Msa0427580:five_prime_UTR 35.0%
TATGTTGCATCTTGAGACAA+GGG - chr3_2:78263815-78263834 Msa0427580:five_prime_UTR 35.0%
!! TGAAGAAGAAGCACGAGTTT+TGG - chr3_2:78258651-78258670 Msa0427580:three_prime_UTR 40.0%
!! GAACCCCTTTTGTTTCTTTC+TGG - chr3_2:78258763-78258782 Msa0427580:three_prime_UTR 40.0%
!! GCCTTGTTTGTTTATGATCG+AGG + chr3_2:78258881-78258900 None:intergenic 40.0%
AAAGAGGTTCCAGAAATGGA+AGG - chr3_2:78259110-78259129 Msa0427580:intron 40.0%
AAGAGGTTCCAGAAATGGAA+GGG - chr3_2:78259111-78259130 Msa0427580:intron 40.0%
AACAACAACCCTTCCATTTC+TGG + chr3_2:78259122-78259141 None:intergenic 40.0%
GCTTATTGTCTTTCCTCTTG+TGG - chr3_2:78259175-78259194 Msa0427580:intron 40.0%
TCTCTAACTTAGGTCCTGTT+TGG - chr3_2:78259310-78259329 Msa0427580:intron 40.0%
! AGCTGCTTTCGTAAGTTATC+TGG - chr3_2:78259434-78259453 Msa0427580:intron 40.0%
! GCTGCTTTCGTAAGTTATCT+GGG - chr3_2:78259435-78259454 Msa0427580:intron 40.0%
TGTATCTATGTTGAGCCTTC+TGG - chr3_2:78259591-78259610 Msa0427580:CDS 40.0%
GTATCTATGTTGAGCCTTCT+GGG - chr3_2:78259592-78259611 Msa0427580:CDS 40.0%
CAGTTGAAACTAAACCCAGA+AGG + chr3_2:78259609-78259628 None:intergenic 40.0%
! CATGGAGGTTGATTAAAGTC+TGG - chr3_2:78259638-78259657 Msa0427580:CDS 40.0%
! AAAGTGAAGCACCTGTAAGA+TGG - chr3_2:78260744-78260763 Msa0427580:intron 40.0%
! AAGTGAAGCACCTGTAAGAT+GGG - chr3_2:78260745-78260764 Msa0427580:intron 40.0%
CTATTGAACATGCTCCAACT+AGG + chr3_2:78260774-78260793 None:intergenic 40.0%
TTAGAGATAAAAGGAGGCCA+AGG - chr3_2:78260794-78260813 Msa0427580:intron 40.0%
! CCATATTAATGGTTTGGCCA+TGG + chr3_2:78260831-78260850 None:intergenic 40.0%
CCATGGCCAAACCATTAATA+TGG - chr3_2:78260828-78260847 Msa0427580:intron 40.0%
!! CAAAGCCATTTTCCATGATG+GGG + chr3_2:78260924-78260943 None:intergenic 40.0%
!! CCAAAGCCATTTTCCATGAT+GGG + chr3_2:78260925-78260944 None:intergenic 40.0%
!! ACCAAAGCCATTTTCCATGA+TGG + chr3_2:78260926-78260945 None:intergenic 40.0%
CTTTATGCTGATATTCGTCC+AGG - chr3_2:78261186-78261205 Msa0427580:intron 40.0%
TTGCTTACATCTCCTACAAC+CGG - chr3_2:78261637-78261656 Msa0427580:intron 40.0%
AATGATGGCCGAAGTTGAAT+TGG - chr3_2:78261750-78261769 Msa0427580:intron 40.0%
! AGACAGTTACGGTTGATGTT+TGG - chr3_2:78261845-78261864 Msa0427580:intron 40.0%
! GACAGTTACGGTTGATGTTT+GGG - chr3_2:78261846-78261865 Msa0427580:intron 40.0%
GTTGATGTTTGGGAATACTC+AGG - chr3_2:78261856-78261875 Msa0427580:intron 40.0%
! CTTGAACCAAGCACCAATTT+TGG - chr3_2:78261984-78262003 Msa0427580:intron 40.0%
TTAATGCAACTGGCTATGTG+TGG - chr3_2:78262117-78262136 Msa0427580:intron 40.0%
!! AGTTGAGTGTGCTGATTAGT+TGG - chr3_2:78262349-78262368 Msa0427580:intron 40.0%
