Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855860 | XP_013453272.2 | 99.198 | 499 | 4 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1030 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855860 | sp|O22446|HDA19_ARATH | 79.877 | 487 | 93 | 3 | 6 | 490 | 3 | 486 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855860 | A0A396HQV4 | 99.198 | 499 | 4 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1030 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0123010 | Msa0855860 | 0.815639 | 8.337635e-52 | -8.615850e-47 |
| Msa0855860 | Msa1462860 | 0.816933 | 4.283296e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855860 | MtrunA17_Chr5g0393401 | 99.198 | 499 | 4 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1030 |
| Msa0855860 | MtrunA17_Chr3g0146071 | 78.819 | 491 | 97 | 4 | 7 | 494 | 4 | 490 | 0.0 | 773 |
| Msa0855860 | MtrunA17_Chr3g0117101 | 66.051 | 433 | 139 | 4 | 6 | 430 | 266 | 698 | 0.0 | 617 |
| Msa0855860 | MtrunA17_Chr3g0117101 | 63.492 | 189 | 63 | 3 | 6 | 189 | 11 | 198 | 2.91e-76 | 254 |
| Msa0855860 | MtrunA17_Chr4g0027021 | 60.349 | 401 | 157 | 2 | 19 | 418 | 4 | 403 | 0.0 | 517 |
| Msa0855860 | MtrunA17_Chr4g0061411 | 25.122 | 410 | 271 | 14 | 19 | 412 | 16 | 405 | 7.67e-26 | 111 |
| Msa0855860 | MtrunA17_Chr2g0321941 | 34.615 | 182 | 109 | 3 | 151 | 322 | 154 | 335 | 6.30e-25 | 106 |
| Msa0855860 | MtrunA17_Chr4g0062751 | 24.923 | 325 | 200 | 10 | 39 | 340 | 218 | 521 | 6.40e-21 | 96.3 |
| Msa0855860 | MtrunA17_Chr8g0384361 | 30.769 | 182 | 108 | 5 | 151 | 320 | 16 | 191 | 2.69e-19 | 87.0 |
| Msa0855860 | MtrunA17_Chr1g0151631 | 27.551 | 294 | 183 | 12 | 39 | 321 | 52 | 326 | 5.86e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855860 | AT4G38130.1 | 79.877 | 487 | 93 | 3 | 6 | 490 | 3 | 486 | 0.0 | 776 |
| Msa0855860 | AT4G38130.2 | 81.799 | 467 | 82 | 2 | 6 | 470 | 3 | 468 | 0.0 | 766 |
| Msa0855860 | AT5G63110.1 | 66.828 | 413 | 135 | 1 | 2 | 412 | 1 | 413 | 0.0 | 597 |
| Msa0855860 | AT3G44680.1 | 57.346 | 422 | 168 | 3 | 19 | 428 | 4 | 425 | 0.0 | 519 |
| Msa0855860 | AT5G35600.1 | 54.878 | 410 | 175 | 3 | 11 | 414 | 1 | 406 | 1.05e-162 | 467 |
| Msa0855860 | AT3G44490.1 | 42.949 | 156 | 78 | 2 | 284 | 428 | 2 | 157 | 1.30e-39 | 141 |
| Msa0855860 | AT3G44660.1 | 37.821 | 156 | 70 | 3 | 284 | 428 | 2 | 141 | 1.66e-28 | 110 |
| Msa0855860 | AT5G61060.1 | 28.655 | 342 | 214 | 12 | 19 | 341 | 24 | 354 | 1.50e-27 | 117 |
| Msa0855860 | AT1G08460.1 | 27.914 | 326 | 199 | 8 | 16 | 322 | 18 | 326 | 9.86e-27 | 112 |
| Msa0855860 | AT5G61060.2 | 28.324 | 346 | 214 | 12 | 19 | 341 | 24 | 358 | 2.62e-26 | 113 |
| Msa0855860 | AT5G61070.1 | 24.426 | 479 | 317 | 14 | 2 | 458 | 36 | 491 | 1.02e-25 | 111 |
| Msa0855860 | AT1G08460.2 | 28.364 | 275 | 166 | 7 | 16 | 276 | 18 | 275 | 4.32e-23 | 100 |
| Msa0855860 | AT3G18520.4 | 29.339 | 242 | 161 | 5 | 151 | 382 | 276 | 517 | 5.08e-23 | 102 |
| Msa0855860 | AT3G18520.2 | 29.339 | 242 | 161 | 5 | 151 | 382 | 276 | 517 | 6.77e-23 | 102 |
| Msa0855860 | AT3G18520.1 | 29.167 | 240 | 160 | 5 | 151 | 380 | 276 | 515 | 1.00e-22 | 102 |
| Msa0855860 | AT3G18520.3 | 31.579 | 171 | 112 | 4 | 151 | 316 | 276 | 446 | 2.21e-18 | 88.2 |
| Msa0855860 | AT5G26040.2 | 24.601 | 313 | 208 | 9 | 21 | 322 | 73 | 368 | 6.81e-18 | 85.9 |
| Msa0855860 | AT4G33470.1 | 25.112 | 223 | 152 | 3 | 80 | 300 | 142 | 351 | 1.27e-17 | 85.5 |
Find 160 sgRNAs with CRISPR-Local
Find 450 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGATCTTGCTGTGTTTC+AGG | 0.085056 | 5_4:-50072113 | None:intergenic |
| CAAGAACTCTCGCCCTTTAT+TGG | 0.114993 | 5_4:+50074563 | Msa0855860:CDS |
| ATCTAGGTCTCTTTCCTTTC+AGG | 0.118369 | 5_4:+50070762 | Msa0855860:five_prime_UTR |
| TGATATTGTGCTGGCTATTT+TGG | 0.123222 | 5_4:+50072334 | Msa0855860:CDS |
| TCCATCACCTTTCCCATTAA+TGG | 0.126989 | 5_4:-50073531 | None:intergenic |
| ACCTCTTGAAGCTCAGTATT+TGG | 0.175020 | 5_4:-50074663 | None:intergenic |
| TTCATTGTTTAAGCCATTAA+TGG | 0.195261 | 5_4:+50073518 | Msa0855860:CDS |
| ACTGTTTCATTTCATAAGTT+TGG | 0.196145 | 5_4:+50073387 | Msa0855860:CDS |
| GTAGCTCTTTGTTGGATCTT+TGG | 0.229516 | 5_4:+50076878 | Msa0855860:three_prime_UTR |
| ACATTCTATATAGTTGTTAT+AGG | 0.241137 | 5_4:+50071813 | Msa0855860:intron |
| GCTCTTATATCATCCAATAA+AGG | 0.253207 | 5_4:-50074576 | None:intergenic |
| CATGAGTACTATGAATATTT+TGG | 0.253682 | 5_4:+50074498 | Msa0855860:CDS |
| GACCCTATCAGTTGTGTAAA+AGG | 0.257449 | 5_4:-50073361 | None:intergenic |
| TAGCTCTTTGTTGGATCTTT+GGG | 0.260454 | 5_4:+50076879 | Msa0855860:three_prime_UTR |
| CTGTTTCATTTCATAAGTTT+GGG | 0.260711 | 5_4:+50073388 | Msa0855860:CDS |
| ACAGGAGATGTTCGTGATAT+TGG | 0.286311 | 5_4:+50073426 | Msa0855860:CDS |
| AAGTTTGGGGATTACTTTCC+TGG | 0.286928 | 5_4:+50073402 | Msa0855860:CDS |
| GGTGAGAATGAGATAGAAAA+AGG | 0.309912 | 5_4:+50070683 | Msa0855860:five_prime_UTR |
| TGTCTTCAGGTGACAGGGTC+CGG | 0.312206 | 5_4:+50076487 | Msa0855860:intron |
| TCCTGCTCTTCTTTGATGAA+TGG | 0.323421 | 5_4:-50076535 | None:intergenic |
| GAGGTTGGAAACTATTATTA+TGG | 0.332480 | 5_4:+50071924 | Msa0855860:CDS |
| GGCTTGACCCGTGGATATTA+CGG | 0.339248 | 5_4:-50076591 | None:intergenic |
| AAGAGGAAACTATAATTTAC+AGG | 0.344689 | 5_4:-50076641 | None:intergenic |
| AAAATTGAGTAGCTCTTTGT+TGG | 0.350823 | 5_4:+50076870 | Msa0855860:three_prime_UTR |
| CTCTTATATCATCCAATAAA+GGG | 0.356806 | 5_4:-50074575 | None:intergenic |
| TCTGGAAAATGAAGGGATAT+AGG | 0.359220 | 5_4:+50076715 | Msa0855860:three_prime_UTR |
| TGTGGTGCTGACTCTTTATC+TGG | 0.360549 | 5_4:+50073585 | Msa0855860:CDS |
| CAGTATTTGGAGGTCTCTCT+TGG | 0.363054 | 5_4:-50074650 | None:intergenic |
| TTGTTGGATCTTTGGGATGA+AGG | 0.363362 | 5_4:+50076886 | Msa0855860:three_prime_UTR |
| TCATTGTTTAAGCCATTAAT+GGG | 0.371064 | 5_4:+50073519 | Msa0855860:CDS |
| AATATATAGGCAAGTGAAGT+TGG | 0.371173 | 5_4:-50070604 | None:intergenic |
| TATGTGATATTGCAATAAAT+TGG | 0.375446 | 5_4:+50072255 | Msa0855860:CDS |
| CTGACTCTTTATCTGGAGAT+AGG | 0.378641 | 5_4:+50073592 | Msa0855860:CDS |
| TCTCTCAAACAACAATATAT+AGG | 0.381890 | 5_4:-50070617 | None:intergenic |
| TCACGAACATCTCCTGTTCC+AGG | 0.383235 | 5_4:-50073420 | None:intergenic |
| AGATATTGCTACACCTTTCA+AGG | 0.385430 | 5_4:+50076240 | Msa0855860:CDS |
| TCTGATCTTGCTGTGTTTCA+GGG | 0.386144 | 5_4:-50072112 | None:intergenic |
| GGGGATTACTTTCCTGGAAC+AGG | 0.387475 | 5_4:+50073408 | Msa0855860:CDS |
| GTCTTCAGGTGACAGGGTCC+GGG | 0.395128 | 5_4:+50076488 | Msa0855860:intron |
| TCTATATAGTTGTTATAGGT+TGG | 0.396633 | 5_4:+50071817 | Msa0855860:intron |
| CGAATTCTATGTGGTTTCAT+CGG | 0.406004 | 5_4:-50071957 | None:intergenic |
| CTGGAAAATGAAGGGATATA+GGG | 0.407963 | 5_4:+50076716 | Msa0855860:three_prime_UTR |
| TCTTTATCTGGAGATAGGTT+AGG | 0.408594 | 5_4:+50073597 | Msa0855860:CDS |
| AATGTTCCTCTTCTGTTGCT+CGG | 0.418112 | 5_4:+50073678 | Msa0855860:CDS |
| AAGATGATAGAGATGAAAGA+TGG | 0.418952 | 5_4:+50075467 | Msa0855860:CDS |
| TAATAATAGTTTCCAACCTC+TGG | 0.420126 | 5_4:-50071921 | None:intergenic |
| AGGTTGGAAACTATTATTAT+GGG | 0.421047 | 5_4:+50071925 | Msa0855860:CDS |
| GGAGGGAACTCGCTTCCATC+AGG | 0.422027 | 5_4:+50071858 | Msa0855860:CDS |
| GAAGACTGTCCCGTGTTTGA+TGG | 0.423471 | 5_4:+50072164 | Msa0855860:CDS |
| ATCAGACAGGTGTTGCTCTC+GGG | 0.428071 | 5_4:+50074448 | Msa0855860:intron |
| CTGAATGTTCCCTTGGATGA+TGG | 0.433256 | 5_4:+50073474 | Msa0855860:CDS |
