Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0815550 | XP_003616172.2 | 89.891 | 366 | 21 | 4 | 1 | 355 | 1 | 361 | 0.0 | 623 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0815550 | sp|Q9FFI2|ATG5_ARATH | 57.880 | 349 | 132 | 3 | 2 | 350 | 3 | 336 | 3.14e-151 | 432 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0815550 | G7KFU3 | 89.891 | 366 | 21 | 4 | 1 | 355 | 1 | 361 | 0.0 | 623 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0815550 | Msa0818060 | 0.803130 | 4.037869e-49 | -8.615850e-47 |
Msa0815550 | Msa0855750 | 0.803105 | 4.086460e-49 | -8.615850e-47 |
Msa0815550 | Msa1204530 | 0.804380 | 2.220725e-49 | -8.615850e-47 |
Msa0815550 | Msa1346840 | 0.801228 | 9.939826e-49 | -8.615850e-47 |
Msa0257490 | Msa0815550 | 0.809277 | 2.048401e-50 | -8.615850e-47 |
Msa0296790 | Msa0815550 | 0.812547 | 4.012606e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0815550 | MtrunA17_Chr5g0433811 | 89.891 | 366 | 21 | 4 | 1 | 355 | 1 | 361 | 0.0 | 623 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0815550 | AT5G17290.1 | 57.880 | 349 | 132 | 3 | 2 | 350 | 3 | 336 | 3.19e-152 | 432 |
Find 84 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTAAATTCCACGGCCTTTC+TGG | 0.094375 | 5_3:+49171432 | None:intergenic |
TATTTGCATGACAGGTAATT+TGG | 0.166892 | 5_3:-49169218 | Msa0815550:intron |
TAGGCTGCATATGTAATAAA+TGG | 0.292955 | 5_3:-49170597 | Msa0815550:CDS |
ATGCTCCAAACATTGATAAC+TGG | 0.315581 | 5_3:-49168503 | Msa0815550:CDS |
TGTAAAATAGAAAACGAATT+AGG | 0.323570 | 5_3:+49167641 | None:intergenic |
ACATGACTTACAATCTTCAT+TGG | 0.330038 | 5_3:+49168431 | None:intergenic |
TTGTGAATCACCCAAGAAAA+AGG | 0.333980 | 5_3:+49167845 | None:intergenic |
CACGGAAGCAATAAATTACT+TGG | 0.340365 | 5_3:+49171096 | None:intergenic |
CTCCTGGAGTAGACACCATT+TGG | 0.349281 | 5_3:-49173106 | Msa0815550:CDS |
ACCCTTCTTCTTCTACGTTC+TGG | 0.353285 | 5_3:+49174050 | None:intergenic |
TTCCCGTTCGTTTATATTTG+TGG | 0.360359 | 5_3:-49168557 | Msa0815550:CDS |
AAACTGATCAGGTGGAGCTC+TGG | 0.371178 | 5_3:-49170545 | Msa0815550:CDS |
AACTGATCAGGTGGAGCTCT+GGG | 0.373153 | 5_3:-49170544 | Msa0815550:CDS |
AAAGTGTAATATATGTTAAC+TGG | 0.385646 | 5_3:-49167614 | Msa0815550:three_prime_UTR |
TTGTCCCAGTTATCAATGTT+TGG | 0.388360 | 5_3:+49168498 | None:intergenic |
ATCTTCATTGGGAATCTCAT+TGG | 0.393444 | 5_3:+49168443 | None:intergenic |
CTTAGATGACACCCGTCTAT+AGG | 0.394576 | 5_3:+49169192 | None:intergenic |
ATCAAGTGTGTACGCGTTCA+AGG | 0.420354 | 5_3:-49167890 | Msa0815550:CDS |
TTCTGCTCTACACTTCCTCC+TGG | 0.426993 | 5_3:-49173122 | Msa0815550:CDS |
ACGAGAGCGGGTGGAGGAGG+AGG | 0.438437 | 5_3:+49173888 | None:intergenic |
CACATGTGAAGGAAATAATC+AGG | 0.447656 | 5_3:+49167812 | None:intergenic |
GGGTGGAGGAGGAGGAAGAG+TGG | 0.448769 | 5_3:+49173896 | None:intergenic |
ATCTCATTGGAAATCTCAAC+AGG | 0.465730 | 5_3:+49168456 | None:intergenic |
GTCCACAAATATAAACGAAC+GGG | 0.466896 | 5_3:+49168555 | None:intergenic |
ACCGGGGATGCTGAAGCTGC+TGG | 0.471906 | 5_3:-49169097 | Msa0815550:CDS |
CATGACTTACAATCTTCATT+GGG | 0.477472 | 5_3:+49168432 | None:intergenic |
GGGAGAAAATTCATCTGATC+CGG | 0.477934 | 5_3:-49167945 | Msa0815550:CDS |
TCTGTGTAGGTACACTTTAG+AGG | 0.480922 | 5_3:-49171123 | Msa0815550:intron |
GAACATGTCTCAAACTGATC+AGG | 0.487136 | 5_3:-49170556 | Msa0815550:CDS |
GTTCTTACTGTTAAATTCCA+CGG | 0.494033 | 5_3:+49171423 | None:intergenic |
AAAGGCAAGTACCCCATCCT+AGG | 0.499221 | 5_3:+49173170 | None:intergenic |
TATATAATAGATGTACAGAA+TGG | 0.499633 | 5_3:-49167687 | Msa0815550:three_prime_UTR |
CATACGAGAGCGGGTGGAGG+AGG | 0.512710 | 5_3:+49173885 | None:intergenic |
AACCAAATGGTGTCTACTCC+AGG | 0.513115 | 5_3:+49173104 | None:intergenic |
TCCAGCAGCTTCAGCATCCC+CGG | 0.515498 | 5_3:+49169096 | None:intergenic |
TGCATCTAATTCATTAACAA+AGG | 0.517718 | 5_3:+49167994 | None:intergenic |
TTGTACAGGTATATACCAAC+TGG | 0.525553 | 5_3:-49171483 | Msa0815550:intron |
TCCTTTGTACTCAAACCAAA+TGG | 0.525608 | 5_3:+49173091 | None:intergenic |
CACCAGAACGTAGAAGAAGA+AGG | 0.528093 | 5_3:-49174052 | Msa0815550:five_prime_UTR |
GGAAGAGATGAATGAAGGAC+AGG | 0.528153 | 5_3:-49173976 | Msa0815550:exon |
AAATCAAAGCACAGGAGAAG+AGG | 0.530580 | 5_3:-49167966 | Msa0815550:CDS |
CTTTATCAACTCACTGAAAG+AGG | 0.532828 | 5_3:-49171046 | Msa0815550:intron |
TGATTTCTGCAATCTCAAGC+GGG | 0.539915 | 5_3:+49167909 | None:intergenic |
AGAAGCCAATGCTGTGCAGT+AGG | 0.540359 | 5_3:-49167771 | Msa0815550:exon |
TGCTCCAAACATTGATAACT+GGG | 0.544293 | 5_3:-49168502 | Msa0815550:CDS |
AATTTATTGCTTCCGTGTGA+CGG | 0.548361 | 5_3:-49171090 | Msa0815550:CDS |
TTATCCCTACTGCACAGCAT+TGG | 0.549021 | 5_3:+49167766 | None:intergenic |
TCATGAAGATGAATTTGAAG+AGG | 0.549239 | 5_3:+49173930 | None:intergenic |
TTGATTTCTGCAATCTCAAG+CGG | 0.552377 | 5_3:+49167908 | None:intergenic |
AATCAAAGCACAGGAGAAGA+GGG | 0.552556 | 5_3:-49167965 | Msa0815550:CDS |
ACTAAATCTGAACAAAGTAC+CGG | 0.560549 | 5_3:-49169115 | Msa0815550:CDS |
GGAAGTGTAGAGCAGAAATG+AGG | 0.560587 | 5_3:+49173128 | None:intergenic |
GATCTGGAAGAGATGAATGA+AGG | 0.560736 | 5_3:-49173981 | Msa0815550:exon |
CTAAATCTGAACAAAGTACC+GGG | 0.567854 | 5_3:-49169114 | Msa0815550:CDS |
GTAATTTGGAATCCTATAGA+CGG | 0.573284 | 5_3:-49169204 | Msa0815550:CDS |
TAATTTGGAATCCTATAGAC+GGG | 0.573723 | 5_3:-49169203 | Msa0815550:CDS |
GTATGGAACCAGAAAGGCCG+TGG | 0.574803 | 5_3:-49171440 | Msa0815550:CDS |
TGTTGTGTTCATACGAGAGC+GGG | 0.576326 | 5_3:+49173876 | None:intergenic |
TCAAGTGTGTACGCGTTCAA+GGG | 0.580826 | 5_3:-49167889 | Msa0815550:CDS |
GAAGCCAATGCTGTGCAGTA+GGG | 0.581631 | 5_3:-49167770 | Msa0815550:exon |
GCAAACATAAATCAAAGCAC+AGG | 0.582940 | 5_3:-49167974 | Msa0815550:CDS |
TCAAGCAAACACACATGTGA+AGG | 0.583105 | 5_3:+49167801 | None:intergenic |
TCAAGGGATAGATCTGCCCT+TGG | 0.584571 | 5_3:-49167873 | Msa0815550:CDS |
ACCATTTGGTTTGAGTACAA+AGG | 0.584788 | 5_3:-49173092 | Msa0815550:CDS |
CATGTCTCAAACTGATCAGG+TGG | 0.589699 | 5_3:-49170553 | Msa0815550:CDS |
GTTCATACGAGAGCGGGTGG+AGG | 0.598729 | 5_3:+49173882 | None:intergenic |
AGTCCACAAATATAAACGAA+CGG | 0.600750 | 5_3:+49168554 | None:intergenic |
ATGAAGGACAGGAATACGTA+TGG | 0.609820 | 5_3:-49173965 | Msa0815550:CDS |
ACCAGAACGTAGAAGAAGAA+GGG | 0.620498 | 5_3:-49174051 | Msa0815550:five_prime_UTR |
ACACTGTCTTCACCGTCACA+CGG | 0.627485 | 5_3:+49171078 | None:intergenic |
AGCGGGTGGCAAGATGACGC+CGG | 0.632741 | 5_3:+49167926 | None:intergenic |
TGTGTTCATACGAGAGCGGG+TGG | 0.632851 | 5_3:+49173879 | None:intergenic |
ACAAAGGATTGCCTCTCAAG+TGG | 0.632964 | 5_3:-49173076 | Msa0815550:intron |
ACGGAAGCAATAAATTACTT+GGG | 0.633796 | 5_3:+49171097 | None:intergenic |
TTCAACAGAGAAATCAACAA+AGG | 0.638419 | 5_3:+49173152 | None:intergenic |
GGACAGGAATACGTATGGCA+AGG | 0.638744 | 5_3:-49173960 | Msa0815550:CDS |
ACGGTGAAGACAGTGTGAAG+TGG | 0.646133 | 5_3:-49171071 | Msa0815550:CDS |
ACTACACAATACCACTTGAG+AGG | 0.646158 | 5_3:+49173065 | None:intergenic |
ACTGATCAGGTGGAGCTCTG+GGG | 0.664570 | 5_3:-49170543 | Msa0815550:CDS |
TTTCTGCAATCTCAAGCGGG+TGG | 0.665473 | 5_3:+49167912 | None:intergenic |
CAAATGGTGTCTACTCCAGG+AGG | 0.700830 | 5_3:+49173107 | None:intergenic |
TTGAAGTTGATCAAGAACTG+CGG | 0.715913 | 5_3:-49174017 | Msa0815550:five_prime_UTR |
GTGTTGTGTTCATACGAGAG+CGG | 0.728695 | 5_3:+49173875 | None:intergenic |
TAAATCTGAACAAAGTACCG+GGG | 0.740964 | 5_3:-49169113 | Msa0815550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAAAATAAAAAATGTATTT+TGG | - | chr5_3:49168088-49168107 | Msa0815550:intron | 10.0% |
!!! | TTTATTGTATTATGTTTTAT+TGG | - | chr5_3:49169243-49169262 | Msa0815550:intron | 10.0% |
!!! | TTTAATATTGTGATTTTTTT+TGG | - | chr5_3:49170111-49170130 | Msa0815550:intron | 10.0% |
!!! | GTTAATTCTAAAAAAATTAA+AGG | + | chr5_3:49170875-49170894 | None:intergenic | 10.0% |
!!! | TGTGATATGTTATTTTTTAT+TGG | - | chr5_3:49168305-49168324 | Msa0815550:intron | 15.0% |
!! | TAAAATTGTAATGCTAAATT+TGG | + | chr5_3:49168723-49168742 | None:intergenic | 15.0% |
!!! | ATTTAGCATTACAATTTTAA+AGG | - | chr5_3:49168724-49168743 | Msa0815550:intron | 15.0% |
!! | AACATAATACAATAAAACAA+AGG | + | chr5_3:49169239-49169258 | None:intergenic | 15.0% |
!!! | ATTTTAGCATTGAAATTATA+AGG | - | chr5_3:49169508-49169527 | Msa0815550:intron | 15.0% |
!!! | TTTTAGCATTGAAATTATAA+GGG | - | chr5_3:49169509-49169528 | Msa0815550:intron | 15.0% |
!! | TATTGTATTGTATGTTTAAT+TGG | - | chr5_3:49169848-49169867 | Msa0815550:intron | 15.0% |
!! | ATTGTATTGTATGTTTAATT+GGG | - | chr5_3:49169849-49169868 | Msa0815550:intron | 15.0% |
!!! | AACTGGATTTTAATTTTTTA+TGG | - | chr5_3:49171004-49171023 | Msa0815550:intron | 15.0% |
!! | AAAAGTTATTAAAATACACA+CGG | - | chr5_3:49171823-49171842 | Msa0815550:intron | 15.0% |
!! | AACAAAAAGTAAGTTTAATA+TGG | + | chr5_3:49173021-49173040 | None:intergenic | 15.0% |
!!! | TTTTGTTTTTTGTTGTTTTA+TGG | - | chr5_3:49173439-49173458 | Msa0815550:intron | 15.0% |
!!! | GTTTTTTCAGTAAAATATAA+AGG | + | chr5_3:49173899-49173918 | None:intergenic | 15.0% |
!! | ATAAAAATAAAACGAGAAAG+AGG | + | chr5_3:49167783-49167802 | None:intergenic | 20.0% |
!! | TAAAACTTTATGTATTGTTC+TGG | - | chr5_3:49167986-49168005 | Msa0815550:CDS | 20.0% |
!!! | CAAGAATTCATGTTTTTATT+CGG | - | chr5_3:49168170-49168189 | Msa0815550:intron | 20.0% |
!!! | TTTTTGTAACTCGTTTAATT+TGG | + | chr5_3:49168235-49168254 | None:intergenic | 20.0% |
!!! | TTGATTTGCTAAAAAAACAA+GGG | + | chr5_3:49168273-49168292 | None:intergenic | 20.0% |
!!! | TTTGATTTGCTAAAAAAACA+AGG | + | chr5_3:49168274-49168293 | None:intergenic | 20.0% |
!!! | CATTTTGTTTGTGATTTTTT+AGG | - | chr5_3:49168423-49168442 | Msa0815550:intron | 20.0% |
!!! | TAAATCGTTATTTTAGTTGT+TGG | - | chr5_3:49168604-49168623 | Msa0815550:intron | 20.0% |
!! | ATATCAATCAATTTATAGCA+TGG | + | chr5_3:49168952-49168971 | None:intergenic | 20.0% |
!! | ATAAAGGGAGATATATTAAA+GGG | + | chr5_3:49169357-49169376 | None:intergenic | 20.0% |
!! | AATAAAGGGAGATATATTAA+AGG | + | chr5_3:49169358-49169377 | None:intergenic | 20.0% |
!! | TTTAATATATCTCCCTTTAT+TGG | - | chr5_3:49169357-49169376 | Msa0815550:intron | 20.0% |
!!! | CTGTTTTAAAAACCAATAAA+GGG | + | chr5_3:49169372-49169391 | None:intergenic | 20.0% |
!!! | ACTGTTTTAAAAACCAATAA+AGG | + | chr5_3:49169373-49169392 | None:intergenic | 20.0% |
!!! | TTTCTATTTTGCAAATTTGA+GGG | + | chr5_3:49169550-49169569 | None:intergenic | 20.0% |
!!! | ATTTCTATTTTGCAAATTTG+AGG | + | chr5_3:49169551-49169570 | None:intergenic | 20.0% |
!!! | GATTATTTGAGTTAATATGT+AGG | - | chr5_3:49169668-49169687 | Msa0815550:intron | 20.0% |
!!! | ACTAAAAGAAATTTTGATTC+AGG | - | chr5_3:49169717-49169736 | Msa0815550:intron | 20.0% |
!! | TTGTATTGTATGTTTAATTG+GGG | - | chr5_3:49169850-49169869 | Msa0815550:intron | 20.0% |
!! | TTTGTTTCATAATTGTTACA+AGG | + | chr5_3:49170306-49170325 | None:intergenic | 20.0% |
!!! | GTTATTTTAGTCTTTTTCAA+TGG | - | chr5_3:49170697-49170716 | Msa0815550:intron | 20.0% |
!!! | AAATTTTCTCGATAGTTAAT+GGG | + | chr5_3:49170917-49170936 | None:intergenic | 20.0% |
!! | AATTTGTAATGTCATTATGA+TGG | - | chr5_3:49170932-49170951 | Msa0815550:intron | 20.0% |
!!! | GGATTTTAATTTTTTATGGT+AGG | - | chr5_3:49171008-49171027 | Msa0815550:intron | 20.0% |
!! | AAACAACAAAATAAAAAGGA+AGG | - | chr5_3:49171335-49171354 | Msa0815550:intron | 20.0% |
!! | AACAACAAAATAAAAAGGAA+GGG | - | chr5_3:49171336-49171355 | Msa0815550:intron | 20.0% |
!!! | TATTTATTCCCTTTTTGTTT+TGG | - | chr5_3:49171447-49171466 | Msa0815550:CDS | 20.0% |
!!! | ACATTAAACATGTTGAATTT+TGG | - | chr5_3:49171690-49171709 | Msa0815550:intron | 20.0% |
!! | ACATGATACAATATTTGTTT+AGG | + | chr5_3:49171762-49171781 | None:intergenic | 20.0% |
!! | ATATTGTATCATGTACAAAT+TGG | - | chr5_3:49171768-49171787 | Msa0815550:intron | 20.0% |
!! | ATAATTCAACAAAAGAAATG+TGG | - | chr5_3:49171952-49171971 | Msa0815550:intron | 20.0% |
!! | TGAATAAAGTTAAACTGAAA+AGG | - | chr5_3:49172705-49172724 | Msa0815550:intron | 20.0% |
!! | TGGAAATATATTGCATAAAA+GGG | + | chr5_3:49172808-49172827 | None:intergenic | 20.0% |
!! | TTGGAAATATATTGCATAAA+AGG | + | chr5_3:49172809-49172828 | None:intergenic | 20.0% |
!!! | TTTAAGGTTGGATTATTTTA+TGG | - | chr5_3:49172855-49172874 | Msa0815550:intron | 20.0% |
!! | AAAAGTAAGTTTAATATGGA+TGG | + | chr5_3:49173017-49173036 | None:intergenic | 20.0% |
!! | TAACAAACAGTTATTAGAAA+GGG | + | chr5_3:49173531-49173550 | None:intergenic | 20.0% |
!! | ATAACAAACAGTTATTAGAA+AGG | + | chr5_3:49173532-49173551 | None:intergenic | 20.0% |
!! | TATATAATAGATGTACAGAA+TGG | - | chr5_3:49173937-49173956 | Msa0815550:CDS | 20.0% |
!! | TGTAAAATAGAAAACGAATT+AGG | + | chr5_3:49173986-49174005 | None:intergenic | 20.0% |
!! | AAAGTGTAATATATGTTAAC+TGG | - | chr5_3:49174010-49174029 | Msa0815550:five_prime_UTR | 20.0% |
! | AAATTGCAGCAAATGTAAAA+AGG | + | chr5_3:49167898-49167917 | None:intergenic | 25.0% |
! | GTAAGCAAGAAAATCAATAA+TGG | + | chr5_3:49167942-49167961 | None:intergenic | 25.0% |
!! | TTGATAGTCTATTATACTCT+TGG | - | chr5_3:49168116-49168135 | Msa0815550:intron | 25.0% |
!! | TTAATTTGGAAACTGATCAT+GGG | + | chr5_3:49168221-49168240 | None:intergenic | 25.0% |
!!! | TTTAATTTGGAAACTGATCA+TGG | + | chr5_3:49168222-49168241 | None:intergenic | 25.0% |
!!! | TGGAAGTTATTGAAGTATTT+TGG | - | chr5_3:49168360-49168379 | Msa0815550:intron | 25.0% |
!!! | GTTTGTGATTTTTTAGGTTT+TGG | - | chr5_3:49168429-49168448 | Msa0815550:intron | 25.0% |
!!! | TTTTAGTTGTTGGAATTCTA+AGG | - | chr5_3:49168614-49168633 | Msa0815550:intron | 25.0% |
! | TTTAGTTGTTGGAATTCTAA+GGG | - | chr5_3:49168615-49168634 | Msa0815550:intron | 25.0% |
! | CCAATATAGTTCAATTTAAG+AGG | + | chr5_3:49168683-49168702 | None:intergenic | 25.0% |
! | CCTCTTAAATTGAACTATAT+TGG | - | chr5_3:49168680-49168699 | Msa0815550:intron | 25.0% |
! | ACTTGAATAATCTATTGTTG+CGG | + | chr5_3:49168766-49168785 | None:intergenic | 25.0% |
!!! | GATTATTCAAGTTGATATGT+AGG | - | chr5_3:49168774-49168793 | Msa0815550:intron | 25.0% |
!!! | TAGGTTTTCATTGATTTTGA+TGG | - | chr5_3:49168793-49168812 | Msa0815550:intron | 25.0% |
!!! | TAAAGAGGTATTTTGATTGA+GGG | - | chr5_3:49168827-49168846 | Msa0815550:intron | 25.0% |
! | TTTGATTAACTGTAAAACCA+GGG | - | chr5_3:49168859-49168878 | Msa0815550:intron | 25.0% |
!! | TATCAATCAGTGTTGTTAAA+TGG | + | chr5_3:49169138-49169157 | None:intergenic | 25.0% |
! | AACTGACATTGTTCAATTAA+GGG | + | chr5_3:49169579-49169598 | None:intergenic | 25.0% |
! | TAACTGACATTGTTCAATTA+AGG | + | chr5_3:49169580-49169599 | None:intergenic | 25.0% |
! | AAAAATCGTGATGCTAAATT+TGG | + | chr5_3:49169617-49169636 | None:intergenic | 25.0% |
!! | ATTTAGCATCACGATTTTTA+AGG | - | chr5_3:49169618-49169637 | Msa0815550:intron | 25.0% |
!!! | TTTGCTATTTCGTAAATTTG+AGG | - | chr5_3:49169778-49169797 | Msa0815550:intron | 25.0% |
!!! | TTGCTATTTCGTAAATTTGA+GGG | - | chr5_3:49169779-49169798 | Msa0815550:intron | 25.0% |
! | TGTATTAGAATGAACTTTCA+TGG | - | chr5_3:49169903-49169922 | Msa0815550:intron | 25.0% |
!!! | CTTGTTTTCAAAGCATTTTA+TGG | - | chr5_3:49169967-49169986 | Msa0815550:intron | 25.0% |
!! | TCTTTTTGATCTTTTGTGTA+TGG | - | chr5_3:49170167-49170186 | Msa0815550:intron | 25.0% |
! | ATGAAGTCTTCAATGAAATT+TGG | - | chr5_3:49170235-49170254 | Msa0815550:intron | 25.0% |
! | TGAAGTCTTCAATGAAATTT+GGG | - | chr5_3:49170236-49170255 | Msa0815550:intron | 25.0% |
! | GATTCACTACAAATGTTTAA+TGG | - | chr5_3:49170428-49170447 | Msa0815550:intron | 25.0% |
! | GATTTAATATAGCTATGCAT+TGG | + | chr5_3:49170472-49170491 | None:intergenic | 25.0% |
! | TAAGGAAATTATGATGTCAA+TGG | - | chr5_3:49170743-49170762 | Msa0815550:intron | 25.0% |
! | TTAGTGAAACTTGGTTAATT+AGG | - | chr5_3:49170794-49170813 | Msa0815550:intron | 25.0% |
!! | CAAATTTTCTCGATAGTTAA+TGG | + | chr5_3:49170918-49170937 | None:intergenic | 25.0% |
!!! | TTATTTTTACTGAGCTTAAC+TGG | - | chr5_3:49170987-49171006 | Msa0815550:intron | 25.0% |
! | GGGAAAACAACAAAATAAAA+AGG | - | chr5_3:49171331-49171350 | Msa0815550:intron | 25.0% |
! | ATACGATGATGATTAGAATT+CGG | - | chr5_3:49171504-49171523 | Msa0815550:intron | 25.0% |
!! | AGTTCAATTTGCTTTGATTT+AGG | - | chr5_3:49171600-49171619 | Msa0815550:intron | 25.0% |
!! | ATTTGCTTTGATTTAGGAAT+AGG | - | chr5_3:49171606-49171625 | Msa0815550:intron | 25.0% |
!! | GCATTTTATTCTAGACATAT+AGG | - | chr5_3:49171712-49171731 | Msa0815550:intron | 25.0% |
! | TGAAACTCAGTTTCTATTAT+GGG | + | chr5_3:49171739-49171758 | None:intergenic | 25.0% |
! | ATAGTGTCTATTGATATATG+TGG | + | chr5_3:49171894-49171913 | None:intergenic | 25.0% |
!!! | GAAATTGTAACTGATTTTGT+TGG | - | chr5_3:49172037-49172056 | Msa0815550:intron | 25.0% |
! | CTGACATATTTATTAGTAGA+GGG | - | chr5_3:49172077-49172096 | Msa0815550:intron | 25.0% |
! | TAATCTATTTGTAACATGCT+TGG | - | chr5_3:49172109-49172128 | Msa0815550:intron | 25.0% |
! | TAGATTAGTGCTAATCAATT+AGG | - | chr5_3:49172254-49172273 | Msa0815550:intron | 25.0% |
!! | ACATGATTTGCAGTAATTTA+TGG | - | chr5_3:49172341-49172360 | Msa0815550:intron | 25.0% |
!! | TCCTCTTTCATTTTCTTTTA+TGG | - | chr5_3:49172612-49172631 | Msa0815550:intron | 25.0% |
! | TCCATAAAAGAAAATGAAAG+AGG | + | chr5_3:49172616-49172635 | None:intergenic | 25.0% |
!!! | TGGATTATTTTATGGCATAT+TGG | - | chr5_3:49172863-49172882 | Msa0815550:intron | 25.0% |
! | TTAACATCTTCTATCTTGTT+AGG | - | chr5_3:49173039-49173058 | Msa0815550:intron | 25.0% |
! | TATTCAGTTTAAAAGCTCTA+TGG | + | chr5_3:49173233-49173252 | None:intergenic | 25.0% |
!! | TCATTAACAAAGGAATTTTC+TGG | + | chr5_3:49173623-49173642 | None:intergenic | 25.0% |
! | TGCATCTAATTCATTAACAA+AGG | + | chr5_3:49173633-49173652 | None:intergenic | 25.0% |
!!! | ATTTTCTAAAATCCCAATCA+AGG | - | chr5_3:49174039-49174058 | Msa0815550:five_prime_UTR | 25.0% |
!!! | TTTTCTAAAATCCCAATCAA+GGG | - | chr5_3:49174040-49174059 | Msa0815550:five_prime_UTR | 25.0% |
TCATGAAGATGAATTTGAAG+AGG | + | chr5_3:49167697-49167716 | None:intergenic | 30.0% | |
TAAAACGAGAAAGAGGAAAA+GGG | + | chr5_3:49167776-49167795 | None:intergenic | 30.0% | |
ATAAAACGAGAAAGAGGAAA+AGG | + | chr5_3:49167777-49167796 | None:intergenic | 30.0% | |
! | AAGTTCCGATTTTTACATCA+TGG | - | chr5_3:49167844-49167863 | Msa0815550:CDS | 30.0% |
! | AGTTCCGATTTTTACATCAT+GGG | - | chr5_3:49167845-49167864 | Msa0815550:CDS | 30.0% |
AAACCCCATGATGTAAAAAT+CGG | + | chr5_3:49167852-49167871 | None:intergenic | 30.0% | |
GTAAAAAGGTGAAAACTTTG+AGG | + | chr5_3:49167884-49167903 | None:intergenic | 30.0% | |
TTGGATAAAAAGTTGTCTCA+TGG | - | chr5_3:49168135-49168154 | Msa0815550:intron | 30.0% | |
!! | CATTTGCTACATGTTTTATC+CGG | - | chr5_3:49168194-49168213 | Msa0815550:intron | 30.0% |
! | TGGTGTGTATTTGTTGAATA+CGG | - | chr5_3:49168325-49168344 | Msa0815550:intron | 30.0% |
TTCAACAGAGAAATCAACAA+AGG | + | chr5_3:49168475-49168494 | None:intergenic | 30.0% | |
! | ATGGATGTTTTCTACTAAAG+AGG | - | chr5_3:49168812-49168831 | Msa0815550:intron | 30.0% |
!!! | CTAAAGAGGTATTTTGATTG+AGG | - | chr5_3:49168826-49168845 | Msa0815550:intron | 30.0% |
GTTTGATTAACTGTAAAACC+AGG | - | chr5_3:49168858-49168877 | Msa0815550:intron | 30.0% | |
ATTGATATCAATGTTGTCGA+TGG | - | chr5_3:49168964-49168983 | Msa0815550:intron | 30.0% | |
!! | TGTTTTATTGGTGTAGAGAT+AGG | - | chr5_3:49169255-49169274 | Msa0815550:intron | 30.0% |
!! | GTTTTATTGGTGTAGAGATA+GGG | - | chr5_3:49169256-49169275 | Msa0815550:intron | 30.0% |
GTAACAATTGAAGAAAACCA+AGG | + | chr5_3:49169419-49169438 | None:intergenic | 30.0% | |
! | AGCATTGAAATTATAAGGGT+CGG | - | chr5_3:49169513-49169532 | Msa0815550:intron | 30.0% |
! | AGGTTTTCCATTGAATTTGA+TGG | - | chr5_3:49169688-49169707 | Msa0815550:intron | 30.0% |
TCAACAACCATCAAATTCAA+TGG | + | chr5_3:49169698-49169717 | None:intergenic | 30.0% | |
!! | TTGACGTTCTTTTATTTCAG+AGG | - | chr5_3:49169751-49169770 | Msa0815550:intron | 30.0% |
TAAACCAATATTTCAGTCCT+CGG | + | chr5_3:49169820-49169839 | None:intergenic | 30.0% | |
! | TTCTAATACATCTGATTCGT+AGG | + | chr5_3:49169893-49169912 | None:intergenic | 30.0% |
AAGGGTAAACAAATTGATAC+TGG | + | chr5_3:49169932-49169951 | None:intergenic | 30.0% | |
!! | ATGCTTTGAAAACAAGTGAA+GGG | + | chr5_3:49169963-49169982 | None:intergenic | 30.0% |
!! | AATGCTTTGAAAACAAGTGA+AGG | + | chr5_3:49169964-49169983 | None:intergenic | 30.0% |
ACAGTTGAAAAACATTGACA+AGG | + | chr5_3:49170004-49170023 | None:intergenic | 30.0% | |
!!! | ATTGTGATTTTTTTTGGCCA+TGG | - | chr5_3:49170117-49170136 | Msa0815550:intron | 30.0% |
GTTCTTACTGTTAAATTCCA+CGG | + | chr5_3:49170204-49170223 | None:intergenic | 30.0% | |
ACAAATGATTGAAATCTGCT+TGG | - | chr5_3:49170321-49170340 | Msa0815550:intron | 30.0% | |
CAAATGATTGAAATCTGCTT+GGG | - | chr5_3:49170322-49170341 | Msa0815550:intron | 30.0% | |
AAATGATTGAAATCTGCTTG+GGG | - | chr5_3:49170323-49170342 | Msa0815550:intron | 30.0% | |
!!! | TTTTTTAGCTGAAATTCCGA+AGG | - | chr5_3:49170382-49170401 | Msa0815550:intron | 30.0% |
! | ATTTTCACATTAGTGACCTT+CGG | + | chr5_3:49170401-49170420 | None:intergenic | 30.0% |
ACGGAAGCAATAAATTACTT+GGG | + | chr5_3:49170530-49170549 | None:intergenic | 30.0% | |
! | TTTTATCATGCATAAGCATG+AGG | + | chr5_3:49170663-49170682 | None:intergenic | 30.0% |
TGTATAGTATGAGGATAGTA+AGG | - | chr5_3:49170725-49170744 | Msa0815550:intron | 30.0% | |
AAATTATGATGTCAATGGAC+AGG | - | chr5_3:49170748-49170767 | Msa0815550:intron | 30.0% | |
AATTATGATGTCAATGGACA+GGG | - | chr5_3:49170749-49170768 | Msa0815550:intron | 30.0% | |
! | TAATTAGGCTTATTGAGTTG+AGG | - | chr5_3:49170809-49170828 | Msa0815550:intron | 30.0% |
TAGGCTGCATATGTAATAAA+TGG | - | chr5_3:49171027-49171046 | Msa0815550:intron | 30.0% | |
AGAATAGTGTTACACGAAAT+TGG | - | chr5_3:49171221-49171240 | Msa0815550:intron | 30.0% | |
GAATAGTGTTACACGAAATT+GGG | - | chr5_3:49171222-49171241 | Msa0815550:intron | 30.0% | |
!!! | ATTCCCTTTTTGTTTTGGTA+TGG | - | chr5_3:49171452-49171471 | Msa0815550:CDS | 30.0% |
ATGCCATACCAAAACAAAAA+GGG | + | chr5_3:49171458-49171477 | None:intergenic | 30.0% | |
TATGCCATACCAAAACAAAA+AGG | + | chr5_3:49171459-49171478 | None:intergenic | 30.0% | |
! | GCATACACTTTTCAATATTC+AGG | - | chr5_3:49171474-49171493 | Msa0815550:CDS | 30.0% |
TACGATGATGATTAGAATTC+GGG | - | chr5_3:49171505-49171524 | Msa0815550:intron | 30.0% | |
CTAGATAAGTATCTATAGCT+TGG | + | chr5_3:49171632-49171651 | None:intergenic | 30.0% | |
GTGAAACTCAGTTTCTATTA+TGG | + | chr5_3:49171740-49171759 | None:intergenic | 30.0% | |
! | TATATTGTGCAACTTGTTCT+TGG | + | chr5_3:49171862-49171881 | None:intergenic | 30.0% |
AAGAAATGTGGAAAAAACAC+AGG | - | chr5_3:49171964-49171983 | Msa0815550:intron | 30.0% | |
GCTGACATATTTATTAGTAG+AGG | - | chr5_3:49172076-49172095 | Msa0815550:intron | 30.0% | |
TTACAAATAGATTAAGTCCG+AGG | + | chr5_3:49172103-49172122 | None:intergenic | 30.0% | |
TCTAGAAAGTTGTATACTCT+AGG | + | chr5_3:49172238-49172257 | None:intergenic | 30.0% | |
TATTTGCATGACAGGTAATT+TGG | - | chr5_3:49172406-49172425 | Msa0815550:intron | 30.0% | |
! | GTAATTTGGAATCCTATAGA+CGG | - | chr5_3:49172420-49172439 | Msa0815550:intron | 30.0% |
! | TAATTTGGAATCCTATAGAC+GGG | - | chr5_3:49172421-49172440 | Msa0815550:intron | 30.0% |
ACTAAATCTGAACAAAGTAC+CGG | - | chr5_3:49172509-49172528 | Msa0815550:intron | 30.0% | |
GACAAAACAGCAATCTAAAT+TGG | + | chr5_3:49172594-49172613 | None:intergenic | 30.0% | |
CTTCCATTTCTATGATCAAT+TGG | - | chr5_3:49172681-49172700 | Msa0815550:intron | 30.0% | |
AGGAAACATGAGAAAAGAAA+AGG | - | chr5_3:49172725-49172744 | Msa0815550:intron | 30.0% | |
! | GTCAATAAGTTTTCCTAGAT+TGG | - | chr5_3:49172763-49172782 | Msa0815550:intron | 30.0% |
TATTGGCATTTCATAGAATG+TGG | - | chr5_3:49172880-49172899 | Msa0815550:intron | 30.0% | |
ATTGGCATTTCATAGAATGT+GGG | - | chr5_3:49172881-49172900 | Msa0815550:intron | 30.0% | |
! | TGTCAAAAGTACACTCAAAA+TGG | + | chr5_3:49172957-49172976 | None:intergenic | 30.0% |
! | TTTGAGTGTACTTTTGACAT+TGG | - | chr5_3:49172958-49172977 | Msa0815550:intron | 30.0% |
GTTTAATATGGATGGAGAAA+AGG | + | chr5_3:49173009-49173028 | None:intergenic | 30.0% | |
AGTCCACAAATATAAACGAA+CGG | + | chr5_3:49173073-49173092 | None:intergenic | 30.0% | |
CATGACTTACAATCTTCATT+GGG | + | chr5_3:49173195-49173214 | None:intergenic | 30.0% | |
ACATGACTTACAATCTTCAT+TGG | + | chr5_3:49173196-49173215 | None:intergenic | 30.0% | |
TTTCCATGTTTGTCTTATGT+TGG | - | chr5_3:49173275-49173294 | Msa0815550:intron | 30.0% | |
!!! | TTTTTTGTTGTTTTATGGCG+AGG | - | chr5_3:49173444-49173463 | Msa0815550:intron | 30.0% |
!!! | TTTTTGTTGTTTTATGGCGA+GGG | - | chr5_3:49173445-49173464 | Msa0815550:intron | 30.0% |
! | CAAGAAAAAGGTATATCCAA+GGG | + | chr5_3:49173770-49173789 | None:intergenic | 30.0% |
! | CTTGGATATACCTTTTTCTT+GGG | - | chr5_3:49173769-49173788 | Msa0815550:intron | 30.0% |
! | TTGAAGTTGATCAAGAACTG+CGG | - | chr5_3:49167607-49167626 | Msa0815550:three_prime_UTR | 35.0% |
GTAAAAATCGGAACTTGAAG+TGG | + | chr5_3:49167840-49167859 | None:intergenic | 35.0% | |
! | GTTCCGATTTTTACATCATG+GGG | - | chr5_3:49167846-49167865 | Msa0815550:CDS | 35.0% |
!!! | TTTTTTAGGTTTTGGCTCCT+AGG | - | chr5_3:49168437-49168456 | Msa0815550:intron | 35.0% |
!! | ACCATTTGGTTTGAGTACAA+AGG | - | chr5_3:49168532-49168551 | Msa0815550:CDS | 35.0% |
TCCTTTGTACTCAAACCAAA+TGG | + | chr5_3:49168536-49168555 | None:intergenic | 35.0% | |
CACAGAAAGTAAACTCTACA+AGG | + | chr5_3:49168900-49168919 | None:intergenic | 35.0% | |
!! | ATGTTATTATGGCGGATTTC+TGG | + | chr5_3:49169007-49169026 | None:intergenic | 35.0% |
ATTGAAGAAAACCAAGGACA+AGG | + | chr5_3:49169413-49169432 | None:intergenic | 35.0% | |
AAACCAATATTTCAGTCCTC+GGG | + | chr5_3:49169819-49169838 | None:intergenic | 35.0% | |
TGTTTAATTGGGGCAGATAT+TGG | - | chr5_3:49169860-49169879 | Msa0815550:intron | 35.0% | |
GTTTAATTGGGGCAGATATT+GGG | - | chr5_3:49169861-49169880 | Msa0815550:intron | 35.0% | |
!! | TGCTTTGAAAACAAGTGAAG+GGG | + | chr5_3:49169962-49169981 | None:intergenic | 35.0% |
GTTGAAAAACATTGACAAGG+TGG | + | chr5_3:49170001-49170020 | None:intergenic | 35.0% | |
TTGTACAGGTATATACCAAC+TGG | - | chr5_3:49170141-49170160 | Msa0815550:intron | 35.0% | |
AGATCAAAAAGAACTCCAGT+TGG | + | chr5_3:49170159-49170178 | None:intergenic | 35.0% | |
! | TTTTGTGTATGGAACCAGAA+AGG | - | chr5_3:49170178-49170197 | Msa0815550:intron | 35.0% |
AGTCTTCAATGAAATTTGGG+TGG | - | chr5_3:49170239-49170258 | Msa0815550:intron | 35.0% | |
CACGGAAGCAATAAATTACT+TGG | + | chr5_3:49170531-49170550 | None:intergenic | 35.0% | |
AATTTATTGCTTCCGTGTGA+CGG | - | chr5_3:49170534-49170553 | Msa0815550:CDS | 35.0% | |
CTTTATCAACTCACTGAAAG+AGG | - | chr5_3:49170578-49170597 | Msa0815550:CDS | 35.0% | |
CATGATAAAACTATCTGCGT+TGG | - | chr5_3:49170673-49170692 | Msa0815550:intron | 35.0% | |
ATGGTCGTTTGTATAGTATG+AGG | - | chr5_3:49170716-49170735 | Msa0815550:intron | 35.0% | |
GGGATATCATTAGTGAAACT+TGG | - | chr5_3:49170785-49170804 | Msa0815550:intron | 35.0% | |
!! | TTATTGAGTTGAGGTAATGG+TGG | - | chr5_3:49170818-49170837 | Msa0815550:intron | 35.0% |
CATGTAAGAAAACCCCATTT+AGG | - | chr5_3:49171182-49171201 | Msa0815550:intron | 35.0% | |
!! | AATTGGGTTGAACATAGAGT+TGG | - | chr5_3:49171238-49171257 | Msa0815550:intron | 35.0% |
!! | ATTGGGTTGAACATAGAGTT+GGG | - | chr5_3:49171239-49171258 | Msa0815550:intron | 35.0% |
TGTTAGCGACTGTTAATTCA+CGG | - | chr5_3:49171276-49171295 | Msa0815550:intron | 35.0% | |
AGATTATGAGGAGTAAGAAG+TGG | - | chr5_3:49171380-49171399 | Msa0815550:intron | 35.0% | |
! | TGATGATTAGAATTCGGGTT+AGG | - | chr5_3:49171510-49171529 | Msa0815550:intron | 35.0% |
AGCTTAATAAGGTACAGCTT+TGG | + | chr5_3:49171547-49171566 | None:intergenic | 35.0% | |
AAGCAAATTGAACTTCACCT+TGG | + | chr5_3:49171594-49171613 | None:intergenic | 35.0% | |
! | TAGTCACTTTGCAAGAGATA+AGG | - | chr5_3:49172003-49172022 | Msa0815550:intron | 35.0% |
!! | TGTTGGTTCAAGTGATCAAT+TGG | - | chr5_3:49172054-49172073 | Msa0815550:intron | 35.0% |
TATTTATTAGTAGAGGGCCT+CGG | - | chr5_3:49172083-49172102 | Msa0815550:intron | 35.0% | |
TCTACGAAGTTGTACAACTT+AGG | + | chr5_3:49172200-49172219 | None:intergenic | 35.0% | |
TGTCATGCAAATAGTAATGG+CGG | + | chr5_3:49172399-49172418 | None:intergenic | 35.0% | |
ACCTGTCATGCAAATAGTAA+TGG | + | chr5_3:49172402-49172421 | None:intergenic | 35.0% | |
! | CTAAATCTGAACAAAGTACC+GGG | - | chr5_3:49172510-49172529 | Msa0815550:intron | 35.0% |
!! | TAAATCTGAACAAAGTACCG+GGG | - | chr5_3:49172511-49172530 | Msa0815550:intron | 35.0% |
TCAAGTTCATATTGCTCACT+TGG | + | chr5_3:49172563-49172582 | None:intergenic | 35.0% | |
AAGTTAGGGAAAACGTGAAA+CGG | + | chr5_3:49172639-49172658 | None:intergenic | 35.0% | |
! | TCACGTTTTCCCTAACTTTT+TGG | - | chr5_3:49172641-49172660 | Msa0815550:intron | 35.0% |
GTCAAAGAGCCAAAAAGTTA+GGG | + | chr5_3:49172653-49172672 | None:intergenic | 35.0% | |
TGTCAAAGAGCCAAAAAGTT+AGG | + | chr5_3:49172654-49172673 | None:intergenic | 35.0% | |
CAGCCAATTGATCATAGAAA+TGG | + | chr5_3:49172687-49172706 | None:intergenic | 35.0% | |
CATGAGAAAAGAAAAGGCAA+AGG | - | chr5_3:49172731-49172750 | Msa0815550:intron | 35.0% | |
! | CCTGTAGTTTTCGACAATAT+TGG | + | chr5_3:49172828-49172847 | None:intergenic | 35.0% |
CCAATATTGTCGAAAACTAC+AGG | - | chr5_3:49172825-49172844 | Msa0815550:intron | 35.0% | |
TATTGTCGAAAACTACAGGT+TGG | - | chr5_3:49172829-49172848 | Msa0815550:intron | 35.0% | |
!!! | AACTACAGGTTGGTGTTTTA+AGG | - | chr5_3:49172839-49172858 | Msa0815550:intron | 35.0% |
! | TTGACATTGGTGACTTGAAT+TGG | - | chr5_3:49172971-49172990 | Msa0815550:intron | 35.0% |
! | GACTTGAATTGGTTTCATGT+AGG | - | chr5_3:49172982-49173001 | Msa0815550:intron | 35.0% |
CATCTTCTATCTTGTTAGGT+AGG | - | chr5_3:49173043-49173062 | Msa0815550:intron | 35.0% | |
TTCCCGTTCGTTTATATTTG+TGG | - | chr5_3:49173067-49173086 | Msa0815550:intron | 35.0% | |
GTCCACAAATATAAACGAAC+GGG | + | chr5_3:49173072-49173091 | None:intergenic | 35.0% | |
! | ATGCTCCAAACATTGATAAC+TGG | - | chr5_3:49173121-49173140 | Msa0815550:CDS | 35.0% |
! | TGCTCCAAACATTGATAACT+GGG | - | chr5_3:49173122-49173141 | Msa0815550:CDS | 35.0% |
TTGTCCCAGTTATCAATGTT+TGG | + | chr5_3:49173129-49173148 | None:intergenic | 35.0% | |
ATCTCATTGGAAATCTCAAC+AGG | + | chr5_3:49173171-49173190 | None:intergenic | 35.0% | |
ATCTTCATTGGGAATCTCAT+TGG | + | chr5_3:49173184-49173203 | None:intergenic | 35.0% | |
TCAGTTTAAAAGCTCTATGG+AGG | + | chr5_3:49173230-49173249 | None:intergenic | 35.0% | |
GAACCAACATAAGACAAACA+TGG | + | chr5_3:49173281-49173300 | None:intergenic | 35.0% | |
AATGTTACACATAGCTGAGA+CGG | + | chr5_3:49173374-49173393 | None:intergenic | 35.0% | |
!!! | GAATTTTCTGGAAAGTACTC+GGG | + | chr5_3:49173611-49173630 | None:intergenic | 35.0% |
!!! | GGAATTTTCTGGAAAGTACT+CGG | + | chr5_3:49173612-49173631 | None:intergenic | 35.0% |
GCAAACATAAATCAAAGCAC+AGG | - | chr5_3:49173650-49173669 | Msa0815550:intron | 35.0% | |
TTGATTTCTGCAATCTCAAG+CGG | + | chr5_3:49173719-49173738 | None:intergenic | 35.0% | |
! | CCAAGAAAAAGGTATATCCA+AGG | + | chr5_3:49173771-49173790 | None:intergenic | 35.0% |
! | CCTTGGATATACCTTTTTCT+TGG | - | chr5_3:49173768-49173787 | Msa0815550:intron | 35.0% |
TTGTGAATCACCCAAGAAAA+AGG | + | chr5_3:49173782-49173801 | None:intergenic | 35.0% | |
CACATGTGAAGGAAATAATC+AGG | + | chr5_3:49173815-49173834 | None:intergenic | 35.0% | |
ACCAGAACGTAGAAGAAGAA+GGG | - | chr5_3:49167573-49167592 | Msa0815550:three_prime_UTR | 40.0% | |
GATCTGGAAGAGATGAATGA+AGG | - | chr5_3:49167643-49167662 | Msa0815550:three_prime_UTR | 40.0% | |
ATGAAGGACAGGAATACGTA+TGG | - | chr5_3:49167659-49167678 | Msa0815550:three_prime_UTR | 40.0% | |
GTTGTCTCATGGTTAAGTGA+TGG | - | chr5_3:49168146-49168165 | Msa0815550:intron | 40.0% | |
!! | GAATACGGTGTTGCTTTAAC+TGG | - | chr5_3:49168340-49168359 | Msa0815550:intron | 40.0% |
ACTACACAATACCACTTGAG+AGG | + | chr5_3:49168562-49168581 | None:intergenic | 40.0% | |
! | GTTGTTGGAATTCTAAGGGT+TGG | - | chr5_3:49168619-49168638 | Msa0815550:intron | 40.0% |
GATTAACTGTAAAACCAGGG+TGG | - | chr5_3:49168862-49168881 | Msa0815550:intron | 40.0% | |
GATATCAATGTTGTCGATGG+TGG | - | chr5_3:49168967-49168986 | Msa0815550:intron | 40.0% | |
GCAATGGCATGTTATTATGG+CGG | + | chr5_3:49169015-49169034 | None:intergenic | 40.0% | |
GCCATAATAACATGCCATTG+CGG | - | chr5_3:49169014-49169033 | Msa0815550:intron | 40.0% | |
!! | GTGCGCATCACTTTTCAAAT+TGG | - | chr5_3:49169054-49169073 | Msa0815550:intron | 40.0% |
TTCCCAACCCTTACAATTTG+AGG | - | chr5_3:49169209-49169228 | Msa0815550:intron | 40.0% | |
TCCCAACCCTTACAATTTGA+GGG | - | chr5_3:49169210-49169229 | Msa0815550:intron | 40.0% | |
TTGTTATGCTACCTTGTCCT+TGG | - | chr5_3:49169399-49169418 | Msa0815550:intron | 40.0% | |
GTTTCACGCTTATCTTGATG+CGG | - | chr5_3:49169640-49169659 | Msa0815550:intron | 40.0% | |
TAACCCGAGGACTGAAATAT+TGG | - | chr5_3:49169813-49169832 | Msa0815550:intron | 40.0% | |
AAGTGAAGGGGGAGATTAAA+GGG | + | chr5_3:49169950-49169969 | None:intergenic | 40.0% | |
!! | GCTTTGAAAACAAGTGAAGG+GGG | + | chr5_3:49169961-49169980 | None:intergenic | 40.0% |
GTATATACCTGTACAAGCCA+TGG | + | chr5_3:49170137-49170156 | None:intergenic | 40.0% | |
ATTGAAATCTGCTTGGGGAA+GGG | - | chr5_3:49170328-49170347 | Msa0815550:intron | 40.0% | |
TCTGTGTAGGTACACTTTAG+AGG | - | chr5_3:49170501-49170520 | Msa0815550:intron | 40.0% | |
!! | GGCTTATTGAGTTGAGGTAA+TGG | - | chr5_3:49170815-49170834 | Msa0815550:intron | 40.0% |
GAACATGTCTCAAACTGATC+AGG | - | chr5_3:49171068-49171087 | Msa0815550:CDS | 40.0% | |
GTTAGCGACTGTTAATTCAC+GGG | - | chr5_3:49171277-49171296 | Msa0815550:intron | 40.0% | |
TCTCTAGCTGAATTGGTTAG+AGG | - | chr5_3:49171301-49171320 | Msa0815550:intron | 40.0% | |
CTCTAGCTGAATTGGTTAGA+GGG | - | chr5_3:49171302-49171321 | Msa0815550:intron | 40.0% | |
TCTTGCAAAGTGACTACCAA+TGG | + | chr5_3:49171999-49172018 | None:intergenic | 40.0% | |
! | GCAAGAGATAAGGTTGTTTC+AGG | - | chr5_3:49172013-49172032 | Msa0815550:intron | 40.0% |
!! | AGTTTGTTGCTCTCTTCTCA+TGG | - | chr5_3:49172369-49172388 | Msa0815550:intron | 40.0% |
GCCATTACTATTTGCATGAC+AGG | - | chr5_3:49172398-49172417 | Msa0815550:intron | 40.0% | |
TAGTGTGAGAGAACCAATCT+AGG | + | chr5_3:49172779-49172798 | None:intergenic | 40.0% | |
!!! | ACAGGTTGGTGTTTTAAGGT+TGG | - | chr5_3:49172843-49172862 | Msa0815550:intron | 40.0% |
CTCAAAATGGAGTTCTATGC+AGG | + | chr5_3:49172944-49172963 | None:intergenic | 40.0% | |
TGACAAGAGTTGAAGAAGAG+TGG | + | chr5_3:49173502-49173521 | None:intergenic | 40.0% | |
AAATCAAAGCACAGGAGAAG+AGG | - | chr5_3:49173658-49173677 | Msa0815550:intron | 40.0% | |
AATCAAAGCACAGGAGAAGA+GGG | - | chr5_3:49173659-49173678 | Msa0815550:intron | 40.0% | |
GGGAGAAAATTCATCTGATC+CGG | - | chr5_3:49173679-49173698 | Msa0815550:intron | 40.0% | |
TGATTTCTGCAATCTCAAGC+GGG | + | chr5_3:49173718-49173737 | None:intergenic | 40.0% | |
TCAAGCAAACACACATGTGA+AGG | + | chr5_3:49173826-49173845 | None:intergenic | 40.0% | |
GAAAAACGGTTCCCTTGATT+GGG | + | chr5_3:49174054-49174073 | None:intergenic | 40.0% | |
ACCCTTCTTCTTCTACGTTC+TGG | + | chr5_3:49167577-49167596 | None:intergenic | 45.0% | |
GGAAGAGATGAATGAAGGAC+AGG | - | chr5_3:49167648-49167667 | Msa0815550:three_prime_UTR | 45.0% | |
TGTTGTGTTCATACGAGAGC+GGG | + | chr5_3:49167751-49167770 | None:intergenic | 45.0% | |
GTGTTGTGTTCATACGAGAG+CGG | + | chr5_3:49167752-49167771 | None:intergenic | 45.0% | |
TTGGAAACTGATCATGGGAC+CGG | + | chr5_3:49168216-49168235 | None:intergenic | 45.0% | |
!!! | TTAGGTTTTGGCTCCTAGGA+TGG | - | chr5_3:49168441-49168460 | Msa0815550:intron | 45.0% |
!!! | TAGGTTTTGGCTCCTAGGAT+GGG | - | chr5_3:49168442-49168461 | Msa0815550:CDS | 45.0% |
! | GGAAGTGTAGAGCAGAAATG+AGG | + | chr5_3:49168499-49168518 | None:intergenic | 45.0% |
AACCAAATGGTGTCTACTCC+AGG | + | chr5_3:49168523-49168542 | None:intergenic | 45.0% | |
ACAAAGGATTGCCTCTCAAG+TGG | - | chr5_3:49168548-49168567 | Msa0815550:CDS | 45.0% | |
TAGCATGGTTTCTTCCACGT+CGG | + | chr5_3:49168937-49168956 | None:intergenic | 45.0% | |
!! | CGATGGTGGAATATAGCGAA+AGG | - | chr5_3:49168981-49169000 | Msa0815550:intron | 45.0% |
GCCGCAATGGCATGTTATTA+TGG | + | chr5_3:49169018-49169037 | None:intergenic | 45.0% | |
TTGAAAAGTGATGCGCACCA+TGG | + | chr5_3:49169052-49169071 | None:intergenic | 45.0% | |
! | GTGTTGTTAAATGGCAGCCA+TGG | + | chr5_3:49169129-49169148 | None:intergenic | 45.0% |
GCCCTCAAATTGTAAGGGTT+GGG | + | chr5_3:49169214-49169233 | None:intergenic | 45.0% | |
AGCCCTCAAATTGTAAGGGT+TGG | + | chr5_3:49169215-49169234 | None:intergenic | 45.0% | |
AGGCAGCCCTCAAATTGTAA+GGG | + | chr5_3:49169219-49169238 | None:intergenic | 45.0% | |
AAGGCAGCCCTCAAATTGTA+AGG | + | chr5_3:49169220-49169239 | None:intergenic | 45.0% | |
GGACTAAATTGCTTAACCCG+AGG | - | chr5_3:49169800-49169819 | Msa0815550:intron | 45.0% | |
CAAGTGAAGGGGGAGATTAA+AGG | + | chr5_3:49169951-49169970 | None:intergenic | 45.0% | |
!! | TTTTTGGCCATGGCTTGTAC+AGG | - | chr5_3:49170127-49170146 | Msa0815550:intron | 45.0% |
GTTAAATTCCACGGCCTTTC+TGG | + | chr5_3:49170195-49170214 | None:intergenic | 45.0% | |
GATTGAAATCTGCTTGGGGA+AGG | - | chr5_3:49170327-49170346 | Msa0815550:intron | 45.0% | |
TTGAAATCTGCTTGGGGAAG+GGG | - | chr5_3:49170329-49170348 | Msa0815550:intron | 45.0% | |
AATCTGCGTACTCTCTGTGT+AGG | - | chr5_3:49170488-49170507 | Msa0815550:intron | 45.0% | |
GATGTCAATGGACAGGGTTA+TGG | - | chr5_3:49170755-49170774 | Msa0815550:intron | 45.0% | |
!! | GACAGGGTTATGGTTCTAGA+GGG | - | chr5_3:49170765-49170784 | Msa0815550:intron | 45.0% |
CATGTCTCAAACTGATCAGG+TGG | - | chr5_3:49171071-49171090 | Msa0815550:CDS | 45.0% | |
!!! | CTCTGGGGCTCTGTTTTAAA+TGG | - | chr5_3:49171096-49171115 | Msa0815550:CDS | 45.0% |
AAAACCCCATTTAGGTGCGT+AGG | - | chr5_3:49171190-49171209 | Msa0815550:intron | 45.0% | |
TCATCCTACGCACCTAAATG+GGG | + | chr5_3:49171197-49171216 | None:intergenic | 45.0% | |
CTCATCCTACGCACCTAAAT+GGG | + | chr5_3:49171198-49171217 | None:intergenic | 45.0% | |
AGCTGAATTGGTTAGAGGGA+AGG | - | chr5_3:49171306-49171325 | Msa0815550:intron | 45.0% | |
GCTGAATTGGTTAGAGGGAA+GGG | - | chr5_3:49171307-49171326 | Msa0815550:intron | 45.0% | |
AATTGGTTAGAGGGAAGGGA+GGG | - | chr5_3:49171311-49171330 | Msa0815550:intron | 45.0% | |
AAGGAAGGGAGACTATTTCC+AGG | - | chr5_3:49171350-49171369 | Msa0815550:intron | 45.0% | |
AGGAAGGGAGACTATTTCCA+GGG | - | chr5_3:49171351-49171370 | Msa0815550:intron | 45.0% | |
GAAGTGGAGTTCTCTTGTGT+TGG | - | chr5_3:49171396-49171415 | Msa0815550:intron | 45.0% | |
! | AGTTTGTTTGTGGATCGCCA+AGG | - | chr5_3:49171574-49171593 | Msa0815550:intron | 45.0% |
ACACAGGCTATATCTGCCAT+TGG | - | chr5_3:49171980-49171999 | Msa0815550:intron | 45.0% | |
CTTAGATGACACCCGTCTAT+AGG | + | chr5_3:49172435-49172454 | None:intergenic | 45.0% | |
ATCAAGTGTGTACGCGTTCA+AGG | - | chr5_3:49173734-49173753 | Msa0815550:intron | 45.0% | |
TCAAGTGTGTACGCGTTCAA+GGG | - | chr5_3:49173735-49173754 | Msa0815550:intron | 45.0% | |
TTATCCCTACTGCACAGCAT+TGG | + | chr5_3:49173861-49173880 | None:intergenic | 45.0% | |
!!! | TTAATTCTAAAAAAATTAAA+GGG | + | chr5_3:49170874-49170893 | None:intergenic | 5.0% |
GGACAGGAATACGTATGGCA+AGG | - | chr5_3:49167664-49167683 | Msa0815550:three_prime_UTR | 50.0% | |
!!! | AGGTTTTGGCTCCTAGGATG+GGG | - | chr5_3:49168443-49168462 | Msa0815550:CDS | 50.0% |
AAAGGCAAGTACCCCATCCT+AGG | + | chr5_3:49168457-49168476 | None:intergenic | 50.0% | |
TTCTGCTCTACACTTCCTCC+TGG | - | chr5_3:49168502-49168521 | Msa0815550:CDS | 50.0% | |
CAAATGGTGTCTACTCCAGG+AGG | + | chr5_3:49168520-49168539 | None:intergenic | 50.0% | |
CTCCTGGAGTAGACACCATT+TGG | - | chr5_3:49168518-49168537 | Msa0815550:CDS | 50.0% | |
TAACATGCCATTGCGGCCTA+TGG | - | chr5_3:49169021-49169040 | Msa0815550:intron | 50.0% | |
AAAAGTGATGCGCACCATGG+CGG | + | chr5_3:49169049-49169068 | None:intergenic | 50.0% | |
TCCTCCATGCTATTCTGCCA+TGG | - | chr5_3:49169098-49169117 | Msa0815550:CDS | 50.0% | |
ACCATGGCAGAATAGCATGG+AGG | + | chr5_3:49169102-49169121 | None:intergenic | 50.0% | |
GCAACCATGGCAGAATAGCA+TGG | + | chr5_3:49169105-49169124 | None:intergenic | 50.0% | |
ATTCTGCCATGGTTGCACCA+TGG | - | chr5_3:49169109-49169128 | Msa0815550:CDS | 50.0% | |
TGAAATCTGCTTGGGGAAGG+GGG | - | chr5_3:49170330-49170349 | Msa0815550:intron | 50.0% | |
ACACTGTCTTCACCGTCACA+CGG | + | chr5_3:49170549-49170568 | None:intergenic | 50.0% | |
ACGGTGAAGACAGTGTGAAG+TGG | - | chr5_3:49170553-49170572 | Msa0815550:CDS | 50.0% | |
!! | GGACAGGGTTATGGTTCTAG+AGG | - | chr5_3:49170764-49170783 | Msa0815550:intron | 50.0% |
AAACTGATCAGGTGGAGCTC+TGG | - | chr5_3:49171079-49171098 | Msa0815550:CDS | 50.0% | |
AACTGATCAGGTGGAGCTCT+GGG | - | chr5_3:49171080-49171099 | Msa0815550:CDS | 50.0% | |
CCTCATCCTACGCACCTAAA+TGG | + | chr5_3:49171199-49171218 | None:intergenic | 50.0% | |
CCATTTAGGTGCGTAGGATG+AGG | - | chr5_3:49171196-49171215 | Msa0815550:intron | 50.0% | |
CACGGGATCTCTAGCTGAAT+TGG | - | chr5_3:49171294-49171313 | Msa0815550:intron | 50.0% | |
GAATTGGTTAGAGGGAAGGG+AGG | - | chr5_3:49171310-49171329 | Msa0815550:intron | 50.0% | |
GGGAGACTATTTCCAGGGTA+TGG | - | chr5_3:49171356-49171375 | Msa0815550:intron | 50.0% | |
CCTCATAATCTGCCATACCC+TGG | + | chr5_3:49171371-49171390 | None:intergenic | 50.0% | |
CCAGGGTATGGCAGATTATG+AGG | - | chr5_3:49171368-49171387 | Msa0815550:intron | 50.0% | |
GACATGTATGCTCCAGCTTG+AGG | - | chr5_3:49172139-49172158 | Msa0815550:intron | 50.0% | |
CCAACAAACACTCCTCAAGC+TGG | + | chr5_3:49172154-49172173 | None:intergenic | 50.0% | |
!! | CCAGCTTGAGGAGTGTTTGT+TGG | - | chr5_3:49172151-49172170 | Msa0815550:intron | 50.0% |
TTTCTGCAATCTCAAGCGGG+TGG | + | chr5_3:49173715-49173734 | None:intergenic | 50.0% | |
TCAAGGGATAGATCTGCCCT+TGG | - | chr5_3:49173751-49173770 | Msa0815550:intron | 50.0% | |
AGAAGCCAATGCTGTGCAGT+AGG | - | chr5_3:49173853-49173872 | Msa0815550:intron | 50.0% | |
GAAGCCAATGCTGTGCAGTA+GGG | - | chr5_3:49173854-49173873 | Msa0815550:intron | 50.0% | |
CGGAGAGAGAGAGAGAGATC+TGG | - | chr5_3:49167627-49167646 | Msa0815550:three_prime_UTR | 55.0% | |
TGTGTTCATACGAGAGCGGG+TGG | + | chr5_3:49167748-49167767 | None:intergenic | 55.0% | |
! | GGCATAGCTTTTGTCCACCC+TGG | + | chr5_3:49168879-49168898 | None:intergenic | 55.0% |
TGGTTTCTTCCACGTCGGTG+TGG | + | chr5_3:49168932-49168951 | None:intergenic | 55.0% | |
!! | GTAGAGATAGGGCACTGTCC+TGG | - | chr5_3:49169267-49169286 | Msa0815550:intron | 55.0% |
CTGATCGACTGATCCTAGCC+AGG | + | chr5_3:49169288-49169307 | None:intergenic | 55.0% | |
GTATGGAACCAGAAAGGCCG+TGG | - | chr5_3:49170184-49170203 | Msa0815550:intron | 55.0% | |
ACTGATCAGGTGGAGCTCTG+GGG | - | chr5_3:49171081-49171100 | Msa0815550:CDS | 55.0% | |
GTTCATACGAGAGCGGGTGG+AGG | + | chr5_3:49167745-49167764 | None:intergenic | 60.0% | |
TGTTCAGCTCCACACCGACG+TGG | - | chr5_3:49168920-49168939 | Msa0815550:intron | 60.0% | |
TGGCAGCCATGGTGCAACCA+TGG | + | chr5_3:49169118-49169137 | None:intergenic | 60.0% | |
!! | GATAGGGCACTGTCCTGGCT+AGG | - | chr5_3:49169272-49169291 | Msa0815550:intron | 60.0% |
TCCAGCAGCTTCAGCATCCC+CGG | + | chr5_3:49172531-49172550 | None:intergenic | 60.0% | |
GGGTGGAGGAGGAGGAAGAG+TGG | + | chr5_3:49167731-49167750 | None:intergenic | 65.0% | |
CATACGAGAGCGGGTGGAGG+AGG | + | chr5_3:49167742-49167761 | None:intergenic | 65.0% | |
ACCGGGGATGCTGAAGCTGC+TGG | - | chr5_3:49172527-49172546 | Msa0815550:intron | 65.0% | |
AGCGGGTGGCAAGATGACGC+CGG | + | chr5_3:49173701-49173720 | None:intergenic | 65.0% | |
ACGAGAGCGGGTGGAGGAGG+AGG | + | chr5_3:49167739-49167758 | None:intergenic | 70.0% | |
GGCGGCGCCATAGGCCGCAA+TGG | + | chr5_3:49169031-49169050 | None:intergenic | 75.0% | |
TGCGGCCTATGGCGCCGCCA+TGG | - | chr5_3:49169032-49169051 | Msa0815550:intron | 75.0% | |
GCGCACCATGGCGGCGCCAT+AGG | + | chr5_3:49169040-49169059 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 49167573 | 49174073 | 49167573 | ID=Msa0815550;Name=Msa0815550 |
chr5_3 | mRNA | 49167573 | 49174073 | 49167573 | ID=Msa0815550-mRNA-1;Parent=Msa0815550;Name=Msa0815550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=82|1|1|1|1|1|8|199|355 |
chr5_3 | exon | 49167573 | 49168079 | 49167573 | ID=Msa0815550-mRNA-1:exon:14769;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49168442 | 49168585 | 49168442 | ID=Msa0815550-mRNA-1:exon:14768;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49169083 | 49169226 | 49169083 | ID=Msa0815550-mRNA-1:exon:14767;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49170529 | 49170616 | 49170529 | ID=Msa0815550-mRNA-1:exon:14766;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49171047 | 49171136 | 49171047 | ID=Msa0815550-mRNA-1:exon:14765;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49171431 | 49171497 | 49171431 | ID=Msa0815550-mRNA-1:exon:14764;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49173077 | 49173201 | 49173077 | ID=Msa0815550-mRNA-1:exon:14763;Parent=Msa0815550-mRNA-1 |
chr5_3 | exon | 49173890 | 49174073 | 49173890 | ID=Msa0815550-mRNA-1:exon:14762;Parent=Msa0815550-mRNA-1 |
chr5_3 | five_prime_UTR | 49173992 | 49174073 | 49173992 | ID=Msa0815550-mRNA-1:five_prime_utr;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49173890 | 49173991 | 49173890 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49173077 | 49173201 | 49173077 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49171431 | 49171497 | 49171431 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49171047 | 49171136 | 49171047 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49170529 | 49170616 | 49170529 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49169083 | 49169226 | 49169083 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49168442 | 49168585 | 49168442 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | CDS | 49167772 | 49168079 | 49167772 | ID=Msa0815550-mRNA-1:cds;Parent=Msa0815550-mRNA-1 |
chr5_3 | three_prime_UTR | 49167573 | 49167771 | 49167573 | ID=Msa0815550-mRNA-1:three_prime_utr;Parent=Msa0815550-mRNA-1 |
Gene Sequence |
Protein sequence |