Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816210 | KEH26597.1 | 46.014 | 276 | 99 | 3 | 27 | 252 | 23 | 298 | 1.19e-75 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816210 | A0A072UAC5 | 46.014 | 276 | 99 | 3 | 27 | 252 | 23 | 298 | 5.68e-76 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661650 | Msa0816210 | 0.800125 | 1.668762e-48 | -8.615850e-47 |
| Msa0778710 | Msa0816210 | 0.815576 | 8.611766e-52 | -8.615850e-47 |
| Msa0816210 | Msa0856660 | 0.862764 | 4.020732e-64 | -8.615850e-47 |
| Msa0816210 | Msa0876190 | 0.807693 | 4.462299e-50 | -8.615850e-47 |
| Msa0816210 | Msa0939250 | 0.805941 | 1.046652e-49 | -8.615850e-47 |
| Msa0816210 | Msa1075650 | 0.804096 | 2.544523e-49 | -8.615850e-47 |
| Msa0816210 | Msa1104560 | 0.803556 | 3.294502e-49 | -8.615850e-47 |
| Msa0816210 | Msa1121490 | 0.804033 | 2.623359e-49 | -8.615850e-47 |
| Msa0816210 | Msa1211230 | -0.810418 | 1.163978e-50 | -8.615850e-47 |
| Msa0816210 | Msa1243870 | 0.803578 | 3.260904e-49 | -8.615850e-47 |
| Msa0816210 | Msa1394380 | 0.811410 | 7.101001e-51 | -8.615850e-47 |
| Msa0816210 | Msa1440560 | 0.800691 | 1.279767e-48 | -8.615850e-47 |
| Msa0816210 | Msa1466540 | 0.802426 | 5.643332e-49 | -8.615850e-47 |
| Msa0217700 | Msa0816210 | 0.819315 | 1.238849e-52 | -8.615850e-47 |
| Msa0467490 | Msa0816210 | 0.802789 | 4.749502e-49 | -8.615850e-47 |
| Msa0358890 | Msa0816210 | 0.801669 | 8.072232e-49 | -8.615850e-47 |
| Msa0363790 | Msa0816210 | 0.814760 | 1.307571e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816210 | MtrunA17_Chr7g0232921 | 48.120 | 133 | 43 | 3 | 31 | 163 | 27 | 133 | 1.68e-35 | 125 |
| Msa0816210 | MtrunA17_Chr8g0366201 | 65.591 | 93 | 29 | 2 | 162 | 252 | 11 | 102 | 1.82e-34 | 120 |
| Msa0816210 | MtrunA17_Chr4g0042631 | 44.134 | 179 | 53 | 4 | 2 | 180 | 14 | 145 | 2.79e-33 | 119 |
| Msa0816210 | MtrunA17_Chr4g0023021 | 63.014 | 73 | 27 | 0 | 180 | 252 | 33 | 105 | 1.05e-27 | 103 |
| Msa0816210 | MtrunA17_Chr6g0473661 | 26.971 | 241 | 139 | 6 | 51 | 254 | 246 | 486 | 2.68e-16 | 78.2 |
| Msa0816210 | MtrunA17_Chr6g0473661 | 31.288 | 163 | 98 | 3 | 80 | 235 | 30 | 185 | 1.62e-11 | 63.9 |
| Msa0816210 | MtrunA17_Chr8g0365871 | 53.521 | 71 | 28 | 1 | 155 | 225 | 22 | 87 | 2.81e-16 | 72.4 |
| Msa0816210 | MtrunA17_Chr1g0193281 | 29.787 | 141 | 94 | 1 | 30 | 165 | 20 | 160 | 2.76e-15 | 72.4 |
| Msa0816210 | MtrunA17_Chr1g0206471 | 22.581 | 248 | 144 | 4 | 32 | 231 | 23 | 270 | 7.88e-15 | 72.4 |
| Msa0816210 | MtrunA17_Chr4g0054601 | 34.000 | 100 | 61 | 1 | 74 | 168 | 1 | 100 | 3.60e-14 | 67.4 |
| Msa0816210 | MtrunA17_Chr1g0173661 | 40.789 | 76 | 45 | 0 | 180 | 255 | 11 | 86 | 5.32e-13 | 63.5 |
| Msa0816210 | MtrunA17_Chr6g0473651 | 31.579 | 133 | 78 | 5 | 56 | 176 | 221 | 352 | 1.57e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAGCTATTTGGAAAT+TGG | 0.198762 | 5_3:+50403593 | Msa0816210:intron |
| TATTATAATCAGAAGCTATT+TGG | 0.227740 | 5_3:+50403586 | Msa0816210:intron |
| ACAGCTGCGGACATTTCTTC+TGG | 0.305832 | 5_3:+50403476 | Msa0816210:CDS |
| TCTACAGGCATTGGCGAAAA+TGG | 0.313793 | 5_3:+50403801 | Msa0816210:CDS |
| GCTTCGTTTGCAAGAGGGTT+TGG | 0.334355 | 5_3:+50403096 | Msa0816210:CDS |
| AGCTATTTGGAAATTGGTTA+TGG | 0.340909 | 5_3:+50403599 | Msa0816210:CDS |
| TTGTTCTTGCCATCAACTTA+CGG | 0.354553 | 5_3:-50403686 | None:intergenic |
| TGTTCTTGCCATCAACTTAC+GGG | 0.358089 | 5_3:-50403685 | None:intergenic |
| AGATTGACAGAGTTGTTAGA+AGG | 0.366557 | 5_3:+50402739 | Msa0816210:CDS |
| CAGCTACCTCAACCTCATTC+TGG | 0.392976 | 5_3:-50403158 | None:intergenic |
| AAATCTGCATGGAGAGGAAT+TGG | 0.394092 | 5_3:+50403313 | Msa0816210:CDS |