| GATGTTCGTGATATTGGATA+TGG | 0.437390 | 5_4:+50073432 | Msa0855860:CDS |
| TTAAGCCGGATTACAACTAA+TGG | 0.438114 | 5_4:+50076779 | Msa0855860:three_prime_UTR |
| CTCTCTTGGAATGGAACACT+TGG | 0.438183 | 5_4:-50074636 | None:intergenic |
| GAATTCTATGTGGTTTCATC+GGG | 0.439422 | 5_4:-50071956 | None:intergenic |
| TTGCTTCATCTGGAAAATGA+AGG | 0.442731 | 5_4:+50076707 | Msa0855860:three_prime_UTR |
| CACCGCCATTAGTTGTAATC+CGG | 0.446800 | 5_4:-50076784 | None:intergenic |
| TGGAAACTATTATTATGGGC+AGG | 0.455836 | 5_4:+50071929 | Msa0855860:CDS |
| TTATTCACTGAATGTTCCCT+TGG | 0.457739 | 5_4:+50073467 | Msa0855860:CDS |
| AACTTCTTGAGAATTTATCT+AGG | 0.465350 | 5_4:+50074601 | Msa0855860:CDS |
| GATCAGACAGGTGTTGCTCT+CGG | 0.468600 | 5_4:+50074447 | Msa0855860:intron |
| CGTGATATTGGATATGGTAA+AGG | 0.473946 | 5_4:+50073438 | Msa0855860:CDS |
| GAGAGAAGTTGCAAGGATCT+AGG | 0.475855 | 5_4:+50070746 | Msa0855860:five_prime_UTR |
| AGGGTCCGGGGTGGATTCAA+TGG | 0.478359 | 5_4:+50076501 | Msa0855860:CDS |
| AGATGATAGAGATGAAAGAT+GGG | 0.480987 | 5_4:+50075468 | Msa0855860:CDS |
| GAATGACAGACAGCTGTAAG+AGG | 0.483030 | 5_4:-50076658 | None:intergenic |
| ATCCGGCTTAATATTACAGT+TGG | 0.483738 | 5_4:-50076767 | None:intergenic |
| GCAACGTGAAGAGCATAGTC+TGG | 0.485333 | 5_4:-50074522 | None:intergenic |
| TGTTTCAATCTTTCGATCAA+AGG | 0.489442 | 5_4:+50073621 | Msa0855860:CDS |
| AACCTACTGCCGCTAAAGAC+AGG | 0.489469 | 5_4:+50072036 | Msa0855860:CDS |
| AGTTGTTATAGGTTGGATGA+TGG | 0.493242 | 5_4:+50071824 | Msa0855860:intron |
| ATATATAGGCAAGTGAAGTT+GGG | 0.493320 | 5_4:-50070603 | None:intergenic |
| CAGCAATTCTCTTGCACGAA+GGG | 0.494692 | 5_4:+50075588 | Msa0855860:intron |
| CTTCTGTTGCTCGGTGGAGG+TGG | 0.497564 | 5_4:+50073687 | Msa0855860:CDS |
| ATTGCATGTCTTCAGGTGAC+AGG | 0.499344 | 5_4:+50076481 | Msa0855860:intron |
| CCTCTTCTGTTGCTCGGTGG+AGG | 0.504569 | 5_4:+50073684 | Msa0855860:CDS |
| TATTTCTACGATCCAGAGGT+TGG | 0.504725 | 5_4:+50071909 | Msa0855860:CDS |
| TTCTATGTGGTTTCATCGGG+TGG | 0.507556 | 5_4:-50071953 | None:intergenic |
| GTGGATTCAATGGCTGTGGA+TGG | 0.507834 | 5_4:+50076511 | Msa0855860:CDS |
| TTAATGGCTTAAACAATGAA+TGG | 0.508026 | 5_4:-50073515 | None:intergenic |
| TTGCAATATCACATATTCCA+TGG | 0.509410 | 5_4:-50072247 | None:intergenic |
| CGGGGTGGATTCAATGGCTG+TGG | 0.513588 | 5_4:+50076507 | Msa0855860:CDS |
| ACCATTCATCAAAGAAGAGC+AGG | 0.519230 | 5_4:+50076534 | Msa0855860:CDS |
| GTTTAAGCCATTAATGGGAA+AGG | 0.520381 | 5_4:+50073524 | Msa0855860:CDS |
| TTCCAACTGTAATATTAAGC+CGG | 0.521115 | 5_4:+50076765 | Msa0855860:three_prime_UTR |
| ATCAGATTAGACAGTTGAAG+AGG | 0.521631 | 5_4:+50072129 | Msa0855860:CDS |
| CTATGTAAATGATATTGTGC+TGG | 0.523209 | 5_4:+50072325 | Msa0855860:CDS |
| TCTTGAAGCTCAGTATTTGG+AGG | 0.524092 | 5_4:-50074660 | None:intergenic |
| TTTGGAGGTCTCTCTTGGAA+TGG | 0.524293 | 5_4:-50074645 | None:intergenic |
| GCCATTAATGGGAAAGGTGA+TGG | 0.528632 | 5_4:+50073530 | Msa0855860:CDS |
| TGCTTCATCTGGAAAATGAA+GGG | 0.533110 | 5_4:+50076708 | Msa0855860:three_prime_UTR |
| CAACAGAAGAGGAACATTGA+AGG | 0.536582 | 5_4:-50073673 | None:intergenic |
| GCAGAGGTCCCTGTCTTTAG+CGG | 0.541800 | 5_4:-50072045 | None:intergenic |
| TCGATAGACACTAGTTGTCT+AGG | 0.545681 | 5_4:-50076618 | None:intergenic |
| ATCATCAATTCCATCATCCA+AGG | 0.546064 | 5_4:-50073484 | None:intergenic |
| TGGATGATGGAAAGTGTTAG+TGG | 0.549604 | 5_4:+50071837 | Msa0855860:exon |
| GATATTGCAATAAATTGGTC+TGG | 0.559446 | 5_4:+50072260 | Msa0855860:CDS |
| ATCGATATCCACCATGGTGA+TGG | 0.560349 | 5_4:+50073327 | Msa0855860:CDS |
| TCCAAATACTGAGCTTCAAG+AGG | 0.563357 | 5_4:+50074662 | Msa0855860:CDS |
| GAGCATGCAATCTCCTTGAA+AGG | 0.568668 | 5_4:-50076253 | None:intergenic |
| GGCACGGTGTTGGTGTTATG+AGG | 0.568968 | 5_4:+50073728 | Msa0855860:CDS |
| TCTTCAGGTGACAGGGTCCG+GGG | 0.569453 | 5_4:+50076489 | Msa0855860:intron |
| AAAATAGCTTTGCATCTGCA+CGG | 0.569588 | 5_4:+50077037 | Msa0855860:three_prime_UTR |
| GGAAACTATTATTATGGGCA+GGG | 0.569643 | 5_4:+50071930 | Msa0855860:CDS |
| CTGATCTTGCTGTGTTTCAG+GGG | 0.570950 | 5_4:-50072111 | None:intergenic |
| CCACCATGGTGATGGTGTAG+AGG | 0.571069 | 5_4:+50073335 | Msa0855860:CDS |
| AAATAGCTTTGCATCTGCAC+GGG | 0.572340 | 5_4:+50077038 | Msa0855860:three_prime_UTR |
| CAAGGAGATTGCATGCTCCA+AGG | 0.575055 | 5_4:+50076258 | Msa0855860:CDS |
| CAGTTGAAGAGGTTTAATGT+TGG | 0.575078 | 5_4:+50072140 | Msa0855860:CDS |
| TCGCTTCCATCAGGGTCAGA+TGG | 0.576184 | 5_4:+50071867 | Msa0855860:CDS |
| AGACACTAGTTGTCTAGGTG+GGG | 0.578512 | 5_4:-50076613 | None:intergenic |
| CATTGCAATACCACAGCACC+AGG | 0.578846 | 5_4:-50073564 | None:intergenic |
| TAGACACTAGTTGTCTAGGT+GGG | 0.583873 | 5_4:-50076614 | None:intergenic |
| TTCATATTTCTACGATCCAG+AGG | 0.584629 | 5_4:+50071905 | Msa0855860:CDS |
| TTCACACCATCTGACCCTGA+TGG | 0.587776 | 5_4:-50071873 | None:intergenic |
| CCTCCACCGAGCAACAGAAG+AGG | 0.588820 | 5_4:-50073684 | None:intergenic |
| ACCTACTGCCGCTAAAGACA+GGG | 0.592614 | 5_4:+50072037 | Msa0855860:CDS |
| GACACTAGTTGTCTAGGTGG+GGG | 0.597035 | 5_4:-50076612 | None:intergenic |
| GTGTTGAAGCAACCCATAGT+GGG | 0.598870 | 5_4:-50072000 | None:intergenic |
| AGATGAAGCCGTAATATCCA+CGG | 0.598878 | 5_4:+50076583 | Msa0855860:exon |
| CCATGGTGATGGTGTAGAGG+AGG | 0.600370 | 5_4:+50073338 | Msa0855860:CDS |
| TGGGTTGCTTCAACACATGC+AGG | 0.603210 | 5_4:+50072007 | Msa0855860:CDS |
| TAAGAAATGTGGCACGGTGT+TGG | 0.603976 | 5_4:+50073718 | Msa0855860:CDS |
| TTGCATGTCTTCAGGTGACA+GGG | 0.605970 | 5_4:+50076482 | Msa0855860:intron |
| TGGGCAGCGTGTTCTATATG+TGG | 0.608158 | 5_4:+50073302 | Msa0855860:intron |
| TGTGTCATTCGAATTCTATG+TGG | 0.608842 | 5_4:-50071966 | None:intergenic |
| TGGCTATACAATAAGAAATG+TGG | 0.613448 | 5_4:+50073707 | Msa0855860:CDS |
| TCAGGTGACAGGGTCCGGGG+TGG | 0.613743 | 5_4:+50076492 | Msa0855860:intron |
| TCACGTTGCTCCTAGTAACA+TGG | 0.615242 | 5_4:+50074536 | Msa0855860:CDS |
| GTTCCTCTTCTGTTGCTCGG+TGG | 0.616750 | 5_4:+50073681 | Msa0855860:CDS |
| ATAATTAGTAGCAAATAGAG+TGG | 0.617100 | 5_4:-50076990 | None:intergenic |
| GATGAAGCCGTAATATCCAC+GGG | 0.622039 | 5_4:+50076584 | Msa0855860:exon |
| GAGGGAACTCGCTTCCATCA+GGG | 0.622070 | 5_4:+50071859 | Msa0855860:CDS |
| TCCCTGTCTTTAGCGGCAGT+AGG | 0.628266 | 5_4:-50072038 | None:intergenic |
| TGATGGAAAGTGTTAGTGGA+GGG | 0.630916 | 5_4:+50071841 | Msa0855860:CDS |
| TAATTAGTAGCAAATAGAGT+GGG | 0.633209 | 5_4:-50076989 | None:intergenic |
| ATTGCAATAAATTGGTCTGG+TGG | 0.637116 | 5_4:+50072263 | Msa0855860:CDS |
| TCATCAATTCCATCATCCAA+GGG | 0.643226 | 5_4:-50073483 | None:intergenic |
| AGAGTAAAGACCATCAAACA+CGG | 0.645425 | 5_4:-50072174 | None:intergenic |
| TGTTTCATTTCATAAGTTTG+GGG | 0.649344 | 5_4:+50073389 | Msa0855860:CDS |
| TGTGTTGAAGCAACCCATAG+TGG | 0.649660 | 5_4:-50072001 | None:intergenic |
| ACAGCAATTCTCTTGCACGA+AGG | 0.651780 | 5_4:+50075587 | Msa0855860:intron |
| TATTCATAGTACTCATGCTG+AGG | 0.653964 | 5_4:-50074492 | None:intergenic |
| AAGCCACGTAGTCATCAGCA+TGG | 0.657660 | 5_4:-50072073 | None:intergenic |
| CATCAGCATGGAACTTGCAG+AGG | 0.658951 | 5_4:-50072061 | None:intergenic |
| AGCCGGATTACAACTAATGG+CGG | 0.663888 | 5_4:+50076782 | Msa0855860:three_prime_UTR |
| ATTAATGGGAAAGGTGATGG+AGG | 0.665076 | 5_4:+50073533 | Msa0855860:CDS |
| ATAGACACTAGTTGTCTAGG+TGG | 0.669276 | 5_4:-50076615 | None:intergenic |
| CACAGCCATTGAATCCACCC+CGG | 0.674248 | 5_4:-50076506 | None:intergenic |
| CCTCTACACCATCACCATGG+TGG | 0.674261 | 5_4:-50073335 | None:intergenic |
| GAGTAAAGACCATCAAACAC+GGG | 0.681916 | 5_4:-50072173 | None:intergenic |
| TGAAGCTGAGCATAAAGACA+TGG | 0.685361 | 5_4:+50075627 | Msa0855860:CDS |
| ATACAATAAGAAATGTGGCA+CGG | 0.692820 | 5_4:+50073712 | Msa0855860:CDS |
| GGTGCTGTGGTATTGCAATG+TGG | 0.701873 | 5_4:+50073567 | Msa0855860:CDS |
| CCTCCTCTACACCATCACCA+TGG | 0.705263 | 5_4:-50073338 | None:intergenic |
| GGAACTTCTCAAGATACACG+AGG | 0.706793 | 5_4:+50072355 | Msa0855860:CDS |
| GGTGCTCTTAAATTGAACCA+TGG | 0.713674 | 5_4:+50072230 | Msa0855860:CDS |
| GTTCCATGCTGATGACTACG+TGG | 0.713734 | 5_4:+50072070 | Msa0855860:CDS |
| ATGATGGAAAGTGTTAGTGG+AGG | 0.723350 | 5_4:+50071840 | Msa0855860:CDS |
| GTGGACATCGATATCCACCA+TGG | 0.732038 | 5_4:+50073321 | Msa0855860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTACTATCAAAATAA+AGG | - | chr5_4:50071352-50071371 | None:intergenic | 10.0% |
| !!! | TAATTAATACATATTTTAAG+AGG | + | chr5_4:50072708-50072727 | Msa0855860:intron | 10.0% |
| !!! | ATATTTTAATATAAAACATC+GGG | - | chr5_4:50073239-50073258 | None:intergenic | 10.0% |
| !!! | ATTATTTGGTTTATTTATTT+TGG | + | chr5_4:50076047-50076066 | Msa0855860:intron | 10.0% |
| !!! | TTATTTGGTTTATTTATTTT+GGG | + | chr5_4:50076048-50076067 | Msa0855860:intron | 10.0% |
| !!! | ATATATTTTAATATACATCC+AGG | + | chr5_4:50071226-50071245 | Msa0855860:intron | 15.0% |
| !!! | CTTTTATAATTTACAAATTG+AGG | - | chr5_4:50071585-50071604 | None:intergenic | 15.0% |
| !! | CTCAATTTGTAAATTATAAA+AGG | + | chr5_4:50071583-50071602 | Msa0855860:intron | 15.0% |
| !!! | CGTAAAATTTAAACAATTTT+GGG | + | chr5_4:50072731-50072750 | Msa0855860:intron | 15.0% |
| !!! | GTAAAATTTAAACAATTTTG+GGG | + | chr5_4:50072732-50072751 | Msa0855860:intron | 15.0% |
| !! | AATTGATTGAATATCATTTA+TGG | + | chr5_4:50074921-50074940 | Msa0855860:intron | 15.0% |
| !!! | GAATATATATTTTTCTTCAA+TGG | + | chr5_4:50074964-50074983 | Msa0855860:intron | 15.0% |
| !!! | TTTATTTTCATAGTTAGTTT+TGG | + | chr5_4:50075345-50075364 | Msa0855860:intron | 15.0% |
| !! | TTATTTATCTTGATTAAGTT+GGG | - | chr5_4:50076022-50076041 | None:intergenic | 15.0% |
| !! | TTTATTTATCTTGATTAAGT+TGG | - | chr5_4:50076023-50076042 | None:intergenic | 15.0% |
| !! | ACTTAATCAAGATAAATAAA+TGG | + | chr5_4:50076023-50076042 | Msa0855860:intron | 15.0% |
| !!! | TTGTTTTTTTTTTTTTTGTC+AGG | - | chr5_4:50076412-50076431 | None:intergenic | 15.0% |
| !! | AAAACCATACTTAAAAAAAA+CGG | - | chr5_4:50076822-50076841 | None:intergenic | 15.0% |
| !! | ACATTTAACATAGAAAATCT+CGG | - | chr5_4:50070799-50070818 | None:intergenic | 20.0% |
| !!! | AAGTTGCTTTATATATGAAA+TGG | - | chr5_4:50071182-50071201 | None:intergenic | 20.0% |
| !! | TTTACTATCAAAATAAAGGA+TGG | - | chr5_4:50071348-50071367 | None:intergenic | 20.0% |
| !! | TTTGTAAATTATAAAAGGCT+AGG | + | chr5_4:50071588-50071607 | Msa0855860:intron | 20.0% |
| !! | ACATTCTATATAGTTGTTAT+AGG | + | chr5_4:50071813-50071832 | Msa0855860:intron | 20.0% |
| !! | TATGTGATATTGCAATAAAT+TGG | + | chr5_4:50072255-50072274 | Msa0855860:CDS | 20.0% |
| !!! | AATTTGTAATCCATTTTTAG+AGG | + | chr5_4:50072512-50072531 | Msa0855860:intron | 20.0% |
| !!! | GCGTAAAATTTAAACAATTT+TGG | + | chr5_4:50072730-50072749 | Msa0855860:intron | 20.0% |
| !! | TAAAATGTTGACATAAAAGT+AGG | - | chr5_4:50073021-50073040 | None:intergenic | 20.0% |
| !! | AAATTTACCAACAATAAACT+AGG | - | chr5_4:50073776-50073795 | None:intergenic | 20.0% |
| !! | TTACTACAATTACTATTACT+TGG | - | chr5_4:50074147-50074166 | None:intergenic | 20.0% |
| !! | AGTAATAGTAATTGTAGTAA+TGG | + | chr5_4:50074147-50074166 | Msa0855860:intron | 20.0% |
| !! | ACATAGCAATAAATTACAAA+TGG | + | chr5_4:50074237-50074256 | Msa0855860:intron | 20.0% |
| !!! | ATGCAGTATTCTATTTTTTA+AGG | + | chr5_4:50074390-50074409 | Msa0855860:intron | 20.0% |
| !! | TGGTAAAATGAAAATCTTAT+AGG | + | chr5_4:50074984-50075003 | Msa0855860:intron | 20.0% |
| !! | ATGAAAATAAAAACAGAGTA+TGG | - | chr5_4:50075336-50075355 | None:intergenic | 20.0% |
| !! | AATTATTGAACTGAATGAAT+AGG | + | chr5_4:50075382-50075401 | Msa0855860:intron | 20.0% |
| !!! | TATTTATCTTGATTAAGTTG+GGG | - | chr5_4:50076021-50076040 | None:intergenic | 20.0% |
| !! | GATAAATAAATGGCATTATT+TGG | + | chr5_4:50076033-50076052 | Msa0855860:intron | 20.0% |
| !! | CATTTAGTAAAATACAGATA+AGG | - | chr5_4:50076101-50076120 | None:intergenic | 20.0% |
| !!! | ATCTGTATTTTACTAAATGA+TGG | + | chr5_4:50076102-50076121 | Msa0855860:intron | 20.0% |
| !! | TCCGTTAATAAACTATAATT+TGG | + | chr5_4:50076291-50076310 | Msa0855860:intron | 20.0% |
| !! | GCCAAATTATAGTTTATTAA+CGG | - | chr5_4:50076295-50076314 | None:intergenic | 20.0% |
| !! | TTAATAAACTATAATTTGGC+AGG | + | chr5_4:50076295-50076314 | Msa0855860:intron | 20.0% |
| !! | TAATAAACTATAATTTGGCA+GGG | + | chr5_4:50076296-50076315 | Msa0855860:intron | 20.0% |
| ! | TCTCTCAAACAACAATATAT+AGG | - | chr5_4:50070620-50070639 | None:intergenic | 25.0% |
| ! | AAGTAATGAATGATATAGAG+CGG | - | chr5_4:50070921-50070940 | None:intergenic | 25.0% |
| !! | ACTTACTTACTTATTTGTTG+AGG | + | chr5_4:50070937-50070956 | Msa0855860:intron | 25.0% |
| !!! | AACATTTTATTGTTGTTGTC+AGG | - | chr5_4:50071062-50071081 | None:intergenic | 25.0% |
| !! | GGTTAAAATATACGTTTTGA+AGG | - | chr5_4:50071119-50071138 | None:intergenic | 25.0% |
| ! | GGATAAACTAAACTACTTTA+GGG | - | chr5_4:50071140-50071159 | None:intergenic | 25.0% |
| ! | AGGATAAACTAAACTACTTT+AGG | - | chr5_4:50071141-50071160 | None:intergenic | 25.0% |
| !!! | AATAAAGGATGGTTTTGATT+TGG | - | chr5_4:50071337-50071356 | None:intergenic | 25.0% |
| ! | CCAAATACAACAATAATGAT+GGG | + | chr5_4:50071527-50071546 | Msa0855860:intron | 25.0% |
| !! | TGTTTTGTATTCAATTATGC+TGG | + | chr5_4:50071611-50071630 | Msa0855860:intron | 25.0% |
| ! | TTACGAAGAATATAAGACAA+CGG | - | chr5_4:50071699-50071718 | None:intergenic | 25.0% |
| ! | TCTATATAGTTGTTATAGGT+TGG | + | chr5_4:50071817-50071836 | Msa0855860:intron | 25.0% |
| ! | AGGTTGGAAACTATTATTAT+GGG | + | chr5_4:50071925-50071944 | Msa0855860:CDS | 25.0% |
| ! | ATAAATCAACAAGATAATGC+AGG | - | chr5_4:50072398-50072417 | None:intergenic | 25.0% |
| !!! | TGCATTATCTTGTTGATTTA+TGG | + | chr5_4:50072397-50072416 | Msa0855860:intron | 25.0% |
| !! | ACAAATTACTGATGATGAAA+AGG | - | chr5_4:50072499-50072518 | None:intergenic | 25.0% |
| !! | TAAAGGTAAACCTCTAAAAA+TGG | - | chr5_4:50072525-50072544 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAAAATCAGTAA+AGG | - | chr5_4:50072542-50072561 | None:intergenic | 25.0% |
| !! | CTCAGATATAAGTTGAAAAT+AGG | - | chr5_4:50072859-50072878 | None:intergenic | 25.0% |
| ! | AGTTTCCTTCAAAGATATAA+GGG | - | chr5_4:50073090-50073109 | None:intergenic | 25.0% |
| ! | AAGTTTCCTTCAAAGATATA+AGG | - | chr5_4:50073091-50073110 | None:intergenic | 25.0% |
| ! | GTAATGCAAATTTCAATCAA+AGG | - | chr5_4:50073273-50073292 | None:intergenic | 25.0% |
| ! | ACTGTTTCATTTCATAAGTT+TGG | + | chr5_4:50073387-50073406 | Msa0855860:CDS | 25.0% |
| ! | CTGTTTCATTTCATAAGTTT+GGG | + | chr5_4:50073388-50073407 | Msa0855860:CDS | 25.0% |
| ! | TGTTTCATTTCATAAGTTTG+GGG | + | chr5_4:50073389-50073408 | Msa0855860:CDS | 25.0% |
| ! | TTAATGGCTTAAACAATGAA+TGG | - | chr5_4:50073518-50073537 | None:intergenic | 25.0% |
| ! | TTCATTGTTTAAGCCATTAA+TGG | + | chr5_4:50073518-50073537 | Msa0855860:CDS | 25.0% |
