Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856660 | RHN61995.1 | 79.167 | 72 | 13 | 1 | 6 | 77 | 39 | 108 | 8.42e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856660 | A0A396IE46 | 79.167 | 72 | 13 | 1 | 6 | 77 | 39 | 108 | 4.02e-31 | 116 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0816210 | Msa0856660 | 0.862764 | 4.020732e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856660 | MtrunA17_Chr4g0042631 | 79.167 | 72 | 13 | 1 | 6 | 77 | 39 | 108 | 7.75e-35 | 116 |
| Msa0856660 | MtrunA17_Chr7g0232921 | 72.340 | 47 | 13 | 0 | 6 | 52 | 27 | 73 | 4.94e-21 | 82.0 |
| Msa0856660 | MtrunA17_Chr6g0473911 | 73.333 | 30 | 8 | 0 | 6 | 35 | 41 | 70 | 4.19e-11 | 53.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAGCTATTTGGAAAT+TGG | 0.198762 | 5_4:-51482403 | Msa0856660:three_prime_UTR |
| CCTTATTTGCAATTATAAAA+AGG | 0.205647 | 5_4:-51482067 | Msa0856660:three_prime_UTR |
| AGTTACTTTGATAAATAAAT+TGG | 0.221391 | 5_4:-51482133 | Msa0856660:three_prime_UTR |
| TATTATAATCAGAAGCTATT+TGG | 0.227740 | 5_4:-51482410 | Msa0856660:three_prime_UTR |
| CAGTGCAATGTTGATTGATT+TGG | 0.231300 | 5_4:-51484544 | Msa0856660:exon |
| TTGGTAAGATGGTATGTAAA+AGG | 0.298662 | 5_4:-51482114 | Msa0856660:three_prime_UTR |
| ACAGCTGCGGACATTTCTTC+TGG | 0.305832 | 5_4:-51482519 | Msa0856660:three_prime_UTR |
| TCTACAGGCATTGGCGAAAA+TGG | 0.313793 | 5_4:-51482195 | Msa0856660:three_prime_UTR |
| GCTTCGTTTGCAAGAGGGTT+TGG | 0.334355 | 5_4:-51482898 | Msa0856660:CDS |
| AGCTATTTGGAAATTGGTTA+TGG | 0.340909 | 5_4:-51482397 | Msa0856660:three_prime_UTR |
| TTGTTCTTGCCATCAACTTA+CGG | 0.354553 | 5_4:+51482310 | None:intergenic |
| TGTTCTTGCCATCAACTTAC+GGG | 0.358089 | 5_4:+51482311 | None:intergenic |
| AGATTGACAGAGTTGTTAGA+AGG | 0.366557 | 5_4:-51483255 | Msa0856660:CDS |
| AGTGCAATGTTGATTGATTT+GGG | 0.375007 | 5_4:-51484543 | Msa0856660:intron |
| AAATCTGCATGGAGAGGAAT+TGG | 0.385757 | 5_4:-51482682 | Msa0856660:three_prime_UTR |
| CAGCTACCTCAACCTCATTC+TGG | 0.392976 | 5_4:+51482836 | None:intergenic |
| AATAAGGCATCCACTTGAAT+AGG | 0.407111 | 5_4:+51482083 | None:intergenic |
| TGATAAATAAATTGGTAAGA+TGG | 0.410540 | 5_4:-51482125 | Msa0856660:three_prime_UTR |
| GTGCAACGCCCGTAAGTTGA+TGG | 0.418678 | 5_4:-51482319 | Msa0856660:three_prime_UTR |
| ACAAAATTGCCTCCATCTAC+AGG | 0.450698 | 5_4:-51482210 | Msa0856660:three_prime_UTR |
| CTAACAACTCTGTCAATCTC+TGG | 0.451922 | 5_4:+51483259 | None:intergenic |
| TGGTAAGATGGTATGTAAAA+GGG | 0.453244 | 5_4:-51482113 | Msa0856660:three_prime_UTR |
| ACCTCAACCTCATTCTGGTT+CGG | 0.468186 | 5_4:+51482841 | None:intergenic |
| AGAAACTCGGTAGCTCGATA+TGG | 0.468637 | 5_4:-51482597 | Msa0856660:three_prime_UTR |
| TACCGAGTTTCTGTACTCAT+TGG | 0.471215 | 5_4:+51482608 | None:intergenic |
| CACGGGAGCAGCTAACAATA+AGG | 0.482265 | 5_4:-51482271 | Msa0856660:three_prime_UTR |
| GATTGACAGAGTTGTTAGAA+GGG | 0.495391 | 5_4:-51483254 | Msa0856660:CDS |
| CTTCCTGCTTCGTTTGCAAG+AGG | 0.503520 | 5_4:-51482904 | Msa0856660:CDS |
| TTTGTCTTCAACACCAACAT+TGG | 0.503993 | 5_4:+51482228 | None:intergenic |
| TTACGGGCGTTGCACAGAGC+TGG | 0.507146 | 5_4:+51482327 | None:intergenic |
| TTGCCTCCATCTACAGGCAT+TGG | 0.510059 | 5_4:-51482204 | Msa0856660:three_prime_UTR |
| AACCCTCTTGCAAACGAAGC+AGG | 0.515959 | 5_4:+51482901 | None:intergenic |
| AGAATGTTGTTGCAGAATCA+AGG | 0.516563 | 5_4:-51482633 | Msa0856660:three_prime_UTR |
| GTCTTCAACACCAACATTGG+AGG | 0.518617 | 5_4:+51482231 | None:intergenic |
| AAGATCAAACTTGGTGTCAC+GGG | 0.530779 | 5_4:-51482288 | Msa0856660:three_prime_UTR |
| GGACATTTCTTCTGGAGTGT+TGG | 0.533907 | 5_4:-51482511 | Msa0856660:three_prime_UTR |
| TTCCTGCTTCGTTTGCAAGA+GGG | 0.541204 | 5_4:-51482903 | Msa0856660:CDS |
| TTTCTATCACACAATTGTCA+AGG | 0.553760 | 5_4:-51482547 | Msa0856660:three_prime_UTR |
| TCCGAACCAGAATGAGGTTG+AGG | 0.555820 | 5_4:-51482842 | Msa0856660:CDS |
| TCTTTGTGCACCTCCAATGT+TGG | 0.556229 | 5_4:-51482241 | Msa0856660:three_prime_UTR |
| TTGACAGTTGAAGGTAATGC+TGG | 0.556688 | 5_4:-51483283 | Msa0856660:intron |
| GGGTTAGTTGCCTATTCAAG+TGG | 0.558614 | 5_4:-51482093 | Msa0856660:three_prime_UTR |
| GCAAGAACAAAGATCAAACT+TGG | 0.571276 | 5_4:-51482297 | Msa0856660:three_prime_UTR |
| AAAGATCAAACTTGGTGTCA+CGG | 0.572250 | 5_4:-51482289 | Msa0856660:three_prime_UTR |
| TCGCCAATGCCTGTAGATGG+AGG | 0.609903 | 5_4:+51482201 | None:intergenic |
| GTGGTTAGATATACGTGTGT+TGG | 0.614493 | 5_4:-51482457 | Msa0856660:three_prime_UTR |
| CTCCGTGGAGGATTGAAGCA+AGG | 0.615258 | 5_4:+51482654 | None:intergenic |
| ATCCTTGCTTCAATCCTCCA+CGG | 0.617427 | 5_4:-51482656 | Msa0856660:three_prime_UTR |
| ACGTGATCCGAACCAGAATG+AGG | 0.623333 | 5_4:-51482848 | Msa0856660:CDS |
| TGTTTGTGTAGCGTAAGGGA+AGG | 0.626170 | 5_4:-51482927 | Msa0856660:intron |
| TGCCAATGAGTACAGAAACT+CGG | 0.640910 | 5_4:-51482610 | Msa0856660:three_prime_UTR |
| TTCTGCAACAACATTCTCCG+TGG | 0.648161 | 5_4:+51482639 | None:intergenic |
| TGCAACAACATTCTCCGTGG+AGG | 0.648705 | 5_4:+51482642 | None:intergenic |
| CATGTCATACTCCATGTGGA+AGG | 0.657614 | 5_4:+51483213 | None:intergenic |
| TAACTTGAGAACCTTCCACA+TGG | 0.662862 | 5_4:-51483224 | Msa0856660:CDS |
| GGTTAGAAATCTGCATGGAG+AGG | 0.664054 | 5_4:-51482688 | Msa0856660:three_prime_UTR |
| AGCACATGTCATACTCCATG+TGG | 0.685350 | 5_4:+51483209 | None:intergenic |
| TGAGTGTTTGTGTAGCGTAA+GGG | 0.688220 | 5_4:-51482931 | Msa0856660:intron |
| TGTCAAGGAGTTAACAGCTG+CGG | 0.688752 | 5_4:-51482532 | Msa0856660:three_prime_UTR |
| ATGGTGGTTAGAAATCTGCA+TGG | 0.704267 | 5_4:-51482693 | Msa0856660:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTATAATTT+AGG | - | chr5_4:51483231-51483250 | Msa0856660:CDS | 0.0% |
| !!! | ATTTTTTACTATTTATGATA+TGG | - | chr5_4:51482466-51482485 | Msa0856660:three_prime_UTR | 10.0% |
| !!! | AGAATTTTTTTAAGAAAAAA+AGG | - | chr5_4:51483439-51483458 | Msa0856660:intron | 10.0% |
| !! | AGTTAAACAAAATACAAAAT+GGG | + | chr5_4:51482311-51482330 | None:intergenic | 15.0% |
| !! | AAGTTAAACAAAATACAAAA+TGG | + | chr5_4:51482312-51482331 | None:intergenic | 15.0% |
| !! | TTCAATTAATATATTATTGG+AGG | - | chr5_4:51482346-51482365 | Msa0856660:three_prime_UTR | 15.0% |
| !! | TCAATTAATATATTATTGGA+GGG | - | chr5_4:51482347-51482366 | Msa0856660:three_prime_UTR | 15.0% |
| !!! | AGTTACTTTGATAAATAAAT+TGG | - | chr5_4:51485444-51485463 | Msa0856660:intron | 15.0% |
| !! | CGCTTCAATTAATATATTAT+TGG | - | chr5_4:51482343-51482362 | Msa0856660:three_prime_UTR | 20.0% |
| !! | TGTTATCACAATTACATTAT+TGG | + | chr5_4:51482530-51482549 | None:intergenic | 20.0% |
| !! | TTGTGATAACAATAATGTAT+TGG | - | chr5_4:51482539-51482558 | Msa0856660:three_prime_UTR | 20.0% |
| !! | TAAGGATACATGTTATATAT+GGG | + | chr5_4:51482602-51482621 | None:intergenic | 20.0% |
| !! | TTAAGGATACATGTTATATA+TGG | + | chr5_4:51482603-51482622 | None:intergenic | 20.0% |
| !! | ATATGAACATCAAATAAGAT+TGG | + | chr5_4:51483084-51483103 | None:intergenic | 20.0% |
| !! | TTTGTCACTAATAATAGAAA+AGG | + | chr5_4:51483487-51483506 | None:intergenic | 20.0% |
| !! | ACTCATTTAAATAGAAATGA+GGG | + | chr5_4:51483897-51483916 | None:intergenic | 20.0% |
| !!! | TATGTTGTTTCTATTGTATT+TGG | - | chr5_4:51484232-51484251 | Msa0856660:intron | 20.0% |
| !!! | TTAAAGCAATCATCTTATTT+GGG | - | chr5_4:51484255-51484274 | Msa0856660:intron | 20.0% |
| !! | AGATCATAATATACATCAAA+TGG | + | chr5_4:51484562-51484581 | None:intergenic | 20.0% |
| !! | ATTGTGTGATAGAAAAAAAT+GGG | + | chr5_4:51485025-51485044 | None:intergenic | 20.0% |
| !! | AATTGTGTGATAGAAAAAAA+TGG | + | chr5_4:51485026-51485045 | None:intergenic | 20.0% |
| !! | TATTATAATCAGAAGCTATT+TGG | - | chr5_4:51485167-51485186 | Msa0856660:intron | 20.0% |
| !! | TGATAAATAAATTGGTAAGA+TGG | - | chr5_4:51485452-51485471 | Msa0856660:intron | 20.0% |
| !!! | CCTTTTTATAATTGCAAATA+AGG | + | chr5_4:51485513-51485532 | None:intergenic | 20.0% |
| !!! | CCTTATTTGCAATTATAAAA+AGG | - | chr5_4:51485510-51485529 | Msa0856660:intron | 20.0% |
| !! | AGAAATAGAAAGAGCATAAA+AGG | + | chr5_4:51482285-51482304 | None:intergenic | 25.0% |
| ! | ATTAATATATTATTGGAGGG+TGG | - | chr5_4:51482350-51482369 | Msa0856660:three_prime_UTR | 25.0% |
| !! | TTAAAGATGAACAGTGATTT+TGG | - | chr5_4:51482415-51482434 | Msa0856660:three_prime_UTR | 25.0% |
| ! | GATATGGTTATTATTTGTGT+AGG | - | chr5_4:51482482-51482501 | Msa0856660:three_prime_UTR | 25.0% |
| ! | TTGCAATTCAACATACATTA+AGG | + | chr5_4:51482620-51482639 | None:intergenic | 25.0% |
| !! | TTCTTAAATCATCCTTTTCT+TGG | - | chr5_4:51483260-51483279 | Msa0856660:CDS | 25.0% |
| ! | AATTCAAAAACAAATCGTGT+AGG | - | chr5_4:51483414-51483433 | Msa0856660:intron | 25.0% |
| ! | TTTCACATTTCAAAACCTTA+GGG | + | chr5_4:51483694-51483713 | None:intergenic | 25.0% |
| !! | TTTTCACATTTCAAAACCTT+AGG | + | chr5_4:51483695-51483714 | None:intergenic | 25.0% |
| ! | CACTCATTTAAATAGAAATG+AGG | + | chr5_4:51483898-51483917 | None:intergenic | 25.0% |
| ! | CTCATTTCTATTTAAATGAG+TGG | - | chr5_4:51483896-51483915 | Msa0856660:intron | 25.0% |
| !!! | ATAAGATGATTTTAACTGCA+TGG | + | chr5_4:51484193-51484212 | None:intergenic | 25.0% |
| ! | GTTAAAGCAATCATCTTATT+TGG | - | chr5_4:51484254-51484273 | Msa0856660:intron | 25.0% |
| !! | TCCCTTATTTATTCCATATT+TGG | - | chr5_4:51484503-51484522 | Msa0856660:intron | 25.0% |
| ! | GCCAAATATGGAATAAATAA+GGG | + | chr5_4:51484507-51484526 | None:intergenic | 25.0% |
| ! | AGCCAAATATGGAATAAATA+AGG | + | chr5_4:51484508-51484527 | None:intergenic | 25.0% |
| ! | TTATTTATTCCATATTTGGC+TGG | - | chr5_4:51484507-51484526 | Msa0856660:intron | 25.0% |
| !!! | ACATTTTTAAAGAGCTTTTG+TGG | - | chr5_4:51484806-51484825 | Msa0856660:intron | 25.0% |
| !!! | CATTTTTAAAGAGCTTTTGT+GGG | - | chr5_4:51484807-51484826 | Msa0856660:intron | 25.0% |
| !! | CAACATAAAGAAAAAGTGTA+AGG | + | chr5_4:51485101-51485120 | None:intergenic | 25.0% |
| !!! | TACACTTTTTCTTTATGTTG+TGG | - | chr5_4:51485101-51485120 | Msa0856660:intron | 25.0% |
| ATCTTTCATGAACAACTTTC+TGG | - | chr5_4:51482244-51482263 | Msa0856660:three_prime_UTR | 30.0% | |
| ! | AAAGAGCATAAAAGGTATAG+AGG | + | chr5_4:51482277-51482296 | None:intergenic | 30.0% |
| AAAATTCCCTTAATTGCAGA+AGG | + | chr5_4:51482441-51482460 | None:intergenic | 30.0% | |
| !! | ATTTGTGTAGGTTTGATTTG+TGG | - | chr5_4:51482494-51482513 | Msa0856660:three_prime_UTR | 30.0% |
| ! | TGTTCTTTCCTTTTCATATC+AGG | - | chr5_4:51482665-51482684 | Msa0856660:three_prime_UTR | 30.0% |
| TTCTTCAACCTGATATGAAA+AGG | + | chr5_4:51482676-51482695 | None:intergenic | 30.0% | |
| ! | AGTGCAATGTTGATTGATTT+GGG | - | chr5_4:51483034-51483053 | Msa0856660:intron | 30.0% |
| TAACTATATAGTCCCTTAAC+TGG | - | chr5_4:51483125-51483144 | Msa0856660:intron | 30.0% | |
| AGGAACAAATAACTATAAGC+AGG | + | chr5_4:51483292-51483311 | None:intergenic | 30.0% | |
| CCTAATGATACTTCTTTAAG+AGG | + | chr5_4:51483312-51483331 | None:intergenic | 30.0% | |
| !! | CCTCTTAAAGAAGTATCATT+AGG | - | chr5_4:51483309-51483328 | Msa0856660:intron | 30.0% |
| AAAAACTGAACTTCATTTGG+TGG | + | chr5_4:51483359-51483378 | None:intergenic | 30.0% | |
| CCAAAAAACTGAACTTCATT+TGG | + | chr5_4:51483362-51483381 | None:intergenic | 30.0% | |
| !!! | CCAAATGAAGTTCAGTTTTT+TGG | - | chr5_4:51483359-51483378 | Msa0856660:intron | 30.0% |
| ATTGTGAAAGATGTGTTCAA+TGG | + | chr5_4:51483514-51483533 | None:intergenic | 30.0% | |
| !! | CAATCATTTTTAACTCGACT+AGG | - | chr5_4:51483530-51483549 | Msa0856660:intron | 30.0% |
| TCAATTCAAAGTGAATTCCA+TGG | - | chr5_4:51483562-51483581 | Msa0856660:intron | 30.0% | |
| CAATTCAAAGTGAATTCCAT+GGG | - | chr5_4:51483563-51483582 | Msa0856660:intron | 30.0% | |
| AATCAAGATAAGATATCCCA+TGG | + | chr5_4:51483582-51483601 | None:intergenic | 30.0% | |
| AAAATGTAAAGGCTTGGATA+GGG | + | chr5_4:51483644-51483663 | None:intergenic | 30.0% | |
| TAAAATGTAAAGGCTTGGAT+AGG | + | chr5_4:51483645-51483664 | None:intergenic | 30.0% | |
| ACTTGCAGCTTAAAATGTAA+AGG | + | chr5_4:51483655-51483674 | None:intergenic | 30.0% | |
| ! | ATTTCAAAACCTTAGGGTTT+TGG | + | chr5_4:51483688-51483707 | None:intergenic | 30.0% |
| AAATAGAAATGAGGGTTAGA+AGG | + | chr5_4:51483889-51483908 | None:intergenic | 30.0% | |
| AGGATGATGTTGATGTTATA+TGG | + | chr5_4:51483936-51483955 | None:intergenic | 30.0% | |
| AATTGGCTAATCATTCCATT+GGG | + | chr5_4:51483977-51483996 | None:intergenic | 30.0% | |
| AAATTGGCTAATCATTCCAT+TGG | + | chr5_4:51483978-51483997 | None:intergenic | 30.0% | |
| TTTGGCAAACATGGTAAAAT+TGG | + | chr5_4:51483994-51484013 | None:intergenic | 30.0% | |
| TTGATTTACCATACCTTTCA+TGG | + | chr5_4:51484045-51484064 | None:intergenic | 30.0% | |
| CACCTGAATTTGTATTTGAT+GGG | - | chr5_4:51484133-51484152 | Msa0856660:intron | 30.0% | |
| TTCCCATCAAATACAAATTC+AGG | + | chr5_4:51484138-51484157 | None:intergenic | 30.0% | |
| TTCCAATAAACTAAACAGCA+TGG | + | chr5_4:51484444-51484463 | None:intergenic | 30.0% | |
| TCCATTATAGCAACTAACTA+AGG | + | chr5_4:51484535-51484554 | None:intergenic | 30.0% | |
| TAGCTGTTGAAAAAGAAGAA+CGG | - | chr5_4:51484758-51484777 | Msa0856660:intron | 30.0% | |
| !!! | AGGTTTATTTTACTGATGGT+TGG | - | chr5_4:51484783-51484802 | Msa0856660:intron | 30.0% |
| ! | AAATCGACATCTTTTTCTGA+TGG | - | chr5_4:51484865-51484884 | Msa0856660:intron | 30.0% |
| GAAAAAAATGGGAGGAAAAA+TGG | + | chr5_4:51485014-51485033 | None:intergenic | 30.0% | |
| TTTCTATCACACAATTGTCA+AGG | - | chr5_4:51485030-51485049 | Msa0856660:intron | 30.0% | |
| AAAAATGCATCTCAAGTTAG+AGG | + | chr5_4:51485146-51485165 | None:intergenic | 30.0% | |
| ATCAGAAGCTATTTGGAAAT+TGG | - | chr5_4:51485174-51485193 | Msa0856660:intron | 30.0% | |
| AGCTATTTGGAAATTGGTTA+TGG | - | chr5_4:51485180-51485199 | Msa0856660:intron | 30.0% | |
| TTGGTAAGATGGTATGTAAA+AGG | - | chr5_4:51485463-51485482 | Msa0856660:intron | 30.0% | |
| TGGTAAGATGGTATGTAAAA+GGG | - | chr5_4:51485464-51485483 | Msa0856660:intron | 30.0% | |
| TTCACTCAGATCTGTATATG+AGG | - | chr5_4:51482047-51482066 | Msa0856660:three_prime_UTR | 35.0% | |
| TCACTCAGATCTGTATATGA+GGG | - | chr5_4:51482048-51482067 | Msa0856660:three_prime_UTR | 35.0% | |
| ATTCATTCAGAATCAAGGAC+TGG | + | chr5_4:51482204-51482223 | None:intergenic | 35.0% | |
| AGTCCTTGATTCTGAATGAA+TGG | - | chr5_4:51482203-51482222 | Msa0856660:three_prime_UTR | 35.0% | |
| CTTCCATTCATTCAGAATCA+AGG | + | chr5_4:51482209-51482228 | None:intergenic | 35.0% | |
| TCTGAATGAATGGAAGATGA+AGG | - | chr5_4:51482213-51482232 | Msa0856660:three_prime_UTR | 35.0% | |
| ! | ATTGGTTGGATTGGATGATT+CGG | - | chr5_4:51482392-51482411 | Msa0856660:three_prime_UTR | 35.0% |
| !! | ATTTTGGCCTTCTGCAATTA+AGG | - | chr5_4:51482431-51482450 | Msa0856660:three_prime_UTR | 35.0% |
| !! | TTTTGGCCTTCTGCAATTAA+GGG | - | chr5_4:51482432-51482451 | Msa0856660:three_prime_UTR | 35.0% |
| TATCGCTCTATTGTTGAATG+AGG | + | chr5_4:51482752-51482771 | None:intergenic | 35.0% | |
| ! | ACTGAATGACGGAAATTGTA+AGG | + | chr5_4:51482906-51482925 | None:intergenic | 35.0% |
| CAATATAATCAACTGCAGCA+AGG | + | chr5_4:51482983-51483002 | None:intergenic | 35.0% | |
| ! | CAGTGCAATGTTGATTGATT+TGG | - | chr5_4:51483033-51483052 | Msa0856660:intron | 35.0% |
| ! | TCTGAGATACATCCAGTTAA+GGG | + | chr5_4:51483140-51483159 | None:intergenic | 35.0% |
| !! | TTCTGAGATACATCCAGTTA+AGG | + | chr5_4:51483141-51483160 | None:intergenic | 35.0% |
| AACAAATCCTGCAAATCAAG+AGG | + | chr5_4:51483335-51483354 | None:intergenic | 35.0% | |
| !!! | TTCAGTTTTTTGGCTATGCA+AGG | - | chr5_4:51483369-51483388 | Msa0856660:intron | 35.0% |
| CAGCTTAAAATGTAAAGGCT+TGG | + | chr5_4:51483650-51483669 | None:intergenic | 35.0% | |
| ! | ATTTTAAGCTGCAAGTTCCA+TGG | - | chr5_4:51483659-51483678 | Msa0856660:intron | 35.0% |
| ! | TTTTAAGCTGCAAGTTCCAT+GGG | - | chr5_4:51483660-51483679 | Msa0856660:intron | 35.0% |
| GACATAGTGTATGAACAGAA+GGG | + | chr5_4:51483729-51483748 | None:intergenic | 35.0% | |
| AGACATAGTGTATGAACAGA+AGG | + | chr5_4:51483730-51483749 | None:intergenic | 35.0% | |
| ! | AGCACACGTTTTGTAGATAT+AGG | - | chr5_4:51483809-51483828 | Msa0856660:intron | 35.0% |
| ATTACCATCAGAAATCCCAA+TGG | - | chr5_4:51483959-51483978 | Msa0856660:intron | 35.0% | |
| ATTGTTGTCCATGAAAGGTA+TGG | - | chr5_4:51484034-51484053 | Msa0856660:intron | 35.0% | |
| AGGTGGCATCAAAAACATTA+TGG | + | chr5_4:51484118-51484137 | None:intergenic | 35.0% | |
| CCATCAAATACAAATTCAGG+TGG | + | chr5_4:51484135-51484154 | None:intergenic | 35.0% | |
| CCACCTGAATTTGTATTTGA+TGG | - | chr5_4:51484132-51484151 | Msa0856660:intron | 35.0% | |
| AGATTGACAGAGTTGTTAGA+AGG | - | chr5_4:51484322-51484341 | Msa0856660:intron | 35.0% | |
| GATTGACAGAGTTGTTAGAA+GGG | - | chr5_4:51484323-51484342 | Msa0856660:intron | 35.0% | |
| ! | TGCCATGCTGTTTAGTTTAT+TGG | - | chr5_4:51484439-51484458 | Msa0856660:intron | 35.0% |
| AAGGGATTTATTGACCTTCA+AGG | + | chr5_4:51484489-51484508 | None:intergenic | 35.0% | |
| GCCTTAGTTAGTTGCTATAA+TGG | - | chr5_4:51484531-51484550 | Msa0856660:intron | 35.0% | |
| TCATCAGTGAGCAAATACTT+TGG | + | chr5_4:51484629-51484648 | None:intergenic | 35.0% | |
| AGCTGTTGAAAAAGAAGAAC+GGG | - | chr5_4:51484759-51484778 | Msa0856660:intron | 35.0% | |
| !!! | GGGAAGGTTTATTTTACTGA+TGG | - | chr5_4:51484779-51484798 | Msa0856660:intron | 35.0% |
| ! | AAAGAGCTTTTGTGGGATTT+TGG | - | chr5_4:51484814-51484833 | Msa0856660:intron | 35.0% |
| ! | AAGAGCTTTTGTGGGATTTT+GGG | - | chr5_4:51484815-51484834 | Msa0856660:intron | 35.0% |
| AGAATGTTGTTGCAGAATCA+AGG | - | chr5_4:51484944-51484963 | Msa0856660:intron | 35.0% | |
| GTGTGATAGAAAAAAATGGG+AGG | + | chr5_4:51485022-51485041 | None:intergenic | 35.0% | |
| ! | GATTTGTCTTGCGTATTTTC+TGG | - | chr5_4:51485220-51485239 | Msa0856660:intron | 35.0% |
| TTGTTCTTGCCATCAACTTA+CGG | + | chr5_4:51485270-51485289 | None:intergenic | 35.0% | |
| GCAAGAACAAAGATCAAACT+TGG | - | chr5_4:51485280-51485299 | Msa0856660:intron | 35.0% | |
| !! | AAAGATCAAACTTGGTGTCA+CGG | - | chr5_4:51485288-51485307 | Msa0856660:intron | 35.0% |
| TTTGTCTTCAACACCAACAT+TGG | + | chr5_4:51485352-51485371 | None:intergenic | 35.0% | |
| ! | AATAAGGCATCCACTTGAAT+AGG | + | chr5_4:51485497-51485516 | None:intergenic | 35.0% |
| GATGGAGGCAAATCAAGATT+GGG | + | chr5_4:51482145-51482164 | None:intergenic | 40.0% | |
| AGATGGAGGCAAATCAAGAT+TGG | + | chr5_4:51482146-51482165 | None:intergenic | 40.0% | |
| ATGTTAAATCCAGCAGATGG+AGG | + | chr5_4:51482160-51482179 | None:intergenic | 40.0% | |
| CCAATGTTAAATCCAGCAGA+TGG | + | chr5_4:51482163-51482182 | None:intergenic | 40.0% | |
| CCATCTGCTGGATTTAACAT+TGG | - | chr5_4:51482160-51482179 | Msa0856660:three_prime_UTR | 40.0% | |
| ATATTATTGGAGGGTGGATG+AGG | - | chr5_4:51482356-51482375 | Msa0856660:three_prime_UTR | 40.0% | |
| CCAATCCAACCAATTCAAAC+TGG | + | chr5_4:51482386-51482405 | None:intergenic | 40.0% | |
| CCAGTTTGAATTGGTTGGAT+TGG | - | chr5_4:51482383-51482402 | Msa0856660:three_prime_UTR | 40.0% | |
| ATATGGGAGAGTGAGAAACA+TGG | + | chr5_4:51482586-51482605 | None:intergenic | 40.0% | |
| AGGTTGAAGAACCTATGATC+TGG | - | chr5_4:51482685-51482704 | Msa0856660:three_prime_UTR | 40.0% | |
| TCAAAACCTGCACTGAATGA+CGG | + | chr5_4:51482917-51482936 | None:intergenic | 40.0% | |
| AGCAGGTAATCTCCAAGAAA+AGG | + | chr5_4:51483275-51483294 | None:intergenic | 40.0% | |
| GCTTGGATAGGGTTTATCTA+GGG | + | chr5_4:51483633-51483652 | None:intergenic | 40.0% | |
| ! | CACTATGTCTTGCCATTTCT+TGG | - | chr5_4:51483740-51483759 | Msa0856660:intron | 40.0% |
| GATATAGGCATCATCATACC+TGG | - | chr5_4:51483824-51483843 | Msa0856660:intron | 40.0% | |
| TCATCATACCTGGTGCATTT+AGG | - | chr5_4:51483834-51483853 | Msa0856660:intron | 40.0% | |
| AATGAGGGTTAGAAGGAAGA+TGG | + | chr5_4:51483882-51483901 | None:intergenic | 40.0% | |
| ! | GGATTTCTGATGGTAATGTG+AGG | + | chr5_4:51483956-51483975 | None:intergenic | 40.0% |
| CATTCCATTGGGATTTCTGA+TGG | + | chr5_4:51483966-51483985 | None:intergenic | 40.0% | |
| CATTACCTTCAACTGTCAAC+AGG | + | chr5_4:51484293-51484312 | None:intergenic | 40.0% | |
| TTGACAGTTGAAGGTAATGC+TGG | - | chr5_4:51484294-51484313 | Msa0856660:intron | 40.0% | |
| CTAACAACTCTGTCAATCTC+TGG | + | chr5_4:51484321-51484340 | None:intergenic | 40.0% | |
| TAACTTGAGAACCTTCCACA+TGG | - | chr5_4:51484353-51484372 | Msa0856660:intron | 40.0% | |
| ATGAGTGTTTGTGTAGCGTA+AGG | - | chr5_4:51484645-51484664 | Msa0856660:intron | 40.0% | |
| TGAGTGTTTGTGTAGCGTAA+GGG | - | chr5_4:51484646-51484665 | Msa0856660:intron | 40.0% | |
| GTTGAAAAAGAAGAACGGGA+AGG | - | chr5_4:51484763-51484782 | Msa0856660:intron | 40.0% | |
| ! | TCGACATCTTTTTCTGATGG+TGG | - | chr5_4:51484868-51484887 | Msa0856660:intron | 40.0% |
| ATGGTGGTTAGAAATCTGCA+TGG | - | chr5_4:51484884-51484903 | Msa0856660:intron | 40.0% | |
| AAATCTGCATGGAGAGGAAT+TGG | - | chr5_4:51484895-51484914 | Msa0856660:intron | 40.0% | |
| TGCCAATGAGTACAGAAACT+CGG | - | chr5_4:51484967-51484986 | Msa0856660:intron | 40.0% | |
| TACCGAGTTTCTGTACTCAT+TGG | + | chr5_4:51484972-51484991 | None:intergenic | 40.0% | |
| GTGGTTAGATATACGTGTGT+TGG | - | chr5_4:51485120-51485139 | Msa0856660:intron | 40.0% | |
| TGTTCTTGCCATCAACTTAC+GGG | + | chr5_4:51485269-51485288 | None:intergenic | 40.0% | |
| !! | AAGATCAAACTTGGTGTCAC+GGG | - | chr5_4:51485289-51485308 | Msa0856660:intron | 40.0% |
| ACAAAATTGCCTCCATCTAC+AGG | - | chr5_4:51485367-51485386 | Msa0856660:intron | 40.0% | |
| TGAGGCTGACCAGTTTGAAT+TGG | - | chr5_4:51482374-51482393 | Msa0856660:three_prime_UTR | 45.0% | |
| GCTGACCAGTTTGAATTGGT+TGG | - | chr5_4:51482378-51482397 | Msa0856660:three_prime_UTR | 45.0% | |
| TGAAGAACCTATGATCTGGC+TGG | - | chr5_4:51482689-51482708 | Msa0856660:three_prime_UTR | 45.0% | |
| GAGGCTTGAACAACAGTGTT+GGG | + | chr5_4:51482733-51482752 | None:intergenic | 45.0% | |
| TGAGGCTTGAACAACAGTGT+TGG | + | chr5_4:51482734-51482753 | None:intergenic | 45.0% | |
| CAATTTCCGTCATTCAGTGC+AGG | - | chr5_4:51482908-51482927 | Msa0856660:CDS | 45.0% | |
| !! | CATTAGGCCTCTTGATTTGC+AGG | - | chr5_4:51483325-51483344 | Msa0856660:intron | 45.0% |
| ! | GGATAGGGTTTATCTAGGGT+TGG | + | chr5_4:51483629-51483648 | None:intergenic | 45.0% |
| GGCTTGGATAGGGTTTATCT+AGG | + | chr5_4:51483634-51483653 | None:intergenic | 45.0% | |
| CCATGCCAAAAGTAGCAACT+TGG | + | chr5_4:51483769-51483788 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGCTACTTTTGGCA+TGG | - | chr5_4:51483766-51483785 | Msa0856660:intron | 45.0% |
| AAACGTGTGCTCAGTTCTCT+AGG | + | chr5_4:51483800-51483819 | None:intergenic | 45.0% | |
| TTCACGGTCTTTGGCAAACA+TGG | + | chr5_4:51484003-51484022 | None:intergenic | 45.0% | |
| GGTGCATTGTTGTCCATGAA+AGG | - | chr5_4:51484029-51484048 | Msa0856660:intron | 45.0% | |
| GATCTCCTGTTGACAGTTGA+AGG | - | chr5_4:51484285-51484304 | Msa0856660:intron | 45.0% | |
| CATGTCATACTCCATGTGGA+AGG | + | chr5_4:51484367-51484386 | None:intergenic | 45.0% | |
| AGCACATGTCATACTCCATG+TGG | + | chr5_4:51484371-51484390 | None:intergenic | 45.0% | |
| CCTTCAAGGACGTGTTTCAA+TGG | + | chr5_4:51484475-51484494 | None:intergenic | 45.0% | |
| CCATTGAAACACGTCCTTGA+AGG | - | chr5_4:51484472-51484491 | Msa0856660:intron | 45.0% | |
| ACTAAGGCTCCAGCCAAATA+TGG | + | chr5_4:51484519-51484538 | None:intergenic | 45.0% | |
| TGTTTGTGTAGCGTAAGGGA+AGG | - | chr5_4:51484650-51484669 | Msa0856660:intron | 45.0% | |
| TTCCTGCTTCGTTTGCAAGA+GGG | - | chr5_4:51484674-51484693 | Msa0856660:intron | 45.0% | |
| ! | ACCTCAACCTCATTCTGGTT+CGG | + | chr5_4:51484739-51484758 | None:intergenic | 45.0% |
| ! | AGCTTTTGTGGGATTTTGGG+TGG | - | chr5_4:51484818-51484837 | Msa0856660:intron | 45.0% |
| GGTTAGAAATCTGCATGGAG+AGG | - | chr5_4:51484889-51484908 | Msa0856660:intron | 45.0% | |
| ATCCTTGCTTCAATCCTCCA+CGG | - | chr5_4:51484921-51484940 | Msa0856660:intron | 45.0% | |
| TTCTGCAACAACATTCTCCG+TGG | + | chr5_4:51484941-51484960 | None:intergenic | 45.0% | |
| AGAAACTCGGTAGCTCGATA+TGG | - | chr5_4:51484980-51484999 | Msa0856660:intron | 45.0% | |
| TGTCAAGGAGTTAACAGCTG+CGG | - | chr5_4:51485045-51485064 | Msa0856660:intron | 45.0% | |
| !! | GGACATTTCTTCTGGAGTGT+TGG | - | chr5_4:51485066-51485085 | Msa0856660:intron | 45.0% |
| TCTTTGTGCACCTCCAATGT+TGG | - | chr5_4:51485336-51485355 | Msa0856660:intron | 45.0% | |
| GTCTTCAACACCAACATTGG+AGG | + | chr5_4:51485349-51485368 | None:intergenic | 45.0% | |
| ! | TTTTCGCCAATGCCTGTAGA+TGG | + | chr5_4:51485382-51485401 | None:intergenic | 45.0% |
| !! | TCTACAGGCATTGGCGAAAA+TGG | - | chr5_4:51485382-51485401 | Msa0856660:intron | 45.0% |
| !! | GGGTTAGTTGCCTATTCAAG+TGG | - | chr5_4:51485484-51485503 | Msa0856660:intron | 45.0% |
| !! | CTTGATTTGCCTCCATCTGC+TGG | - | chr5_4:51482148-51482167 | Msa0856660:three_prime_UTR | 50.0% |
| ACTGGTGAGTGTGAGGAAGT+TGG | + | chr5_4:51482186-51482205 | None:intergenic | 50.0% | |
| ! | ATCAAGGACTGGTGAGTGTG+AGG | + | chr5_4:51482193-51482212 | None:intergenic | 50.0% |
| AGAACCTATGATCTGGCTGG+TGG | - | chr5_4:51482692-51482711 | Msa0856660:three_prime_UTR | 50.0% | |
| GCAACTTGGCAGCCAAGAAA+TGG | + | chr5_4:51483755-51483774 | None:intergenic | 50.0% | |
| !!! | GGCTGCCAAGTTGCTACTTT+TGG | - | chr5_4:51483761-51483780 | Msa0856660:intron | 50.0% |
| AGCAAGGACCTAAATGCACC+AGG | + | chr5_4:51483845-51483864 | None:intergenic | 50.0% | |
| GGTGCATTTAGGTCCTTGCT+TGG | - | chr5_4:51483845-51483864 | Msa0856660:intron | 50.0% | |
| GGCATTCTTTGTGCCAAGCA+AGG | + | chr5_4:51483861-51483880 | None:intergenic | 50.0% | |
| ACAATGCACCTGCAGCTTCA+CGG | + | chr5_4:51484019-51484038 | None:intergenic | 50.0% | |
| CTTCCTGCTTCGTTTGCAAG+AGG | - | chr5_4:51484673-51484692 | Msa0856660:intron | 50.0% | |
| AACCCTCTTGCAAACGAAGC+AGG | + | chr5_4:51484679-51484698 | None:intergenic | 50.0% | |
| GCTTCGTTTGCAAGAGGGTT+TGG | - | chr5_4:51484679-51484698 | Msa0856660:intron | 50.0% | |
| ACGTGATCCGAACCAGAATG+AGG | - | chr5_4:51484729-51484748 | Msa0856660:intron | 50.0% | |
| TCCGAACCAGAATGAGGTTG+AGG | - | chr5_4:51484735-51484754 | Msa0856660:intron | 50.0% | |
| CAGCTACCTCAACCTCATTC+TGG | + | chr5_4:51484744-51484763 | None:intergenic | 50.0% | |
| TGCAACAACATTCTCCGTGG+AGG | + | chr5_4:51484938-51484957 | None:intergenic | 50.0% | |
| ACAGCTGCGGACATTTCTTC+TGG | - | chr5_4:51485058-51485077 | Msa0856660:intron | 50.0% | |
| CACGGGAGCAGCTAACAATA+AGG | - | chr5_4:51485306-51485325 | Msa0856660:intron | 50.0% | |
| TTGCCTCCATCTACAGGCAT+TGG | - | chr5_4:51485373-51485392 | Msa0856660:intron | 50.0% | |
| GCAACCACCAGCCAGATCAT+AGG | + | chr5_4:51482699-51482718 | None:intergenic | 55.0% | |
| CTGGCTGGTGGTTGCAATTG+TGG | - | chr5_4:51482704-51482723 | Msa0856660:three_prime_UTR | 55.0% | |
| ACCTGCAGCTTCACGGTCTT+TGG | + | chr5_4:51484012-51484031 | None:intergenic | 55.0% | |
| !! | GTGGGATTTTGGGTGGTGCT+TGG | - | chr5_4:51484825-51484844 | Msa0856660:intron | 55.0% |
| CTCCGTGGAGGATTGAAGCA+AGG | + | chr5_4:51484926-51484945 | None:intergenic | 55.0% | |
| ! | GTGCAACGCCCGTAAGTTGA+TGG | - | chr5_4:51485258-51485277 | Msa0856660:intron | 55.0% |
| TCGCCAATGCCTGTAGATGG+AGG | + | chr5_4:51485379-51485398 | None:intergenic | 55.0% | |
| !! | CCTTAGGGTTTTGGCGCCCA+TGG | + | chr5_4:51483679-51483698 | None:intergenic | 60.0% |
| CCATGGGCGCCAAAACCCTA+AGG | - | chr5_4:51483676-51483695 | Msa0856660:intron | 60.0% | |
| GCCAAAGACCGTGAAGCTGC+AGG | - | chr5_4:51484008-51484027 | Msa0856660:intron | 60.0% | |
| ! | TTACGGGCGTTGCACAGAGC+TGG | + | chr5_4:51485253-51485272 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 51482031 | 51485568 | 51482031 | ID=Msa0856660;Name=Msa0856660 |
| chr5_4 | mRNA | 51482031 | 51485568 | 51482031 | ID=Msa0856660-mRNA-1;Parent=Msa0856660;Name=Msa0856660-mRNA-1;_AED=0.25;_eAED=0.26;_QI=31|0.33|0.25|1|0.33|0.25|4|770|79 |
| chr5_4 | exon | 51482031 | 51482938 | 51482031 | ID=Msa0856660-mRNA-1:exon:16079;Parent=Msa0856660-mRNA-1 |
| chr5_4 | exon | 51483207 | 51483292 | 51483207 | ID=Msa0856660-mRNA-1:exon:16078;Parent=Msa0856660-mRNA-1 |
| chr5_4 | exon | 51484544 | 51484581 | 51484544 | ID=Msa0856660-mRNA-1:exon:16077;Parent=Msa0856660-mRNA-1 |
| chr5_4 | exon | 51485560 | 51485568 | 51485560 | ID=Msa0856660-mRNA-1:exon:16076;Parent=Msa0856660-mRNA-1 |
| chr5_4 | five_prime_UTR | 51485560 | 51485568 | 51485560 | ID=Msa0856660-mRNA-1:five_prime_utr;Parent=Msa0856660-mRNA-1 |
| chr5_4 | five_prime_UTR | 51484560 | 51484581 | 51484560 | ID=Msa0856660-mRNA-1:five_prime_utr;Parent=Msa0856660-mRNA-1 |
| chr5_4 | CDS | 51484544 | 51484559 | 51484544 | ID=Msa0856660-mRNA-1:cds;Parent=Msa0856660-mRNA-1 |
| chr5_4 | CDS | 51483207 | 51483292 | 51483207 | ID=Msa0856660-mRNA-1:cds;Parent=Msa0856660-mRNA-1 |
| chr5_4 | CDS | 51482801 | 51482938 | 51482801 | ID=Msa0856660-mRNA-1:cds;Parent=Msa0856660-mRNA-1 |
| chr5_4 | three_prime_UTR | 51482031 | 51482800 | 51482031 | ID=Msa0856660-mRNA-1:three_prime_utr;Parent=Msa0856660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