CAACACTCTTTCTTTGCCTT+TGG - chr3_2:78262477-78262496 Msa0427580:intron 40.0%
AGCATCAGGAAAATTCCCAA+AGG + chr3_2:78262496-78262515 None:intergenic 40.0%
CCTCATTGAAAACAAGCATC+AGG + chr3_2:78262510-78262529 None:intergenic 40.0%
!! CCTGATGCTTGTTTTCAATG+AGG - chr3_2:78262507-78262526 Msa0427580:intron 40.0%
AAGCTAGGTAATCTCAGAAG+TGG + chr3_2:78262779-78262798 None:intergenic 40.0%
GTCATCACTAACCAAAAGCT+AGG + chr3_2:78262794-78262813 None:intergenic 40.0%
! ATGACCTTCAGTGGAGTTTT+GGG - chr3_2:78262809-78262828 Msa0427580:CDS 40.0%
TTGATGAAGAAACCACATGG+AGG + chr3_2:78262852-78262871 None:intergenic 40.0%
GTGGTTTCTTCATCAAACAG+GGG - chr3_2:78262856-78262875 Msa0427580:CDS 40.0%
!! TTTGACTTGAGTTAGAACCG+TGG + chr3_2:78263043-78263062 None:intergenic 40.0%
GCAGATGGCAAACTAGTTAT+TGG + chr3_2:78263150-78263169 None:intergenic 40.0%
! AATGCAAATTGCAGGGCTTT+TGG - chr3_2:78263375-78263394 Msa0427580:CDS 40.0%
! TTTTCGCTAGAGCCAAAATC+CGG - chr3_2:78263407-78263426 Msa0427580:CDS 40.0%
CAATCCTGAAGAGCAGTATA+AGG - chr3_2:78263439-78263458 Msa0427580:exon 40.0%
! TCTGTGGTATTTGATTTCCG+GGG - chr3_2:78263473-78263492 Msa0427580:five_prime_UTR 40.0%
TTGAACTTCTAACTTCACCC+CGG + chr3_2:78263493-78263512 None:intergenic 40.0%
GTGAAGTTAGAAGTTCAACC+TGG - chr3_2:78263495-78263514 Msa0427580:five_prime_UTR 40.0%
! AAGTTCAACCTGGGATTTTG+AGG - chr3_2:78263505-78263524 Msa0427580:five_prime_UTR 40.0%
! AACTATCTCACCCTTTAGAG+AGG - chr3_2:78263557-78263576 Msa0427580:five_prime_UTR 40.0%
CACAAATCACACCTCTCTAA+AGG + chr3_2:78263571-78263590 None:intergenic 40.0%
!! CTTCTCTGAGGGATAGTTTT+TGG - chr3_2:78263605-78263624 Msa0427580:five_prime_UTR 40.0%
CGAATTAGATCCAAACGAAC+AGG + chr3_2:78263633-78263652 None:intergenic 40.0%
TTGGATTGCATTGCTAGCAA+TGG - chr3_2:78263664-78263683 Msa0427580:five_prime_UTR 40.0%
! AGGGTCACATTTTCATGTGA+AGG - chr3_2:78263834-78263853 Msa0427580:five_prime_UTR 40.0%
TCGAGGAGAAAAACCCATGA+AGG + chr3_2:78258864-78258883 None:intergenic 45.0%
CATCGTACTACACTCAACAC+AGG - chr3_2:78258950-78258969 Msa0427580:three_prime_UTR 45.0%
AGTCAATCCAATCAGGTCCT+TGG - chr3_2:78259498-78259517 Msa0427580:intron 45.0%
TACAGATCCAAGGACCTGAT+TGG + chr3_2:78259508-78259527 None:intergenic 45.0%
CAACTGAACCACTAACATGG+AGG - chr3_2:78259623-78259642 Msa0427580:CDS 45.0%
TCATCTTCCAAAGGGGATGA+TGG - chr3_2:78259776-78259795 Msa0427580:intron 45.0%
! GGAGGCAGATAATTTGTGAC+TGG - chr3_2:78259797-78259816 Msa0427580:intron 45.0%
AACTAGGCTACCCATCTTAC+AGG + chr3_2:78260758-78260777 None:intergenic 45.0%
TGTAAGATGGGTAGCCTAGT+TGG - chr3_2:78260757-78260776 Msa0427580:intron 45.0%