| ! | TCATTGTTTAAGCCATTAAT+GGG | + | chr5_4:50073519-50073538 | Msa0855860:CDS | 25.0% |
| ! | TTATAAAACCAATGATTTCC+AGG | - | chr5_4:50073853-50073872 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTATAACCAATAG+AGG | + | chr5_4:50073860-50073879 | Msa0855860:intron | 25.0% |
| ! | CATGACTGTATGTAAATTAT+AGG | - | chr5_4:50074104-50074123 | None:intergenic | 25.0% |
| ! | CTATAATTTACATACAGTCA+TGG | + | chr5_4:50074102-50074121 | Msa0855860:intron | 25.0% |
| ! | GCAAAATCACAACAATAATT+AGG | + | chr5_4:50074169-50074188 | Msa0855860:intron | 25.0% |
| !!! | CTTTGCTGTTTTTTTAACTA+AGG | - | chr5_4:50074215-50074234 | None:intergenic | 25.0% |
| !!! | CAGTATTCTATTTTTTAAGG+AGG | + | chr5_4:50074393-50074412 | Msa0855860:intron | 25.0% |
| ! | CCAATAGTGTTAATATAGAA+CGG | - | chr5_4:50074422-50074441 | None:intergenic | 25.0% |
| !! | CATGAGTACTATGAATATTT+TGG | + | chr5_4:50074498-50074517 | Msa0855860:CDS | 25.0% |
| ! | AACTTCTTGAGAATTTATCT+AGG | + | chr5_4:50074601-50074620 | Msa0855860:CDS | 25.0% |
| !! | TGTTTGAATATCCTTTTACA+TGG | + | chr5_4:50074896-50074915 | Msa0855860:intron | 25.0% |
| !! | CAATCAATTTTCCATGTAAA+AGG | - | chr5_4:50074910-50074929 | None:intergenic | 25.0% |
| ! | AAACATTTAGATCGTTTCTA+TGG | + | chr5_4:50075106-50075125 | Msa0855860:intron | 25.0% |
| ! | TTATTGGGAAAAATCAATCA+TGG | + | chr5_4:50075179-50075198 | Msa0855860:intron | 25.0% |
| !! | CTTGATAATTATACACTGTA+TGG | + | chr5_4:50075264-50075283 | Msa0855860:intron | 25.0% |
| ! | ATAATGTTGAGATGATTGTT+TGG | - | chr5_4:50075699-50075718 | None:intergenic | 25.0% |
| ! | AAGTAATGAGTACAATATAG+TGG | + | chr5_4:50075750-50075769 | Msa0855860:intron | 25.0% |
| ! | AGTAATGAGTACAATATAGT+GGG | + | chr5_4:50075751-50075770 | Msa0855860:intron | 25.0% |
| !!! | TTTAGAATTTTTAGCCATGA+AGG | + | chr5_4:50075821-50075840 | Msa0855860:intron | 25.0% |
| !!! | TGAAACTTGTTTTGATTTTC+AGG | + | chr5_4:50076186-50076205 | Msa0855860:intron | 25.0% |
| ! | AAGAGGAAACTATAATTTAC+AGG | - | chr5_4:50076644-50076663 | None:intergenic | 25.0% |
| !!! | TGAAGCAAAATTTTGAAACA+CGG | - | chr5_4:50076695-50076714 | None:intergenic | 25.0% |
| !! | TTTCAAAATTTTGCTTCATC+TGG | + | chr5_4:50076697-50076716 | Msa0855860:three_prime_UTR | 25.0% |
| !!! | TCTTCCGTTTTTTTTAAGTA+TGG | + | chr5_4:50076815-50076834 | Msa0855860:three_prime_UTR | 25.0% |
| ! | TAATTAGTAGCAAATAGAGT+GGG | - | chr5_4:50076992-50077011 | None:intergenic | 25.0% |
| ! | ATAATTAGTAGCAAATAGAG+TGG | - | chr5_4:50076993-50077012 | None:intergenic | 25.0% |
| ATATATAGGCAAGTGAAGTT+GGG | - | chr5_4:50070606-50070625 | None:intergenic | 30.0% | |
| AATATATAGGCAAGTGAAGT+TGG | - | chr5_4:50070607-50070626 | None:intergenic | 30.0% | |
| GAAAAAGAGTGGAAAGAAAT+CGG | + | chr5_4:50070662-50070681 | Msa0855860:five_prime_UTR | 30.0% | |
| TTAACATAGAAAATCTCGGT+CGG | - | chr5_4:50070795-50070814 | None:intergenic | 30.0% | |
| GGTTAAACTAGCAAATCAAA+AGG | - | chr5_4:50071161-50071180 | None:intergenic | 30.0% | |
| ! | TTTTAATATACATCCAGGTG+CGG | + | chr5_4:50071231-50071250 | Msa0855860:intron | 30.0% |
| ACGGAATTTGAATAGCTAAA+AGG | + | chr5_4:50071300-50071319 | Msa0855860:intron | 30.0% | |
| ATTCGACTATAGTAGTTCAA+CGG | + | chr5_4:50071500-50071519 | Msa0855860:intron | 30.0% | |
| GCCAAATACAACAATAATGA+TGG | + | chr5_4:50071526-50071545 | Msa0855860:intron | 30.0% | |
| CCCATCATTATTGTTGTATT+TGG | - | chr5_4:50071530-50071549 | None:intergenic | 30.0% | |
| TAATAATAGTTTCCAACCTC+TGG | - | chr5_4:50071924-50071943 | None:intergenic | 30.0% | |
| GAGGTTGGAAACTATTATTA+TGG | + | chr5_4:50071924-50071943 | Msa0855860:CDS | 30.0% | |
| TTGCAATATCACATATTCCA+TGG | - | chr5_4:50072250-50072269 | None:intergenic | 30.0% | |
| GATATTGCAATAAATTGGTC+TGG | + | chr5_4:50072260-50072279 | Msa0855860:CDS | 30.0% | |
| CTATGTAAATGATATTGTGC+TGG | + | chr5_4:50072325-50072344 | Msa0855860:CDS | 30.0% | |
| !!! | TGTGCTACAGGATTTTAATT+TGG | + | chr5_4:50072421-50072440 | Msa0855860:intron | 30.0% |
| TTTCTTGACCAACATTTCTA+TGG | + | chr5_4:50072458-50072477 | Msa0855860:intron | 30.0% | |
| CATCACATATTAATGTGCAA+GGG | - | chr5_4:50072589-50072608 | None:intergenic | 30.0% | |
| ATACTTATTAAGCACGATGA+AGG | - | chr5_4:50072793-50072812 | None:intergenic | 30.0% | |
| TTCAACTTATATCTGAGTTG+CGG | + | chr5_4:50072862-50072881 | Msa0855860:intron | 30.0% | |
| AAGCTAATCACACAGTTATT+TGG | + | chr5_4:50072928-50072947 | Msa0855860:intron | 30.0% | |
| ! | AAAAGTAGGACAAGTTCTTT+TGG | - | chr5_4:50073007-50073026 | None:intergenic | 30.0% |
| AGTTTCCCTTATATCTTTGA+AGG | + | chr5_4:50073082-50073101 | Msa0855860:intron | 30.0% | |
| ATTTGCATTACCTTTGTGAT+TGG | + | chr5_4:50073282-50073301 | Msa0855860:intron | 30.0% | |
| TTTGCATTACCTTTGTGATT+GGG | + | chr5_4:50073283-50073302 | Msa0855860:intron | 30.0% | |
| TGTTTCAATCTTTCGATCAA+AGG | + | chr5_4:50073621-50073640 | Msa0855860:CDS | 30.0% | |
| TGGCTATACAATAAGAAATG+TGG | + | chr5_4:50073707-50073726 | Msa0855860:CDS | 30.0% | |
| ATACAATAAGAAATGTGGCA+CGG | + | chr5_4:50073712-50073731 | Msa0855860:CDS | 30.0% | |
| ! | CACTTTTCCTAGTTTATTGT+TGG | + | chr5_4:50073766-50073785 | Msa0855860:intron | 30.0% |
| TGACTTTCCTGGTTTATTTA+CGG | + | chr5_4:50073795-50073814 | Msa0855860:intron | 30.0% | |
| ATGGAATCCAATCAATGAAA+GGG | - | chr5_4:50074028-50074047 | None:intergenic | 30.0% | |
| ACTAGCTGTTGTACTATATA+TGG | - | chr5_4:50074051-50074070 | None:intergenic | 30.0% | |
| TATAGTACAACAGCTAGTAA+TGG | + | chr5_4:50074053-50074072 | Msa0855860:intron | 30.0% | |
| ATCACAACAATAATTAGGAG+TGG | + | chr5_4:50074174-50074193 | Msa0855860:intron | 30.0% | |
| ATAATTAGGAGTGGTATAGT+TGG | + | chr5_4:50074183-50074202 | Msa0855860:intron | 30.0% | |
| ! | AAATGTTTAAAACCACCTGA+AGG | - | chr5_4:50074270-50074289 | None:intergenic | 30.0% |
| CCGTTCTATATTAACACTAT+TGG | + | chr5_4:50074419-50074438 | Msa0855860:intron | 30.0% | |
| !!! | TTCTTGTTTTCCATGTTACT+AGG | - | chr5_4:50074549-50074568 | None:intergenic | 30.0% |
| TATGATCTACTTAAGAGCAA+TGG | - | chr5_4:50074737-50074756 | None:intergenic | 30.0% | |
| TTAAAATCGCTACAGCTTAT+TGG | + | chr5_4:50075163-50075182 | Msa0855860:intron | 30.0% | |
| TAAAATCGCTACAGCTTATT+GGG | + | chr5_4:50075164-50075183 | Msa0855860:intron | 30.0% | |
| AAGATGATAGAGATGAAAGA+TGG | + | chr5_4:50075467-50075486 | Msa0855860:CDS | 30.0% | |
| AGATGATAGAGATGAAAGAT+GGG | + | chr5_4:50075468-50075487 | Msa0855860:CDS | 30.0% | |
| !! | ATTTTGACATGGATGTTGAT+AGG | + | chr5_4:50075497-50075516 | Msa0855860:CDS | 30.0% |
| CATTACTTATTCTAATGCCT+GGG | - | chr5_4:50075738-50075757 | None:intergenic | 30.0% | |
| TCATTACTTATTCTAATGCC+TGG | - | chr5_4:50075739-50075758 | None:intergenic | 30.0% | |
| !!! | TGGTTTATTTATTTTGGGAC+CGG | + | chr5_4:50076053-50076072 | Msa0855860:intron | 30.0% |
| TTTACTAAATGATGGCACAA+TGG | + | chr5_4:50076110-50076129 | Msa0855860:intron | 30.0% | |
| TTTGTATAGTTGCACAATGT+TGG | + | chr5_4:50076133-50076152 | Msa0855860:intron | 30.0% | |
| TTGTATAGTTGCACAATGTT+GGG | + | chr5_4:50076134-50076153 | Msa0855860:intron | 30.0% | |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | - | chr5_4:50076366-50076385 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | - | chr5_4:50076367-50076386 | None:intergenic | 30.0% |
| TGTTAAAATTGCATGTCTTC+AGG | + | chr5_4:50076474-50076493 | Msa0855860:intron | 30.0% | |
| TTCCAACTGTAATATTAAGC+CGG | + | chr5_4:50076765-50076784 | Msa0855860:three_prime_UTR | 30.0% | |
| AAAATTGAGTAGCTCTTTGT+TGG | + | chr5_4:50076870-50076889 | Msa0855860:three_prime_UTR | 30.0% | |
| GGTGAGAATGAGATAGAAAA+AGG | + | chr5_4:50070683-50070702 | Msa0855860:five_prime_UTR | 35.0% | |
| ACCTTAAGTGTGGAGAAATA+GGG | - | chr5_4:50071016-50071035 | None:intergenic | 35.0% | |
| AATAAATAAAACACCGCACC+TGG | - | chr5_4:50071247-50071266 | None:intergenic | 35.0% | |
| AATATGCTCATCCTTGTCAA+CGG | + | chr5_4:50071281-50071300 | Msa0855860:intron | 35.0% | |
| CTATTCAAATTCCGTTGACA+AGG | - | chr5_4:50071295-50071314 | None:intergenic | 35.0% | |
| TGCAAAACACGACAAAAGAA+CGG | - | chr5_4:50071381-50071400 | None:intergenic | 35.0% | |
| CTACACATCAAAACATGTGT+GGG | - | chr5_4:50071421-50071440 | None:intergenic | 35.0% | |
| !! | GAAGCATCTTTGAAGTTGTT+CGG | + | chr5_4:50071464-50071483 | Msa0855860:intron | 35.0% |
| ! | CAGTCAGGGTAATAATTTGT+CGG | + | chr5_4:50071641-50071660 | Msa0855860:intron | 35.0% |
| GTCGGCAACTATAGTTATTA+TGG | + | chr5_4:50071659-50071678 | Msa0855860:intron | 35.0% | |
| ! | AGTTGTTATAGGTTGGATGA+TGG | + | chr5_4:50071824-50071843 | Msa0855860:intron | 35.0% |
| ! | TTCATATTTCTACGATCCAG+AGG | + | chr5_4:50071905-50071924 | Msa0855860:CDS | 35.0% |
| TGGAAACTATTATTATGGGC+AGG | + | chr5_4:50071929-50071948 | Msa0855860:CDS | 35.0% | |
| GGAAACTATTATTATGGGCA+GGG | + | chr5_4:50071930-50071949 | Msa0855860:CDS | 35.0% | |
| GAATTCTATGTGGTTTCATC+GGG | - | chr5_4:50071959-50071978 | None:intergenic | 35.0% | |
| CGAATTCTATGTGGTTTCAT+CGG | - | chr5_4:50071960-50071979 | None:intergenic | 35.0% | |
| ! | TGTGTCATTCGAATTCTATG+TGG | - | chr5_4:50071969-50071988 | None:intergenic | 35.0% |
| ATCAGATTAGACAGTTGAAG+AGG | + | chr5_4:50072129-50072148 | Msa0855860:CDS | 35.0% | |
| CAGTTGAAGAGGTTTAATGT+TGG | + | chr5_4:50072140-50072159 | Msa0855860:CDS | 35.0% | |
| AGAGTAAAGACCATCAAACA+CGG | - | chr5_4:50072177-50072196 | None:intergenic | 35.0% | |
| ! | TCTTTTTGTCAGACATATGC+AGG | + | chr5_4:50072194-50072213 | Msa0855860:CDS | 35.0% |
| ! | CTTTTTGTCAGACATATGCA+GGG | + | chr5_4:50072195-50072214 | Msa0855860:CDS | 35.0% |
| ! | TTTTTGTCAGACATATGCAG+GGG | + | chr5_4:50072196-50072215 | Msa0855860:CDS | 35.0% |
| ! | ATTGCAATAAATTGGTCTGG+TGG | + | chr5_4:50072263-50072282 | Msa0855860:CDS | 35.0% |
| !!! | TGATATTGTGCTGGCTATTT+TGG | + | chr5_4:50072334-50072353 | Msa0855860:CDS | 35.0% |
| TCAACAAGATAATGCAGGAA+AGG | - | chr5_4:50072393-50072412 | None:intergenic | 35.0% | |
| TTGATTTATGGTTGTGCTAC+AGG | + | chr5_4:50072409-50072428 | Msa0855860:intron | 35.0% | |
| GCATCACATATTAATGTGCA+AGG | - | chr5_4:50072590-50072609 | None:intergenic | 35.0% | |
| GAAAATAGGTAGCAATTACG+CGG | - | chr5_4:50072845-50072864 | None:intergenic | 35.0% | |
| TCAACTTATATCTGAGTTGC+GGG | + | chr5_4:50072863-50072882 | Msa0855860:intron | 35.0% | |
| GTTTCTTGAAATGAGCAACA+TGG | - | chr5_4:50072961-50072980 | None:intergenic | 35.0% | |
| ! | TATTTTTCCCTTGTTGCTGA+TGG | + | chr5_4:50073047-50073066 | Msa0855860:intron | 35.0% |
| !! | TTGACGATTAGTCTTTACTG+TGG | + | chr5_4:50073145-50073164 | Msa0855860:intron | 35.0% |
| GATGTTCGTGATATTGGATA+TGG | + | chr5_4:50073432-50073451 | Msa0855860:CDS | 35.0% | |
| CGTGATATTGGATATGGTAA+AGG | + | chr5_4:50073438-50073457 | Msa0855860:CDS | 35.0% | |
| TTATTCACTGAATGTTCCCT+TGG | + | chr5_4:50073467-50073486 | Msa0855860:CDS | 35.0% | |
| TCATCAATTCCATCATCCAA+GGG | - | chr5_4:50073486-50073505 | None:intergenic | 35.0% | |
| ATCATCAATTCCATCATCCA+AGG | - | chr5_4:50073487-50073506 | None:intergenic | 35.0% | |
| GTTTAAGCCATTAATGGGAA+AGG | + | chr5_4:50073524-50073543 | Msa0855860:CDS | 35.0% | |
| TCTTTATCTGGAGATAGGTT+AGG | + | chr5_4:50073597-50073616 | Msa0855860:CDS | 35.0% | |
| ! | GTTGGTAAATTTGACTTTCC+TGG | + | chr5_4:50073784-50073803 | Msa0855860:intron | 35.0% |
| TATTGATGCCTGGAAATCAT+TGG | + | chr5_4:50073842-50073861 | Msa0855860:intron | 35.0% | |
| ATAGTCAGTTGTGAGAATCA+TGG | - | chr5_4:50073934-50073953 | None:intergenic | 35.0% | |
| TTCTCACAACTGACTATTAG+CGG | + | chr5_4:50073937-50073956 | Msa0855860:intron | 35.0% | |
| GATGGAATCCAATCAATGAA+AGG | - | chr5_4:50074029-50074048 | None:intergenic | 35.0% | |
| GCTGTTGTACTATATATGGA+TGG | - | chr5_4:50074047-50074066 | None:intergenic | 35.0% | |
| ! | TTACTTGGTGAACATATGCT+AGG | - | chr5_4:50074132-50074151 | None:intergenic | 35.0% |
| TATTCATAGTACTCATGCTG+AGG | - | chr5_4:50074495-50074514 | None:intergenic | 35.0% | |
| TACTTTAGCGAGTATAAGGT+TGG | - | chr5_4:50074844-50074863 | None:intergenic | 35.0% | |
| GATCTACTTTAGCGAGTATA+AGG | - | chr5_4:50074848-50074867 | None:intergenic | 35.0% | |
| GGATTAACAAAACGCAGTAA+TGG | - | chr5_4:50075029-50075048 | None:intergenic | 35.0% | |
| !! | TTACTGCGTTTTGTTAATCC+AGG | + | chr5_4:50075029-50075048 | Msa0855860:intron | 35.0% |
| CAAATGCAACTTTGACAGTT+TGG | - | chr5_4:50075086-50075105 | None:intergenic | 35.0% | |
| GCATTCCATAAACATGTATG+AGG | + | chr5_4:50075220-50075239 | Msa0855860:intron | 35.0% | |
| GAAAGACAGACTATCAAGAT+GGG | - | chr5_4:50075543-50075562 | None:intergenic | 35.0% | |
| TGAAAGACAGACTATCAAGA+TGG | - | chr5_4:50075544-50075563 | None:intergenic | 35.0% | |
| ! | TCTTGATAGTCTGTCTTTCA+AGG | + | chr5_4:50075544-50075563 | Msa0855860:intron | 35.0% |
| CAAAGCAAAGAAAACAGGTT+AGG | - | chr5_4:50075658-50075677 | None:intergenic | 35.0% | |
| TGTTGCAAAGCAAAGAAAAC+AGG | - | chr5_4:50075663-50075682 | None:intergenic | 35.0% | |
| ! | ATGAGTACAATATAGTGGGA+TGG | + | chr5_4:50075755-50075774 | Msa0855860:intron | 35.0% |
| TTCAACTTTGTCAGCCAAAA+GGG | - | chr5_4:50076170-50076189 | None:intergenic | 35.0% | |
| TTTCAACTTTGTCAGCCAAA+AGG | - | chr5_4:50076171-50076190 | None:intergenic | 35.0% | |
| AGATATTGCTACACCTTTCA+AGG | + | chr5_4:50076240-50076259 | Msa0855860:CDS | 35.0% | |
| ! | TAACGGACAAAACATTACCT+TGG | - | chr5_4:50076278-50076297 | None:intergenic | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | - | chr5_4:50076368-50076387 | None:intergenic | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | + | chr5_4:50076365-50076384 | Msa0855860:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | - | chr5_4:50076379-50076398 | None:intergenic | 35.0% |
| TTGCTTCATCTGGAAAATGA+AGG | + | chr5_4:50076707-50076726 | Msa0855860:three_prime_UTR | 35.0% | |
| TGCTTCATCTGGAAAATGAA+GGG | + | chr5_4:50076708-50076727 | Msa0855860:three_prime_UTR | 35.0% | |
| TCTGGAAAATGAAGGGATAT+AGG | + | chr5_4:50076715-50076734 | Msa0855860:three_prime_UTR | 35.0% | |
| CTGGAAAATGAAGGGATATA+GGG | + | chr5_4:50076716-50076735 | Msa0855860:three_prime_UTR | 35.0% | |
| ATCCGGCTTAATATTACAGT+TGG | - | chr5_4:50076770-50076789 | None:intergenic | 35.0% | |
| TTAAGCCGGATTACAACTAA+TGG | + | chr5_4:50076779-50076798 | Msa0855860:three_prime_UTR | 35.0% | |
| TAGCTCTTTGTTGGATCTTT+GGG | + | chr5_4:50076879-50076898 | Msa0855860:three_prime_UTR | 35.0% | |
| ! | TTTTCACGAGAAACTCAAGA+TGG | - | chr5_4:50076921-50076940 | None:intergenic | 35.0% |
| ! | AAAATAGCTTTGCATCTGCA+CGG | + | chr5_4:50077037-50077056 | Msa0855860:three_prime_UTR | 35.0% |
| ATCTAGGTCTCTTTCCTTTC+AGG | + | chr5_4:50070762-50070781 | Msa0855860:five_prime_UTR | 40.0% | |
| GTGGAGAAATAGGGAATCTA+TGG | - | chr5_4:50071007-50071026 | None:intergenic | 40.0% | |
| ! | TCCCTATTTCTCCACACTTA+AGG | + | chr5_4:50071012-50071031 | Msa0855860:intron | 40.0% |
| CACCTTAAGTGTGGAGAAAT+AGG | - | chr5_4:50071017-50071036 | None:intergenic | 40.0% | |
| TTGTTGTCAGGTATCCAAGT+GGG | - | chr5_4:50071050-50071069 | None:intergenic | 40.0% | |
| AAACACGACAAAAGAACGGA+TGG | - | chr5_4:50071377-50071396 | None:intergenic | 40.0% | |
| GCTACACATCAAAACATGTG+TGG | - | chr5_4:50071422-50071441 | None:intergenic | 40.0% | |
| TTCAAAGATGCTTCAGAGCT+CGG | - | chr5_4:50071458-50071477 | None:intergenic | 40.0% | |
| CGAAGAATATAAGACAACGG+TGG | - | chr5_4:50071696-50071715 | None:intergenic | 40.0% | |
| !! | TGGATGATGGAAAGTGTTAG+TGG | + | chr5_4:50071837-50071856 | Msa0855860:exon | 40.0% |
| !! | ATGATGGAAAGTGTTAGTGG+AGG | + | chr5_4:50071840-50071859 | Msa0855860:CDS | 40.0% |
| !! | TGATGGAAAGTGTTAGTGGA+GGG | + | chr5_4:50071841-50071860 | Msa0855860:CDS | 40.0% |
| ! | TATTTCTACGATCCAGAGGT+TGG | + | chr5_4:50071909-50071928 | Msa0855860:CDS | 40.0% |
| !!! | ATGACTACGTGGCTTTTTTG+AGG | + | chr5_4:50072081-50072100 | Msa0855860:CDS | 40.0% |
| !!! | TGACTACGTGGCTTTTTTGA+GGG | + | chr5_4:50072082-50072101 | Msa0855860:CDS | 40.0% |
| ! | TCTGATCTTGCTGTGTTTCA+GGG | - | chr5_4:50072115-50072134 | None:intergenic | 40.0% |
| ! | ATCTGATCTTGCTGTGTTTC+AGG | - | chr5_4:50072116-50072135 | None:intergenic | 40.0% |
| GAGTAAAGACCATCAAACAC+GGG | - | chr5_4:50072176-50072195 | None:intergenic | 40.0% | |
| ! | TTTTGTCAGACATATGCAGG+GGG | + | chr5_4:50072197-50072216 | Msa0855860:CDS | 40.0% |
| GGTGCTCTTAAATTGAACCA+TGG | + | chr5_4:50072230-50072249 | Msa0855860:CDS | 40.0% | |
| CGATATGTCGTTCGCATAAA+TGG | + | chr5_4:50072629-50072648 | Msa0855860:intron | 40.0% | |
| GGGGTTCTCATAATAGATGA+AGG | + | chr5_4:50072751-50072770 | Msa0855860:intron | 40.0% | |
| CGCGGCAAAAAATAAACTAC+TGG | - | chr5_4:50072827-50072846 | None:intergenic | 40.0% | |
| TCAAATGCCATCAGCAACAA+GGG | - | chr5_4:50073057-50073076 | None:intergenic | 40.0% | |
| TTCAAATGCCATCAGCAACA+AGG | - | chr5_4:50073058-50073077 | None:intergenic | 40.0% | |
| ! | TTTACTGTGGCTGGTTACTT+TGG | + | chr5_4:50073158-50073177 | Msa0855860:intron | 40.0% |
| ! | AGGCCTTTTACACAACTGAT+AGG | + | chr5_4:50073358-50073377 | Msa0855860:CDS | 40.0% |
| ! | GGCCTTTTACACAACTGATA+GGG | + | chr5_4:50073359-50073378 | Msa0855860:CDS | 40.0% |
| GACCCTATCAGTTGTGTAAA+AGG | - | chr5_4:50073364-50073383 | None:intergenic | 40.0% | |
| AAGTTTGGGGATTACTTTCC+TGG | + | chr5_4:50073402-50073421 | Msa0855860:CDS | 40.0% | |
| ACAGGAGATGTTCGTGATAT+TGG | + | chr5_4:50073426-50073445 | Msa0855860:CDS | 40.0% | |
| TCCATCACCTTTCCCATTAA+TGG | - | chr5_4:50073534-50073553 | None:intergenic | 40.0% | |
| ! | ATTAATGGGAAAGGTGATGG+AGG | + | chr5_4:50073533-50073552 | Msa0855860:CDS | 40.0% |
| CTGACTCTTTATCTGGAGAT+AGG | + | chr5_4:50073592-50073611 | Msa0855860:CDS | 40.0% | |
| CAACAGAAGAGGAACATTGA+AGG | - | chr5_4:50073676-50073695 | None:intergenic | 40.0% | |
| AATGTTCCTCTTCTGTTGCT+CGG | + | chr5_4:50073678-50073697 | Msa0855860:CDS | 40.0% | |
| ! | ATACTCACTGTTTGGGATGA+AGG | - | chr5_4:50073825-50073844 | None:intergenic | 40.0% |
| GGCATCAATACTCACTGTTT+GGG | - | chr5_4:50073832-50073851 | None:intergenic | 40.0% | |
| AGGCATCAATACTCACTGTT+TGG | - | chr5_4:50073833-50073852 | None:intergenic | 40.0% | |
| !! | AAACAGTGAGTATTGATGCC+TGG | + | chr5_4:50073832-50073851 | Msa0855860:intron | 40.0% |
| CAACATTTCAGAGCCTCTAT+TGG | - | chr5_4:50073876-50073895 | None:intergenic | 40.0% | |
| TCTCACAACTGACTATTAGC+GGG | + | chr5_4:50073938-50073957 | Msa0855860:intron | 40.0% | |
| GCGGGAGATGTTAAATTCTA+CGG | + | chr5_4:50073956-50073975 | Msa0855860:intron | 40.0% | |
| GGCAATGGAACATAAACTGA+TGG | - | chr5_4:50074007-50074026 | None:intergenic | 40.0% | |
| TCCATTGCCCTTTCATTGAT+TGG | + | chr5_4:50074018-50074037 | Msa0855860:intron | 40.0% | |
| TCCAATCAATGAAAGGGCAA+TGG | - | chr5_4:50074022-50074041 | None:intergenic | 40.0% | |
| !! | ACAAATGGACTAATGCCTTC+AGG | + | chr5_4:50074252-50074271 | Msa0855860:intron | 40.0% |
| CTATTGGATGTTGATCAGAC+AGG | + | chr5_4:50074435-50074454 | Msa0855860:intron | 40.0% | |
| TCTTGAAGCTCAGTATTTGG+AGG | - | chr5_4:50074663-50074682 | None:intergenic | 40.0% | |
| TCCAAATACTGAGCTTCAAG+AGG | + | chr5_4:50074662-50074681 | Msa0855860:CDS | 40.0% | |
| ACCTCTTGAAGCTCAGTATT+TGG | - | chr5_4:50074666-50074685 | None:intergenic | 40.0% | |
| AGTTAGGGATGGATATACGA+AGG | - | chr5_4:50074801-50074820 | None:intergenic | 40.0% | |
| !! | GTTTTGTTAATCCAGGTGGA+TGG | + | chr5_4:50075036-50075055 | Msa0855860:intron | 40.0% |
| GTTTATGGAATGCCCATGTT+TGG | - | chr5_4:50075213-50075232 | None:intergenic | 40.0% | |
| GCACTCCTCATACATGTTTA+TGG | - | chr5_4:50075228-50075247 | None:intergenic | 40.0% | |
| !! | ATGGGATCGTGATTTTGACA+TGG | + | chr5_4:50075486-50075505 | Msa0855860:CDS | 40.0% |
| GATAGGTATTCTCGTGTTTC+TGG | + | chr5_4:50075514-50075533 | Msa0855860:intron | 40.0% | |
| TGAAGCTGAGCATAAAGACA+TGG | + | chr5_4:50075627-50075646 | Msa0855860:CDS | 40.0% | |
| CATCTCAACATTATGACCTC+AGG | + | chr5_4:50075705-50075724 | Msa0855860:intron | 40.0% | |
| TTGATTAAGAGTCCAACCGA+GGG | - | chr5_4:50075856-50075875 | None:intergenic | 40.0% | |
| TTTGATTAAGAGTCCAACCG+AGG | - | chr5_4:50075857-50075876 | None:intergenic | 40.0% | |
| ! | GTTCTGTTTTCCACTAGGTA+GGG | - | chr5_4:50075975-50075994 | None:intergenic | 40.0% |
| ! | AGTTCTGTTTTCCACTAGGT+AGG | - | chr5_4:50075976-50075995 | None:intergenic | 40.0% |
| TACCTAGTGGAAAACAGAAC+TGG | + | chr5_4:50075975-50075994 | Msa0855860:intron | 40.0% | |
| ! | AACCAGTTCTGTTTTCCACT+AGG | - | chr5_4:50075980-50075999 | None:intergenic | 40.0% |
| ! | TGGGAAGAATTGATCCCTTT+TGG | + | chr5_4:50076153-50076172 | Msa0855860:intron | 40.0% |
| GACATGCATTGTGATATGCA+GGG | + | chr5_4:50076318-50076337 | Msa0855860:intron | 40.0% | |
| ACATGCATTGTGATATGCAG+GGG | + | chr5_4:50076319-50076338 | Msa0855860:intron | 40.0% | |
| AAAGGTGAATTCTAGCCACT+AGG | + | chr5_4:50076383-50076402 | Msa0855860:intron | 40.0% | |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | - | chr5_4:50076401-50076420 | None:intergenic | 40.0% |
| ATAAGACCTGTCTAGTCTAG+TGG | + | chr5_4:50076451-50076470 | Msa0855860:intron | 40.0% | |
| TTAACACCACTAGACTAGAC+AGG | - | chr5_4:50076460-50076479 | None:intergenic | 40.0% | |
| ACCATTCATCAAAGAAGAGC+AGG | + | chr5_4:50076534-50076553 | Msa0855860:CDS | 40.0% | |
| TCCTGCTCTTCTTTGATGAA+TGG | - | chr5_4:50076538-50076557 | None:intergenic | 40.0% | |
| AGATGAAGCCGTAATATCCA+CGG | + | chr5_4:50076583-50076602 | Msa0855860:exon | 40.0% | |
| TAGACACTAGTTGTCTAGGT+GGG | - | chr5_4:50076617-50076636 | None:intergenic | 40.0% | |
| ATAGACACTAGTTGTCTAGG+TGG | - | chr5_4:50076618-50076637 | None:intergenic | 40.0% | |
| TCGATAGACACTAGTTGTCT+AGG | - | chr5_4:50076621-50076640 | None:intergenic | 40.0% | |
| GTAGCTCTTTGTTGGATCTT+TGG | + | chr5_4:50076878-50076897 | Msa0855860:three_prime_UTR | 40.0% | |
| !! | TTGTTGGATCTTTGGGATGA+AGG | + | chr5_4:50076886-50076905 | Msa0855860:three_prime_UTR | 40.0% |
| ! | AAATAGCTTTGCATCTGCAC+GGG | + | chr5_4:50077038-50077057 | Msa0855860:three_prime_UTR | 40.0% |
| ! | CCACTCTTTTTCTCGAACGA+GGG | - | chr5_4:50070654-50070673 | None:intergenic | 45.0% |
| ! | TCCACTCTTTTTCTCGAACG+AGG | - | chr5_4:50070655-50070674 | None:intergenic | 45.0% |
| CAACTTCTCTCTCTCTCTCT+CGG | - | chr5_4:50070737-50070756 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAAGTTGCA+AGG | + | chr5_4:50070739-50070758 | Msa0855860:five_prime_UTR | 45.0% | |
| GAGAGAAGTTGCAAGGATCT+AGG | + | chr5_4:50070746-50070765 | Msa0855860:five_prime_UTR | 45.0% | |
| CATAGAAAATCTCGGTCGGT+CGG | - | chr5_4:50070791-50070810 | None:intergenic | 45.0% | |
| TCCCTCAAATCAGAACTGCA+AGG | + | chr5_4:50070980-50070999 | Msa0855860:intron | 45.0% | |
| ! | CCCTTGCAGTTCTGATTTGA+GGG | - | chr5_4:50070984-50071003 | None:intergenic | 45.0% |
| CCCTCAAATCAGAACTGCAA+GGG | + | chr5_4:50070981-50071000 | Msa0855860:intron | 45.0% | |
| GTTGTTGTCAGGTATCCAAG+TGG | - | chr5_4:50071051-50071070 | None:intergenic | 45.0% | |
| ! | TATGCTGGTGTTAAGCAGTC+AGG | + | chr5_4:50071626-50071645 | Msa0855860:intron | 45.0% |
| ! | ATGCTGGTGTTAAGCAGTCA+GGG | + | chr5_4:50071627-50071646 | Msa0855860:intron | 45.0% |
| TTCTATGTGGTTTCATCGGG+TGG | - | chr5_4:50071956-50071975 | None:intergenic | 45.0% | |
| ! | ACGCTCTTTTAGCCCACTAT+GGG | + | chr5_4:50071988-50072007 | Msa0855860:CDS | 45.0% |
| GTGTTGAAGCAACCCATAGT+GGG | - | chr5_4:50072003-50072022 | None:intergenic | 45.0% | |
| TGTGTTGAAGCAACCCATAG+TGG | - | chr5_4:50072004-50072023 | None:intergenic | 45.0% | |
| !!! | GACTACGTGGCTTTTTTGAG+GGG | + | chr5_4:50072083-50072102 | Msa0855860:CDS | 45.0% |
| ! | CTGATCTTGCTGTGTTTCAG+GGG | - | chr5_4:50072114-50072133 | None:intergenic | 45.0% |
| GGAACTTCTCAAGATACACG+AGG | + | chr5_4:50072355-50072374 | Msa0855860:CDS | 45.0% | |
| CGTGCAAGCCATAGAAATGT+TGG | - | chr5_4:50072469-50072488 | None:intergenic | 45.0% | |
| !! | CGATTAGTCTTTACTGTGGC+TGG | + | chr5_4:50073149-50073168 | Msa0855860:intron | 45.0% |
| ATCGATATCCACCATGGTGA+TGG | + | chr5_4:50073327-50073346 | Msa0855860:CDS | 45.0% | |
| CTGAATGTTCCCTTGGATGA+TGG | + | chr5_4:50073474-50073493 | Msa0855860:CDS | 45.0% | |
| GCCATTAATGGGAAAGGTGA+TGG | + | chr5_4:50073530-50073549 | Msa0855860:CDS | 45.0% | |
| !! | GTGATGGAGGTTTTTAGACC+TGG | + | chr5_4:50073546-50073565 | Msa0855860:CDS | 45.0% |
| !! | TGTGGTGCTGACTCTTTATC+TGG | + | chr5_4:50073585-50073604 | Msa0855860:CDS | 45.0% |
| TAAGAAATGTGGCACGGTGT+TGG | + | chr5_4:50073718-50073737 | Msa0855860:CDS | 45.0% | |
| AGGTGGTCCGTAAATAAACC+AGG | - | chr5_4:50073805-50073824 | None:intergenic | 45.0% | |
| !! | AATGGACTAATGCCTTCAGG+TGG | + | chr5_4:50074255-50074274 | Msa0855860:intron | 45.0% |
| TCACGTTGCTCCTAGTAACA+TGG | + | chr5_4:50074536-50074555 | Msa0855860:CDS | 45.0% | |
| CAAGAACTCTCGCCCTTTAT+TGG | + | chr5_4:50074563-50074582 | Msa0855860:CDS | 45.0% | |
| CTCTCTTGGAATGGAACACT+TGG | - | chr5_4:50074639-50074658 | None:intergenic | 45.0% | |
| TTTGGAGGTCTCTCTTGGAA+TGG | - | chr5_4:50074648-50074667 | None:intergenic | 45.0% | |
| CAGTATTTGGAGGTCTCTCT+TGG | - | chr5_4:50074653-50074672 | None:intergenic | 45.0% | |
| ! | TAGCGAGTATAAGGTTGGCT+CGG | - | chr5_4:50074839-50074858 | None:intergenic | 45.0% |
| !! | GGTGCAAACTTTGCTGTTCA+TGG | + | chr5_4:50074942-50074961 | Msa0855860:intron | 45.0% |
| !! | CTGCGTTTTGTTAATCCAGG+TGG | + | chr5_4:50075032-50075051 | Msa0855860:intron | 45.0% |
| TTAAACGTGTTCCATCCACC+TGG | - | chr5_4:50075050-50075069 | None:intergenic | 45.0% | |
| ATGGCATGCAGACCAAACAT+GGG | + | chr5_4:50075198-50075217 | Msa0855860:intron | 45.0% | |
| ACAGCAATTCTCTTGCACGA+AGG | + | chr5_4:50075587-50075606 | Msa0855860:intron | 45.0% | |
| CAGCAATTCTCTTGCACGAA+GGG | + | chr5_4:50075588-50075607 | Msa0855860:intron | 45.0% | |
| ACTGCAGCAACAAAGCTATC+AGG | - | chr5_4:50075802-50075821 | None:intergenic | 45.0% | |
| !! | ATGAAGGATTAGTCCACCCT+CGG | + | chr5_4:50075837-50075856 | Msa0855860:intron | 45.0% |
| CAAGAAACAGAACTTGCGTC+CGG | - | chr5_4:50076075-50076094 | None:intergenic | 45.0% | |
| GAGCATGCAATCTCCTTGAA+AGG | - | chr5_4:50076256-50076275 | None:intergenic | 45.0% | |
| GGACATGCATTGTGATATGC+AGG | + | chr5_4:50076317-50076336 | Msa0855860:intron | 45.0% | |
| ATTGCATGTCTTCAGGTGAC+AGG | + | chr5_4:50076481-50076500 | Msa0855860:intron | 45.0% | |
| TTGCATGTCTTCAGGTGACA+GGG | + | chr5_4:50076482-50076501 | Msa0855860:intron | 45.0% | |
| GATGAAGCCGTAATATCCAC+GGG | + | chr5_4:50076584-50076603 | Msa0855860:exon | 45.0% | |
| AGACACTAGTTGTCTAGGTG+GGG | - | chr5_4:50076616-50076635 | None:intergenic | 45.0% | |
| GAATGACAGACAGCTGTAAG+AGG | - | chr5_4:50076661-50076680 | None:intergenic | 45.0% | |
| AGCCGGATTACAACTAATGG+CGG | + | chr5_4:50076782-50076801 | Msa0855860:three_prime_UTR | 45.0% | |
| CACCGCCATTAGTTGTAATC+CGG | - | chr5_4:50076787-50076806 | None:intergenic | 45.0% | |
| !!! | AATATTTTAATATAAAACAT+CGG | - | chr5_4:50073240-50073259 | None:intergenic | 5.0% |
| !!! | TTAATATATTAGATTTTAAA+AGG | - | chr5_4:50074299-50074318 | None:intergenic | 5.0% |
| !! | ATATATTAATCTAATATATT+AGG | + | chr5_4:50074310-50074329 | Msa0855860:intron | 5.0% |
| CCCTCGTTCGAGAAAAAGAG+TGG | + | chr5_4:50070651-50070670 | Msa0855860:five_prime_UTR | 50.0% | |
| ! | GCCCTTGCAGTTCTGATTTG+AGG | - | chr5_4:50070985-50071004 | None:intergenic | 50.0% |
| GGACTCACACACCTTAAGTG+TGG | - | chr5_4:50071026-50071045 | None:intergenic | 50.0% | |
| TTGTCAGGTATCCAAGTGGG+CGG | - | chr5_4:50071047-50071066 | None:intergenic | 50.0% | |
| TTCACACCATCTGACCCTGA+TGG | - | chr5_4:50071876-50071895 | None:intergenic | 50.0% | |
| ! | CACGCTCTTTTAGCCCACTA+TGG | + | chr5_4:50071987-50072006 | Msa0855860:CDS | 50.0% |
| TGGGTTGCTTCAACACATGC+AGG | + | chr5_4:50072007-50072026 | Msa0855860:CDS | 50.0% | |
| AACCTACTGCCGCTAAAGAC+AGG | + | chr5_4:50072036-50072055 | Msa0855860:CDS | 50.0% | |
| ACCTACTGCCGCTAAAGACA+GGG | + | chr5_4:50072037-50072056 | Msa0855860:CDS | 50.0% | |
| CATCAGCATGGAACTTGCAG+AGG | - | chr5_4:50072064-50072083 | None:intergenic | 50.0% | |
| GTTCCATGCTGATGACTACG+TGG | + | chr5_4:50072070-50072089 | Msa0855860:CDS | 50.0% | |
| AAGCCACGTAGTCATCAGCA+TGG | - | chr5_4:50072076-50072095 | None:intergenic | 50.0% | |
| GAAGACTGTCCCGTGTTTGA+TGG | + | chr5_4:50072164-50072183 | Msa0855860:CDS | 50.0% | |
| ACATATGCAGGGGGTTCTGT+TGG | + | chr5_4:50072206-50072225 | Msa0855860:CDS | 50.0% | |
| ! | ACATCACGCCAAAAAGTGCG+AGG | + | chr5_4:50072289-50072308 | Msa0855860:CDS | 50.0% |
| ! | CCAAAAAGTGCGAGGCTTCT+GGG | + | chr5_4:50072297-50072316 | Msa0855860:CDS | 50.0% |
| ! | TGAGTTGCGGGTTTGTTCTG+TGG | + | chr5_4:50072875-50072894 | Msa0855860:intron | 50.0% |
| ! | GAGTTGCGGGTTTGTTCTGT+GGG | + | chr5_4:50072876-50072895 | Msa0855860:intron | 50.0% |
| AACACGCTGCCCAATCACAA+AGG | - | chr5_4:50073295-50073314 | None:intergenic | 50.0% | |
| TGGGCAGCGTGTTCTATATG+TGG | + | chr5_4:50073302-50073321 | Msa0855860:intron | 50.0% | |
| GTGGACATCGATATCCACCA+TGG | + | chr5_4:50073321-50073340 | Msa0855860:CDS | 50.0% | |
| GGGGATTACTTTCCTGGAAC+AGG | + | chr5_4:50073408-50073427 | Msa0855860:CDS | 50.0% | |
| TCACGAACATCTCCTGTTCC+AGG | - | chr5_4:50073423-50073442 | None:intergenic | 50.0% | |
| !! | GGTTTTTAGACCTGGTGCTG+TGG | + | chr5_4:50073554-50073573 | Msa0855860:CDS | 50.0% |
| CATTGCAATACCACAGCACC+AGG | - | chr5_4:50073567-50073586 | None:intergenic | 50.0% | |
| ! | GGTGCTGTGGTATTGCAATG+TGG | + | chr5_4:50073567-50073586 | Msa0855860:CDS | 50.0% |
| ! | CTCACTGTTTGGGATGAAGG+TGG | - | chr5_4:50073822-50073841 | None:intergenic | 50.0% |
| !! | GATCAGACAGGTGTTGCTCT+CGG | + | chr5_4:50074447-50074466 | Msa0855860:intron | 50.0% |
| !! | ATCAGACAGGTGTTGCTCTC+GGG | + | chr5_4:50074448-50074467 | Msa0855860:intron | 50.0% |
