Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855750 | XP_004490779.1 | 83.143 | 350 | 54 | 1 | 1 | 345 | 1 | 350 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855750 | sp|Q9FFI2|ATG5_ARATH | 57.391 | 345 | 131 | 3 | 2 | 341 | 3 | 336 | 9.42e-147 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855750 | A0A1S2XM59 | 83.143 | 350 | 54 | 1 | 1 | 345 | 1 | 350 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0815550 | Msa0855750 | 0.803105 | 4.086460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855750 | MtrunA17_Chr5g0433811 | 88.122 | 362 | 26 | 4 | 1 | 346 | 1 | 361 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855750 | AT5G17290.1 | 57.391 | 345 | 131 | 3 | 2 | 341 | 3 | 336 | 9.57e-148 | 420 |
Find 80 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTCTTCTTCAACTTTC+TGG | 0.052224 | 5_4:+49607697 | None:intergenic |
| GTTAAATTCCACGGCCTTTC+TGG | 0.094375 | 5_4:+49605079 | None:intergenic |
| TATTTGCATGACAGGTAATT+TGG | 0.166892 | 5_4:-49602865 | Msa0855750:intron |
| TAGGCTGCATATGTAATAAA+TGG | 0.292955 | 5_4:-49604244 | Msa0855750:CDS |
| ATGCTCCAAACATTGATAAC+TGG | 0.315581 | 5_4:-49602150 | Msa0855750:CDS |
| ACATGACTTACAATCTTCAT+TGG | 0.330038 | 5_4:+49602078 | None:intergenic |
| TTGTGAATCACCCAAGAAAA+AGG | 0.333980 | 5_4:+49601392 | None:intergenic |
| CACGGAAGCAATAAATTACT+TGG | 0.340365 | 5_4:+49604743 | None:intergenic |
| TTCCTGTTCGTTTATATTTG+TGG | 0.349156 | 5_4:-49602204 | Msa0855750:CDS |
| CTCCTGGAGTAGACACCATT+TGG | 0.349281 | 5_4:-49606753 | Msa0855750:CDS |
| AAACTGATCAGGTGGAGCTC+TGG | 0.371178 | 5_4:-49604192 | Msa0855750:CDS |
| AACTGATCAGGTGGAGCTCT+GGG | 0.373153 | 5_4:-49604191 | Msa0855750:CDS |
| TTGTCCCAGTTATCAATGTT+TGG | 0.388360 | 5_4:+49602145 | None:intergenic |
| ATCTTCATTGGGAATCTCAT+TGG | 0.393444 | 5_4:+49602090 | None:intergenic |
| CTTAGATGACACCCGTCTAT+AGG | 0.394576 | 5_4:+49602839 | None:intergenic |
| ATCAAGTGTGTACGCGTTCA+AGG | 0.420354 | 5_4:-49601437 | Msa0855750:CDS |
| TTCTGCTCTACACTTCCTCC+TGG | 0.426993 | 5_4:-49606769 | Msa0855750:CDS |
| ACGAGAGCGGGTGGAGGAGG+AGG | 0.438437 | 5_4:+49607535 | None:intergenic |
| GTCCACAAATATAAACGAAC+AGG | 0.446641 | 5_4:+49602202 | None:intergenic |
| CACATGTGAAGGAAATAATC+AGG | 0.447656 | 5_4:+49601359 | None:intergenic |
| GGGTGGAGGAGGAGGAAGAG+TGG | 0.448769 | 5_4:+49607543 | None:intergenic |
| TCAAGGGATAGATCTGCCTT+TGG | 0.464570 | 5_4:-49601420 | Msa0855750:CDS |
| ATCTCATTGGAAATCTCAAC+AGG | 0.465730 | 5_4:+49602103 | None:intergenic |
| ACCGGGGATGCTGAAGCTGC+TGG | 0.471906 | 5_4:-49602744 | Msa0855750:CDS |
| CATGACTTACAATCTTCATT+GGG | 0.477472 | 5_4:+49602079 | None:intergenic |
| GGGAGAAAATTCATCTGATC+CGG | 0.477934 | 5_4:-49601492 | Msa0855750:CDS |
| TCTGTGTAGGTACACTTTAG+AGG | 0.480922 | 5_4:-49604770 | Msa0855750:intron |
| GAACATGTCTCAAACTGATC+AGG | 0.487136 | 5_4:-49604203 | Msa0855750:CDS |
| CACCAGAAAGTTGAAGAAGA+AGG | 0.488271 | 5_4:-49607699 | Msa0855750:five_prime_UTR |
| GTTCTTACTGTTAAATTCCA+CGG | 0.494033 | 5_4:+49605070 | None:intergenic |
| AAAGGCAAGTACCCCATCCT+AGG | 0.499221 | 5_4:+49606817 | None:intergenic |
| CATACGAGAGCGGGTGGAGG+AGG | 0.512710 | 5_4:+49607532 | None:intergenic |
| AACCAAATGGTGTCTACTCC+AGG | 0.513115 | 5_4:+49606751 | None:intergenic |
| TCCAGCAGCTTCAGCATCCC+CGG | 0.515498 | 5_4:+49602743 | None:intergenic |
| TGCATCTAATTCATTAACAA+AGG | 0.517718 | 5_4:+49601541 | None:intergenic |
| TGATTTCTGCAATCTCAAGC+AGG | 0.522858 | 5_4:+49601456 | None:intergenic |
| TTGTACAGGTATATACCAAC+TGG | 0.525553 | 5_4:-49605130 | Msa0855750:intron |
| TCCTTTGTACTCAAACCAAA+TGG | 0.525608 | 5_4:+49606738 | None:intergenic |
| GGAAGAGATGAATGAAGGAC+AGG | 0.528153 | 5_4:-49607623 | Msa0855750:exon |
| AAATCAAAGCACAGGAGAAG+AGG | 0.530580 | 5_4:-49601513 | Msa0855750:CDS |
| CTTTATCAACTCACTGAAAG+AGG | 0.532828 | 5_4:-49604693 | Msa0855750:intron |
| AGAAGCCAATGCTGTGCAGT+AGG | 0.540359 | 5_4:-49601318 | None:intergenic |
| TGCTCCAAACATTGATAACT+GGG | 0.544293 | 5_4:-49602149 | Msa0855750:CDS |
| AATTTATTGCTTCCGTGTGA+CGG | 0.548361 | 5_4:-49604737 | Msa0855750:CDS |
| TTATCCCTACTGCACAGCAT+TGG | 0.549021 | 5_4:+49601313 | None:intergenic |
| TCATGAAGATGAATTTGAAG+AGG | 0.549239 | 5_4:+49607577 | None:intergenic |
| AATCAAAGCACAGGAGAAGA+GGG | 0.552556 | 5_4:-49601512 | Msa0855750:CDS |
| ACCAGAAAGTTGAAGAAGAA+GGG | 0.559083 | 5_4:-49607698 | Msa0855750:five_prime_UTR |
| ACTAAATCTGAACAAAGTAC+CGG | 0.560549 | 5_4:-49602762 | Msa0855750:CDS |
| GGAAGTGTAGAGCAGAAATG+AGG | 0.560587 | 5_4:+49606775 | None:intergenic |
| GATCTGGAAGAGATGAATGA+AGG | 0.560736 | 5_4:-49607628 | Msa0855750:exon |
| CTAAATCTGAACAAAGTACC+GGG | 0.567854 | 5_4:-49602761 | Msa0855750:CDS |
| GTAATTTGGAATCCTATAGA+CGG | 0.573284 | 5_4:-49602851 | Msa0855750:CDS |
| TAATTTGGAATCCTATAGAC+GGG | 0.573723 | 5_4:-49602850 | Msa0855750:CDS |
| GTATGGAACCAGAAAGGCCG+TGG | 0.574803 | 5_4:-49605087 | Msa0855750:CDS |
| TGTTGTGTTCATACGAGAGC+GGG | 0.576326 | 5_4:+49607523 | None:intergenic |
| TCAAGTGTGTACGCGTTCAA+GGG | 0.580826 | 5_4:-49601436 | Msa0855750:CDS |
| GAAGCCAATGCTGTGCAGTA+GGG | 0.581631 | 5_4:-49601317 | None:intergenic |
| GCAAACATAAATCAAAGCAC+AGG | 0.582940 | 5_4:-49601521 | Msa0855750:CDS |
| TCAAGCAAACACACATGTGA+AGG | 0.583105 | 5_4:+49601348 | None:intergenic |
| ACCATTTGGTTTGAGTACAA+AGG | 0.584788 | 5_4:-49606739 | Msa0855750:CDS |
| CATGTCTCAAACTGATCAGG+TGG | 0.589699 | 5_4:-49604200 | Msa0855750:CDS |
| GTTCATACGAGAGCGGGTGG+AGG | 0.598729 | 5_4:+49607529 | None:intergenic |
| ATGAAGGACAGGAATACGTA+TGG | 0.609820 | 5_4:-49607612 | Msa0855750:CDS |