CCCATCATGGAAAATGGCTT+TGG - chr3_2:78260922-78260941 Msa0427580:intron 45.0%
CTTGTGTGCTCCCCAAAAAT+AGG + chr3_2:78261222-78261241 None:intergenic 45.0%
!! ACACAAGCTCTGAACTCTTG+AGG - chr3_2:78261235-78261254 Msa0427580:intron 45.0%
ACGAATGTCATAACTGCCGT+TGG - chr3_2:78261443-78261462 Msa0427580:intron 45.0%
TTGTTCAGTAAGCACCACGA+AGG - chr3_2:78261476-78261495 Msa0427580:intron 45.0%
!! CTGGGCTGCTCTATTTCTAA+TGG - chr3_2:78261505-78261524 Msa0427580:intron 45.0%
!! CAAAGTGGGGGTATCAAACA+CGG + chr3_2:78261567-78261586 None:intergenic 45.0%
TTGATACCCCCACTTTGATG+TGG - chr3_2:78261570-78261589 Msa0427580:intron 45.0%
GTATATGTTGGCAACAGCAC+CGG + chr3_2:78261659-78261678 None:intergenic 45.0%
TTTCCAAAGGTCGAATACCG+TGG - chr3_2:78261692-78261711 Msa0427580:intron 45.0%
TTCCAAAGGTCGAATACCGT+GGG - chr3_2:78261693-78261712 Msa0427580:intron 45.0%
CTTACCATTCTGTTACTGCC+TGG - chr3_2:78262234-78262253 Msa0427580:intron 45.0%
TGGTTAGTGATGACCTTCAG+TGG - chr3_2:78262800-78262819 Msa0427580:CDS 45.0%
! GATGACCTTCAGTGGAGTTT+TGG - chr3_2:78262808-78262827 Msa0427580:CDS 45.0%
TAGACCCAAAACTCCACTGA+AGG + chr3_2:78262816-78262835 None:intergenic 45.0%
! CAATTAGCTTCACCTCCATG+TGG - chr3_2:78262837-78262856 Msa0427580:CDS 45.0%
AAACAGGGGCTACAACTTAC+AGG - chr3_2:78262870-78262889 Msa0427580:CDS 45.0%
! TTTGCCATCTGCAGTCTTGT+AGG - chr3_2:78263158-78263177 Msa0427580:intron 45.0%
AAGATACCACTCTCAGTTGC+TGG - chr3_2:78263191-78263210 Msa0427580:intron 45.0%
GCAGAGTTCTCCAAACTTGT+AGG + chr3_2:78263236-78263255 None:intergenic 45.0%
CATTCTTGGTTCAACGCTGA+AGG - chr3_2:78263348-78263367 Msa0427580:CDS 45.0%
TTTCGCTAGAGCCAAAATCC+GGG - chr3_2:78263408-78263427 Msa0427580:CDS 45.0%
! TTGAGATCTCTCCCGGATTT+TGG + chr3_2:78263422-78263441 None:intergenic 45.0%
TTCAGGATTGAGATCTCTCC+CGG + chr3_2:78263429-78263448 None:intergenic 45.0%
CTAATTCGGGAAGAGTTGCT+TGG - chr3_2:78263645-78263664 Msa0427580:five_prime_UTR 45.0%
GATTGCATTGCTAGCAATGG+AGG - chr3_2:78263667-78263686 Msa0427580:five_prime_UTR 45.0%
CGTACTACACTCAACACAGG+CGG - chr3_2:78258953-78258972 Msa0427580:three_prime_UTR 50.0%
! AATTGCGCCGCTTTGAATCG+CGG + chr3_2:78259009-78259028 None:intergenic 50.0%
! TCTTCCAAAGGGGATGATGG+AGG - chr3_2:78259779-78259798 Msa0427580:intron 50.0%
AGGAGGCCAAGGAAAACTAG+AGG - chr3_2:78260805-78260824 Msa0427580:intron 50.0%
!!! CCATGGCCTCTAGTTTTCCT+TGG + chr3_2:78260814-78260833 None:intergenic 50.0%
CCAAGGAAAACTAGAGGCCA+TGG - chr3_2:78260811-78260830 Msa0427580:intron 50.0%
TTCCCACGGTATTCGACCTT+TGG + chr3_2:78261698-78261717 None:intergenic 50.0%
GCATCCAGGCAGTAACAGAA+TGG + chr3_2:78262241-78262260 None:intergenic 50.0%