| GTGCAACGCCCGTAAGTTGA+TGG | 0.418678 | 5_3:+50403677 | Msa0816210:CDS |
| ACAAAATTGCCTCCATCTAC+AGG | 0.450698 | 5_3:+50403786 | Msa0816210:CDS |
| CTAACAACTCTGTCAATCTC+TGG | 0.451922 | 5_3:-50402735 | None:intergenic |
| TACCGAGTTTCTGTACTCAT+TGG | 0.463003 | 5_3:-50403387 | None:intergenic |
| ACCTCAACCTCATTCTGGTT+CGG | 0.468186 | 5_3:-50403153 | None:intergenic |
| CACGGGAGCAGCTAACAATA+AGG | 0.482265 | 5_3:+50403725 | Msa0816210:CDS |
| GATTGACAGAGTTGTTAGAA+GGG | 0.495391 | 5_3:+50402740 | Msa0816210:CDS |
| CTTCCTGCTTCGTTTGCAAG+AGG | 0.503520 | 5_3:+50403090 | Msa0816210:CDS |
| TTTGTCTTCAACACCAACAT+TGG | 0.503993 | 5_3:-50403768 | None:intergenic |
| TTACGGGCGTTGCACAGAGC+TGG | 0.507146 | 5_3:-50403669 | None:intergenic |
| TTGCCTCCATCTACAGGCAT+TGG | 0.510059 | 5_3:+50403792 | Msa0816210:CDS |
| AACCCTCTTGCAAACGAAGC+AGG | 0.515959 | 5_3:-50403093 | None:intergenic |
| AGAATGTTGTTGCAGAATCA+AGG | 0.516563 | 5_3:+50403362 | Msa0816210:CDS |
| GTCTTCAACACCAACATTGG+AGG | 0.518617 | 5_3:-50403765 | None:intergenic |
| AAGATCAAACTTGGTGTCAC+GGG | 0.530779 | 5_3:+50403708 | Msa0816210:CDS |
| TTCCTGCTTCGTTTGCAAGA+GGG | 0.541204 | 5_3:+50403091 | Msa0816210:CDS |
| TCCGAACCAGAATGAGGTTG+AGG | 0.555820 | 5_3:+50403152 | Msa0816210:CDS |
| TCTTTGTGCACCTCCAATGT+TGG | 0.556229 | 5_3:+50403755 | Msa0816210:CDS |
| TTGACAGTTGAAGGTAATGC+TGG | 0.556688 | 5_3:+50402711 | Msa0816210:intron |
| GCAAGAACAAAGATCAAACT+TGG | 0.571276 | 5_3:+50403699 | Msa0816210:CDS |
| AAAGATCAAACTTGGTGTCA+CGG | 0.572250 | 5_3:+50403707 | Msa0816210:CDS |
| ATCCTTGCTTCAATCCTCCA+CGG | 0.604870 | 5_3:+50403339 | Msa0816210:CDS |
| CTCCGTGGAGGATTGAAGCA+AGG | 0.608080 | 5_3:-50403341 | None:intergenic |
| TCGCCAATGCCTGTAGATGG+AGG | 0.609903 | 5_3:-50403795 | None:intergenic |
| ACGTGATCCGAACCAGAATG+AGG | 0.623333 | 5_3:+50403146 | Msa0816210:CDS |
| TGTTTGTGTAGCGTAAGGGA+AGG | 0.626170 | 5_3:+50403067 | Msa0816210:intron |
| TGCCAATGAGTACAGAAACT+CGG | 0.640910 | 5_3:+50403385 | Msa0816210:CDS |
| TTCTGCAACAACATTCTCCG+TGG | 0.648161 | 5_3:-50403356 | None:intergenic |
| TGCAACAACATTCTCCGTGG+AGG | 0.648705 | 5_3:-50403353 | None:intergenic |
| CATGTCATACTCCATGTGGA+AGG | 0.657614 | 5_3:-50402781 | None:intergenic |
| TAACTTGAGAACCTTCCACA+TGG | 0.662862 | 5_3:+50402770 | Msa0816210:CDS |
| GGTTAGAAATCTGCATGGAG+AGG | 0.664054 | 5_3:+50403307 | Msa0816210:CDS |
| AGCACATGTCATACTCCATG+TGG | 0.685350 | 5_3:-50402785 | None:intergenic |
| TGAGTGTTTGTGTAGCGTAA+GGG | 0.688220 | 5_3:+50403063 | Msa0816210:intron |
| TGTCAAGGAGTTAACAGCTG+CGG | 0.688752 | 5_3:+50403463 | Msa0816210:intron |
| ATGGTGGTTAGAAATCTGCA+TGG | 0.704267 | 5_3:+50403302 | Msa0816210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTATAATTT+AGG | + | chr5_3:50401648-50401667 | Msa0816210:intron | 0.0% |
| !!! | ATTTTTTACTATTTATGATA+TGG | + | chr5_3:50400887-50400906 | Msa0816210:intron | 10.0% |
| !!! | AGAATTTTTTTAAGAAAAAA+AGG | + | chr5_3:50401856-50401875 | Msa0816210:intron | 10.0% |
| !! | AGTTAAACAAAATACAAAAT+GGG | - | chr5_3:50400732-50400751 | None:intergenic | 15.0% |
| !! | AAGTTAAACAAAATACAAAA+TGG | - | chr5_3:50400733-50400752 | None:intergenic | 15.0% |
| !! | TTCAATTAATATATTATTGG+AGG | + | chr5_3:50400767-50400786 | Msa0816210:intron | 15.0% |
| !! | TCAATTAATATATTATTGGA+GGG | + | chr5_3:50400768-50400787 | Msa0816210:intron | 15.0% |
| !! | CGCTTCAATTAATATATTAT+TGG | + | chr5_3:50400764-50400783 | Msa0816210:intron | 20.0% |
| !! | TGTTATCACAATTACATTAT+TGG | - | chr5_3:50400951-50400970 | None:intergenic | 20.0% |