| GCTGCTGGACAAGTGAAGCC+AGG | 0.623495 | 5_4:-49602729 | Msa0855750:intron |
| AGCAGGTGGCAAGATGACGC+CGG | 0.623992 | 5_4:+49601473 | None:intergenic |
| ACACTGTCTTCACCGTCACA+CGG | 0.627485 | 5_4:+49604725 | None:intergenic |
| TGTGTTCATACGAGAGCGGG+TGG | 0.632851 | 5_4:+49607526 | None:intergenic |
| ACAAAGGATTGCCTCTCAAG+TGG | 0.632964 | 5_4:-49606723 | Msa0855750:intron |
| ACGGAAGCAATAAATTACTT+GGG | 0.633796 | 5_4:+49604744 | None:intergenic |
| TTCAACAGAGAAATCAACAA+AGG | 0.638419 | 5_4:+49606799 | None:intergenic |
| GGACAGGAATACGTATGGCA+AGG | 0.638744 | 5_4:-49607607 | Msa0855750:CDS |
| ACGGTGAAGACAGTGTGAAG+TGG | 0.646133 | 5_4:-49604718 | Msa0855750:CDS |
| ACTACACAATACCACTTGAG+AGG | 0.646158 | 5_4:+49606712 | None:intergenic |
| TTTCTGCAATCTCAAGCAGG+TGG | 0.659541 | 5_4:+49601459 | None:intergenic |
| ACTGATCAGGTGGAGCTCTG+GGG | 0.664570 | 5_4:-49604190 | Msa0855750:CDS |
| CAAATGGTGTCTACTCCAGG+AGG | 0.700830 | 5_4:+49606754 | None:intergenic |
| TTGAAGTTGATCAAGAACTG+CGG | 0.715913 | 5_4:-49607664 | Msa0855750:five_prime_UTR |
| GTGTTGTGTTCATACGAGAG+CGG | 0.728695 | 5_4:+49607522 | None:intergenic |
| TAAATCTGAACAAAGTACCG+GGG | 0.740964 | 5_4:-49602760 | Msa0855750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATAAAAAATGTATTT+TGG | - | chr5_4:49601834-49601853 | Msa0855750:intron | 10.0% |
| !!! | TTTATTGTATTATGTTTTAT+TGG | - | chr5_4:49602989-49603008 | Msa0855750:intron | 10.0% |
| !!! | TTTAATATTGTGATTTTTTT+TGG | - | chr5_4:49603857-49603876 | Msa0855750:intron | 10.0% |
| !!! | GTTAATTCTAAAAAAATTAA+AGG | + | chr5_4:49604621-49604640 | None:intergenic | 10.0% |
| !!! | TGTGATATGTTATTTTTTAT+TGG | - | chr5_4:49602051-49602070 | Msa0855750:intron | 15.0% |
| !! | TAAAATTGTAATGCTAAATT+TGG | + | chr5_4:49602469-49602488 | None:intergenic | 15.0% |
| !!! | ATTTAGCATTACAATTTTAA+AGG | - | chr5_4:49602470-49602489 | Msa0855750:intron | 15.0% |
| !! | AACATAATACAATAAAACAA+AGG | + | chr5_4:49602985-49603004 | None:intergenic | 15.0% |
| !!! | ATTTTAGCATTGAAATTATA+AGG | - | chr5_4:49603254-49603273 | Msa0855750:intron | 15.0% |
| !!! | TTTTAGCATTGAAATTATAA+GGG | - | chr5_4:49603255-49603274 | Msa0855750:intron | 15.0% |
| !! | TATTGTATTGTATGTTTAAT+TGG | - | chr5_4:49603594-49603613 | Msa0855750:intron | 15.0% |
| !! | ATTGTATTGTATGTTTAATT+GGG | - | chr5_4:49603595-49603614 | Msa0855750:intron | 15.0% |
| !!! | AACTGGATTTTAATTTTTTA+TGG | - | chr5_4:49604750-49604769 | Msa0855750:CDS | 15.0% |
| !! | AAAAGTTATTAAAATACACA+CGG | - | chr5_4:49605569-49605588 | Msa0855750:intron | 15.0% |
| !! | AACAAAAAGTAAGTTTAATA+TGG | + | chr5_4:49606767-49606786 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTGTTGTTTTA+TGG | - | chr5_4:49607185-49607204 | Msa0855750:intron | 15.0% |
| !! | ATAAAAATAAAACGAGAAAG+AGG | + | chr5_4:49601529-49601548 | None:intergenic | 20.0% |
| !! | TAAAACTTTATGTATTGTTC+TGG | - | chr5_4:49601732-49601751 | Msa0855750:intron | 20.0% |
| !!! | CAAGAATTCATGTTTTTATT+CGG | - | chr5_4:49601916-49601935 | Msa0855750:intron | 20.0% |
| !!! | TTTTTGTAACTCGTTTAATT+TGG | + | chr5_4:49601981-49602000 | None:intergenic | 20.0% |
| !!! | TTGATTTGCTAAAAAAACAA+GGG | + | chr5_4:49602019-49602038 | None:intergenic | 20.0% |
| !!! | TTTGATTTGCTAAAAAAACA+AGG | + | chr5_4:49602020-49602039 | None:intergenic | 20.0% |
| !!! | CATTTTGTTTGTGATTTTTT+AGG | - | chr5_4:49602169-49602188 | Msa0855750:CDS | 20.0% |
| !!! | TAAATCGTTATTTTAGTTGT+TGG | - | chr5_4:49602350-49602369 | Msa0855750:intron | 20.0% |
| !! | ATATCAATCAATTTATAGCA+TGG | + | chr5_4:49602698-49602717 | None:intergenic | 20.0% |
| !! | ATAAAGGGAGATATATTAAA+GGG | + | chr5_4:49603103-49603122 | None:intergenic | 20.0% |
| !! | AATAAAGGGAGATATATTAA+AGG | + | chr5_4:49603104-49603123 | None:intergenic | 20.0% |
| !! | TTTAATATATCTCCCTTTAT+TGG | - | chr5_4:49603103-49603122 | Msa0855750:intron | 20.0% |
| !!! | CTGTTTTAAAAACCAATAAA+GGG | + | chr5_4:49603118-49603137 | None:intergenic | 20.0% |
| !!! | ACTGTTTTAAAAACCAATAA+AGG | + | chr5_4:49603119-49603138 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTGCAAATTTGA+GGG | + | chr5_4:49603296-49603315 | None:intergenic | 20.0% |
| !!! | ATTTCTATTTTGCAAATTTG+AGG | + | chr5_4:49603297-49603316 | None:intergenic | 20.0% |
| !!! | GATTATTTGAGTTAATATGT+AGG | - | chr5_4:49603414-49603433 | Msa0855750:intron | 20.0% |
| !!! | ACTAAAAGAAATTTTGATTC+AGG | - | chr5_4:49603463-49603482 | Msa0855750:intron | 20.0% |
| !! | TTGTATTGTATGTTTAATTG+GGG | - | chr5_4:49603596-49603615 | Msa0855750:intron | 20.0% |
| !! | TTTGTTTCATAATTGTTACA+AGG | + | chr5_4:49604052-49604071 | None:intergenic | 20.0% |
| !!! | GTTATTTTAGTCTTTTTCAA+TGG | - | chr5_4:49604443-49604462 | Msa0855750:intron | 20.0% |
| !!! | AAATTTTCTCGATAGTTAAT+GGG | + | chr5_4:49604663-49604682 | None:intergenic | 20.0% |
| !! | AATTTGTAATGTCATTATGA+TGG | - | chr5_4:49604678-49604697 | Msa0855750:intron | 20.0% |
| !!! | GGATTTTAATTTTTTATGGT+AGG | - | chr5_4:49604754-49604773 | Msa0855750:CDS | 20.0% |
| !! | AAACAACAAAATAAAAAGGA+AGG | - | chr5_4:49605081-49605100 | Msa0855750:CDS | 20.0% |
| !! | AACAACAAAATAAAAAGGAA+GGG | - | chr5_4:49605082-49605101 | Msa0855750:CDS | 20.0% |
| !!! | TATTTATTCCCTTTTTGTTT+TGG | - | chr5_4:49605193-49605212 | Msa0855750:intron | 20.0% |
| !!! | ACATTAAACATGTTGAATTT+TGG | - | chr5_4:49605436-49605455 | Msa0855750:intron | 20.0% |
| !! | ACATGATACAATATTTGTTT+AGG | + | chr5_4:49605508-49605527 | None:intergenic | 20.0% |
| !! | ATATTGTATCATGTACAAAT+TGG | - | chr5_4:49605514-49605533 | Msa0855750:intron | 20.0% |
| !! | ATAATTCAACAAAAGAAATG+TGG | - | chr5_4:49605698-49605717 | Msa0855750:intron | 20.0% |
| !! | TGAATAAAGTTAAACTGAAA+AGG | - | chr5_4:49606451-49606470 | Msa0855750:intron | 20.0% |
| !! | TGGAAATATATTGCATAAAA+GGG | + | chr5_4:49606554-49606573 | None:intergenic | 20.0% |
| !! | TTGGAAATATATTGCATAAA+AGG | + | chr5_4:49606555-49606574 | None:intergenic | 20.0% |
| !!! | TTTAAGGTTGGATTATTTTA+TGG | - | chr5_4:49606601-49606620 | Msa0855750:intron | 20.0% |
| !! | AAAAGTAAGTTTAATATGGA+TGG | + | chr5_4:49606763-49606782 | None:intergenic | 20.0% |
| !! | TAACAAACAGTTATTAGAAA+GGG | + | chr5_4:49607277-49607296 | None:intergenic | 20.0% |
| !! | ATAACAAACAGTTATTAGAA+AGG | + | chr5_4:49607278-49607297 | None:intergenic | 20.0% |
| ! | AAATTGCAGCAAATGTAAAA+AGG | + | chr5_4:49601644-49601663 | None:intergenic | 25.0% |
| ! | GTAAGCAAGAAAATCAATAA+TGG | + | chr5_4:49601688-49601707 | None:intergenic | 25.0% |
| !! | TTGATAGTCTATTATACTCT+TGG | - | chr5_4:49601862-49601881 | Msa0855750:intron | 25.0% |
| !! | TTAATTTGGAAACTGATCAT+GGG | + | chr5_4:49601967-49601986 | None:intergenic | 25.0% |
| !!! | TTTAATTTGGAAACTGATCA+TGG | + | chr5_4:49601968-49601987 | None:intergenic | 25.0% |
| !!! | TGGAAGTTATTGAAGTATTT+TGG | - | chr5_4:49602106-49602125 | Msa0855750:CDS | 25.0% |
| !!! | GTTTGTGATTTTTTAGGTTT+TGG | - | chr5_4:49602175-49602194 | Msa0855750:CDS | 25.0% |
| !!! | TTTTAGTTGTTGGAATTCTA+AGG | - | chr5_4:49602360-49602379 | Msa0855750:intron | 25.0% |
| ! | TTTAGTTGTTGGAATTCTAA+GGG | - | chr5_4:49602361-49602380 | Msa0855750:intron | 25.0% |
| ! | CCAATATAGTTCAATTTAAG+AGG | + | chr5_4:49602429-49602448 | None:intergenic | 25.0% |
| ! | CCTCTTAAATTGAACTATAT+TGG | - | chr5_4:49602426-49602445 | Msa0855750:intron | 25.0% |
| ! | ACTTGAATAATCTATTGTTG+CGG | + | chr5_4:49602512-49602531 | None:intergenic | 25.0% |
| !!! | GATTATTCAAGTTGATATGT+AGG | - | chr5_4:49602520-49602539 | Msa0855750:intron | 25.0% |
| !!! | TAGGTTTTCATTGATTTTGA+TGG | - | chr5_4:49602539-49602558 | Msa0855750:intron | 25.0% |
| !!! | TAAAGAGGTATTTTGATTGA+GGG | - | chr5_4:49602573-49602592 | Msa0855750:intron | 25.0% |
| ! | TTTGATTAACTGTAAAACCA+GGG | - | chr5_4:49602605-49602624 | Msa0855750:intron | 25.0% |
| !! | TATCAATCAGTGTTGTTAAA+TGG | + | chr5_4:49602884-49602903 | None:intergenic | 25.0% |
| ! | AACTGACATTGTTCAATTAA+GGG | + | chr5_4:49603325-49603344 | None:intergenic | 25.0% |
| ! | TAACTGACATTGTTCAATTA+AGG | + | chr5_4:49603326-49603345 | None:intergenic | 25.0% |
| ! | AAAAATCGTGATGCTAAATT+TGG | + | chr5_4:49603363-49603382 | None:intergenic | 25.0% |
| !! | ATTTAGCATCACGATTTTTA+AGG | - | chr5_4:49603364-49603383 | Msa0855750:intron | 25.0% |
| !!! | TTTGCTATTTCGTAAATTTG+AGG | - | chr5_4:49603524-49603543 | Msa0855750:intron | 25.0% |
| !!! | TTGCTATTTCGTAAATTTGA+GGG | - | chr5_4:49603525-49603544 | Msa0855750:intron | 25.0% |
| ! | TGTATTAGAATGAACTTTCA+TGG | - | chr5_4:49603649-49603668 | Msa0855750:intron | 25.0% |
| !!! | CTTGTTTTCAAAGCATTTTA+TGG | - | chr5_4:49603713-49603732 | Msa0855750:intron | 25.0% |
| !! | TCTTTTTGATCTTTTGTGTA+TGG | - | chr5_4:49603913-49603932 | Msa0855750:intron | 25.0% |
| ! | ATGAAGTCTTCAATGAAATT+TGG | - | chr5_4:49603981-49604000 | Msa0855750:intron | 25.0% |
| ! | TGAAGTCTTCAATGAAATTT+GGG | - | chr5_4:49603982-49604001 | Msa0855750:intron | 25.0% |
| ! | GATTCACTACAAATGTTTAA+TGG | - | chr5_4:49604174-49604193 | Msa0855750:intron | 25.0% |
| ! | GATTTAATATAGCTATGCAT+TGG | + | chr5_4:49604218-49604237 | None:intergenic | 25.0% |
| ! | TAAGGAAATTATGATGTCAA+TGG | - | chr5_4:49604489-49604508 | Msa0855750:intron | 25.0% |
| ! | TTAGTGAAACTTGGTTAATT+AGG | - | chr5_4:49604540-49604559 | Msa0855750:intron | 25.0% |
| !! | CAAATTTTCTCGATAGTTAA+TGG | + | chr5_4:49604664-49604683 | None:intergenic | 25.0% |
| !!! | TTATTTTTACTGAGCTTAAC+TGG | - | chr5_4:49604733-49604752 | Msa0855750:CDS | 25.0% |
| ! | GGGAAAACAACAAAATAAAA+AGG | - | chr5_4:49605077-49605096 | Msa0855750:intron | 25.0% |
| ! | ATACGATGATGATTAGAATT+CGG | - | chr5_4:49605250-49605269 | Msa0855750:intron | 25.0% |
| !! | AGTTCAATTTGCTTTGATTT+AGG | - | chr5_4:49605346-49605365 | Msa0855750:intron | 25.0% |
| !! | ATTTGCTTTGATTTAGGAAT+AGG | - | chr5_4:49605352-49605371 | Msa0855750:intron | 25.0% |
| !! | GCATTTTATTCTAGACATAT+AGG | - | chr5_4:49605458-49605477 | Msa0855750:intron | 25.0% |
| ! | TGAAACTCAGTTTCTATTAT+GGG | + | chr5_4:49605485-49605504 | None:intergenic | 25.0% |
| ! | ATAGTGTCTATTGATATATG+TGG | + | chr5_4:49605640-49605659 | None:intergenic | 25.0% |
| !!! | GAAATTGTAACTGATTTTGT+TGG | - | chr5_4:49605783-49605802 | Msa0855750:intron | 25.0% |
| ! | CTGACATATTTATTAGTAGA+GGG | - | chr5_4:49605823-49605842 | Msa0855750:intron | 25.0% |
| ! | TAATCTATTTGTAACATGCT+TGG | - | chr5_4:49605855-49605874 | Msa0855750:intron | 25.0% |
| ! | TAGATTAGTGCTAATCAATT+AGG | - | chr5_4:49606000-49606019 | Msa0855750:intron | 25.0% |
| !! | ACATGATTTGCAGTAATTTA+TGG | - | chr5_4:49606087-49606106 | Msa0855750:intron | 25.0% |
| !! | TCCTCTTTCATTTTCTTTTA+TGG | - | chr5_4:49606358-49606377 | Msa0855750:intron | 25.0% |
| ! | TCCATAAAAGAAAATGAAAG+AGG | + | chr5_4:49606362-49606381 | None:intergenic | 25.0% |
| !!! | TGGATTATTTTATGGCATAT+TGG | - | chr5_4:49606609-49606628 | Msa0855750:intron | 25.0% |
| ! | TTAACATCTTCTATCTTGTT+AGG | - | chr5_4:49606785-49606804 | Msa0855750:CDS | 25.0% |
| ! | TATTCAGTTTAAAAGCTCTA+TGG | + | chr5_4:49606979-49606998 | None:intergenic | 25.0% |
| !! | TCATTAACAAAGGAATTTTC+TGG | + | chr5_4:49607469-49607488 | None:intergenic | 25.0% |
| ! | TGCATCTAATTCATTAACAA+AGG | + | chr5_4:49607479-49607498 | None:intergenic | 25.0% |
| !! | TTTGGATATACCTTTTTCTT+GGG | - | chr5_4:49607615-49607634 | Msa0855750:CDS | 25.0% |
| TCATGAAGATGAATTTGAAG+AGG | + | chr5_4:49601443-49601462 | None:intergenic | 30.0% | |
| TAAAACGAGAAAGAGGAAAA+GGG | + | chr5_4:49601522-49601541 | None:intergenic | 30.0% | |
| ATAAAACGAGAAAGAGGAAA+AGG | + | chr5_4:49601523-49601542 | None:intergenic | 30.0% | |
| ! | AAGTTCCGATTTTTACATCA+TGG | - | chr5_4:49601590-49601609 | Msa0855750:intron | 30.0% |
| ! | AGTTCCGATTTTTACATCAT+GGG | - | chr5_4:49601591-49601610 | Msa0855750:intron | 30.0% |
| AAACCCCATGATGTAAAAAT+CGG | + | chr5_4:49601598-49601617 | None:intergenic | 30.0% | |
| GTAAAAAGGTGAAAACTTTG+AGG | + | chr5_4:49601630-49601649 | None:intergenic | 30.0% | |
| TTGGATAAAAAGTTGTCTCA+TGG | - | chr5_4:49601881-49601900 | Msa0855750:intron | 30.0% | |
| !! | CATTTGCTACATGTTTTATC+CGG | - | chr5_4:49601940-49601959 | Msa0855750:intron | 30.0% |
| ! | TGGTGTGTATTTGTTGAATA+CGG | - | chr5_4:49602071-49602090 | Msa0855750:intron | 30.0% |
| TTCAACAGAGAAATCAACAA+AGG | + | chr5_4:49602221-49602240 | None:intergenic | 30.0% | |
| ! | ATGGATGTTTTCTACTAAAG+AGG | - | chr5_4:49602558-49602577 | Msa0855750:intron | 30.0% |
| !!! | CTAAAGAGGTATTTTGATTG+AGG | - | chr5_4:49602572-49602591 | Msa0855750:intron | 30.0% |
| GTTTGATTAACTGTAAAACC+AGG | - | chr5_4:49602604-49602623 | Msa0855750:intron | 30.0% | |
| ATTGATATCAATGTTGTCGA+TGG | - | chr5_4:49602710-49602729 | Msa0855750:intron | 30.0% | |
| !! | TGTTTTATTGGTGTAGAGAT+AGG | - | chr5_4:49603001-49603020 | Msa0855750:intron | 30.0% |
| !! | GTTTTATTGGTGTAGAGATA+GGG | - | chr5_4:49603002-49603021 | Msa0855750:intron | 30.0% |
| GTAACAATTGAAGAAAACCA+AGG | + | chr5_4:49603165-49603184 | None:intergenic | 30.0% | |
| ! | AGCATTGAAATTATAAGGGT+CGG | - | chr5_4:49603259-49603278 | Msa0855750:intron | 30.0% |
| ! | AGGTTTTCCATTGAATTTGA+TGG | - | chr5_4:49603434-49603453 | Msa0855750:intron | 30.0% |
| TCAACAACCATCAAATTCAA+TGG | + | chr5_4:49603444-49603463 | None:intergenic | 30.0% | |
| !! | TTGACGTTCTTTTATTTCAG+AGG | - | chr5_4:49603497-49603516 | Msa0855750:intron | 30.0% |
| TAAACCAATATTTCAGTCCT+CGG | + | chr5_4:49603566-49603585 | None:intergenic | 30.0% | |
| ! | TTCTAATACATCTGATTCGT+AGG | + | chr5_4:49603639-49603658 | None:intergenic | 30.0% |
| AAGGGTAAACAAATTGATAC+TGG | + | chr5_4:49603678-49603697 | None:intergenic | 30.0% | |
| !! | ATGCTTTGAAAACAAGTGAA+GGG | + | chr5_4:49603709-49603728 | None:intergenic | 30.0% |
| !! | AATGCTTTGAAAACAAGTGA+AGG | + | chr5_4:49603710-49603729 | None:intergenic | 30.0% |
| ACAGTTGAAAAACATTGACA+AGG | + | chr5_4:49603750-49603769 | None:intergenic | 30.0% | |
| !!! | ATTGTGATTTTTTTTGGCCA+TGG | - | chr5_4:49603863-49603882 | Msa0855750:intron | 30.0% |
| GTTCTTACTGTTAAATTCCA+CGG | + | chr5_4:49603950-49603969 | None:intergenic | 30.0% | |
| ACAAATGATTGAAATCTGCT+TGG | - | chr5_4:49604067-49604086 | Msa0855750:intron | 30.0% | |
| CAAATGATTGAAATCTGCTT+GGG | - | chr5_4:49604068-49604087 | Msa0855750:intron | 30.0% | |
| AAATGATTGAAATCTGCTTG+GGG | - | chr5_4:49604069-49604088 | Msa0855750:intron | 30.0% | |
| !!! | TTTTTTAGCTGAAATTCCGA+AGG | - | chr5_4:49604128-49604147 | Msa0855750:intron | 30.0% |
| ! | ATTTTCACATTAGTGACCTT+CGG | + | chr5_4:49604147-49604166 | None:intergenic | 30.0% |
| ACGGAAGCAATAAATTACTT+GGG | + | chr5_4:49604276-49604295 | None:intergenic | 30.0% | |
| ! | TTTTATCATGCATAAGCATG+AGG | + | chr5_4:49604409-49604428 | None:intergenic | 30.0% |
| TGTATAGTATGAGGATAGTA+AGG | - | chr5_4:49604471-49604490 | Msa0855750:intron | 30.0% | |
| AAATTATGATGTCAATGGAC+AGG | - | chr5_4:49604494-49604513 | Msa0855750:intron | 30.0% | |
| AATTATGATGTCAATGGACA+GGG | - | chr5_4:49604495-49604514 | Msa0855750:intron | 30.0% | |
| ! | TAATTAGGCTTATTGAGTTG+AGG | - | chr5_4:49604555-49604574 | Msa0855750:intron | 30.0% |
| TAGGCTGCATATGTAATAAA+TGG | - | chr5_4:49604773-49604792 | Msa0855750:intron | 30.0% | |
| AGAATAGTGTTACACGAAAT+TGG | - | chr5_4:49604967-49604986 | Msa0855750:intron | 30.0% | |
| GAATAGTGTTACACGAAATT+GGG | - | chr5_4:49604968-49604987 | Msa0855750:intron | 30.0% | |
| !!! | ATTCCCTTTTTGTTTTGGTA+TGG | - | chr5_4:49605198-49605217 | Msa0855750:intron | 30.0% |
| ATGCCATACCAAAACAAAAA+GGG | + | chr5_4:49605204-49605223 | None:intergenic | 30.0% | |
| TATGCCATACCAAAACAAAA+AGG | + | chr5_4:49605205-49605224 | None:intergenic | 30.0% | |
| ! | GCATACACTTTTCAATATTC+AGG | - | chr5_4:49605220-49605239 | Msa0855750:intron | 30.0% |
| TACGATGATGATTAGAATTC+GGG | - | chr5_4:49605251-49605270 | Msa0855750:intron | 30.0% | |
| CTAGATAAGTATCTATAGCT+TGG | + | chr5_4:49605378-49605397 | None:intergenic | 30.0% | |
| GTGAAACTCAGTTTCTATTA+TGG | + | chr5_4:49605486-49605505 | None:intergenic | 30.0% | |
| ! | TATATTGTGCAACTTGTTCT+TGG | + | chr5_4:49605608-49605627 | None:intergenic | 30.0% |
| AAGAAATGTGGAAAAAACAC+AGG | - | chr5_4:49605710-49605729 | Msa0855750:intron | 30.0% | |
| GCTGACATATTTATTAGTAG+AGG | - | chr5_4:49605822-49605841 | Msa0855750:intron | 30.0% | |
| TTACAAATAGATTAAGTCCG+AGG | + | chr5_4:49605849-49605868 | None:intergenic | 30.0% | |
| TCTAGAAAGTTGTATACTCT+AGG | + | chr5_4:49605984-49606003 | None:intergenic | 30.0% | |
| TATTTGCATGACAGGTAATT+TGG | - | chr5_4:49606152-49606171 | Msa0855750:intron | 30.0% | |
| ! | GTAATTTGGAATCCTATAGA+CGG | - | chr5_4:49606166-49606185 | Msa0855750:intron | 30.0% |
| ! | TAATTTGGAATCCTATAGAC+GGG | - | chr5_4:49606167-49606186 | Msa0855750:intron | 30.0% |
| ACTAAATCTGAACAAAGTAC+CGG | - | chr5_4:49606255-49606274 | Msa0855750:intron | 30.0% | |
| GACAAAACAGCAATCTAAAT+TGG | + | chr5_4:49606340-49606359 | None:intergenic | 30.0% | |
| CTTCCATTTCTATGATCAAT+TGG | - | chr5_4:49606427-49606446 | Msa0855750:intron | 30.0% | |
| AGGAAACATGAGAAAAGAAA+AGG | - | chr5_4:49606471-49606490 | Msa0855750:intron | 30.0% | |
| ! | GTCAATAAGTTTTCCTAGAT+TGG | - | chr5_4:49606509-49606528 | Msa0855750:intron | 30.0% |
| TATTGGCATTTCATAGAATG+TGG | - | chr5_4:49606626-49606645 | Msa0855750:intron | 30.0% | |
| ATTGGCATTTCATAGAATGT+GGG | - | chr5_4:49606627-49606646 | Msa0855750:intron | 30.0% | |
| ! | TGTCAAAAGTACACTCAAAA+TGG | + | chr5_4:49606703-49606722 | None:intergenic | 30.0% |
| ! | TTTGAGTGTACTTTTGACAT+TGG | - | chr5_4:49606704-49606723 | Msa0855750:intron | 30.0% |
| GTTTAATATGGATGGAGAAA+AGG | + | chr5_4:49606755-49606774 | None:intergenic | 30.0% | |
| TTCCTGTTCGTTTATATTTG+TGG | - | chr5_4:49606813-49606832 | Msa0855750:CDS | 30.0% | |
| CATGACTTACAATCTTCATT+GGG | + | chr5_4:49606941-49606960 | None:intergenic | 30.0% | |
| ACATGACTTACAATCTTCAT+TGG | + | chr5_4:49606942-49606961 | None:intergenic | 30.0% | |
| TTTCCATGTTTGTCTTATGT+TGG | - | chr5_4:49607021-49607040 | Msa0855750:intron | 30.0% | |
| !!! | TTTTTTGTTGTTTTATGGCG+AGG | - | chr5_4:49607190-49607209 | Msa0855750:intron | 30.0% |
| !!! | TTTTTGTTGTTTTATGGCGA+GGG | - | chr5_4:49607191-49607210 | Msa0855750:intron | 30.0% |
| ! | CAAGAAAAAGGTATATCCAA+AGG | + | chr5_4:49607616-49607635 | None:intergenic | 30.0% |
| ! | CTTTGGATATACCTTTTTCT+TGG | - | chr5_4:49607614-49607633 | Msa0855750:CDS | 30.0% |
| ACCAGAAAGTTGAAGAAGAA+GGG | - | chr5_4:49601319-49601338 | Msa0855750:CDS | 35.0% | |
| ! | TTGAAGTTGATCAAGAACTG+CGG | - | chr5_4:49601353-49601372 | Msa0855750:CDS | 35.0% |
| GTAAAAATCGGAACTTGAAG+TGG | + | chr5_4:49601586-49601605 | None:intergenic | 35.0% | |
| ! | GTTCCGATTTTTACATCATG+GGG | - | chr5_4:49601592-49601611 | Msa0855750:intron | 35.0% |
| !!! | TTTTTTAGGTTTTGGCTCCT+AGG | - | chr5_4:49602183-49602202 | Msa0855750:CDS | 35.0% |
| !! | ACCATTTGGTTTGAGTACAA+AGG | - | chr5_4:49602278-49602297 | Msa0855750:intron | 35.0% |
| TCCTTTGTACTCAAACCAAA+TGG | + | chr5_4:49602282-49602301 | None:intergenic | 35.0% | |
| CACAGAAAGTAAACTCTACA+AGG | + | chr5_4:49602646-49602665 | None:intergenic | 35.0% | |
| !! | ATGTTATTATGGCGGATTTC+TGG | + | chr5_4:49602753-49602772 | None:intergenic | 35.0% |
| ATTGAAGAAAACCAAGGACA+AGG | + | chr5_4:49603159-49603178 | None:intergenic | 35.0% | |
| AAACCAATATTTCAGTCCTC+GGG | + | chr5_4:49603565-49603584 | None:intergenic | 35.0% | |
| TGTTTAATTGGGGCAGATAT+TGG | - | chr5_4:49603606-49603625 | Msa0855750:intron | 35.0% | |
| GTTTAATTGGGGCAGATATT+GGG | - | chr5_4:49603607-49603626 | Msa0855750:intron | 35.0% | |
| !! | TGCTTTGAAAACAAGTGAAG+GGG | + | chr5_4:49603708-49603727 | None:intergenic | 35.0% |
| GTTGAAAAACATTGACAAGG+TGG | + | chr5_4:49603747-49603766 | None:intergenic | 35.0% | |
| TTGTACAGGTATATACCAAC+TGG | - | chr5_4:49603887-49603906 | Msa0855750:intron | 35.0% | |
| AGATCAAAAAGAACTCCAGT+TGG | + | chr5_4:49603905-49603924 | None:intergenic | 35.0% | |
| ! | TTTTGTGTATGGAACCAGAA+AGG | - | chr5_4:49603924-49603943 | Msa0855750:intron | 35.0% |
| AGTCTTCAATGAAATTTGGG+CGG | - | chr5_4:49603985-49604004 | Msa0855750:intron | 35.0% | |
| CACGGAAGCAATAAATTACT+TGG | + | chr5_4:49604277-49604296 | None:intergenic | 35.0% | |
| AATTTATTGCTTCCGTGTGA+CGG | - | chr5_4:49604280-49604299 | Msa0855750:intron | 35.0% | |
| CTTTATCAACTCACTGAAAG+AGG | - | chr5_4:49604324-49604343 | Msa0855750:intron | 35.0% | |
| CATGATAAAACTATCTGCGT+TGG | - | chr5_4:49604419-49604438 | Msa0855750:intron | 35.0% | |
| ATGGTCGTTTGTATAGTATG+AGG | - | chr5_4:49604462-49604481 | Msa0855750:intron | 35.0% | |
| GGGATATCATTAGTGAAACT+TGG | - | chr5_4:49604531-49604550 | Msa0855750:intron | 35.0% | |
| !! | TTATTGAGTTGAGGTAATGG+TGG | - | chr5_4:49604564-49604583 | Msa0855750:intron | 35.0% |
| CATGTAAGAAAACCCCATTT+AGG | - | chr5_4:49604928-49604947 | Msa0855750:intron | 35.0% | |
| !! | AATTGGGTTGAACATAGAGT+TGG | - | chr5_4:49604984-49605003 | Msa0855750:intron | 35.0% |
| !! | ATTGGGTTGAACATAGAGTT+GGG | - | chr5_4:49604985-49605004 | Msa0855750:intron | 35.0% |
| TGTTAGCGACTGTTAATTCA+CGG | - | chr5_4:49605022-49605041 | Msa0855750:intron | 35.0% | |
| AGATTATGAGGAGTAAGAAG+TGG | - | chr5_4:49605126-49605145 | Msa0855750:intron | 35.0% | |
| ! | TGATGATTAGAATTCGGGTT+AGG | - | chr5_4:49605256-49605275 | Msa0855750:intron | 35.0% |
| AGCTTAATAAGGTACAGCTT+TGG | + | chr5_4:49605293-49605312 | None:intergenic | 35.0% | |
| AAGCAAATTGAACTTCACCT+TGG | + | chr5_4:49605340-49605359 | None:intergenic | 35.0% | |
| ! | TAGTCACTTTGCAAGAGATA+AGG | - | chr5_4:49605749-49605768 | Msa0855750:intron | 35.0% |
| !! | TGTTGGTTCAAGTGATCAAT+TGG | - | chr5_4:49605800-49605819 | Msa0855750:intron | 35.0% |
| TATTTATTAGTAGAGGGCCT+CGG | - | chr5_4:49605829-49605848 | Msa0855750:intron | 35.0% | |
| TCTACGAAGTTGTACAACTT+AGG | + | chr5_4:49605946-49605965 | None:intergenic | 35.0% | |
| TGTCATGCAAATAGTAATGG+CGG | + | chr5_4:49606145-49606164 | None:intergenic | 35.0% | |
| ACCTGTCATGCAAATAGTAA+TGG | + | chr5_4:49606148-49606167 | None:intergenic | 35.0% | |
| ! | CTAAATCTGAACAAAGTACC+GGG | - | chr5_4:49606256-49606275 | Msa0855750:intron | 35.0% |
| !! | TAAATCTGAACAAAGTACCG+GGG | - | chr5_4:49606257-49606276 | Msa0855750:intron | 35.0% |
| AAGTTAGGGAAAACGTGAAA+CGG | + | chr5_4:49606385-49606404 | None:intergenic | 35.0% | |
| ! | TCACGTTTTCCCTAACTTTT+TGG | - | chr5_4:49606387-49606406 | Msa0855750:intron | 35.0% |
| GTCAAAGAGCCAAAAAGTTA+GGG | + | chr5_4:49606399-49606418 | None:intergenic | 35.0% | |
| TGTCAAAGAGCCAAAAAGTT+AGG | + | chr5_4:49606400-49606419 | None:intergenic | 35.0% | |
| CAGCCAATTGATCATAGAAA+TGG | + | chr5_4:49606433-49606452 | None:intergenic | 35.0% | |
| CATGAGAAAAGAAAAGGCAA+AGG | - | chr5_4:49606477-49606496 | Msa0855750:intron | 35.0% | |
| ! | CCTGTAGTTTTCGACAATAT+TGG | + | chr5_4:49606574-49606593 | None:intergenic | 35.0% |
| CCAATATTGTCGAAAACTAC+AGG | - | chr5_4:49606571-49606590 | Msa0855750:intron | 35.0% | |
| TATTGTCGAAAACTACAGGT+TGG | - | chr5_4:49606575-49606594 | Msa0855750:intron | 35.0% | |
| !!! | AACTACAGGTTGGTGTTTTA+AGG | - | chr5_4:49606585-49606604 | Msa0855750:intron | 35.0% |
| ! | TTGACATTGGTGACTTGAAT+TGG | - | chr5_4:49606717-49606736 | Msa0855750:intron | 35.0% |
| ! | GACTTGAATTGGTTTCATGT+AGG | - | chr5_4:49606728-49606747 | Msa0855750:CDS | 35.0% |
| CATCTTCTATCTTGTTAGGT+AGG | - | chr5_4:49606789-49606808 | Msa0855750:CDS | 35.0% | |
| GTCCACAAATATAAACGAAC+AGG | + | chr5_4:49606818-49606837 | None:intergenic | 35.0% | |
| ! | ATGCTCCAAACATTGATAAC+TGG | - | chr5_4:49606867-49606886 | Msa0855750:intron | 35.0% |
| ! | TGCTCCAAACATTGATAACT+GGG | - | chr5_4:49606868-49606887 | Msa0855750:intron | 35.0% |
| TTGTCCCAGTTATCAATGTT+TGG | + | chr5_4:49606875-49606894 | None:intergenic | 35.0% | |
| ATCTCATTGGAAATCTCAAC+AGG | + | chr5_4:49606917-49606936 | None:intergenic | 35.0% | |
| ATCTTCATTGGGAATCTCAT+TGG | + | chr5_4:49606930-49606949 | None:intergenic | 35.0% | |
| TCAGTTTAAAAGCTCTATGG+AGG | + | chr5_4:49606976-49606995 | None:intergenic | 35.0% | |
| GAACCAACATAAGACAAACA+TGG | + | chr5_4:49607027-49607046 | None:intergenic | 35.0% | |
| AATGTTACACATAGCTGAGA+CGG | + | chr5_4:49607120-49607139 | None:intergenic | 35.0% | |
| !!! | GAATTTTCTGGAAAGTACTC+GGG | + | chr5_4:49607457-49607476 | None:intergenic | 35.0% |
| !!! | GGAATTTTCTGGAAAGTACT+CGG | + | chr5_4:49607458-49607477 | None:intergenic | 35.0% |
| GCAAACATAAATCAAAGCAC+AGG | - | chr5_4:49607496-49607515 | Msa0855750:intron | 35.0% | |
| TTGTGAATCACCCAAGAAAA+AGG | + | chr5_4:49607628-49607647 | None:intergenic | 35.0% | |
| CACATGTGAAGGAAATAATC+AGG | + | chr5_4:49607661-49607680 | None:intergenic | 35.0% | |
| ACCCTTCTTCTTCAACTTTC+TGG | + | chr5_4:49601323-49601342 | None:intergenic | 40.0% | |
| GATCTGGAAGAGATGAATGA+AGG | - | chr5_4:49601389-49601408 | Msa0855750:CDS | 40.0% | |
| ATGAAGGACAGGAATACGTA+TGG | - | chr5_4:49601405-49601424 | Msa0855750:CDS | 40.0% | |
| GTTGTCTCATGGTTAAGTGA+TGG | - | chr5_4:49601892-49601911 | Msa0855750:intron | 40.0% | |
| !! | GAATACGGTGTTGCTTTAAC+TGG | - | chr5_4:49602086-49602105 | Msa0855750:intron | 40.0% |
| ACTACACAATACCACTTGAG+AGG | + | chr5_4:49602308-49602327 | None:intergenic | 40.0% | |
| ! | GTTGTTGGAATTCTAAGGGT+TGG | - | chr5_4:49602365-49602384 | Msa0855750:intron | 40.0% |
| GATTAACTGTAAAACCAGGG+TGG | - | chr5_4:49602608-49602627 | Msa0855750:intron | 40.0% | |
| GATATCAATGTTGTCGATGG+TGG | - | chr5_4:49602713-49602732 | Msa0855750:intron | 40.0% | |
| GCAATGGCATGTTATTATGG+CGG | + | chr5_4:49602761-49602780 | None:intergenic | 40.0% | |
| GCCATAATAACATGCCATTG+CGG | - | chr5_4:49602760-49602779 | Msa0855750:CDS | 40.0% | |
| !! | GTGCGCATCACTTTTCAAAT+TGG | - | chr5_4:49602800-49602819 | Msa0855750:CDS | 40.0% |
| TTCCCAACCCTTACAATTTG+AGG | - | chr5_4:49602955-49602974 | Msa0855750:intron | 40.0% | |
| TCCCAACCCTTACAATTTGA+GGG | - | chr5_4:49602956-49602975 | Msa0855750:intron | 40.0% | |
| TTGTTATGCTACCTTGTCCT+TGG | - | chr5_4:49603145-49603164 | Msa0855750:intron | 40.0% | |
| GTTTCACGCTTATCTTGATG+CGG | - | chr5_4:49603386-49603405 | Msa0855750:intron | 40.0% | |
| TAACCCGAGGACTGAAATAT+TGG | - | chr5_4:49603559-49603578 | Msa0855750:intron | 40.0% | |
| AAGTGAAGGGGGAGATTAAA+GGG | + | chr5_4:49603696-49603715 | None:intergenic | 40.0% | |
| !! | GCTTTGAAAACAAGTGAAGG+GGG | + | chr5_4:49603707-49603726 | None:intergenic | 40.0% |
| GTATATACCTGTACAAGCCA+TGG | + | chr5_4:49603883-49603902 | None:intergenic | 40.0% | |
| ATTGAAATCTGCTTGGGGAA+GGG | - | chr5_4:49604074-49604093 | Msa0855750:intron | 40.0% | |
| TCTGTGTAGGTACACTTTAG+AGG | - | chr5_4:49604247-49604266 | Msa0855750:intron | 40.0% | |
| !! | GGCTTATTGAGTTGAGGTAA+TGG | - | chr5_4:49604561-49604580 | Msa0855750:intron | 40.0% |
| GAACATGTCTCAAACTGATC+AGG | - | chr5_4:49604814-49604833 | Msa0855750:intron | 40.0% | |
| GTTAGCGACTGTTAATTCAC+GGG | - | chr5_4:49605023-49605042 | Msa0855750:intron | 40.0% | |
| TCTCTAGCTGAATTGGTTAG+AGG | - | chr5_4:49605047-49605066 | Msa0855750:intron | 40.0% | |
| CTCTAGCTGAATTGGTTAGA+GGG | - | chr5_4:49605048-49605067 | Msa0855750:intron | 40.0% | |
| TCTTGCAAAGTGACTACCAA+TGG | + | chr5_4:49605745-49605764 | None:intergenic | 40.0% | |
| ! | GCAAGAGATAAGGTTGTTTC+AGG | - | chr5_4:49605759-49605778 | Msa0855750:intron | 40.0% |
| !! | AGTTTGTTGCTCTCTTCTCA+TGG | - | chr5_4:49606115-49606134 | Msa0855750:intron | 40.0% |
| GCCATTACTATTTGCATGAC+AGG | - | chr5_4:49606144-49606163 | Msa0855750:intron | 40.0% | |
| TCAAGTTCATATTGCTCACC+TGG | + | chr5_4:49606309-49606328 | None:intergenic | 40.0% | |
| TAGTGTGAGAGAACCAATCT+AGG | + | chr5_4:49606525-49606544 | None:intergenic | 40.0% | |
| !!! | ACAGGTTGGTGTTTTAAGGT+TGG | - | chr5_4:49606589-49606608 | Msa0855750:intron | 40.0% |
| CTCAAAATGGAGTTCTATGC+AGG | + | chr5_4:49606690-49606709 | None:intergenic | 40.0% | |
| TGACAAGAGTTGAAGAAGAG+TGG | + | chr5_4:49607248-49607267 | None:intergenic | 40.0% | |
| AAATCAAAGCACAGGAGAAG+AGG | - | chr5_4:49607504-49607523 | Msa0855750:intron | 40.0% | |
| AATCAAAGCACAGGAGAAGA+GGG | - | chr5_4:49607505-49607524 | Msa0855750:intron | 40.0% | |
| GGGAGAAAATTCATCTGATC+CGG | - | chr5_4:49607525-49607544 | Msa0855750:intron | 40.0% | |
| TGATTTCTGCAATCTCAAGC+AGG | + | chr5_4:49607564-49607583 | None:intergenic | 40.0% | |
| TCAAGCAAACACACATGTGA+AGG | + | chr5_4:49607672-49607691 | None:intergenic | 40.0% | |
| GGAAGAGATGAATGAAGGAC+AGG | - | chr5_4:49601394-49601413 | Msa0855750:CDS | 45.0% | |
| TGTTGTGTTCATACGAGAGC+GGG | + | chr5_4:49601497-49601516 | None:intergenic | 45.0% | |
| GTGTTGTGTTCATACGAGAG+CGG | + | chr5_4:49601498-49601517 | None:intergenic | 45.0% | |
| TTGGAAACTGATCATGGGAC+CGG | + | chr5_4:49601962-49601981 | None:intergenic | 45.0% | |
| !!! | TTAGGTTTTGGCTCCTAGGA+TGG | - | chr5_4:49602187-49602206 | Msa0855750:CDS | 45.0% |
| !!! | TAGGTTTTGGCTCCTAGGAT+GGG | - | chr5_4:49602188-49602207 | Msa0855750:CDS | 45.0% |
| ! | GGAAGTGTAGAGCAGAAATG+AGG | + | chr5_4:49602245-49602264 | None:intergenic | 45.0% |
| AACCAAATGGTGTCTACTCC+AGG | + | chr5_4:49602269-49602288 | None:intergenic | 45.0% | |
| ACAAAGGATTGCCTCTCAAG+TGG | - | chr5_4:49602294-49602313 | Msa0855750:intron | 45.0% | |
| TAGCATGGTTTCTTCCACGT+CGG | + | chr5_4:49602683-49602702 | None:intergenic | 45.0% | |
| !! | CGATGGTGGAATATAGCGAA+AGG | - | chr5_4:49602727-49602746 | Msa0855750:intron | 45.0% |
| GCCGCAATGGCATGTTATTA+TGG | + | chr5_4:49602764-49602783 | None:intergenic | 45.0% | |
| TTGAAAAGTGATGCGCACCA+TGG | + | chr5_4:49602798-49602817 | None:intergenic | 45.0% | |
| ! | GTGTTGTTAAATGGCAGCCA+TGG | + | chr5_4:49602875-49602894 | None:intergenic | 45.0% |
| GCCCTCAAATTGTAAGGGTT+GGG | + | chr5_4:49602960-49602979 | None:intergenic | 45.0% | |
| AGCCCTCAAATTGTAAGGGT+TGG | + | chr5_4:49602961-49602980 | None:intergenic | 45.0% | |
| AGGCAGCCCTCAAATTGTAA+GGG | + | chr5_4:49602965-49602984 | None:intergenic | 45.0% | |
| AAGGCAGCCCTCAAATTGTA+AGG | + | chr5_4:49602966-49602985 | None:intergenic | 45.0% | |
| GGACTAAATTGCTTAACCCG+AGG | - | chr5_4:49603546-49603565 | Msa0855750:intron | 45.0% | |
| CAAGTGAAGGGGGAGATTAA+AGG | + | chr5_4:49603697-49603716 | None:intergenic | 45.0% | |
| !! | TTTTTGGCCATGGCTTGTAC+AGG | - | chr5_4:49603873-49603892 | Msa0855750:intron | 45.0% |
| GTTAAATTCCACGGCCTTTC+TGG | + | chr5_4:49603941-49603960 | None:intergenic | 45.0% | |
| GATTGAAATCTGCTTGGGGA+AGG | - | chr5_4:49604073-49604092 | Msa0855750:intron | 45.0% | |
| TTGAAATCTGCTTGGGGAAG+GGG | - | chr5_4:49604075-49604094 | Msa0855750:intron | 45.0% | |
| AATCTGCGTACTCTCTGTGT+AGG | - | chr5_4:49604234-49604253 | Msa0855750:CDS | 45.0% | |
| GATGTCAATGGACAGGGTTA+TGG | - | chr5_4:49604501-49604520 | Msa0855750:intron | 45.0% | |
| !! | GACAGGGTTATGGTTCTAGA+GGG | - | chr5_4:49604511-49604530 | Msa0855750:intron | 45.0% |
| CATGTCTCAAACTGATCAGG+TGG | - | chr5_4:49604817-49604836 | Msa0855750:intron | 45.0% | |
| !!! | CTCTGGGGCTCTGTTTTAAA+TGG | - | chr5_4:49604842-49604861 | Msa0855750:intron | 45.0% |
| AAAACCCCATTTAGGTGCGT+AGG | - | chr5_4:49604936-49604955 | Msa0855750:intron | 45.0% | |
| TCATCCTACGCACCTAAATG+GGG | + | chr5_4:49604943-49604962 | None:intergenic | 45.0% | |
| CTCATCCTACGCACCTAAAT+GGG | + | chr5_4:49604944-49604963 | None:intergenic | 45.0% | |
| AGCTGAATTGGTTAGAGGGA+AGG | - | chr5_4:49605052-49605071 | Msa0855750:intron | 45.0% | |
| GCTGAATTGGTTAGAGGGAA+GGG | - | chr5_4:49605053-49605072 | Msa0855750:intron | 45.0% | |
| AATTGGTTAGAGGGAAGGGA+GGG | - | chr5_4:49605057-49605076 | Msa0855750:intron | 45.0% | |
| AAGGAAGGGAGACTATTTCC+AGG | - | chr5_4:49605096-49605115 | Msa0855750:CDS | 45.0% | |
| AGGAAGGGAGACTATTTCCA+GGG | - | chr5_4:49605097-49605116 | Msa0855750:CDS | 45.0% | |
| GAAGTGGAGTTCTCTTGTGT+TGG | - | chr5_4:49605142-49605161 | Msa0855750:intron | 45.0% | |
| ! | AGTTTGTTTGTGGATCGCCA+AGG | - | chr5_4:49605320-49605339 | Msa0855750:intron | 45.0% |
| ACACAGGCTATATCTGCCAT+TGG | - | chr5_4:49605726-49605745 | Msa0855750:intron | 45.0% | |
| CTTAGATGACACCCGTCTAT+AGG | + | chr5_4:49606181-49606200 | None:intergenic | 45.0% | |
| TTTCTGCAATCTCAAGCAGG+TGG | + | chr5_4:49607561-49607580 | None:intergenic | 45.0% | |
| ATCAAGTGTGTACGCGTTCA+AGG | - | chr5_4:49607580-49607599 | Msa0855750:CDS | 45.0% | |
| TCAAGTGTGTACGCGTTCAA+GGG | - | chr5_4:49607581-49607600 | Msa0855750:CDS | 45.0% | |
| TCAAGGGATAGATCTGCCTT+TGG | - | chr5_4:49607597-49607616 | Msa0855750:CDS | 45.0% | |
| !!! | TTAATTCTAAAAAAATTAAA+GGG | + | chr5_4:49604620-49604639 | None:intergenic | 5.0% |
| GGACAGGAATACGTATGGCA+AGG | - | chr5_4:49601410-49601429 | Msa0855750:CDS | 50.0% | |
| !!! | AGGTTTTGGCTCCTAGGATG+GGG | - | chr5_4:49602189-49602208 | Msa0855750:CDS | 50.0% |
| AAAGGCAAGTACCCCATCCT+AGG | + | chr5_4:49602203-49602222 | None:intergenic | 50.0% | |
| TTCTGCTCTACACTTCCTCC+TGG | - | chr5_4:49602248-49602267 | Msa0855750:intron | 50.0% | |
| CAAATGGTGTCTACTCCAGG+AGG | + | chr5_4:49602266-49602285 | None:intergenic | 50.0% | |
| CTCCTGGAGTAGACACCATT+TGG | - | chr5_4:49602264-49602283 | Msa0855750:intron | 50.0% | |
| TAACATGCCATTGCGGCCTA+TGG | - | chr5_4:49602767-49602786 | Msa0855750:CDS | 50.0% | |
| AAAAGTGATGCGCACCATGG+CGG | + | chr5_4:49602795-49602814 | None:intergenic | 50.0% | |
| TCCTCCATGCTATTCTGCCA+TGG | - | chr5_4:49602844-49602863 | Msa0855750:CDS | 50.0% | |
| ACCATGGCAGAATAGCATGG+AGG | + | chr5_4:49602848-49602867 | None:intergenic | 50.0% | |
| GCAACCATGGCAGAATAGCA+TGG | + | chr5_4:49602851-49602870 | None:intergenic | 50.0% | |
| ATTCTGCCATGGTTGCACCA+TGG | - | chr5_4:49602855-49602874 | Msa0855750:intron | 50.0% | |
| TGAAATCTGCTTGGGGAAGG+GGG | - | chr5_4:49604076-49604095 | Msa0855750:intron | 50.0% | |
| ACACTGTCTTCACCGTCACA+CGG | + | chr5_4:49604295-49604314 | None:intergenic | 50.0% | |
| ACGGTGAAGACAGTGTGAAG+TGG | - | chr5_4:49604299-49604318 | Msa0855750:intron | 50.0% | |
| !! | GGACAGGGTTATGGTTCTAG+AGG | - | chr5_4:49604510-49604529 | Msa0855750:intron | 50.0% |
| AAACTGATCAGGTGGAGCTC+TGG | - | chr5_4:49604825-49604844 | Msa0855750:intron | 50.0% | |
| AACTGATCAGGTGGAGCTCT+GGG | - | chr5_4:49604826-49604845 | Msa0855750:intron | 50.0% | |
| CCTCATCCTACGCACCTAAA+TGG | + | chr5_4:49604945-49604964 | None:intergenic | 50.0% | |
| CCATTTAGGTGCGTAGGATG+AGG | - | chr5_4:49604942-49604961 | Msa0855750:intron | 50.0% | |
| CACGGGATCTCTAGCTGAAT+TGG | - | chr5_4:49605040-49605059 | Msa0855750:intron | 50.0% | |
| GAATTGGTTAGAGGGAAGGG+AGG | - | chr5_4:49605056-49605075 | Msa0855750:intron | 50.0% | |
| GGGAGACTATTTCCAGGGTA+TGG | - | chr5_4:49605102-49605121 | Msa0855750:CDS | 50.0% | |
| CCTCATAATCTGCCATACCC+TGG | + | chr5_4:49605117-49605136 | None:intergenic | 50.0% | |
| CCAGGGTATGGCAGATTATG+AGG | - | chr5_4:49605114-49605133 | Msa0855750:CDS | 50.0% | |
| GACATGTATGCTCCAGCTTG+AGG | - | chr5_4:49605885-49605904 | Msa0855750:intron | 50.0% | |
| CCAACAAACACTCCTCAAGC+TGG | + | chr5_4:49605900-49605919 | None:intergenic | 50.0% | |
| !! | CCAGCTTGAGGAGTGTTTGT+TGG | - | chr5_4:49605897-49605916 | Msa0855750:intron | 50.0% |
| CGGAGAGAGAGAGAGAGATC+TGG | - | chr5_4:49601373-49601392 | Msa0855750:CDS | 55.0% | |
| TGTGTTCATACGAGAGCGGG+TGG | + | chr5_4:49601494-49601513 | None:intergenic | 55.0% | |
| ! | GGCATAGCTTTTGTCCACCC+TGG | + | chr5_4:49602625-49602644 | None:intergenic | 55.0% |
| TGGTTTCTTCCACGTCGGTG+TGG | + | chr5_4:49602678-49602697 | None:intergenic | 55.0% | |
| !! | GTAGAGATAGGGCACTGTCC+TGG | - | chr5_4:49603013-49603032 | Msa0855750:intron | 55.0% |
| CTGATCGACTGATCCTAGCC+AGG | + | chr5_4:49603034-49603053 | None:intergenic | 55.0% | |
| GTATGGAACCAGAAAGGCCG+TGG | - | chr5_4:49603930-49603949 | Msa0855750:intron | 55.0% | |
| ACTGATCAGGTGGAGCTCTG+GGG | - | chr5_4:49604827-49604846 | Msa0855750:intron | 55.0% | |
| GTTCATACGAGAGCGGGTGG+AGG | + | chr5_4:49601491-49601510 | None:intergenic | 60.0% | |
| TGTTCAGCTCCACACCGACG+TGG | - | chr5_4:49602666-49602685 | Msa0855750:intron | 60.0% | |
| TGGCAGCCATGGTGCAACCA+TGG | + | chr5_4:49602864-49602883 | None:intergenic | 60.0% | |
| !! | GATAGGGCACTGTCCTGGCT+AGG | - | chr5_4:49603018-49603037 | Msa0855750:intron | 60.0% |
| TCCAGCAGCTTCAGCATCCC+CGG | + | chr5_4:49606277-49606296 | None:intergenic | 60.0% | |
| GCTGCTGGACAAGTGAAGCC+AGG | - | chr5_4:49606288-49606307 | Msa0855750:intron | 60.0% | |
| AGCAGGTGGCAAGATGACGC+CGG | + | chr5_4:49607547-49607566 | None:intergenic | 60.0% | |
| GGGTGGAGGAGGAGGAAGAG+TGG | + | chr5_4:49601477-49601496 | None:intergenic | 65.0% | |
| CATACGAGAGCGGGTGGAGG+AGG | + | chr5_4:49601488-49601507 | None:intergenic | 65.0% | |
| ACCGGGGATGCTGAAGCTGC+TGG | - | chr5_4:49606273-49606292 | Msa0855750:intron | 65.0% | |
| ACGAGAGCGGGTGGAGGAGG+AGG | + | chr5_4:49601485-49601504 | None:intergenic | 70.0% | |
| GGCGGCGCCATAGGCCGCAA+TGG | + | chr5_4:49602777-49602796 | None:intergenic | 75.0% | |
| TGCGGCCTATGGCGCCGCCA+TGG | - | chr5_4:49602778-49602797 | Msa0855750:CDS | 75.0% | |
| GCGCACCATGGCGGCGCCAT+AGG | + | chr5_4:49602786-49602805 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 49601319 | 49607720 | 49601319 | ID=Msa0855750;Name=Msa0855750 |
| chr5_4 | mRNA | 49601319 | 49607720 | 49601319 | ID=Msa0855750-mRNA-1;Parent=Msa0855750;Name=Msa0855750-mRNA-1;_AED=0.19;_eAED=0.20;_QI=82|0.85|0.87|1|1|1|8|0|346 |
| chr5_4 | exon | 49601319 | 49601599 | 49601319 | ID=Msa0855750-mRNA-1:exon:15582;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49602089 | 49602232 | 49602089 | ID=Msa0855750-mRNA-1:exon:15581;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49602730 | 49602873 | 49602730 | ID=Msa0855750-mRNA-1:exon:15580;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49604176 | 49604263 | 49604176 | ID=Msa0855750-mRNA-1:exon:15579;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49604694 | 49604783 | 49604694 | ID=Msa0855750-mRNA-1:exon:15578;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49605078 | 49605144 | 49605078 | ID=Msa0855750-mRNA-1:exon:15577;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49606724 | 49606848 | 49606724 | ID=Msa0855750-mRNA-1:exon:15576;Parent=Msa0855750-mRNA-1 |
| chr5_4 | exon | 49607537 | 49607720 | 49607537 | ID=Msa0855750-mRNA-1:exon:15575;Parent=Msa0855750-mRNA-1 |
| chr5_4 | five_prime_UTR | 49607639 | 49607720 | 49607639 | ID=Msa0855750-mRNA-1:five_prime_utr;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49607537 | 49607638 | 49607537 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49606724 | 49606848 | 49606724 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49605078 | 49605144 | 49605078 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49604694 | 49604783 | 49604694 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49604176 | 49604263 | 49604176 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49602730 | 49602873 | 49602730 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49602089 | 49602232 | 49602089 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| chr5_4 | CDS | 49601319 | 49601599 | 49601319 | ID=Msa0855750-mRNA-1:cds;Parent=Msa0855750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
