AlfalfaGEDB | Msa0858140

M. sativa cultivar zhongmu-4 / Msa0858140

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858140	XP_003616581.1	98.919	185	0	2	1	184	1	184	1.14e-131	376

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858140	sp\|Q8H1D2\|WOX5_ARATH	58.011	181	61	5	14	184	7	182	5.04e-60	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858140	G7KBY3	98.919	185	0	2	1	184	1	184	5.44e-132	376

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TFs/TRs:

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Gene ID	Type	Classification
Msa0858140	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0817660	Msa0858140	0.910169	2.529553e-82	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858140	MtrunA17_Chr5g0436661	98.919	185	0	2	1	184	1	184	1.05e-135	376
Msa0858140	MtrunA17_Chr7g0238431	69.841	63	19	0	33	95	8	70	8.19e-28	103
Msa0858140	MtrunA17_Chr8g0392991	64.789	71	25	0	25	95	88	158	1.59e-26	103
Msa0858140	MtrunA17_Chr4g0043891	61.765	68	26	0	33	100	8	75	6.60e-26	99.8
Msa0858140	MtrunA17_Chr1g0153171	65.152	66	23	0	33	98	90	155	7.09e-26	99.4
Msa0858140	MtrunA17_Chr5g0405351	59.459	74	26	2	33	105	30	100	1.17e-24	97.4
Msa0858140	MtrunA17_Chr4g0031341	57.576	66	28	0	33	98	25	90	9.96e-24	94.4
Msa0858140	MtrunA17_Chr8g0385441	69.091	55	17	0	44	98	93	147	3.15e-20	82.8
Msa0858140	MtrunA17_Chr3g0125111	67.273	55	18	0	44	98	91	145	7.58e-20	81.6
Msa0858140	MtrunA17_Chr7g0223471	45.161	62	34	0	33	94	47	108	1.51e-15	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858140	AT3G11260.1	58.011	181	61	5	14	184	7	182	5.13e-61	187
Msa0858140	AT5G05770.1	65.487	113	31	3	4	110	2	112	9.45e-41	134
Msa0858140	AT3G18010.1	71.429	63	18	0	33	95	76	138	7.54e-27	104
Msa0858140	AT2G28610.1	65.079	63	22	0	33	95	8	70	6.19e-26	100
Msa0858140	AT5G59340.1	57.333	75	27	1	21	95	7	76	2.72e-25	98.6
Msa0858140	AT1G46480.2	63.492	63	23	0	33	95	90	152	1.19e-24	95.5
Msa0858140	AT1G46480.1	63.492	63	23	0	33	95	90	152	7.04e-24	94.7
Msa0858140	AT2G17950.1	66.667	63	20	1	33	94	38	100	9.60e-24	95.1
Msa0858140	AT2G01500.1	67.273	55	18	0	33	87	61	115	1.13e-21	89.4
Msa0858140	AT2G33880.1	45.161	62	34	0	33	94	55	116	5.77e-15	72.0

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Find 24 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAACCGTAAGTCCAA+TGG	0.615710	5_4:+55282599	None:intergenic
AACACCCACCATTGGACTTA+CGG	0.439714	5_4:-55282607	Msa0858140:CDS
AATATGGAAGAGAGCATGTC+AGG	0.497698	5_4:-55283394	Msa0858140:CDS
ACAAATGGAACACCCACCAT+TGG	0.543359	5_4:-55282615	Msa0858140:CDS
AGAGCAAGAATGTGTTCTAT+TGG	0.384217	5_4:-55283171	Msa0858140:CDS
AGAGTCTCAATCACTCTATC+AGG	0.404414	5_4:+55282749	None:intergenic
AGCAGCACTGGCACAAAGTG+TGG	0.575447	5_4:-55283319	Msa0858140:CDS
AGTAGTTTCCATGGTAAAAG+TGG	0.503916	5_4:-55283349	Msa0858140:CDS
AGTGGAAGCAGCAGCAGCAC+TGG	0.493876	5_4:-55283331	Msa0858140:CDS
AGTTTAACTTGTTCTGTTGT+TGG	0.328649	5_4:+55283286	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATAAATGAGATGCGT+CGG	+	chr5_4:55282975-55282994	None:intergenic	30.0%
AGTATCAGATCAAAGTTTCA+AGG	+	chr5_4:55283015-55283034	None:intergenic	30.0%
TTTGCATACACATGTACAAT+GGG	-	chr5_4:55283342-55283361	Msa0858140:CDS	30.0%
AAAGAATAAATGAGATGCGT+CGG	+	chr5_4:55282975-55282994	None:intergenic	30.0%
AGTATCAGATCAAAGTTTCA+AGG	+	chr5_4:55283015-55283034	None:intergenic	30.0%
TTTGCATACACATGTACAAT+GGG	-	chr5_4:55283342-55283361	Msa0858140:CDS	30.0%
AGTAGTTTCCATGGTAAAAG+TGG	-	chr5_4:55282634-55282653	Msa0858140:CDS	35.0%
TTCTGAATTTGATCAGTGCT+TGG	+	chr5_4:55282757-55282776	None:intergenic	35.0%
AGAGCAAGAATGTGTTCTAT+TGG	-	chr5_4:55282812-55282831	Msa0858140:intron	35.0%
GTTTCAGAATCACAAAGCTA+GGG	-	chr5_4:55282834-55282853	Msa0858140:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	55282592	55283413	55282592	ID=Msa0858140;Name=Msa0858140
chr5_4	mRNA	55282592	55283413	55282592	ID=Msa0858140-mRNA-1;Parent=Msa0858140;Name=Msa0858140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|184
chr5_4	exon	55283062	55283413	55283062	ID=Msa0858140-mRNA-1:exon:16972;Parent=Msa0858140-mRNA-1
chr5_4	exon	55282592	55282794	55282592	ID=Msa0858140-mRNA-1:exon:16971;Parent=Msa0858140-mRNA-1
chr5_4	CDS	55283062	55283413	55283062	ID=Msa0858140-mRNA-1:cds;Parent=Msa0858140-mRNA-1
chr5_4	CDS	55282592	55282794	55282592	ID=Msa0858140-mRNA-1:cds;Parent=Msa0858140-mRNA-1

Gene Sequence

>Msa0858140

ATGGAAGAGAGCATGTCAGGCTTTTGCATGAAATCATCTGGAAGTAGTTTCCATGGTAAAAGTGGAAGCAGCAGCAGCACTGGCACAAAGTGTGGTCGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGCACTGATCAAATTCAGAAAATATCCAATCAACTTAGTTTTTATGGTAAGATAGAGAGCAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCTAGGGAAAGACAAAAACGTCGTAAGGTTTCTTTTGATGATGACAAGGATGTCATAGTTCATAGAGACAACTCTATGAATGCTTCAACACAAAGGTTTGCTGAGATGTACTCAGAACCTGATAGAGTGATTGAGACTCTCGAACTTTTTCCATTGAACTCATTTGGTGAATCAGAATCAGAGAAGTGGAGTATGCATGCAAATGAATGCAGGGAAAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAACACCCACCATTGGACTTACGGTTGAGTTTTGTGTAA

Protein sequence

>Msa0858140

MEESMSGFCMKSSGSSFHGKSGSSSSTGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVIVHRDNSMNASTQRFAEMYSEPDRVIETLELFPLNSFGESESEKWSMHANECRENTMFAYTCTMGEQMEHPPLDLRLSFV*