| !! | TTGTGATAACAATAATGTAT+TGG | + | chr5_3:50400960-50400979 | Msa0816210:intron | 20.0% |
| !! | TAAGGATACATGTTATATAT+GGG | - | chr5_3:50401023-50401042 | None:intergenic | 20.0% |
| !! | TTAAGGATACATGTTATATA+TGG | - | chr5_3:50401024-50401043 | None:intergenic | 20.0% |
| !! | ATATGAACATCAAATAAGAT+TGG | - | chr5_3:50401500-50401519 | None:intergenic | 20.0% |
| !! | TTTGTCACTAATAATAGAAA+AGG | - | chr5_3:50401904-50401923 | None:intergenic | 20.0% |
| !! | ACTCATTTAAATAGAAATGA+GGG | - | chr5_3:50402314-50402333 | None:intergenic | 20.0% |
| !!! | TATGTTGTTTCTATTGTATT+TGG | + | chr5_3:50402649-50402668 | Msa0816210:intron | 20.0% |
| !!! | TTAAAGCAATCATCTTATTT+GGG | + | chr5_3:50402672-50402691 | Msa0816210:intron | 20.0% |
| !! | AGATCATAATATACATCAAA+TGG | - | chr5_3:50402979-50402998 | None:intergenic | 20.0% |
| !!! | AACATAAAAGAAAAAGTGTA+AGG | - | chr5_3:50403519-50403538 | None:intergenic | 20.0% |
| !! | TATTATAATCAGAAGCTATT+TGG | + | chr5_3:50403586-50403605 | Msa0816210:intron | 20.0% |
| !! | AGAAATAGAAAGAGCATAAA+AGG | - | chr5_3:50400706-50400725 | None:intergenic | 25.0% |
| ! | ATTAATATATTATTGGAGGG+TGG | + | chr5_3:50400771-50400790 | Msa0816210:intron | 25.0% |
| !! | TTAAAGATGAACAGTGATTT+TGG | + | chr5_3:50400836-50400855 | Msa0816210:intron | 25.0% |
| ! | GATATGGTTATTATTTGTGT+AGG | + | chr5_3:50400903-50400922 | Msa0816210:intron | 25.0% |
| ! | TTGCAATTCAACATACATTA+AGG | - | chr5_3:50401041-50401060 | None:intergenic | 25.0% |
| !! | TTCTTAAATCATCCTTTTCT+TGG | + | chr5_3:50401677-50401696 | Msa0816210:intron | 25.0% |
| ! | AATTCAAAAACAAATCGTGT+AGG | + | chr5_3:50401831-50401850 | Msa0816210:CDS | 25.0% |
| ! | TTTCACATTTCAAAACCTTA+GGG | - | chr5_3:50402111-50402130 | None:intergenic | 25.0% |
| !! | TTTTCACATTTCAAAACCTT+AGG | - | chr5_3:50402112-50402131 | None:intergenic | 25.0% |
| ! | CACTCATTTAAATAGAAATG+AGG | - | chr5_3:50402315-50402334 | None:intergenic | 25.0% |
| ! | CTCATTTCTATTTAAATGAG+TGG | + | chr5_3:50402313-50402332 | Msa0816210:intron | 25.0% |
| !!! | ATAAGATGATTTTAACTGCA+TGG | - | chr5_3:50402610-50402629 | None:intergenic | 25.0% |
| ! | GTTAAAGCAATCATCTTATT+TGG | + | chr5_3:50402671-50402690 | Msa0816210:intron | 25.0% |
| !! | TCCCTTATTTATTCCATATT+TGG | + | chr5_3:50402920-50402939 | Msa0816210:intron | 25.0% |
| ! | GCCAAATATGGAATAAATAA+GGG | - | chr5_3:50402924-50402943 | None:intergenic | 25.0% |
| ! | AGCCAAATATGGAATAAATA+AGG | - | chr5_3:50402925-50402944 | None:intergenic | 25.0% |
| ! | TTATTTATTCCATATTTGGC+TGG | + | chr5_3:50402924-50402943 | Msa0816210:intron | 25.0% |
| !!! | ACATTTTTAAAGAGCTTTTG+TGG | + | chr5_3:50403224-50403243 | Msa0816210:intron | 25.0% |
| !!! | CATTTTTAAAGAGCTTTTGT+GGG | + | chr5_3:50403225-50403244 | Msa0816210:intron | 25.0% |
| ! | ATTGTGTGATAGAAAAAAGT+GGG | - | chr5_3:50403443-50403462 | None:intergenic | 25.0% |
| ! | AATTGTGTGATAGAAAAAAG+TGG | - | chr5_3:50403444-50403463 | None:intergenic | 25.0% |
| !!! | ACACTTTTTCTTTTATGTTG+TGG | + | chr5_3:50403520-50403539 | Msa0816210:intron | 25.0% |
| ATCTTTCAATGACAACTTTC+TGG | + | chr5_3:50400665-50400684 | Msa0816210:intron | 30.0% | |
| ! | AAAGAGCATAAAAGGTATAG+AGG | - | chr5_3:50400698-50400717 | None:intergenic | 30.0% |
| !! | ATTTTGGTCTTCTGCAATTA+AGG | + | chr5_3:50400852-50400871 | Msa0816210:intron | 30.0% |
| !! | TTTTGGTCTTCTGCAATTAA+GGG | + | chr5_3:50400853-50400872 | Msa0816210:intron | 30.0% |
| !! | ATTTGTGTAGGTTTGATTTG+TGG | + | chr5_3:50400915-50400934 | Msa0816210:intron | 30.0% |
| ! | TGTTCTTTCCTTTTCATATC+AGG | + | chr5_3:50401086-50401105 | Msa0816210:intron | 30.0% |
| TTCTTCAACCTGATATGAAA+AGG | - | chr5_3:50401097-50401116 | None:intergenic | 30.0% | |
| ! | AGTGCAATGTTGATTGATTT+GGG | + | chr5_3:50401450-50401469 | Msa0816210:intron | 30.0% |
| TAACTATATAGTCCCTTAAC+TGG | + | chr5_3:50401541-50401560 | Msa0816210:intron | 30.0% | |
| AGGAACAAATAACTATAAGC+AGG | - | chr5_3:50401709-50401728 | None:intergenic | 30.0% | |
| CCTAATGATACTTCTTTAAG+AGG | - | chr5_3:50401729-50401748 | None:intergenic | 30.0% | |
| !! | CCTCTTAAAGAAGTATCATT+AGG | + | chr5_3:50401726-50401745 | Msa0816210:intron | 30.0% |
| AAAAACTGAACTTCATTTGG+CGG | - | chr5_3:50401776-50401795 | None:intergenic | 30.0% | |
| CCAAAAAACTGAACTTCATT+TGG | - | chr5_3:50401779-50401798 | None:intergenic | 30.0% | |
| !!! | CCAAATGAAGTTCAGTTTTT+TGG | + | chr5_3:50401776-50401795 | Msa0816210:CDS | 30.0% |
| ATTGTGAAAGATGTGTTCAA+TGG | - | chr5_3:50401931-50401950 | None:intergenic | 30.0% | |
| !! | CAATCATTTTTAACTCGACT+AGG | + | chr5_3:50401947-50401966 | Msa0816210:intron | 30.0% |
| TCAATTCAAAGTGAATTCCA+TGG | + | chr5_3:50401979-50401998 | Msa0816210:intron | 30.0% | |
| CAATTCAAAGTGAATTCCAT+GGG | + | chr5_3:50401980-50401999 | Msa0816210:intron | 30.0% | |
| AATCAAGATAAGATATCCCA+TGG | - | chr5_3:50401999-50402018 | None:intergenic | 30.0% | |
| AAAATGTAAAGGCTTGGATA+GGG | - | chr5_3:50402061-50402080 | None:intergenic | 30.0% | |
| TAAAATGTAAAGGCTTGGAT+AGG | - | chr5_3:50402062-50402081 | None:intergenic | 30.0% | |
| ACTTGCAGCTTAAAATGTAA+AGG | - | chr5_3:50402072-50402091 | None:intergenic | 30.0% | |
| ! | ATTTCAAAACCTTAGGGTTT+TGG | - | chr5_3:50402105-50402124 | None:intergenic | 30.0% |
| AAATAGAAATGAGGGTTAGA+AGG | - | chr5_3:50402306-50402325 | None:intergenic | 30.0% | |
| AGGATGATGTTGATGTTATA+TGG | - | chr5_3:50402353-50402372 | None:intergenic | 30.0% | |
| AATTGGCTAATCATTCCATT+GGG | - | chr5_3:50402394-50402413 | None:intergenic | 30.0% | |
| AAATTGGCTAATCATTCCAT+TGG | - | chr5_3:50402395-50402414 | None:intergenic | 30.0% | |
| TTTGGCAAACATGGTAAAAT+TGG | - | chr5_3:50402411-50402430 | None:intergenic | 30.0% | |
| TTGATTTACCATACCTTTCA+TGG | - | chr5_3:50402462-50402481 | None:intergenic | 30.0% | |
| CACCTGAATTTGTATTTGAT+GGG | + | chr5_3:50402550-50402569 | Msa0816210:intron | 30.0% | |
| TTCCCATCAAATACAAATTC+AGG | - | chr5_3:50402555-50402574 | None:intergenic | 30.0% | |
| TTCCAATAAACTAAACAGCA+TGG | - | chr5_3:50402861-50402880 | None:intergenic | 30.0% | |
| TCCATTATAGCAACTAACTA+AGG | - | chr5_3:50402952-50402971 | None:intergenic | 30.0% | |
| TAGCTGTTGAAAAAGAAGAA+CGG | + | chr5_3:50403175-50403194 | Msa0816210:CDS | 30.0% | |
| !!! | GGAAAGGTTTATTTTACTGA+TGG | + | chr5_3:50403197-50403216 | Msa0816210:CDS | 30.0% |
| !!! | AGGTTTATTTTACTGATGGT+TGG | + | chr5_3:50403201-50403220 | Msa0816210:intron | 30.0% |
| ! | AAATCGACATCTTTTTCTGA+TGG | + | chr5_3:50403283-50403302 | Msa0816210:CDS | 30.0% |
| TTTCTATCACACAATTGTCA+AGG | + | chr5_3:50403448-50403467 | Msa0816210:intron | 30.0% | |
| AAAAATGCATCTCAAGTTAG+AGG | - | chr5_3:50403565-50403584 | None:intergenic | 30.0% | |
| ATCAGAAGCTATTTGGAAAT+TGG | + | chr5_3:50403593-50403612 | Msa0816210:intron | 30.0% | |
| AGCTATTTGGAAATTGGTTA+TGG | + | chr5_3:50403599-50403618 | Msa0816210:CDS | 30.0% | |
| TTCACTCAGATCTGTATATG+AGG | + | chr5_3:50400468-50400487 | Msa0816210:intron | 35.0% | |
| TCACTCAGATCTGTATATGA+GGG | + | chr5_3:50400469-50400488 | Msa0816210:intron | 35.0% | |
| ATTCATTCAGAATCAAGGAC+TGG | - | chr5_3:50400625-50400644 | None:intergenic | 35.0% | |
| AGTCCTTGATTCTGAATGAA+TGG | + | chr5_3:50400624-50400643 | Msa0816210:intron | 35.0% | |
| CTTCCATTCATTCAGAATCA+AGG | - | chr5_3:50400630-50400649 | None:intergenic | 35.0% | |
| TCTGAATGAATGGAAGATGA+AGG | + | chr5_3:50400634-50400653 | Msa0816210:intron | 35.0% | |
| ! | ATTGGTTGGATTGGATGATT+CGG | + | chr5_3:50400813-50400832 | Msa0816210:intron | 35.0% |
| TATCGCTCTATTGTTGAATG+AGG | - | chr5_3:50401173-50401192 | None:intergenic | 35.0% | |
| ! | CTGAATGACGGAAATTGTAA+GGG | - | chr5_3:50401326-50401345 | None:intergenic | 35.0% |
| ! | ACTGAATGACGGAAATTGTA+AGG | - | chr5_3:50401327-50401346 | None:intergenic | 35.0% |
| CAATATAATCAACTGCAGCA+AGG | - | chr5_3:50401404-50401423 | None:intergenic | 35.0% | |
| ! | CAGTGCAATGTTGATTGATT+TGG | + | chr5_3:50401449-50401468 | Msa0816210:intron | 35.0% |
| ! | TCTGAGATACATCCAGTTAA+GGG | - | chr5_3:50401556-50401575 | None:intergenic | 35.0% |
| !! | TTCTGAGATACATCCAGTTA+AGG | - | chr5_3:50401557-50401576 | None:intergenic | 35.0% |
| AACAAATCCTGCAAATCAAG+AGG | - | chr5_3:50401752-50401771 | None:intergenic | 35.0% | |
| !!! | TTCAGTTTTTTGGCTATGCA+AGG | + | chr5_3:50401786-50401805 | Msa0816210:CDS | 35.0% |
| CAGCTTAAAATGTAAAGGCT+TGG | - | chr5_3:50402067-50402086 | None:intergenic | 35.0% | |
| ! | ATTTTAAGCTGCAAGTTCCA+TGG | + | chr5_3:50402076-50402095 | Msa0816210:intron | 35.0% |
| ! | TTTTAAGCTGCAAGTTCCAT+GGG | + | chr5_3:50402077-50402096 | Msa0816210:intron | 35.0% |
| GACATAGTGTATGAACAGAA+GGG | - | chr5_3:50402146-50402165 | None:intergenic | 35.0% | |
| AGACATAGTGTATGAACAGA+AGG | - | chr5_3:50402147-50402166 | None:intergenic | 35.0% | |
| ! | AGCACACGTTTTGTAGATAT+AGG | + | chr5_3:50402226-50402245 | Msa0816210:intron | 35.0% |
| ATTACCATCAGAAATCCCAA+TGG | + | chr5_3:50402376-50402395 | Msa0816210:intron | 35.0% | |
| ATTGTTGTCCATGAAAGGTA+TGG | + | chr5_3:50402451-50402470 | Msa0816210:intron | 35.0% | |
| AGGTGGCATCAAAAACATTA+TGG | - | chr5_3:50402535-50402554 | None:intergenic | 35.0% | |
| CCATCAAATACAAATTCAGG+TGG | - | chr5_3:50402552-50402571 | None:intergenic | 35.0% | |
| CCACCTGAATTTGTATTTGA+TGG | + | chr5_3:50402549-50402568 | Msa0816210:intron | 35.0% | |
| AGATTGACAGAGTTGTTAGA+AGG | + | chr5_3:50402739-50402758 | Msa0816210:CDS | 35.0% | |
| GATTGACAGAGTTGTTAGAA+GGG | + | chr5_3:50402740-50402759 | Msa0816210:CDS | 35.0% | |
| ! | TGCCATGCTGTTTAGTTTAT+TGG | + | chr5_3:50402856-50402875 | Msa0816210:intron | 35.0% |
| AAGGGATTTATTGACCTTCA+AGG | - | chr5_3:50402906-50402925 | None:intergenic | 35.0% | |
| GCCTTAGTTAGTTGCTATAA+TGG | + | chr5_3:50402948-50402967 | Msa0816210:intron | 35.0% | |
| TCATCAGTGAGCAAATACTT+TGG | - | chr5_3:50403046-50403065 | None:intergenic | 35.0% | |
| AGCTGTTGAAAAAGAAGAAC+GGG | + | chr5_3:50403176-50403195 | Msa0816210:CDS | 35.0% | |
| TTGAAAAAGAAGAACGGGAA+AGG | + | chr5_3:50403181-50403200 | Msa0816210:CDS | 35.0% | |
| ! | AAAGAGCTTTTGTGGGATTT+TGG | + | chr5_3:50403232-50403251 | Msa0816210:intron | 35.0% |
| ! | AAGAGCTTTTGTGGGATTTT+GGG | + | chr5_3:50403233-50403252 | Msa0816210:intron | 35.0% |
| AGAATGTTGTTGCAGAATCA+AGG | + | chr5_3:50403362-50403381 | Msa0816210:CDS | 35.0% | |
| GAAAAAAGTGGGAGGAAAAA+TGG | - | chr5_3:50403432-50403451 | None:intergenic | 35.0% | |
| ! | GATTTGTCTTGCGTATTTTC+TGG | + | chr5_3:50403639-50403658 | Msa0816210:CDS | 35.0% |
| TTGTTCTTGCCATCAACTTA+CGG | - | chr5_3:50403689-50403708 | None:intergenic | 35.0% | |
| GCAAGAACAAAGATCAAACT+TGG | + | chr5_3:50403699-50403718 | Msa0816210:CDS | 35.0% | |
| !! | AAAGATCAAACTTGGTGTCA+CGG | + | chr5_3:50403707-50403726 | Msa0816210:CDS | 35.0% |
| TTTGTCTTCAACACCAACAT+TGG | - | chr5_3:50403771-50403790 | None:intergenic | 35.0% | |
| ATTGCATCAACTCCCAATCT+TGG | + | chr5_3:50400551-50400570 | Msa0816210:intron | 40.0% | |
| ATGTTAAATCCAGCAGATGG+AGG | - | chr5_3:50400581-50400600 | None:intergenic | 40.0% | |
| CCAATGTTAAATCCAGCAGA+TGG | - | chr5_3:50400584-50400603 | None:intergenic | 40.0% | |
| CCATCTGCTGGATTTAACAT+TGG | + | chr5_3:50400581-50400600 | Msa0816210:intron | 40.0% | |
| ATATTATTGGAGGGTGGATG+AGG | + | chr5_3:50400777-50400796 | Msa0816210:intron | 40.0% | |
| CCAATCCAACCAATTCAAAC+TGG | - | chr5_3:50400807-50400826 | None:intergenic | 40.0% | |
| CCAGTTTGAATTGGTTGGAT+TGG | + | chr5_3:50400804-50400823 | Msa0816210:intron | 40.0% | |
| ATATGGGAGAGTGAGAAACA+TGG | - | chr5_3:50401007-50401026 | None:intergenic | 40.0% | |
| AGGTTGAAGAACCTATGATC+TGG | + | chr5_3:50401106-50401125 | Msa0816210:intron | 40.0% | |
| TCAAAACCTGCACTGAATGA+CGG | - | chr5_3:50401338-50401357 | None:intergenic | 40.0% | |
| AGCAGGTAATCTCCAAGAAA+AGG | - | chr5_3:50401692-50401711 | None:intergenic | 40.0% | |
| GCTTGGATAGGGTTTATCTA+GGG | - | chr5_3:50402050-50402069 | None:intergenic | 40.0% | |
| ! | CACTATGTCTTGCCATTTCT+TGG | + | chr5_3:50402157-50402176 | Msa0816210:intron | 40.0% |
| GATATAGGCATCATCATACC+TGG | + | chr5_3:50402241-50402260 | Msa0816210:intron | 40.0% | |
| TCATCATACCTGGTGCATTT+AGG | + | chr5_3:50402251-50402270 | Msa0816210:intron | 40.0% | |
| AATGAGGGTTAGAAGGAAGA+TGG | - | chr5_3:50402299-50402318 | None:intergenic | 40.0% | |
| ! | GGATTTCTGATGGTAATGTG+AGG | - | chr5_3:50402373-50402392 | None:intergenic | 40.0% |
| CATTCCATTGGGATTTCTGA+TGG | - | chr5_3:50402383-50402402 | None:intergenic | 40.0% | |
| CATTACCTTCAACTGTCAAC+AGG | - | chr5_3:50402710-50402729 | None:intergenic | 40.0% | |
| TTGACAGTTGAAGGTAATGC+TGG | + | chr5_3:50402711-50402730 | Msa0816210:intron | 40.0% | |
| CTAACAACTCTGTCAATCTC+TGG | - | chr5_3:50402738-50402757 | None:intergenic | 40.0% | |
| TAACTTGAGAACCTTCCACA+TGG | + | chr5_3:50402770-50402789 | Msa0816210:CDS | 40.0% | |
| ATGAGTGTTTGTGTAGCGTA+AGG | + | chr5_3:50403062-50403081 | Msa0816210:intron | 40.0% | |
| TGAGTGTTTGTGTAGCGTAA+GGG | + | chr5_3:50403063-50403082 | Msa0816210:intron | 40.0% | |
| ! | TCGACATCTTTTTCTGATGG+TGG | + | chr5_3:50403286-50403305 | Msa0816210:CDS | 40.0% |
| ATGGTGGTTAGAAATCTGCA+TGG | + | chr5_3:50403302-50403321 | Msa0816210:CDS | 40.0% | |
| AAATCTGCATGGAGAGGAAT+TGG | + | chr5_3:50403313-50403332 | Msa0816210:CDS | 40.0% | |
| TGCCAATGAGTACAGAAACT+CGG | + | chr5_3:50403385-50403404 | Msa0816210:CDS | 40.0% | |
| TACCGAGTTTCTGTACTCAT+TGG | - | chr5_3:50403390-50403409 | None:intergenic | 40.0% | |
| AGAAACTCGGTAGCTTGATA+TGG | + | chr5_3:50403398-50403417 | Msa0816210:intron | 40.0% | |
| GTGTGATAGAAAAAAGTGGG+AGG | - | chr5_3:50403440-50403459 | None:intergenic | 40.0% | |
| GTGGTTAGATATACGTGTGT+TGG | + | chr5_3:50403539-50403558 | Msa0816210:intron | 40.0% | |
| TGTTCTTGCCATCAACTTAC+GGG | - | chr5_3:50403688-50403707 | None:intergenic | 40.0% | |
| !! | AAGATCAAACTTGGTGTCAC+GGG | + | chr5_3:50403708-50403727 | Msa0816210:CDS | 40.0% |
| ACAAAATTGCCTCCATCTAC+AGG | + | chr5_3:50403786-50403805 | Msa0816210:CDS | 40.0% | |
| GATGGAGGCAAACCAAGATT+GGG | - | chr5_3:50400566-50400585 | None:intergenic | 45.0% | |
| AGATGGAGGCAAACCAAGAT+TGG | - | chr5_3:50400567-50400586 | None:intergenic | 45.0% | |
| TGAGGCTGACCAGTTTGAAT+TGG | + | chr5_3:50400795-50400814 | Msa0816210:intron | 45.0% | |
| GCTGACCAGTTTGAATTGGT+TGG | + | chr5_3:50400799-50400818 | Msa0816210:intron | 45.0% | |
| TGAAGAACCTATGATCTGGC+TGG | + | chr5_3:50401110-50401129 | Msa0816210:intron | 45.0% | |
| GAGGCTTGAACAACAGTGTT+GGG | - | chr5_3:50401154-50401173 | None:intergenic | 45.0% | |
| TGAGGCTTGAACAACAGTGT+TGG | - | chr5_3:50401155-50401174 | None:intergenic | 45.0% | |
| CAATTTCCGTCATTCAGTGC+AGG | + | chr5_3:50401329-50401348 | Msa0816210:intron | 45.0% | |
| !! | CATTAGGCCTCTTGATTTGC+AGG | + | chr5_3:50401742-50401761 | Msa0816210:intron | 45.0% |
| ! | GGATAGGGTTTATCTAGGGT+TGG | - | chr5_3:50402046-50402065 | None:intergenic | 45.0% |
| GGCTTGGATAGGGTTTATCT+AGG | - | chr5_3:50402051-50402070 | None:intergenic | 45.0% | |
| CCATGCCAAAAGTAGCAACT+TGG | - | chr5_3:50402186-50402205 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGCTACTTTTGGCA+TGG | + | chr5_3:50402183-50402202 | Msa0816210:intron | 45.0% |
| AAACGTGTGCTCAGTTCTCT+AGG | - | chr5_3:50402217-50402236 | None:intergenic | 45.0% | |
| TTCACGGTCTTTGGCAAACA+TGG | - | chr5_3:50402420-50402439 | None:intergenic | 45.0% | |
| GGTGCATTGTTGTCCATGAA+AGG | + | chr5_3:50402446-50402465 | Msa0816210:intron | 45.0% | |
| GATCTCCTGTTGACAGTTGA+AGG | + | chr5_3:50402702-50402721 | Msa0816210:intron | 45.0% | |
| CATGTCATACTCCATGTGGA+AGG | - | chr5_3:50402784-50402803 | None:intergenic | 45.0% | |
| AGCACATGTCATACTCCATG+TGG | - | chr5_3:50402788-50402807 | None:intergenic | 45.0% | |
| CCTTCAAGGACGTGTTTCAA+TGG | - | chr5_3:50402892-50402911 | None:intergenic | 45.0% | |
| CCATTGAAACACGTCCTTGA+AGG | + | chr5_3:50402889-50402908 | Msa0816210:intron | 45.0% | |
| ACTAAGGCTCCAGCCAAATA+TGG | - | chr5_3:50402936-50402955 | None:intergenic | 45.0% | |
| TGTTTGTGTAGCGTAAGGGA+AGG | + | chr5_3:50403067-50403086 | Msa0816210:intron | 45.0% | |
| TTCCTGCTTCGTTTGCAAGA+GGG | + | chr5_3:50403091-50403110 | Msa0816210:CDS | 45.0% | |
| ! | ACCTCAACCTCATTCTGGTT+CGG | - | chr5_3:50403156-50403175 | None:intergenic | 45.0% |
| ! | AGCTTTTGTGGGATTTTGGG+TGG | + | chr5_3:50403236-50403255 | Msa0816210:CDS | 45.0% |
| GGTTAGAAATCTGCATGGAG+AGG | + | chr5_3:50403307-50403326 | Msa0816210:CDS | 45.0% | |
| ATCCTTGCTTCAATCCTCCA+CGG | + | chr5_3:50403339-50403358 | Msa0816210:CDS | 45.0% | |
| TTCTGCAACAACATTCTCCG+TGG | - | chr5_3:50403359-50403378 | None:intergenic | 45.0% | |
| TGTCAAGGAGTTAACAGCTG+CGG | + | chr5_3:50403463-50403482 | Msa0816210:intron | 45.0% | |
| TCTTTGTGCACCTCCAATGT+TGG | + | chr5_3:50403755-50403774 | Msa0816210:CDS | 45.0% | |
| GTCTTCAACACCAACATTGG+AGG | - | chr5_3:50403768-50403787 | None:intergenic | 45.0% | |
| ! | TTTTCGCCAATGCCTGTAGA+TGG | - | chr5_3:50403801-50403820 | None:intergenic | 45.0% |
| !! | TCTACAGGCATTGGCGAAAA+TGG | + | chr5_3:50403801-50403820 | Msa0816210:CDS | 45.0% |
| ACTGGTGAGTGTGAGGAAGT+TGG | - | chr5_3:50400607-50400626 | None:intergenic | 50.0% | |
| ! | ATCAAGGACTGGTGAGTGTG+AGG | - | chr5_3:50400614-50400633 | None:intergenic | 50.0% |
| AGAACCTATGATCTGGCTGG+TGG | + | chr5_3:50401113-50401132 | Msa0816210:intron | 50.0% | |
| GCAACTTGGCAGCCAAGAAA+TGG | - | chr5_3:50402172-50402191 | None:intergenic | 50.0% | |
| !!! | GGCTGCCAAGTTGCTACTTT+TGG | + | chr5_3:50402178-50402197 | Msa0816210:intron | 50.0% |
| AGCAAGGACCTAAATGCACC+AGG | - | chr5_3:50402262-50402281 | None:intergenic | 50.0% | |
| GGTGCATTTAGGTCCTTGCT+TGG | + | chr5_3:50402262-50402281 | Msa0816210:intron | 50.0% | |
| GGCATTCTTTGTGCCAAGCA+AGG | - | chr5_3:50402278-50402297 | None:intergenic | 50.0% | |
| ACAATGCACCTGCAGCTTCA+CGG | - | chr5_3:50402436-50402455 | None:intergenic | 50.0% | |
| CTTCCTGCTTCGTTTGCAAG+AGG | + | chr5_3:50403090-50403109 | Msa0816210:CDS | 50.0% | |
| AACCCTCTTGCAAACGAAGC+AGG | - | chr5_3:50403096-50403115 | None:intergenic | 50.0% | |
| GCTTCGTTTGCAAGAGGGTT+TGG | + | chr5_3:50403096-50403115 | Msa0816210:CDS | 50.0% | |
| ACGTGATCCGAACCAGAATG+AGG | + | chr5_3:50403146-50403165 | Msa0816210:CDS | 50.0% | |
| TCCGAACCAGAATGAGGTTG+AGG | + | chr5_3:50403152-50403171 | Msa0816210:CDS | 50.0% | |
| CAGCTACCTCAACCTCATTC+TGG | - | chr5_3:50403161-50403180 | None:intergenic | 50.0% | |
| TGCAACAACATTCTCCGTGG+AGG | - | chr5_3:50403356-50403375 | None:intergenic | 50.0% | |
| ACAGCTGCGGACATTTCTTC+TGG | + | chr5_3:50403476-50403495 | Msa0816210:CDS | 50.0% | |
| CACGGGAGCAGCTAACAATA+AGG | + | chr5_3:50403725-50403744 | Msa0816210:CDS | 50.0% | |
| TTGCCTCCATCTACAGGCAT+TGG | + | chr5_3:50403792-50403811 | Msa0816210:CDS | 50.0% | |
| !! | CTTGGTTTGCCTCCATCTGC+TGG | + | chr5_3:50400569-50400588 | Msa0816210:intron | 55.0% |
| GCAACCACCAGCCAGATCAT+AGG | - | chr5_3:50401120-50401139 | None:intergenic | 55.0% | |
| CTGGCTGGTGGTTGCAATTG+TGG | + | chr5_3:50401125-50401144 | Msa0816210:intron | 55.0% | |
| ACCTGCAGCTTCACGGTCTT+TGG | - | chr5_3:50402429-50402448 | None:intergenic | 55.0% | |
| !! | GTGGGATTTTGGGTGGTGCT+TGG | + | chr5_3:50403243-50403262 | Msa0816210:CDS | 55.0% |
| CTCCGTGGAGGATTGAAGCA+AGG | - | chr5_3:50403344-50403363 | None:intergenic | 55.0% | |
| ! | GTGCAACGCCCGTAAGTTGA+TGG | + | chr5_3:50403677-50403696 | Msa0816210:CDS | 55.0% |
| TCGCCAATGCCTGTAGATGG+AGG | - | chr5_3:50403798-50403817 | None:intergenic | 55.0% | |
| !! | CCTTAGGGTTTTGGCGCCCA+TGG | - | chr5_3:50402096-50402115 | None:intergenic | 60.0% |
| CCATGGGCGCCAAAACCCTA+AGG | + | chr5_3:50402093-50402112 | Msa0816210:intron | 60.0% | |
| GCCAAAGACCGTGAAGCTGC+AGG | + | chr5_3:50402425-50402444 | Msa0816210:intron | 60.0% | |
| ! | TTACGGGCGTTGCACAGAGC+TGG | - | chr5_3:50403672-50403691 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50400452 | 50403854 | 50400452 | ID=Msa0816210;Name=Msa0816210 |
| chr5_3 | mRNA | 50400452 | 50403854 | 50400452 | ID=Msa0816210-mRNA-1;Parent=Msa0816210;Name=Msa0816210-mRNA-1;_AED=0.31;_eAED=0.32;_QI=7|0.16|0.14|1|0.16|0|7|0|262 |
| chr5_3 | exon | 50400452 | 50400460 | 50400452 | ID=Msa0816210-mRNA-1:exon:15132;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50401764 | 50401852 | 50401764 | ID=Msa0816210-mRNA-1:exon:15133;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50402724 | 50402809 | 50402724 | ID=Msa0816210-mRNA-1:exon:15134;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50403078 | 50403218 | 50403078 | ID=Msa0816210-mRNA-1:exon:15135;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50403236 | 50403406 | 50403236 | ID=Msa0816210-mRNA-1:exon:15136;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50403470 | 50403509 | 50403470 | ID=Msa0816210-mRNA-1:exon:15137;Parent=Msa0816210-mRNA-1 |
| chr5_3 | exon | 50403598 | 50403854 | 50403598 | ID=Msa0816210-mRNA-1:exon:15138;Parent=Msa0816210-mRNA-1 |
| chr5_3 | five_prime_UTR | 50400452 | 50400458 | 50400452 | ID=Msa0816210-mRNA-1:five_prime_utr;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50400459 | 50400460 | 50400459 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50401764 | 50401852 | 50401764 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50402724 | 50402809 | 50402724 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50403078 | 50403218 | 50403078 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50403236 | 50403406 | 50403236 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50403470 | 50403509 | 50403470 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| chr5_3 | CDS | 50403598 | 50403854 | 50403598 | ID=Msa0816210-mRNA-1:cds;Parent=Msa0816210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