TATTGCAGCTGACCCTACGA+AGG - chr3_2:78262386-78262405 Msa0427580:intron 50.0%
ATTGCAGCTGACCCTACGAA+GGG - chr3_2:78262387-78262406 Msa0427580:intron 50.0%
CGTATCCATGACCCTTCGTA+GGG + chr3_2:78262401-78262420 None:intergenic 50.0%
CCTACGAAGGGTCATGGATA+CGG - chr3_2:78262399-78262418 Msa0427580:intron 50.0%
CGAACCTACAAGACTGCAGA+TGG + chr3_2:78263165-78263184 None:intergenic 50.0%
! CAAATTGCAGGGCTTTTGGC+AGG - chr3_2:78263379-78263398 Msa0427580:CDS 50.0%
TGACGACACCTCAAAATCCC+AGG + chr3_2:78263516-78263535 None:intergenic 50.0%
!!! GTTTTTGGCCCCTGTTCGTT+TGG - chr3_2:78263620-78263639 Msa0427580:five_prime_UTR 50.0%
TCTGCCTCCATCATCCCCTT+TGG + chr3_2:78259786-78259805 None:intergenic 55.0%
!! TTGGCAACAGCACCGGTTGT+AGG + chr3_2:78261652-78261671 None:intergenic 55.0%
CCGTATCCATGACCCTTCGT+AGG + chr3_2:78262402-78262421 None:intergenic 55.0%
GGGGCTACAACTTACAGGTG+TGG - chr3_2:78262875-78262894 Msa0427580:CDS 55.0%
AGGATGCCAGCAACTGAGAG+TGG + chr3_2:78263200-78263219 None:intergenic 55.0%
ACACTCAACACAGGCGGAGC+TGG - chr3_2:78258959-78258978 Msa0427580:three_prime_UTR 60.0%
AGCACCACGAAGGCAGAGTC+TGG - chr3_2:78261486-78261505 Msa0427580:intron 60.0%
GCACCACGAAGGCAGAGTCT+GGG - chr3_2:78261487-78261506 Msa0427580:intron 60.0%
GCTGACCCTACGAAGGGTCA+TGG - chr3_2:78262393-78262412 Msa0427580:intron 60.0%
CTCAACACAGGCGGAGCTGG+TGG - chr3_2:78258962-78258981 Msa0427580:three_prime_UTR 65.0%
ACACAGGCGGAGCTGGTGGT+CGG - chr3_2:78258966-78258985 Msa0427580:three_prime_UTR 65.0%
! CGCTTTGAATCGCGGTGGCG+CGG + chr3_2:78259001-78259020 None:intergenic 65.0%
CGCGCCACCGCGATTCAAAG+CGG - chr3_2:78258999-78259018 Msa0427580:three_prime_UTR 65.0%
! TGCGCCGCTTTGAATCGCGG+TGG + chr3_2:78259006-78259025 None:intergenic 65.0%
CAGCCCAGACTCTGCCTTCG+TGG + chr3_2:78261493-78261512 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78258542 78263937 78258542 ID=Msa0427580;Name=Msa0427580
chr3_2 mRNA 78258542 78263937 78258542 ID=Msa0427580-mRNA-1;Parent=Msa0427580;Name=Msa0427580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=498|1|1|1|1|1|8|490|342
chr3_2 exon 78258542 78259090 78258542 ID=Msa0427580-mRNA-1:exon:20588;Parent=Msa0427580-mRNA-1
chr3_2 exon 78259210 78259307 78259210 ID=Msa0427580-mRNA-1:exon:20587;Parent=Msa0427580-mRNA-1
chr3_2 exon 78259588 78259704 78259588 ID=Msa0427580-mRNA-1:exon:20586;Parent=Msa0427580-mRNA-1
chr3_2 exon 78259931 78260085 78259931 ID=Msa0427580-mRNA-1:exon:20585;Parent=Msa0427580-mRNA-1
chr3_2 exon 78260304 78260402 78260304 ID=Msa0427580-mRNA-1:exon:20584;Parent=Msa0427580-mRNA-1