| ! | GCAACGTGAAGAGCATAGTC+TGG | - | chr5_4:50074525-50074544 | None:intergenic | 50.0% |
| CATGGCATGCAGACCAAACA+TGG | + | chr5_4:50075197-50075216 | Msa0855860:intron | 50.0% | |
| TGACCTCAGGTCTAATACCC+AGG | + | chr5_4:50075718-50075737 | Msa0855860:intron | 50.0% | |
| ATGCCTGGGTATTAGACCTG+AGG | - | chr5_4:50075724-50075743 | None:intergenic | 50.0% | |
| !! | GAGGGTGGACTAATCCTTCA+TGG | - | chr5_4:50075838-50075857 | None:intergenic | 50.0% |
| ATTAAGAGTCCAACCGAGGG+TGG | - | chr5_4:50075853-50075872 | None:intergenic | 50.0% | |
| ! | GTTTTCCACTAGGTAGGGAG+AGG | - | chr5_4:50075970-50075989 | None:intergenic | 50.0% |
| CAAGGAGATTGCATGCTCCA+AGG | + | chr5_4:50076258-50076277 | Msa0855860:CDS | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr5_4:50076359-50076378 | None:intergenic | 50.0% |
| GTGGATTCAATGGCTGTGGA+TGG | + | chr5_4:50076511-50076530 | Msa0855860:CDS | 50.0% | |
| GGCTTGACCCGTGGATATTA+CGG | - | chr5_4:50076594-50076613 | None:intergenic | 50.0% | |
| GACACTAGTTGTCTAGGTGG+GGG | - | chr5_4:50076615-50076634 | None:intergenic | 50.0% | |
| GAGGGAACTCGCTTCCATCA+GGG | + | chr5_4:50071859-50071878 | Msa0855860:CDS | 55.0% | |
| TCGCTTCCATCAGGGTCAGA+TGG | + | chr5_4:50071867-50071886 | Msa0855860:CDS | 55.0% | |
| TCCCTGTCTTTAGCGGCAGT+AGG | - | chr5_4:50072041-50072060 | None:intergenic | 55.0% | |
| GCAGAGGTCCCTGTCTTTAG+CGG | - | chr5_4:50072048-50072067 | None:intergenic | 55.0% | |
| TATGCAGGGGGTTCTGTTGG+CGG | + | chr5_4:50072209-50072228 | Msa0855860:CDS | 55.0% | |
| ! | GCCAAAAAGTGCGAGGCTTC+TGG | + | chr5_4:50072296-50072315 | Msa0855860:CDS | 55.0% |
| ! | CCCAGAAGCCTCGCACTTTT+TGG | - | chr5_4:50072300-50072319 | None:intergenic | 55.0% |
| CCTCTACACCATCACCATGG+TGG | - | chr5_4:50073338-50073357 | None:intergenic | 55.0% | |
| !! | CCACCATGGTGATGGTGTAG+AGG | + | chr5_4:50073335-50073354 | Msa0855860:CDS | 55.0% |
| CCTCCTCTACACCATCACCA+TGG | - | chr5_4:50073341-50073360 | None:intergenic | 55.0% | |
| !! | CCATGGTGATGGTGTAGAGG+AGG | + | chr5_4:50073338-50073357 | Msa0855860:CDS | 55.0% |
| GTTCCTCTTCTGTTGCTCGG+TGG | + | chr5_4:50073681-50073700 | Msa0855860:CDS | 55.0% | |
| !! | GGCACGGTGTTGGTGTTATG+AGG | + | chr5_4:50073728-50073747 | Msa0855860:CDS | 55.0% |
| CAGTTGAGGTGGGGGAGTTA+GGG | - | chr5_4:50074816-50074835 | None:intergenic | 55.0% | |
| !! | TAAGGTTGGCTCGGCAGTTG+AGG | - | chr5_4:50074830-50074849 | None:intergenic | 55.0% |
| !! | AGGATTAGTCCACCCTCGGT+TGG | + | chr5_4:50075841-50075860 | Msa0855860:intron | 55.0% |
| AGTAGCCTCTCCCTACCTAG+TGG | + | chr5_4:50075962-50075981 | Msa0855860:intron | 55.0% | |
| GCATTGTGATATGCAGGGGC+CGG | + | chr5_4:50076323-50076342 | Msa0855860:intron | 55.0% | |
| CATTGTGATATGCAGGGGCC+GGG | + | chr5_4:50076324-50076343 | Msa0855860:intron | 55.0% | |
| ATTGTGATATGCAGGGGCCG+GGG | + | chr5_4:50076325-50076344 | Msa0855860:intron | 55.0% | |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr5_4:50076357-50076376 | None:intergenic | 55.0% |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr5_4:50076358-50076377 | None:intergenic | 55.0% |
| TGTCTTCAGGTGACAGGGTC+CGG | + | chr5_4:50076487-50076506 | Msa0855860:intron | 55.0% | |
| CACAGCCATTGAATCCACCC+CGG | - | chr5_4:50076509-50076528 | None:intergenic | 55.0% | |
| GGAGGGAACTCGCTTCCATC+AGG | + | chr5_4:50071858-50071877 | Msa0855860:CDS | 60.0% | |
| CCTCCACCGAGCAACAGAAG+AGG | - | chr5_4:50073687-50073706 | None:intergenic | 60.0% | |
| ! | CCTCTTCTGTTGCTCGGTGG+AGG | + | chr5_4:50073684-50073703 | Msa0855860:CDS | 60.0% |
| ! | CTTCTGTTGCTCGGTGGAGG+TGG | + | chr5_4:50073687-50073706 | Msa0855860:CDS | 60.0% |
| TGAGGTGGGGGAGTTAGGGA+TGG | - | chr5_4:50074812-50074831 | None:intergenic | 60.0% | |
| GCAGTTGAGGTGGGGGAGTT+AGG | - | chr5_4:50074817-50074836 | None:intergenic | 60.0% | |
| !! | TTGGCTCGGCAGTTGAGGTG+GGG | - | chr5_4:50074825-50074844 | None:intergenic | 60.0% |
| !! | GTTGGCTCGGCAGTTGAGGT+GGG | - | chr5_4:50074826-50074845 | None:intergenic | 60.0% |
| GTCTTCAGGTGACAGGGTCC+GGG | + | chr5_4:50076488-50076507 | Msa0855860:intron | 60.0% | |
| TCTTCAGGTGACAGGGTCCG+GGG | + | chr5_4:50076489-50076508 | Msa0855860:intron | 60.0% | |
| ! | AGGGTCCGGGGTGGATTCAA+TGG | + | chr5_4:50076501-50076520 | Msa0855860:CDS | 60.0% |
| ! | CGGGGTGGATTCAATGGCTG+TGG | + | chr5_4:50076507-50076526 | Msa0855860:CDS | 60.0% |
| CGGTCGGTCGGTCACCTGAA+AGG | - | chr5_4:50070779-50070798 | None:intergenic | 65.0% | |
| GGTGTGTGAGTCCGCCCACT+TGG | + | chr5_4:50071033-50071052 | Msa0855860:intron | 65.0% | |
| ! | TGGCTCGGCAGTTGAGGTGG+GGG | - | chr5_4:50074824-50074843 | None:intergenic | 65.0% |
| !! | GGTTGGCTCGGCAGTTGAGG+TGG | - | chr5_4:50074827-50074846 | None:intergenic | 65.0% |
| GGTGTCCGGGGTTCGAACCC+CGG | - | chr5_4:50076345-50076364 | None:intergenic | 70.0% | |
| TCAGGTGACAGGGTCCGGGG+TGG | + | chr5_4:50076492-50076511 | Msa0855860:intron | 70.0% | |
| CTAGGTGGGGGCTTGACCCG+TGG | - | chr5_4:50076603-50076622 | None:intergenic | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr5_4:50076337-50076356 | Msa0855860:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 50070588 | 50077068 | 50070588 | ID=Msa0855860;Name=Msa0855860 |
| chr5_4 | mRNA | 50070588 | 50077068 | 50070588 | ID=Msa0855860-mRNA-1;Parent=Msa0855860;Name=Msa0855860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=210|1|1|1|0.85|0.75|8|480|499 |
| chr5_4 | exon | 50070588 | 50070783 | 50070588 | ID=Msa0855860-mRNA-1:exon:15624;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50071826 | 50072376 | 50071826 | ID=Msa0855860-mRNA-1:exon:15625;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50073309 | 50073749 | 50073309 | ID=Msa0855860-mRNA-1:exon:15626;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50074453 | 50074683 | 50074453 | ID=Msa0855860-mRNA-1:exon:15627;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50075451 | 50075518 | 50075451 | ID=Msa0855860-mRNA-1:exon:15628;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50075591 | 50075648 | 50075591 | ID=Msa0855860-mRNA-1:exon:15629;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50076208 | 50076279 | 50076208 | ID=Msa0855860-mRNA-1:exon:15630;Parent=Msa0855860-mRNA-1 |
| chr5_4 | exon | 50076496 | 50077068 | 50076496 | ID=Msa0855860-mRNA-1:exon:15631;Parent=Msa0855860-mRNA-1 |
| chr5_4 | five_prime_UTR | 50070588 | 50070783 | 50070588 | ID=Msa0855860-mRNA-1:five_prime_utr;Parent=Msa0855860-mRNA-1 |
| chr5_4 | five_prime_UTR | 50071826 | 50071839 | 50071826 | ID=Msa0855860-mRNA-1:five_prime_utr;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50071840 | 50072376 | 50071840 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50073309 | 50073749 | 50073309 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50074453 | 50074683 | 50074453 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50075451 | 50075518 | 50075451 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50075591 | 50075648 | 50075591 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50076208 | 50076279 | 50076208 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | CDS | 50076496 | 50076588 | 50076496 | ID=Msa0855860-mRNA-1:cds;Parent=Msa0855860-mRNA-1 |
| chr5_4 | three_prime_UTR | 50076589 | 50077068 | 50076589 | ID=Msa0855860-mRNA-1:three_prime_utr;Parent=Msa0855860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
