AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815550 MtrunA17_Chr5g0433811 89.891 366 21 4 1 355 1 361 0.0 623
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815550 AT5G17290.1 57.880 349 132 3 2 350 3 336 3.19e-152 432

Find 84 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAATTCCACGGCCTTTC+TGG 0.094375 5_3:+49171432 None:intergenic
TATTTGCATGACAGGTAATT+TGG 0.166892 5_3:-49169218 Msa0815550:intron
TAGGCTGCATATGTAATAAA+TGG 0.292955 5_3:-49170597 Msa0815550:CDS
ATGCTCCAAACATTGATAAC+TGG 0.315581 5_3:-49168503 Msa0815550:CDS
TGTAAAATAGAAAACGAATT+AGG 0.323570 5_3:+49167641 None:intergenic
ACATGACTTACAATCTTCAT+TGG 0.330038 5_3:+49168431 None:intergenic
TTGTGAATCACCCAAGAAAA+AGG 0.333980 5_3:+49167845 None:intergenic
CACGGAAGCAATAAATTACT+TGG 0.340365 5_3:+49171096 None:intergenic
CTCCTGGAGTAGACACCATT+TGG 0.349281 5_3:-49173106 Msa0815550:CDS
ACCCTTCTTCTTCTACGTTC+TGG 0.353285 5_3:+49174050 None:intergenic
TTCCCGTTCGTTTATATTTG+TGG 0.360359 5_3:-49168557 Msa0815550:CDS
AAACTGATCAGGTGGAGCTC+TGG 0.371178 5_3:-49170545 Msa0815550:CDS
AACTGATCAGGTGGAGCTCT+GGG 0.373153 5_3:-49170544 Msa0815550:CDS
AAAGTGTAATATATGTTAAC+TGG 0.385646 5_3:-49167614 Msa0815550:three_prime_UTR
TTGTCCCAGTTATCAATGTT+TGG 0.388360 5_3:+49168498 None:intergenic
ATCTTCATTGGGAATCTCAT+TGG 0.393444 5_3:+49168443 None:intergenic
CTTAGATGACACCCGTCTAT+AGG 0.394576 5_3:+49169192 None:intergenic
ATCAAGTGTGTACGCGTTCA+AGG 0.420354 5_3:-49167890 Msa0815550:CDS
TTCTGCTCTACACTTCCTCC+TGG 0.426993 5_3:-49173122 Msa0815550:CDS
ACGAGAGCGGGTGGAGGAGG+AGG 0.438437 5_3:+49173888 None:intergenic
CACATGTGAAGGAAATAATC+AGG 0.447656 5_3:+49167812 None:intergenic
GGGTGGAGGAGGAGGAAGAG+TGG 0.448769 5_3:+49173896 None:intergenic
ATCTCATTGGAAATCTCAAC+AGG 0.465730 5_3:+49168456 None:intergenic
GTCCACAAATATAAACGAAC+GGG 0.466896 5_3:+49168555 None:intergenic
ACCGGGGATGCTGAAGCTGC+TGG 0.471906 5_3:-49169097 Msa0815550:CDS
CATGACTTACAATCTTCATT+GGG 0.477472 5_3:+49168432 None:intergenic
GGGAGAAAATTCATCTGATC+CGG 0.477934 5_3:-49167945 Msa0815550:CDS
TCTGTGTAGGTACACTTTAG+AGG 0.480922 5_3:-49171123 Msa0815550:intron
GAACATGTCTCAAACTGATC+AGG 0.487136 5_3:-49170556 Msa0815550:CDS
GTTCTTACTGTTAAATTCCA+CGG 0.494033 5_3:+49171423 None:intergenic
AAAGGCAAGTACCCCATCCT+AGG 0.499221 5_3:+49173170 None:intergenic
TATATAATAGATGTACAGAA+TGG 0.499633 5_3:-49167687 Msa0815550:three_prime_UTR
CATACGAGAGCGGGTGGAGG+AGG 0.512710 5_3:+49173885 None:intergenic
AACCAAATGGTGTCTACTCC+AGG 0.513115 5_3:+49173104 None:intergenic
TCCAGCAGCTTCAGCATCCC+CGG 0.515498 5_3:+49169096 None:intergenic
TGCATCTAATTCATTAACAA+AGG 0.517718 5_3:+49167994 None:intergenic
TTGTACAGGTATATACCAAC+TGG 0.525553 5_3:-49171483 Msa0815550:intron
TCCTTTGTACTCAAACCAAA+TGG 0.525608 5_3:+49173091 None:intergenic
CACCAGAACGTAGAAGAAGA+AGG 0.528093 5_3:-49174052 Msa0815550:five_prime_UTR
GGAAGAGATGAATGAAGGAC+AGG 0.528153 5_3:-49173976 Msa0815550:exon
AAATCAAAGCACAGGAGAAG+AGG 0.530580 5_3:-49167966 Msa0815550:CDS
CTTTATCAACTCACTGAAAG+AGG 0.532828 5_3:-49171046 Msa0815550:intron
TGATTTCTGCAATCTCAAGC+GGG 0.539915 5_3:+49167909 None:intergenic
AGAAGCCAATGCTGTGCAGT+AGG 0.540359 5_3:-49167771 Msa0815550:exon
TGCTCCAAACATTGATAACT+GGG 0.544293 5_3:-49168502 Msa0815550:CDS
AATTTATTGCTTCCGTGTGA+CGG 0.548361 5_3:-49171090 Msa0815550:CDS
TTATCCCTACTGCACAGCAT+TGG 0.549021 5_3:+49167766 None:intergenic
TCATGAAGATGAATTTGAAG+AGG 0.549239 5_3:+49173930 None:intergenic
TTGATTTCTGCAATCTCAAG+CGG 0.552377 5_3:+49167908 None:intergenic
AATCAAAGCACAGGAGAAGA+GGG 0.552556 5_3:-49167965 Msa0815550:CDS
ACTAAATCTGAACAAAGTAC+CGG 0.560549 5_3:-49169115 Msa0815550:CDS
GGAAGTGTAGAGCAGAAATG+AGG 0.560587 5_3:+49173128 None:intergenic
GATCTGGAAGAGATGAATGA+AGG 0.560736 5_3:-49173981 Msa0815550:exon
CTAAATCTGAACAAAGTACC+GGG 0.567854 5_3:-49169114 Msa0815550:CDS
GTAATTTGGAATCCTATAGA+CGG 0.573284 5_3:-49169204 Msa0815550:CDS
TAATTTGGAATCCTATAGAC+GGG 0.573723 5_3:-49169203 Msa0815550:CDS
GTATGGAACCAGAAAGGCCG+TGG 0.574803 5_3:-49171440 Msa0815550:CDS
TGTTGTGTTCATACGAGAGC+GGG 0.576326 5_3:+49173876 None:intergenic
TCAAGTGTGTACGCGTTCAA+GGG 0.580826 5_3:-49167889 Msa0815550:CDS
GAAGCCAATGCTGTGCAGTA+GGG 0.581631 5_3:-49167770 Msa0815550:exon
GCAAACATAAATCAAAGCAC+AGG 0.582940 5_3:-49167974 Msa0815550:CDS
TCAAGCAAACACACATGTGA+AGG 0.583105 5_3:+49167801 None:intergenic
TCAAGGGATAGATCTGCCCT+TGG 0.584571 5_3:-49167873 Msa0815550:CDS
ACCATTTGGTTTGAGTACAA+AGG 0.584788 5_3:-49173092 Msa0815550:CDS
CATGTCTCAAACTGATCAGG+TGG 0.589699 5_3:-49170553 Msa0815550:CDS
GTTCATACGAGAGCGGGTGG+AGG 0.598729 5_3:+49173882 None:intergenic
AGTCCACAAATATAAACGAA+CGG 0.600750 5_3:+49168554 None:intergenic
ATGAAGGACAGGAATACGTA+TGG 0.609820 5_3:-49173965 Msa0815550:CDS
ACCAGAACGTAGAAGAAGAA+GGG 0.620498 5_3:-49174051 Msa0815550:five_prime_UTR
ACACTGTCTTCACCGTCACA+CGG 0.627485 5_3:+49171078 None:intergenic
AGCGGGTGGCAAGATGACGC+CGG 0.632741 5_3:+49167926 None:intergenic
TGTGTTCATACGAGAGCGGG+TGG 0.632851 5_3:+49173879 None:intergenic
ACAAAGGATTGCCTCTCAAG+TGG 0.632964 5_3:-49173076 Msa0815550:intron
ACGGAAGCAATAAATTACTT+GGG 0.633796 5_3:+49171097 None:intergenic
TTCAACAGAGAAATCAACAA+AGG 0.638419 5_3:+49173152 None:intergenic
GGACAGGAATACGTATGGCA+AGG 0.638744 5_3:-49173960 Msa0815550:CDS
ACGGTGAAGACAGTGTGAAG+TGG 0.646133 5_3:-49171071 Msa0815550:CDS
ACTACACAATACCACTTGAG+AGG 0.646158 5_3:+49173065 None:intergenic
ACTGATCAGGTGGAGCTCTG+GGG 0.664570 5_3:-49170543 Msa0815550:CDS
TTTCTGCAATCTCAAGCGGG+TGG 0.665473 5_3:+49167912 None:intergenic
CAAATGGTGTCTACTCCAGG+AGG 0.700830 5_3:+49173107 None:intergenic
TTGAAGTTGATCAAGAACTG+CGG 0.715913 5_3:-49174017 Msa0815550:five_prime_UTR
GTGTTGTGTTCATACGAGAG+CGG 0.728695 5_3:+49173875 None:intergenic
TAAATCTGAACAAAGTACCG+GGG 0.740964 5_3:-49169113 Msa0815550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAATAAAAAATGTATTT+TGG - chr5_3:49168088-49168107 Msa0815550:intron 10.0%
!!! TTTATTGTATTATGTTTTAT+TGG - chr5_3:49169243-49169262 Msa0815550:intron 10.0%
!!! TTTAATATTGTGATTTTTTT+TGG - chr5_3:49170111-49170130 Msa0815550:intron 10.0%
!!! GTTAATTCTAAAAAAATTAA+AGG + chr5_3:49170875-49170894 None:intergenic 10.0%
!!! TGTGATATGTTATTTTTTAT+TGG - chr5_3:49168305-49168324 Msa0815550:intron 15.0%
!! TAAAATTGTAATGCTAAATT+TGG + chr5_3:49168723-49168742 None:intergenic 15.0%
!!! ATTTAGCATTACAATTTTAA+AGG - chr5_3:49168724-49168743 Msa0815550:intron 15.0%
!! AACATAATACAATAAAACAA+AGG + chr5_3:49169239-49169258 None:intergenic 15.0%
!!! ATTTTAGCATTGAAATTATA+AGG - chr5_3:49169508-49169527 Msa0815550:intron 15.0%
!!! TTTTAGCATTGAAATTATAA+GGG - chr5_3:49169509-49169528 Msa0815550:intron 15.0%
!! TATTGTATTGTATGTTTAAT+TGG - chr5_3:49169848-49169867 Msa0815550:intron 15.0%
!! ATTGTATTGTATGTTTAATT+GGG - chr5_3:49169849-49169868 Msa0815550:intron 15.0%
!!! AACTGGATTTTAATTTTTTA+TGG - chr5_3:49171004-49171023 Msa0815550:intron 15.0%
!! AAAAGTTATTAAAATACACA+CGG - chr5_3:49171823-49171842 Msa0815550:intron 15.0%
!! AACAAAAAGTAAGTTTAATA+TGG + chr5_3:49173021-49173040 None:intergenic 15.0%
!!! TTTTGTTTTTTGTTGTTTTA+TGG - chr5_3:49173439-49173458 Msa0815550:intron 15.0%
!!! GTTTTTTCAGTAAAATATAA+AGG + chr5_3:49173899-49173918 None:intergenic 15.0%
!! ATAAAAATAAAACGAGAAAG+AGG + chr5_3:49167783-49167802 None:intergenic 20.0%
!! TAAAACTTTATGTATTGTTC+TGG - chr5_3:49167986-49168005 Msa0815550:CDS 20.0%
!!! CAAGAATTCATGTTTTTATT+CGG - chr5_3:49168170-49168189 Msa0815550:intron 20.0%
!!! TTTTTGTAACTCGTTTAATT+TGG + chr5_3:49168235-49168254 None:intergenic 20.0%
!!! TTGATTTGCTAAAAAAACAA+GGG + chr5_3:49168273-49168292 None:intergenic 20.0%
!!! TTTGATTTGCTAAAAAAACA+AGG + chr5_3:49168274-49168293 None:intergenic 20.0%
!!! CATTTTGTTTGTGATTTTTT+AGG - chr5_3:49168423-49168442 Msa0815550:intron 20.0%
!!! TAAATCGTTATTTTAGTTGT+TGG - chr5_3:49168604-49168623 Msa0815550:intron 20.0%
!! ATATCAATCAATTTATAGCA+TGG + chr5_3:49168952-49168971 None:intergenic 20.0%
!! ATAAAGGGAGATATATTAAA+GGG + chr5_3:49169357-49169376 None:intergenic 20.0%
!! AATAAAGGGAGATATATTAA+AGG + chr5_3:49169358-49169377 None:intergenic 20.0%
!! TTTAATATATCTCCCTTTAT+TGG - chr5_3:49169357-49169376 Msa0815550:intron 20.0%
!!! CTGTTTTAAAAACCAATAAA+GGG + chr5_3:49169372-49169391 None:intergenic 20.0%
!!! ACTGTTTTAAAAACCAATAA+AGG + chr5_3:49169373-49169392 None:intergenic 20.0%
!!! TTTCTATTTTGCAAATTTGA+GGG + chr5_3:49169550-49169569 None:intergenic 20.0%
!!! ATTTCTATTTTGCAAATTTG+AGG + chr5_3:49169551-49169570 None:intergenic 20.0%
!!! GATTATTTGAGTTAATATGT+AGG - chr5_3:49169668-49169687 Msa0815550:intron 20.0%
!!! ACTAAAAGAAATTTTGATTC+AGG - chr5_3:49169717-49169736 Msa0815550:intron 20.0%
!! TTGTATTGTATGTTTAATTG+GGG - chr5_3:49169850-49169869 Msa0815550:intron 20.0%
!! TTTGTTTCATAATTGTTACA+AGG + chr5_3:49170306-49170325 None:intergenic 20.0%
!!! GTTATTTTAGTCTTTTTCAA+TGG - chr5_3:49170697-49170716 Msa0815550:intron 20.0%
!!! AAATTTTCTCGATAGTTAAT+GGG + chr5_3:49170917-49170936 None:intergenic 20.0%
!! AATTTGTAATGTCATTATGA+TGG - chr5_3:49170932-49170951 Msa0815550:intron 20.0%
!!! GGATTTTAATTTTTTATGGT+AGG - chr5_3:49171008-49171027 Msa0815550:intron 20.0%
!! AAACAACAAAATAAAAAGGA+AGG - chr5_3:49171335-49171354 Msa0815550:intron 20.0%
!! AACAACAAAATAAAAAGGAA+GGG - chr5_3:49171336-49171355 Msa0815550:intron 20.0%
!!! TATTTATTCCCTTTTTGTTT+TGG - chr5_3:49171447-49171466 Msa0815550:CDS 20.0%
!!! ACATTAAACATGTTGAATTT+TGG - chr5_3:49171690-49171709 Msa0815550:intron 20.0%
!! ACATGATACAATATTTGTTT+AGG + chr5_3:49171762-49171781 None:intergenic 20.0%
!! ATATTGTATCATGTACAAAT+TGG - chr5_3:49171768-49171787 Msa0815550:intron 20.0%
!! ATAATTCAACAAAAGAAATG+TGG - chr5_3:49171952-49171971 Msa0815550:intron 20.0%
!! TGAATAAAGTTAAACTGAAA+AGG - chr5_3:49172705-49172724 Msa0815550:intron 20.0%
!! TGGAAATATATTGCATAAAA+GGG + chr5_3:49172808-49172827 None:intergenic 20.0%
!! TTGGAAATATATTGCATAAA+AGG + chr5_3:49172809-49172828 None:intergenic 20.0%
!!! TTTAAGGTTGGATTATTTTA+TGG - chr5_3:49172855-49172874 Msa0815550:intron 20.0%
!! AAAAGTAAGTTTAATATGGA+TGG + chr5_3:49173017-49173036 None:intergenic 20.0%
!! TAACAAACAGTTATTAGAAA+GGG + chr5_3:49173531-49173550 None:intergenic 20.0%
!! ATAACAAACAGTTATTAGAA+AGG + chr5_3:49173532-49173551 None:intergenic 20.0%
!! TATATAATAGATGTACAGAA+TGG - chr5_3:49173937-49173956 Msa0815550:CDS 20.0%
!! TGTAAAATAGAAAACGAATT+AGG + chr5_3:49173986-49174005 None:intergenic 20.0%
!! AAAGTGTAATATATGTTAAC+TGG - chr5_3:49174010-49174029 Msa0815550:five_prime_UTR 20.0%
! AAATTGCAGCAAATGTAAAA+AGG + chr5_3:49167898-49167917 None:intergenic 25.0%
! GTAAGCAAGAAAATCAATAA+TGG + chr5_3:49167942-49167961 None:intergenic 25.0%
!! TTGATAGTCTATTATACTCT+TGG - chr5_3:49168116-49168135 Msa0815550:intron 25.0%
!! TTAATTTGGAAACTGATCAT+GGG + chr5_3:49168221-49168240 None:intergenic 25.0%
!!! TTTAATTTGGAAACTGATCA+TGG + chr5_3:49168222-49168241 None:intergenic 25.0%
!!! TGGAAGTTATTGAAGTATTT+TGG - chr5_3:49168360-49168379 Msa0815550:intron 25.0%
!!! GTTTGTGATTTTTTAGGTTT+TGG - chr5_3:49168429-49168448 Msa0815550:intron 25.0%
!!! TTTTAGTTGTTGGAATTCTA+AGG - chr5_3:49168614-49168633 Msa0815550:intron 25.0%
! TTTAGTTGTTGGAATTCTAA+GGG - chr5_3:49168615-49168634 Msa0815550:intron 25.0%
! CCAATATAGTTCAATTTAAG+AGG + chr5_3:49168683-49168702 None:intergenic 25.0%
! CCTCTTAAATTGAACTATAT+TGG - chr5_3:49168680-49168699 Msa0815550:intron 25.0%
! ACTTGAATAATCTATTGTTG+CGG + chr5_3:49168766-49168785 None:intergenic 25.0%
!!! GATTATTCAAGTTGATATGT+AGG - chr5_3:49168774-49168793 Msa0815550:intron 25.0%
!!! TAGGTTTTCATTGATTTTGA+TGG - chr5_3:49168793-49168812 Msa0815550:intron 25.0%
!!! TAAAGAGGTATTTTGATTGA+GGG - chr5_3:49168827-49168846 Msa0815550:intron 25.0%
! TTTGATTAACTGTAAAACCA+GGG - chr5_3:49168859-49168878 Msa0815550:intron 25.0%
!! TATCAATCAGTGTTGTTAAA+TGG + chr5_3:49169138-49169157 None:intergenic 25.0%
! AACTGACATTGTTCAATTAA+GGG + chr5_3:49169579-49169598 None:intergenic 25.0%
! TAACTGACATTGTTCAATTA+AGG + chr5_3:49169580-49169599 None:intergenic 25.0%
! AAAAATCGTGATGCTAAATT+TGG + chr5_3:49169617-49169636 None:intergenic 25.0%
!! ATTTAGCATCACGATTTTTA+AGG - chr5_3:49169618-49169637 Msa0815550:intron 25.0%
!!! TTTGCTATTTCGTAAATTTG+AGG - chr5_3:49169778-49169797 Msa0815550:intron 25.0%
!!! TTGCTATTTCGTAAATTTGA+GGG - chr5_3:49169779-49169798 Msa0815550:intron 25.0%
! TGTATTAGAATGAACTTTCA+TGG - chr5_3:49169903-49169922 Msa0815550:intron 25.0%
!!! CTTGTTTTCAAAGCATTTTA+TGG - chr5_3:49169967-49169986 Msa0815550:intron 25.0%
!! TCTTTTTGATCTTTTGTGTA+TGG - chr5_3:49170167-49170186 Msa0815550:intron 25.0%
! ATGAAGTCTTCAATGAAATT+TGG - chr5_3:49170235-49170254 Msa0815550:intron 25.0%
! TGAAGTCTTCAATGAAATTT+GGG - chr5_3:49170236-49170255 Msa0815550:intron 25.0%
! GATTCACTACAAATGTTTAA+TGG - chr5_3:49170428-49170447 Msa0815550:intron 25.0%
! GATTTAATATAGCTATGCAT+TGG + chr5_3:49170472-49170491 None:intergenic 25.0%
! TAAGGAAATTATGATGTCAA+TGG - chr5_3:49170743-49170762 Msa0815550:intron 25.0%
! TTAGTGAAACTTGGTTAATT+AGG - chr5_3:49170794-49170813 Msa0815550:intron 25.0%
!! CAAATTTTCTCGATAGTTAA+TGG + chr5_3:49170918-49170937 None:intergenic 25.0%
!!! TTATTTTTACTGAGCTTAAC+TGG - chr5_3:49170987-49171006 Msa0815550:intron 25.0%
! GGGAAAACAACAAAATAAAA+AGG - chr5_3:49171331-49171350 Msa0815550:intron 25.0%
! ATACGATGATGATTAGAATT+CGG - chr5_3:49171504-49171523 Msa0815550:intron 25.0%
!! AGTTCAATTTGCTTTGATTT+AGG - chr5_3:49171600-49171619 Msa0815550:intron 25.0%
!! ATTTGCTTTGATTTAGGAAT+AGG - chr5_3:49171606-49171625 Msa0815550:intron 25.0%
!! GCATTTTATTCTAGACATAT+AGG - chr5_3:49171712-49171731 Msa0815550:intron 25.0%
! TGAAACTCAGTTTCTATTAT+GGG + chr5_3:49171739-49171758 None:intergenic 25.0%
! ATAGTGTCTATTGATATATG+TGG + chr5_3:49171894-49171913 None:intergenic 25.0%
!!! GAAATTGTAACTGATTTTGT+TGG - chr5_3:49172037-49172056 Msa0815550:intron 25.0%
! CTGACATATTTATTAGTAGA+GGG - chr5_3:49172077-49172096 Msa0815550:intron 25.0%
! TAATCTATTTGTAACATGCT+TGG - chr5_3:49172109-49172128 Msa0815550:intron 25.0%
! TAGATTAGTGCTAATCAATT+AGG - chr5_3:49172254-49172273 Msa0815550:intron 25.0%
!! ACATGATTTGCAGTAATTTA+TGG - chr5_3:49172341-49172360 Msa0815550:intron 25.0%
!! TCCTCTTTCATTTTCTTTTA+TGG - chr5_3:49172612-49172631 Msa0815550:intron 25.0%
! TCCATAAAAGAAAATGAAAG+AGG + chr5_3:49172616-49172635 None:intergenic 25.0%
!!! TGGATTATTTTATGGCATAT+TGG - chr5_3:49172863-49172882 Msa0815550:intron 25.0%
! TTAACATCTTCTATCTTGTT+AGG - chr5_3:49173039-49173058 Msa0815550:intron 25.0%
! TATTCAGTTTAAAAGCTCTA+TGG + chr5_3:49173233-49173252 None:intergenic 25.0%
!! TCATTAACAAAGGAATTTTC+TGG + chr5_3:49173623-49173642 None:intergenic 25.0%
! TGCATCTAATTCATTAACAA+AGG + chr5_3:49173633-49173652 None:intergenic 25.0%
!!! ATTTTCTAAAATCCCAATCA+AGG - chr5_3:49174039-49174058 Msa0815550:five_prime_UTR 25.0%
!!! TTTTCTAAAATCCCAATCAA+GGG - chr5_3:49174040-49174059 Msa0815550:five_prime_UTR 25.0%
TCATGAAGATGAATTTGAAG+AGG + chr5_3:49167697-49167716 None:intergenic 30.0%
TAAAACGAGAAAGAGGAAAA+GGG + chr5_3:49167776-49167795 None:intergenic 30.0%
ATAAAACGAGAAAGAGGAAA+AGG + chr5_3:49167777-49167796 None:intergenic 30.0%
! AAGTTCCGATTTTTACATCA+TGG - chr5_3:49167844-49167863 Msa0815550:CDS 30.0%
! AGTTCCGATTTTTACATCAT+GGG - chr5_3:49167845-49167864 Msa0815550:CDS 30.0%
AAACCCCATGATGTAAAAAT+CGG + chr5_3:49167852-49167871 None:intergenic 30.0%
GTAAAAAGGTGAAAACTTTG+AGG + chr5_3:49167884-49167903 None:intergenic 30.0%
TTGGATAAAAAGTTGTCTCA+TGG - chr5_3:49168135-49168154 Msa0815550:intron 30.0%
!! CATTTGCTACATGTTTTATC+CGG - chr5_3:49168194-49168213 Msa0815550:intron 30.0%
! TGGTGTGTATTTGTTGAATA+CGG - chr5_3:49168325-49168344 Msa0815550:intron 30.0%
TTCAACAGAGAAATCAACAA+AGG + chr5_3:49168475-49168494 None:intergenic 30.0%
! ATGGATGTTTTCTACTAAAG+AGG - chr5_3:49168812-49168831 Msa0815550:intron 30.0%
!!! CTAAAGAGGTATTTTGATTG+AGG - chr5_3:49168826-49168845 Msa0815550:intron 30.0%
GTTTGATTAACTGTAAAACC+AGG - chr5_3:49168858-49168877 Msa0815550:intron 30.0%
ATTGATATCAATGTTGTCGA+TGG - chr5_3:49168964-49168983 Msa0815550:intron 30.0%
!! TGTTTTATTGGTGTAGAGAT+AGG - chr5_3:49169255-49169274 Msa0815550:intron 30.0%
!! GTTTTATTGGTGTAGAGATA+GGG - chr5_3:49169256-49169275 Msa0815550:intron 30.0%
GTAACAATTGAAGAAAACCA+AGG + chr5_3:49169419-49169438 None:intergenic 30.0%
! AGCATTGAAATTATAAGGGT+CGG - chr5_3:49169513-49169532 Msa0815550:intron 30.0%
! AGGTTTTCCATTGAATTTGA+TGG - chr5_3:49169688-49169707 Msa0815550:intron 30.0%
TCAACAACCATCAAATTCAA+TGG + chr5_3:49169698-49169717 None:intergenic 30.0%
!! TTGACGTTCTTTTATTTCAG+AGG - chr5_3:49169751-49169770 Msa0815550:intron 30.0%
TAAACCAATATTTCAGTCCT+CGG + chr5_3:49169820-49169839 None:intergenic 30.0%
! TTCTAATACATCTGATTCGT+AGG + chr5_3:49169893-49169912 None:intergenic 30.0%
AAGGGTAAACAAATTGATAC+TGG + chr5_3:49169932-49169951 None:intergenic 30.0%
!! ATGCTTTGAAAACAAGTGAA+GGG + chr5_3:49169963-49169982 None:intergenic 30.0%
!! AATGCTTTGAAAACAAGTGA+AGG + chr5_3:49169964-49169983 None:intergenic 30.0%
ACAGTTGAAAAACATTGACA+AGG + chr5_3:49170004-49170023 None:intergenic 30.0%
!!! ATTGTGATTTTTTTTGGCCA+TGG - chr5_3:49170117-49170136 Msa0815550:intron 30.0%
GTTCTTACTGTTAAATTCCA+CGG + chr5_3:49170204-49170223 None:intergenic 30.0%
ACAAATGATTGAAATCTGCT+TGG - chr5_3:49170321-49170340 Msa0815550:intron 30.0%
CAAATGATTGAAATCTGCTT+GGG - chr5_3:49170322-49170341 Msa0815550:intron 30.0%
AAATGATTGAAATCTGCTTG+GGG - chr5_3:49170323-49170342 Msa0815550:intron 30.0%
!!! TTTTTTAGCTGAAATTCCGA+AGG - chr5_3:49170382-49170401 Msa0815550:intron 30.0%
! ATTTTCACATTAGTGACCTT+CGG + chr5_3:49170401-49170420 None:intergenic 30.0%
ACGGAAGCAATAAATTACTT+GGG + chr5_3:49170530-49170549 None:intergenic 30.0%
! TTTTATCATGCATAAGCATG+AGG + chr5_3:49170663-49170682 None:intergenic 30.0%
TGTATAGTATGAGGATAGTA+AGG - chr5_3:49170725-49170744 Msa0815550:intron 30.0%
AAATTATGATGTCAATGGAC+AGG - chr5_3:49170748-49170767 Msa0815550:intron 30.0%
AATTATGATGTCAATGGACA+GGG - chr5_3:49170749-49170768 Msa0815550:intron 30.0%
! TAATTAGGCTTATTGAGTTG+AGG - chr5_3:49170809-49170828 Msa0815550:intron 30.0%
TAGGCTGCATATGTAATAAA+TGG - chr5_3:49171027-49171046 Msa0815550:intron 30.0%
AGAATAGTGTTACACGAAAT+TGG - chr5_3:49171221-49171240 Msa0815550:intron 30.0%
GAATAGTGTTACACGAAATT+GGG - chr5_3:49171222-49171241 Msa0815550:intron 30.0%
!!! ATTCCCTTTTTGTTTTGGTA+TGG - chr5_3:49171452-49171471 Msa0815550:CDS 30.0%
ATGCCATACCAAAACAAAAA+GGG + chr5_3:49171458-49171477 None:intergenic 30.0%
TATGCCATACCAAAACAAAA+AGG + chr5_3:49171459-49171478 None:intergenic 30.0%
! GCATACACTTTTCAATATTC+AGG - chr5_3:49171474-49171493 Msa0815550:CDS 30.0%
TACGATGATGATTAGAATTC+GGG - chr5_3:49171505-49171524 Msa0815550:intron 30.0%
CTAGATAAGTATCTATAGCT+TGG + chr5_3:49171632-49171651 None:intergenic 30.0%
GTGAAACTCAGTTTCTATTA+TGG + chr5_3:49171740-49171759 None:intergenic 30.0%
! TATATTGTGCAACTTGTTCT+TGG + chr5_3:49171862-49171881 None:intergenic 30.0%
AAGAAATGTGGAAAAAACAC+AGG - chr5_3:49171964-49171983 Msa0815550:intron 30.0%
GCTGACATATTTATTAGTAG+AGG - chr5_3:49172076-49172095 Msa0815550:intron 30.0%
TTACAAATAGATTAAGTCCG+AGG + chr5_3:49172103-49172122 None:intergenic 30.0%
TCTAGAAAGTTGTATACTCT+AGG + chr5_3:49172238-49172257 None:intergenic 30.0%
TATTTGCATGACAGGTAATT+TGG - chr5_3:49172406-49172425 Msa0815550:intron 30.0%
! GTAATTTGGAATCCTATAGA+CGG - chr5_3:49172420-49172439 Msa0815550:intron 30.0%
! TAATTTGGAATCCTATAGAC+GGG - chr5_3:49172421-49172440 Msa0815550:intron 30.0%
ACTAAATCTGAACAAAGTAC+CGG - chr5_3:49172509-49172528 Msa0815550:intron 30.0%
GACAAAACAGCAATCTAAAT+TGG + chr5_3:49172594-49172613 None:intergenic 30.0%
CTTCCATTTCTATGATCAAT+TGG - chr5_3:49172681-49172700 Msa0815550:intron 30.0%
AGGAAACATGAGAAAAGAAA+AGG - chr5_3:49172725-49172744 Msa0815550:intron 30.0%
! GTCAATAAGTTTTCCTAGAT+TGG - chr5_3:49172763-49172782 Msa0815550:intron 30.0%
TATTGGCATTTCATAGAATG+TGG - chr5_3:49172880-49172899 Msa0815550:intron 30.0%
ATTGGCATTTCATAGAATGT+GGG - chr5_3:49172881-49172900 Msa0815550:intron 30.0%
! TGTCAAAAGTACACTCAAAA+TGG + chr5_3:49172957-49172976 None:intergenic 30.0%
! TTTGAGTGTACTTTTGACAT+TGG - chr5_3:49172958-49172977 Msa0815550:intron 30.0%
GTTTAATATGGATGGAGAAA+AGG + chr5_3:49173009-49173028 None:intergenic 30.0%
AGTCCACAAATATAAACGAA+CGG + chr5_3:49173073-49173092 None:intergenic 30.0%
CATGACTTACAATCTTCATT+GGG + chr5_3:49173195-49173214 None:intergenic 30.0%
ACATGACTTACAATCTTCAT+TGG + chr5_3:49173196-49173215 None:intergenic 30.0%
TTTCCATGTTTGTCTTATGT+TGG - chr5_3:49173275-49173294 Msa0815550:intron 30.0%
!!! TTTTTTGTTGTTTTATGGCG+AGG - chr5_3:49173444-49173463 Msa0815550:intron 30.0%
!!! TTTTTGTTGTTTTATGGCGA+GGG - chr5_3:49173445-49173464 Msa0815550:intron 30.0%
! CAAGAAAAAGGTATATCCAA+GGG + chr5_3:49173770-49173789 None:intergenic 30.0%
! CTTGGATATACCTTTTTCTT+GGG - chr5_3:49173769-49173788 Msa0815550:intron 30.0%
! TTGAAGTTGATCAAGAACTG+CGG - chr5_3:49167607-49167626 Msa0815550:three_prime_UTR 35.0%
GTAAAAATCGGAACTTGAAG+TGG + chr5_3:49167840-49167859 None:intergenic 35.0%
! GTTCCGATTTTTACATCATG+GGG - chr5_3:49167846-49167865 Msa0815550:CDS 35.0%
!!! TTTTTTAGGTTTTGGCTCCT+AGG - chr5_3:49168437-49168456 Msa0815550:intron 35.0%
!! ACCATTTGGTTTGAGTACAA+AGG - chr5_3:49168532-49168551 Msa0815550:CDS 35.0%
TCCTTTGTACTCAAACCAAA+TGG + chr5_3:49168536-49168555 None:intergenic 35.0%
CACAGAAAGTAAACTCTACA+AGG + chr5_3:49168900-49168919 None:intergenic 35.0%
!! ATGTTATTATGGCGGATTTC+TGG + chr5_3:49169007-49169026 None:intergenic 35.0%
ATTGAAGAAAACCAAGGACA+AGG + chr5_3:49169413-49169432 None:intergenic 35.0%
AAACCAATATTTCAGTCCTC+GGG + chr5_3:49169819-49169838 None:intergenic 35.0%
TGTTTAATTGGGGCAGATAT+TGG - chr5_3:49169860-49169879 Msa0815550:intron 35.0%
GTTTAATTGGGGCAGATATT+GGG - chr5_3:49169861-49169880 Msa0815550:intron 35.0%
!! TGCTTTGAAAACAAGTGAAG+GGG + chr5_3:49169962-49169981 None:intergenic 35.0%
GTTGAAAAACATTGACAAGG+TGG + chr5_3:49170001-49170020 None:intergenic 35.0%
TTGTACAGGTATATACCAAC+TGG - chr5_3:49170141-49170160 Msa0815550:intron 35.0%
AGATCAAAAAGAACTCCAGT+TGG + chr5_3:49170159-49170178 None:intergenic 35.0%
! TTTTGTGTATGGAACCAGAA+AGG - chr5_3:49170178-49170197 Msa0815550:intron 35.0%
AGTCTTCAATGAAATTTGGG+TGG - chr5_3:49170239-49170258 Msa0815550:intron 35.0%
CACGGAAGCAATAAATTACT+TGG + chr5_3:49170531-49170550 None:intergenic 35.0%
AATTTATTGCTTCCGTGTGA+CGG - chr5_3:49170534-49170553 Msa0815550:CDS 35.0%
CTTTATCAACTCACTGAAAG+AGG - chr5_3:49170578-49170597 Msa0815550:CDS 35.0%
CATGATAAAACTATCTGCGT+TGG - chr5_3:49170673-49170692 Msa0815550:intron 35.0%
ATGGTCGTTTGTATAGTATG+AGG - chr5_3:49170716-49170735 Msa0815550:intron 35.0%
GGGATATCATTAGTGAAACT+TGG - chr5_3:49170785-49170804 Msa0815550:intron 35.0%
!! TTATTGAGTTGAGGTAATGG+TGG - chr5_3:49170818-49170837 Msa0815550:intron 35.0%
CATGTAAGAAAACCCCATTT+AGG - chr5_3:49171182-49171201 Msa0815550:intron 35.0%
!! AATTGGGTTGAACATAGAGT+TGG - chr5_3:49171238-49171257 Msa0815550:intron 35.0%
!! ATTGGGTTGAACATAGAGTT+GGG - chr5_3:49171239-49171258 Msa0815550:intron 35.0%
TGTTAGCGACTGTTAATTCA+CGG - chr5_3:49171276-49171295 Msa0815550:intron 35.0%
AGATTATGAGGAGTAAGAAG+TGG - chr5_3:49171380-49171399 Msa0815550:intron 35.0%
! TGATGATTAGAATTCGGGTT+AGG - chr5_3:49171510-49171529 Msa0815550:intron 35.0%
AGCTTAATAAGGTACAGCTT+TGG + chr5_3:49171547-49171566 None:intergenic 35.0%
AAGCAAATTGAACTTCACCT+TGG + chr5_3:49171594-49171613 None:intergenic 35.0%
! TAGTCACTTTGCAAGAGATA+AGG - chr5_3:49172003-49172022 Msa0815550:intron 35.0%
!! TGTTGGTTCAAGTGATCAAT+TGG - chr5_3:49172054-49172073 Msa0815550:intron 35.0%
TATTTATTAGTAGAGGGCCT+CGG - chr5_3:49172083-49172102 Msa0815550:intron 35.0%
TCTACGAAGTTGTACAACTT+AGG + chr5_3:49172200-49172219 None:intergenic 35.0%
TGTCATGCAAATAGTAATGG+CGG + chr5_3:49172399-49172418 None:intergenic 35.0%
ACCTGTCATGCAAATAGTAA+TGG + chr5_3:49172402-49172421 None:intergenic 35.0%
! CTAAATCTGAACAAAGTACC+GGG - chr5_3:49172510-49172529 Msa0815550:intron 35.0%
!! TAAATCTGAACAAAGTACCG+GGG - chr5_3:49172511-49172530 Msa0815550:intron 35.0%
TCAAGTTCATATTGCTCACT+TGG + chr5_3:49172563-49172582 None:intergenic 35.0%
AAGTTAGGGAAAACGTGAAA+CGG + chr5_3:49172639-49172658 None:intergenic 35.0%
! TCACGTTTTCCCTAACTTTT+TGG - chr5_3:49172641-49172660 Msa0815550:intron 35.0%
GTCAAAGAGCCAAAAAGTTA+GGG + chr5_3:49172653-49172672 None:intergenic 35.0%
TGTCAAAGAGCCAAAAAGTT+AGG + chr5_3:49172654-49172673 None:intergenic 35.0%
CAGCCAATTGATCATAGAAA+TGG + chr5_3:49172687-49172706 None:intergenic 35.0%
CATGAGAAAAGAAAAGGCAA+AGG - chr5_3:49172731-49172750 Msa0815550:intron 35.0%
! CCTGTAGTTTTCGACAATAT+TGG + chr5_3:49172828-49172847 None:intergenic 35.0%
CCAATATTGTCGAAAACTAC+AGG - chr5_3:49172825-49172844 Msa0815550:intron 35.0%
TATTGTCGAAAACTACAGGT+TGG - chr5_3:49172829-49172848 Msa0815550:intron 35.0%
!!! AACTACAGGTTGGTGTTTTA+AGG - chr5_3:49172839-49172858 Msa0815550:intron 35.0%
! TTGACATTGGTGACTTGAAT+TGG - chr5_3:49172971-49172990 Msa0815550:intron 35.0%
! GACTTGAATTGGTTTCATGT+AGG - chr5_3:49172982-49173001 Msa0815550:intron 35.0%
CATCTTCTATCTTGTTAGGT+AGG - chr5_3:49173043-49173062 Msa0815550:intron 35.0%
TTCCCGTTCGTTTATATTTG+TGG - chr5_3:49173067-49173086 Msa0815550:intron 35.0%
GTCCACAAATATAAACGAAC+GGG + chr5_3:49173072-49173091 None:intergenic 35.0%
! ATGCTCCAAACATTGATAAC+TGG - chr5_3:49173121-49173140 Msa0815550:CDS 35.0%
! TGCTCCAAACATTGATAACT+GGG - chr5_3:49173122-49173141 Msa0815550:CDS 35.0%
TTGTCCCAGTTATCAATGTT+TGG + chr5_3:49173129-49173148 None:intergenic 35.0%
ATCTCATTGGAAATCTCAAC+AGG + chr5_3:49173171-49173190 None:intergenic 35.0%
ATCTTCATTGGGAATCTCAT+TGG + chr5_3:49173184-49173203 None:intergenic 35.0%
TCAGTTTAAAAGCTCTATGG+AGG + chr5_3:49173230-49173249 None:intergenic 35.0%
GAACCAACATAAGACAAACA+TGG + chr5_3:49173281-49173300 None:intergenic 35.0%
AATGTTACACATAGCTGAGA+CGG + chr5_3:49173374-49173393 None:intergenic 35.0%
!!! GAATTTTCTGGAAAGTACTC+GGG + chr5_3:49173611-49173630 None:intergenic 35.0%
!!! GGAATTTTCTGGAAAGTACT+CGG + chr5_3:49173612-49173631 None:intergenic 35.0%
GCAAACATAAATCAAAGCAC+AGG - chr5_3:49173650-49173669 Msa0815550:intron 35.0%
TTGATTTCTGCAATCTCAAG+CGG + chr5_3:49173719-49173738 None:intergenic 35.0%
! CCAAGAAAAAGGTATATCCA+AGG + chr5_3:49173771-49173790 None:intergenic 35.0%
! CCTTGGATATACCTTTTTCT+TGG - chr5_3:49173768-49173787 Msa0815550:intron 35.0%
TTGTGAATCACCCAAGAAAA+AGG + chr5_3:49173782-49173801 None:intergenic 35.0%
CACATGTGAAGGAAATAATC+AGG + chr5_3:49173815-49173834 None:intergenic 35.0%
ACCAGAACGTAGAAGAAGAA+GGG - chr5_3:49167573-49167592 Msa0815550:three_prime_UTR 40.0%
GATCTGGAAGAGATGAATGA+AGG - chr5_3:49167643-49167662 Msa0815550:three_prime_UTR 40.0%
ATGAAGGACAGGAATACGTA+TGG - chr5_3:49167659-49167678 Msa0815550:three_prime_UTR 40.0%
GTTGTCTCATGGTTAAGTGA+TGG - chr5_3:49168146-49168165 Msa0815550:intron 40.0%
!! GAATACGGTGTTGCTTTAAC+TGG - chr5_3:49168340-49168359 Msa0815550:intron 40.0%
ACTACACAATACCACTTGAG+AGG + chr5_3:49168562-49168581 None:intergenic 40.0%
! GTTGTTGGAATTCTAAGGGT+TGG - chr5_3:49168619-49168638 Msa0815550:intron 40.0%
GATTAACTGTAAAACCAGGG+TGG - chr5_3:49168862-49168881 Msa0815550:intron 40.0%
GATATCAATGTTGTCGATGG+TGG - chr5_3:49168967-49168986 Msa0815550:intron 40.0%
GCAATGGCATGTTATTATGG+CGG + chr5_3:49169015-49169034 None:intergenic 40.0%
GCCATAATAACATGCCATTG+CGG - chr5_3:49169014-49169033 Msa0815550:intron 40.0%
!! GTGCGCATCACTTTTCAAAT+TGG - chr5_3:49169054-49169073 Msa0815550:intron 40.0%
TTCCCAACCCTTACAATTTG+AGG - chr5_3:49169209-49169228 Msa0815550:intron 40.0%
TCCCAACCCTTACAATTTGA+GGG - chr5_3:49169210-49169229 Msa0815550:intron 40.0%
TTGTTATGCTACCTTGTCCT+TGG - chr5_3:49169399-49169418 Msa0815550:intron 40.0%
GTTTCACGCTTATCTTGATG+CGG - chr5_3:49169640-49169659 Msa0815550:intron 40.0%
TAACCCGAGGACTGAAATAT+TGG - chr5_3:49169813-49169832 Msa0815550:intron 40.0%
AAGTGAAGGGGGAGATTAAA+GGG + chr5_3:49169950-49169969 None:intergenic 40.0%
!! GCTTTGAAAACAAGTGAAGG+GGG + chr5_3:49169961-49169980 None:intergenic 40.0%
GTATATACCTGTACAAGCCA+TGG + chr5_3:49170137-49170156 None:intergenic 40.0%
ATTGAAATCTGCTTGGGGAA+GGG - chr5_3:49170328-49170347 Msa0815550:intron 40.0%
TCTGTGTAGGTACACTTTAG+AGG - chr5_3:49170501-49170520 Msa0815550:intron 40.0%
!! GGCTTATTGAGTTGAGGTAA+TGG - chr5_3:49170815-49170834 Msa0815550:intron 40.0%
GAACATGTCTCAAACTGATC+AGG - chr5_3:49171068-49171087 Msa0815550:CDS 40.0%
GTTAGCGACTGTTAATTCAC+GGG - chr5_3:49171277-49171296 Msa0815550:intron 40.0%
TCTCTAGCTGAATTGGTTAG+AGG - chr5_3:49171301-49171320 Msa0815550:intron 40.0%
CTCTAGCTGAATTGGTTAGA+GGG - chr5_3:49171302-49171321 Msa0815550:intron 40.0%
TCTTGCAAAGTGACTACCAA+TGG + chr5_3:49171999-49172018 None:intergenic 40.0%
! GCAAGAGATAAGGTTGTTTC+AGG - chr5_3:49172013-49172032 Msa0815550:intron 40.0%
!! AGTTTGTTGCTCTCTTCTCA+TGG - chr5_3:49172369-49172388 Msa0815550:intron 40.0%
GCCATTACTATTTGCATGAC+AGG - chr5_3:49172398-49172417 Msa0815550:intron 40.0%
TAGTGTGAGAGAACCAATCT+AGG + chr5_3:49172779-49172798 None:intergenic 40.0%
!!! ACAGGTTGGTGTTTTAAGGT+TGG - chr5_3:49172843-49172862 Msa0815550:intron 40.0%
CTCAAAATGGAGTTCTATGC+AGG + chr5_3:49172944-49172963 None:intergenic 40.0%
TGACAAGAGTTGAAGAAGAG+TGG + chr5_3:49173502-49173521 None:intergenic 40.0%
AAATCAAAGCACAGGAGAAG+AGG - chr5_3:49173658-49173677 Msa0815550:intron 40.0%
AATCAAAGCACAGGAGAAGA+GGG - chr5_3:49173659-49173678 Msa0815550:intron 40.0%
GGGAGAAAATTCATCTGATC+CGG - chr5_3:49173679-49173698 Msa0815550:intron 40.0%
TGATTTCTGCAATCTCAAGC+GGG + chr5_3:49173718-49173737 None:intergenic 40.0%
TCAAGCAAACACACATGTGA+AGG + chr5_3:49173826-49173845 None:intergenic 40.0%
GAAAAACGGTTCCCTTGATT+GGG + chr5_3:49174054-49174073 None:intergenic 40.0%
ACCCTTCTTCTTCTACGTTC+TGG + chr5_3:49167577-49167596 None:intergenic 45.0%
GGAAGAGATGAATGAAGGAC+AGG - chr5_3:49167648-49167667 Msa0815550:three_prime_UTR 45.0%
TGTTGTGTTCATACGAGAGC+GGG + chr5_3:49167751-49167770 None:intergenic 45.0%
GTGTTGTGTTCATACGAGAG+CGG + chr5_3:49167752-49167771 None:intergenic 45.0%
TTGGAAACTGATCATGGGAC+CGG + chr5_3:49168216-49168235 None:intergenic 45.0%
!!! TTAGGTTTTGGCTCCTAGGA+TGG - chr5_3:49168441-49168460 Msa0815550:intron 45.0%
!!! TAGGTTTTGGCTCCTAGGAT+GGG - chr5_3:49168442-49168461 Msa0815550:CDS 45.0%
! GGAAGTGTAGAGCAGAAATG+AGG + chr5_3:49168499-49168518 None:intergenic 45.0%
AACCAAATGGTGTCTACTCC+AGG + chr5_3:49168523-49168542 None:intergenic 45.0%
ACAAAGGATTGCCTCTCAAG+TGG - chr5_3:49168548-49168567 Msa0815550:CDS 45.0%
TAGCATGGTTTCTTCCACGT+CGG + chr5_3:49168937-49168956 None:intergenic 45.0%
!! CGATGGTGGAATATAGCGAA+AGG - chr5_3:49168981-49169000 Msa0815550:intron 45.0%
GCCGCAATGGCATGTTATTA+TGG + chr5_3:49169018-49169037 None:intergenic 45.0%
TTGAAAAGTGATGCGCACCA+TGG + chr5_3:49169052-49169071 None:intergenic 45.0%
! GTGTTGTTAAATGGCAGCCA+TGG + chr5_3:49169129-49169148 None:intergenic 45.0%
GCCCTCAAATTGTAAGGGTT+GGG + chr5_3:49169214-49169233 None:intergenic 45.0%
AGCCCTCAAATTGTAAGGGT+TGG + chr5_3:49169215-49169234 None:intergenic 45.0%
AGGCAGCCCTCAAATTGTAA+GGG + chr5_3:49169219-49169238 None:intergenic 45.0%
AAGGCAGCCCTCAAATTGTA+AGG + chr5_3:49169220-49169239 None:intergenic 45.0%
GGACTAAATTGCTTAACCCG+AGG - chr5_3:49169800-49169819 Msa0815550:intron 45.0%
CAAGTGAAGGGGGAGATTAA+AGG + chr5_3:49169951-49169970 None:intergenic 45.0%
!! TTTTTGGCCATGGCTTGTAC+AGG - chr5_3:49170127-49170146 Msa0815550:intron 45.0%
GTTAAATTCCACGGCCTTTC+TGG + chr5_3:49170195-49170214 None:intergenic 45.0%
GATTGAAATCTGCTTGGGGA+AGG - chr5_3:49170327-49170346 Msa0815550:intron 45.0%
TTGAAATCTGCTTGGGGAAG+GGG - chr5_3:49170329-49170348 Msa0815550:intron 45.0%
AATCTGCGTACTCTCTGTGT+AGG - chr5_3:49170488-49170507 Msa0815550:intron 45.0%
GATGTCAATGGACAGGGTTA+TGG - chr5_3:49170755-49170774 Msa0815550:intron 45.0%
!! GACAGGGTTATGGTTCTAGA+GGG - chr5_3:49170765-49170784 Msa0815550:intron 45.0%
CATGTCTCAAACTGATCAGG+TGG - chr5_3:49171071-49171090 Msa0815550:CDS 45.0%
!!! CTCTGGGGCTCTGTTTTAAA+TGG - chr5_3:49171096-49171115 Msa0815550:CDS 45.0%
AAAACCCCATTTAGGTGCGT+AGG - chr5_3:49171190-49171209 Msa0815550:intron 45.0%
TCATCCTACGCACCTAAATG+GGG + chr5_3:49171197-49171216 None:intergenic 45.0%
CTCATCCTACGCACCTAAAT+GGG + chr5_3:49171198-49171217 None:intergenic 45.0%
AGCTGAATTGGTTAGAGGGA+AGG - chr5_3:49171306-49171325 Msa0815550:intron 45.0%
GCTGAATTGGTTAGAGGGAA+GGG - chr5_3:49171307-49171326 Msa0815550:intron 45.0%
AATTGGTTAGAGGGAAGGGA+GGG - chr5_3:49171311-49171330 Msa0815550:intron 45.0%
AAGGAAGGGAGACTATTTCC+AGG - chr5_3:49171350-49171369 Msa0815550:intron 45.0%
AGGAAGGGAGACTATTTCCA+GGG - chr5_3:49171351-49171370 Msa0815550:intron 45.0%
GAAGTGGAGTTCTCTTGTGT+TGG - chr5_3:49171396-49171415 Msa0815550:intron 45.0%
! AGTTTGTTTGTGGATCGCCA+AGG - chr5_3:49171574-49171593 Msa0815550:intron 45.0%
ACACAGGCTATATCTGCCAT+TGG - chr5_3:49171980-49171999 Msa0815550:intron 45.0%
CTTAGATGACACCCGTCTAT+AGG + chr5_3:49172435-49172454 None:intergenic 45.0%
ATCAAGTGTGTACGCGTTCA+AGG - chr5_3:49173734-49173753 Msa0815550:intron 45.0%
TCAAGTGTGTACGCGTTCAA+GGG - chr5_3:49173735-49173754 Msa0815550:intron 45.0%
TTATCCCTACTGCACAGCAT+TGG + chr5_3:49173861-49173880 None:intergenic 45.0%
!!! TTAATTCTAAAAAAATTAAA+GGG + chr5_3:49170874-49170893 None:intergenic 5.0%
GGACAGGAATACGTATGGCA+AGG - chr5_3:49167664-49167683 Msa0815550:three_prime_UTR 50.0%
!!! AGGTTTTGGCTCCTAGGATG+GGG - chr5_3:49168443-49168462 Msa0815550:CDS 50.0%
AAAGGCAAGTACCCCATCCT+AGG + chr5_3:49168457-49168476 None:intergenic 50.0%
TTCTGCTCTACACTTCCTCC+TGG - chr5_3:49168502-49168521 Msa0815550:CDS 50.0%
CAAATGGTGTCTACTCCAGG+AGG + chr5_3:49168520-49168539 None:intergenic 50.0%
CTCCTGGAGTAGACACCATT+TGG - chr5_3:49168518-49168537 Msa0815550:CDS 50.0%
TAACATGCCATTGCGGCCTA+TGG - chr5_3:49169021-49169040 Msa0815550:intron 50.0%
AAAAGTGATGCGCACCATGG+CGG + chr5_3:49169049-49169068 None:intergenic 50.0%
TCCTCCATGCTATTCTGCCA+TGG - chr5_3:49169098-49169117 Msa0815550:CDS 50.0%
ACCATGGCAGAATAGCATGG+AGG + chr5_3:49169102-49169121 None:intergenic 50.0%
GCAACCATGGCAGAATAGCA+TGG + chr5_3:49169105-49169124 None:intergenic 50.0%
ATTCTGCCATGGTTGCACCA+TGG - chr5_3:49169109-49169128 Msa0815550:CDS 50.0%
TGAAATCTGCTTGGGGAAGG+GGG - chr5_3:49170330-49170349 Msa0815550:intron 50.0%
ACACTGTCTTCACCGTCACA+CGG + chr5_3:49170549-49170568 None:intergenic 50.0%
ACGGTGAAGACAGTGTGAAG+TGG - chr5_3:49170553-49170572 Msa0815550:CDS 50.0%
!! GGACAGGGTTATGGTTCTAG+AGG - chr5_3:49170764-49170783 Msa0815550:intron 50.0%
AAACTGATCAGGTGGAGCTC+TGG - chr5_3:49171079-49171098 Msa0815550:CDS 50.0%
AACTGATCAGGTGGAGCTCT+GGG - chr5_3:49171080-49171099 Msa0815550:CDS 50.0%
CCTCATCCTACGCACCTAAA+TGG + chr5_3:49171199-49171218 None:intergenic 50.0%
CCATTTAGGTGCGTAGGATG+AGG - chr5_3:49171196-49171215 Msa0815550:intron 50.0%
CACGGGATCTCTAGCTGAAT+TGG - chr5_3:49171294-49171313 Msa0815550:intron 50.0%
GAATTGGTTAGAGGGAAGGG+AGG - chr5_3:49171310-49171329 Msa0815550:intron 50.0%
GGGAGACTATTTCCAGGGTA+TGG - chr5_3:49171356-49171375 Msa0815550:intron 50.0%
CCTCATAATCTGCCATACCC+TGG + chr5_3:49171371-49171390 None:intergenic 50.0%
CCAGGGTATGGCAGATTATG+AGG - chr5_3:49171368-49171387 Msa0815550:intron 50.0%
GACATGTATGCTCCAGCTTG+AGG - chr5_3:49172139-49172158 Msa0815550:intron 50.0%
CCAACAAACACTCCTCAAGC+TGG + chr5_3:49172154-49172173 None:intergenic 50.0%
!! CCAGCTTGAGGAGTGTTTGT+TGG - chr5_3:49172151-49172170 Msa0815550:intron 50.0%
TTTCTGCAATCTCAAGCGGG+TGG + chr5_3:49173715-49173734 None:intergenic 50.0%
TCAAGGGATAGATCTGCCCT+TGG - chr5_3:49173751-49173770 Msa0815550:intron 50.0%
AGAAGCCAATGCTGTGCAGT+AGG - chr5_3:49173853-49173872 Msa0815550:intron 50.0%
GAAGCCAATGCTGTGCAGTA+GGG - chr5_3:49173854-49173873 Msa0815550:intron 50.0%
CGGAGAGAGAGAGAGAGATC+TGG - chr5_3:49167627-49167646 Msa0815550:three_prime_UTR 55.0%
TGTGTTCATACGAGAGCGGG+TGG + chr5_3:49167748-49167767 None:intergenic 55.0%
! GGCATAGCTTTTGTCCACCC+TGG + chr5_3:49168879-49168898 None:intergenic 55.0%
TGGTTTCTTCCACGTCGGTG+TGG + chr5_3:49168932-49168951 None:intergenic 55.0%
!! GTAGAGATAGGGCACTGTCC+TGG - chr5_3:49169267-49169286 Msa0815550:intron 55.0%
CTGATCGACTGATCCTAGCC+AGG + chr5_3:49169288-49169307 None:intergenic 55.0%
GTATGGAACCAGAAAGGCCG+TGG - chr5_3:49170184-49170203 Msa0815550:intron 55.0%
ACTGATCAGGTGGAGCTCTG+GGG - chr5_3:49171081-49171100 Msa0815550:CDS 55.0%
GTTCATACGAGAGCGGGTGG+AGG + chr5_3:49167745-49167764 None:intergenic 60.0%
TGTTCAGCTCCACACCGACG+TGG - chr5_3:49168920-49168939 Msa0815550:intron 60.0%
TGGCAGCCATGGTGCAACCA+TGG + chr5_3:49169118-49169137 None:intergenic 60.0%
!! GATAGGGCACTGTCCTGGCT+AGG - chr5_3:49169272-49169291 Msa0815550:intron 60.0%
TCCAGCAGCTTCAGCATCCC+CGG + chr5_3:49172531-49172550 None:intergenic 60.0%
GGGTGGAGGAGGAGGAAGAG+TGG + chr5_3:49167731-49167750 None:intergenic 65.0%
CATACGAGAGCGGGTGGAGG+AGG + chr5_3:49167742-49167761 None:intergenic 65.0%
ACCGGGGATGCTGAAGCTGC+TGG - chr5_3:49172527-49172546 Msa0815550:intron 65.0%
AGCGGGTGGCAAGATGACGC+CGG + chr5_3:49173701-49173720 None:intergenic 65.0%
ACGAGAGCGGGTGGAGGAGG+AGG + chr5_3:49167739-49167758 None:intergenic 70.0%
GGCGGCGCCATAGGCCGCAA+TGG + chr5_3:49169031-49169050 None:intergenic 75.0%
TGCGGCCTATGGCGCCGCCA+TGG - chr5_3:49169032-49169051 Msa0815550:intron 75.0%
GCGCACCATGGCGGCGCCAT+AGG + chr5_3:49169040-49169059 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 49167573 49174073 49167573 ID=Msa0815550;Name=Msa0815550
chr5_3 mRNA 49167573 49174073 49167573 ID=Msa0815550-mRNA-1;Parent=Msa0815550;Name=Msa0815550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=82|1|1|1|1|1|8|199|355
chr5_3 exon 49167573 49168079 49167573 ID=Msa0815550-mRNA-1:exon:14769;Parent=Msa0815550-mRNA-1
chr5_3 exon 49168442 49168585 49168442 ID=Msa0815550-mRNA-1:exon:14768;Parent=Msa0815550-mRNA-1
chr5_3 exon 49169083 49169226 49169083 ID=Msa0815550-mRNA-1:exon:14767;Parent=Msa0815550-mRNA-1
chr5_3 exon 49170529 49170616 49170529 ID=Msa0815550-mRNA-1:exon:14766;Parent=Msa0815550-mRNA-1
chr5_3 exon 49171047 49171136 49171047 ID=Msa0815550-mRNA-1:exon:14765;Parent=Msa0815550-mRNA-1
chr5_3 exon 49171431 49171497 49171431 ID=Msa0815550-mRNA-1:exon:14764;Parent=Msa0815550-mRNA-1
chr5_3 exon 49173077 49173201 49173077 ID=Msa0815550-mRNA-1:exon:14763;Parent=Msa0815550-mRNA-1
chr5_3 exon 49173890 49174073 49173890 ID=Msa0815550-mRNA-1:exon:14762;Parent=Msa0815550-mRNA-1
chr5_3 five_prime_UTR 49173992 49174073 49173992 ID=Msa0815550-mRNA-1:five_prime_utr;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49173890 49173991 49173890 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49173077 49173201 49173077 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49171431 49171497 49171431 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49171047 49171136 49171047 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49170529 49170616 49170529 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49169083 49169226 49169083 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49168442 49168585 49168442 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 CDS 49167772 49168079 49167772 ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1
chr5_3 three_prime_UTR 49167573 49167771 49167573 ID=Msa0815550-mRNA-1:three_prime_utr;Parent=Msa0815550-mRNA-1
Gene Sequence

>Msa0815550

ATGAATGAAGGACAGGAATACGTATGGCAAGGTTCAATTCCTCTTCAAATTCATCTTCATGAATCTGAAGTCACCACTCTTCCTCCTCCTCCACCCGCTCTCGTTTTGGCTCCTAGGATGGGGTACTTGCCTTTGTTGATTTCTCTGTTGAAACCTCATTTCTGCTCTACACTTCCTCCTGGAGTAGACACCATTTGGTTTGAGTACAAAGGATTGCCTCTCAAGTGGTATATACCAACTGGAGTTCTTTTTGATCTTTTGTGTATGGAACCAGAAAGGCCGTGGAATTTAACAGTACACTTTAGAGGATACCCAAGTAATTTATTGCTTCCGTGTGACGGTGAAGACAGTGTGAAGTGGAGCTTTATCAACTCACTGAAAGAGGCTGCATATGTAATAAATGGAAATTGCAAGAATGTCATGAACATGTCTCAAACTGATCAGGTGGAGCTCTGGGGCTCTGTTTTAAATGGTAATTTGGAATCCTATAGACGGGTGTCATCTAAGCTTAAGCTTGAAACTTATGAAGATGACTATGCAGAAAATATCGATTCACTCTCGACTAAATCTGAACAAAGTACCGGGGATGCTGAAGCTGCTGGACAAGTGAAGCCAAGTAGGATTCCCGTTCGTTTATATTTGTGGACTGTTAACAACGATTTTGATGATTTTGAAGATGCTCCAAACATTGATAACTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTTCCAATGAGATTCCCAATGAAGATTATAAGTACTTTAGCGTAAACGATGCAGTGAAAAGACTTCTGCCCGAGTACTTTCCAGAAAATTCCTTTGTTAATGAATTAGATGCAAACATAAATCAAAGCACAGGAGAAGAGGGAGAAAATTCATCTGATCCGGCGTCATCTTGCCACCCGCTTGAGATTGCAGAAATCAAGTGTGTACGCGTTCAAGGGATAGATCTGCCCTTGGATATACCTTTTTCTTGGGTGATTCACAACTTAATGAATCCTGATTATTTCCTTCACATGTGTGTTTGCTTGAAAGTTTCAGAAGCCAATGCTGTGCAGTAG

Protein sequence

>Msa0815550

MNEGQEYVWQGSIPLQIHLHESEVTTLPPPPPALVLAPRMGYLPLLISLLKPHFCSTLPPGVDTIWFEYKGLPLKWYIPTGVLFDLLCMEPERPWNLTVHFRGYPSNLLLPCDGEDSVKWSFINSLKEAAYVINGNCKNVMNMSQTDQVELWGSVLNGNLESYRRVSSKLKLETYEDDYAENIDSLSTKSEQSTGDAEAAGQVKPSRIPVRLYLWTVNNDFDDFEDAPNIDNWDKVSYINRPVEISNEIPNEDYKYFSVNDAVKRLLPEYFPENSFVNELDANINQSTGEEGENSSDPASSCHPLEIAEIKCVRVQGIDLPLDIPFSWVIHNLMNPDYFLHMCVCLKVSEANAVQ*