chr3_2 exon 78260953 78261082 78260953 ID=Msa0427580-mRNA-1:exon:20583;Parent=Msa0427580-mRNA-1
chr3_2 exon 78262769 78262908 78262769 ID=Msa0427580-mRNA-1:exon:20582;Parent=Msa0427580-mRNA-1
chr3_2 exon 78263209 78263937 78263209 ID=Msa0427580-mRNA-1:exon:20581;Parent=Msa0427580-mRNA-1
chr3_2 five_prime_UTR 78263440 78263937 78263440 ID=Msa0427580-mRNA-1:five_prime_utr;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78263209 78263439 78263209 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78262769 78262908 78262769 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78260953 78261082 78260953 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78260304 78260402 78260304 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78259931 78260085 78259931 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78259588 78259704 78259588 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78259210 78259307 78259210 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 CDS 78259032 78259090 78259032 ID=Msa0427580-mRNA-1:cds;Parent=Msa0427580-mRNA-1
chr3_2 three_prime_UTR 78258542 78259031 78258542 ID=Msa0427580-mRNA-1:three_prime_utr;Parent=Msa0427580-mRNA-1
Gene Sequence

>Msa0427580

ATGAAAATGAAGTCTTCTTCGGATGATGAACATGATGAAGAAAAAGGGAAGTTGTTGGAAAAAAGCAAAGAAAGAGGTTCCAGAAATGGAAGGGTTGTTGTTAAAGTTCATAATCAAGCCTTATTATCTGGACTTGCTTATTGTCTTTCCTCTTGTGGAATGATTTTAGTTAACAAATTTGTACTTTCTAGTTATGATTTTAATGCTGGAATATCCTTGATGGTGTATCAGAATTTCATTTCGGTGATCATTGTATCTATGTTGAGCCTTCTGGGTTTAGTTTCAACTGAACCACTAACATGGAGGTTGATTAAAGTCTGGTTTCCGGTCAATGTTATATTTGTTGGAATGCTAATTACAAGCATGTTTAGTTTGAAATACATTAATGTGGCTATGGTGACAGTCTTGAAGAATGTTACGAATGTCATAACTGCCGTTGGTGAAATGTACTTGTTCAGTAAGCACCACGAAGGCAGAGTCTGGGCTGCTCTATTTCTAATGATCATTTCAGCAATAACTGGAGGGATTACTGATCTCTCTTTTAATGCAACTGGCTATGTGTGGCAGACACTAAATTGTTTCTTAACTGCATCATATTCTCTGACCCTACGAAGGGTCATGGATACGGCAAAGCAATATACTAAATCTGGAAATTTAAATGAGTTTACGATGGTCTTGTTGAACAACACTCTTTCTTTGCCTTTGGGAATTTTCCTGATGCTTGTTTTCAATGAGGCTGATTATCTCTTAAGAACGCCACTTCTGAGATTACCTAGCTTTTGGTTAGTGATGACCTTCAGTGGAGTTTTGGGTCTAGCAATTAGCTTCACCTCCATGTGGTTTCTTCATCAAACAGGGGCTACAACTTACAGTCTTGTAGGTTCGCTGAATAAGATACCACTCTCAGTTGCTGGCATCCTTCTCTTTAAAGTTCCTACAAGTTTGGAGAACTCTGCTAGCATTTTATTTGGGCTTTTGGCAGGAGTACTTTTCGCTAGAGCCAAAATCCGGGAGAGATCTCAATCCTGA

Protein sequence

>Msa0427580

MKMKSSSDDEHDEEKGKLLEKSKERGSRNGRVVVKVHNQALLSGLAYCLSSCGMILVNKFVLSSYDFNAGISLMVYQNFISVIIVSMLSLLGLVSTEPLTWRLIKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFSKHHEGRVWAALFLMIISAITGGITDLSFNATGYVWQTLNCFLTASYSLTLRRVMDTAKQYTKSGNLNEFTMVLLNNTLSLPLGIFLMLVFNEADYLLRTPLLRLPSFWLVMTFSGVLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLLAGVLFARAKIRERSQS*