Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859460 | XP_003616826.1 | 93.298 | 373 | 19 | 1 | 1 | 367 | 25 | 397 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859460 | sp|Q8L8M9|IQD33_ARATH | 37.705 | 427 | 182 | 12 | 2 | 367 | 27 | 430 | 1.21e-66 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859460 | G7K7F4 | 93.298 | 373 | 19 | 1 | 1 | 367 | 25 | 397 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0819420 | Msa0859460 | 0.812956 | 3.266397e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859460 | MtrunA17_Chr5g0438571 | 93.298 | 373 | 19 | 1 | 1 | 367 | 25 | 397 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859460 | AT5G35670.1 | 37.705 | 427 | 182 | 12 | 2 | 367 | 27 | 430 | 1.23e-67 | 220 |
| Msa0859460 | AT3G52290.1 | 31.953 | 169 | 108 | 2 | 80 | 241 | 107 | 275 | 1.38e-12 | 68.9 |
| Msa0859460 | AT2G26410.2 | 34.637 | 179 | 96 | 7 | 80 | 242 | 147 | 320 | 4.49e-12 | 67.8 |
| Msa0859460 | AT2G26410.1 | 34.637 | 179 | 96 | 7 | 80 | 242 | 147 | 320 | 4.49e-12 | 67.8 |
| Msa0859460 | AT3G09710.1 | 27.969 | 261 | 160 | 8 | 35 | 282 | 66 | 311 | 4.60e-12 | 67.4 |
Find 50 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTGGAGTTTGAATT+TGG | 0.239655 | 5_4:+57790454 | None:intergenic |
| TTCTTCTTCATTCAATGATT+TGG | 0.248388 | 5_4:+57790441 | None:intergenic |
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5_4:-57790523 | Msa0859460:CDS |
| ACATAATTAGTTGACTTATT+TGG | 0.257575 | 5_4:+57787527 | None:intergenic |
| CTCAACAGTTTCTTCACTCT+TGG | 0.300918 | 5_4:+57790495 | None:intergenic |
| TTGAAATTGTTAAGCTTTGA+TGG | 0.308441 | 5_4:-57791042 | Msa0859460:five_prime_UTR |
| ATATTAAGATGTAATTATAA+TGG | 0.340152 | 5_4:-57787380 | Msa0859460:three_prime_UTR |
| GACATCATAAGCTCAGAAAA+TGG | 0.348697 | 5_4:-57789672 | Msa0859460:CDS |
| GGCTTATGCTTTCTCACAAC+AGG | 0.367408 | 5_4:-57788906 | Msa0859460:intron |
| TGTACTTACAAATAGAATAA+TGG | 0.382048 | 5_4:+57787333 | None:intergenic |
| CTTTGATGGGTTTCACTGTT+GGG | 0.384078 | 5_4:-57791028 | Msa0859460:five_prime_UTR |
| AAGTCCAGACAGAAAATCTA+TGG | 0.389860 | 5_4:-57789622 | Msa0859460:CDS |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5_4:+57790531 | None:intergenic |
| GTACATAATATTACGTGCTT+TGG | 0.399633 | 5_4:-57787315 | Msa0859460:three_prime_UTR |
| TTAAAATTAGTCTTCATTGT+TGG | 0.418324 | 5_4:+57788407 | None:intergenic |
| ATCAGCATATAGAAGTTTCA+AGG | 0.419115 | 5_4:-57790401 | Msa0859460:intron |
| GCTTTGATGGGTTTCACTGT+TGG | 0.430356 | 5_4:-57791029 | Msa0859460:five_prime_UTR |
| ACATCAGTTGAAGTACAAAC+AGG | 0.432498 | 5_4:-57789597 | Msa0859460:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5_4:+57788350 | None:intergenic |
| AACTAAAGCAATAAAGCAAA+AGG | 0.480169 | 5_4:-57789502 | Msa0859460:intron |
| TGAAATTGTTAAGCTTTGAT+GGG | 0.504288 | 5_4:-57791041 | Msa0859460:five_prime_UTR |
| GATGGGTTTCACTGTTGGGT+TGG | 0.505076 | 5_4:-57791024 | Msa0859460:five_prime_UTR |
| ATTCATCCGAAAATAGAAGA+TGG | 0.516203 | 5_4:-57790654 | Msa0859460:CDS |
| GTAGCAATGTTTCGAAAATG+AGG | 0.518133 | 5_4:-57788973 | Msa0859460:CDS |
| AATGAGGATGCAAGACAGAA+TGG | 0.526107 | 5_4:-57788957 | Msa0859460:CDS |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5_4:+57788588 | None:intergenic |
| ACATGGAACAAAATATGAGC+TGG | 0.546448 | 5_4:-57788667 | Msa0859460:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5_4:+57789569 | None:intergenic |
| TGAGCTGGAGTTGGCTCGAA+AGG | 0.559271 | 5_4:-57788652 | Msa0859460:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5_4:-57788661 | Msa0859460:CDS |
| ATTTCATGATGAACATCCAA+AGG | 0.567837 | 5_4:-57788339 | Msa0859460:intron |
| AAGCTAGGAGAACTGTGTCT+AGG | 0.575861 | 5_4:-57788385 | Msa0859460:CDS |
| CTCATTACTAGAAGCTCTGA+GGG | 0.578397 | 5_4:+57787456 | None:intergenic |
| TTACGTGCTTTGGAACGAGA+TGG | 0.580276 | 5_4:-57787305 | Msa0859460:three_prime_UTR |
| ACAGAATGGAAGCAGCTACA+AGG | 0.585908 | 5_4:-57788943 | Msa0859460:CDS |
| TCGAAAGGTGGATGGCAACT+CGG | 0.586917 | 5_4:-57788637 | Msa0859460:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5_4:+57790587 | None:intergenic |
| GTCTTCTCAAGAAATCATGT+TGG | 0.603751 | 5_4:-57790993 | Msa0859460:five_prime_UTR |
| TACAAGGAGAGAAAGAGCAT+TGG | 0.605289 | 5_4:-57788927 | Msa0859460:CDS |
| CTAGGAGAACTGTGTCTAGG+AGG | 0.606464 | 5_4:-57788382 | Msa0859460:CDS |
| GAGTTGGCTCGAAAGGTGGA+TGG | 0.611180 | 5_4:-57788645 | Msa0859460:CDS |
| GAATAGTTATCAAAATGAAG+TGG | 0.611561 | 5_4:+57788470 | None:intergenic |
| TTGCAGGTAAGCATGAAAGA+TGG | 0.613045 | 5_4:-57787663 | Msa0859460:intron |
| GCTGGAGTTGGCTCGAAAGG+TGG | 0.621737 | 5_4:-57788649 | Msa0859460:CDS |
| TCAGTTAAATCATACTTGTG+TGG | 0.635037 | 5_4:-57790628 | Msa0859460:CDS |
| CATCAGTTGAAGTACAAACA+GGG | 0.652318 | 5_4:-57789596 | Msa0859460:CDS |
| TGTGTCTACTAGTATTGAGT+GGG | 0.660229 | 5_4:-57787505 | Msa0859460:three_prime_UTR |
| ACTCATTACTAGAAGCTCTG+AGG | 0.665670 | 5_4:+57787455 | None:intergenic |
| GTGTGTCTACTAGTATTGAG+TGG | 0.680075 | 5_4:-57787506 | Msa0859460:three_prime_UTR |
| ACTAGCAAAACATAACAACA+TGG | 0.703514 | 5_4:-57788684 | Msa0859460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATTCTTTAAAAAGA+AGG | - | chr5_4:57788291-57788310 | Msa0859460:intron | 10.0% |
| !!! | AATATAAAGTACATATTTTA+TGG | + | chr5_4:57788547-57788566 | None:intergenic | 10.0% |
| !!! | AAATACTAATTTTTTATTCA+TGG | + | chr5_4:57788600-57788619 | None:intergenic | 10.0% |
| !! | ATATTAAGATGTAATTATAA+TGG | - | chr5_4:57790974-57790993 | Msa0859460:intron | 10.0% |
| !! | AAAAAAATTATGGTCAAATA+TGG | + | chr5_4:57788405-57788424 | None:intergenic | 15.0% |
| !! | GTGATATTACAAAAAAATTA+TGG | + | chr5_4:57788415-57788434 | None:intergenic | 15.0% |
| !! | ATTATTATTAAATAAGAGAG+TGG | - | chr5_4:57789058-57789077 | Msa0859460:intron | 15.0% |
| !! | GTATAATTAATTAAGAAAAG+TGG | + | chr5_4:57789209-57789228 | None:intergenic | 15.0% |
| !!! | TAATAACATTGAAATTTTTC+AGG | - | chr5_4:57789334-57789353 | Msa0859460:intron | 15.0% |
| !! | ATCTATTTAAAAGTAATTGA+GGG | + | chr5_4:57790128-57790147 | None:intergenic | 15.0% |
| !!! | CTTTAAAACTAATTTTGTTA+TGG | + | chr5_4:57790540-57790559 | None:intergenic | 15.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | + | chr5_4:57788107-57788126 | None:intergenic | 20.0% |
| !!! | TGACAATGTAAAATGTTTTA+AGG | + | chr5_4:57788145-57788164 | None:intergenic | 20.0% |
| !!! | AATAAAAAGGTTCTAAATTG+TGG | + | chr5_4:57788445-57788464 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTAAAGTATGTTC+TGG | + | chr5_4:57789036-57789055 | None:intergenic | 20.0% |
| !!! | TTAAAATTAGTCTTCATTGT+TGG | + | chr5_4:57789950-57789969 | None:intergenic | 20.0% |
| !! | AATAAAGAAATTCTAACCTT+TGG | + | chr5_4:57790034-57790053 | None:intergenic | 20.0% |
| !! | TAGTACATTATATATGTTTG+TGG | - | chr5_4:57790088-57790107 | Msa0859460:intron | 20.0% |
| !! | GATCTATTTAAAAGTAATTG+AGG | + | chr5_4:57790129-57790148 | None:intergenic | 20.0% |
| !! | TTCATAGTATATCATAAACA+AGG | - | chr5_4:57790345-57790364 | Msa0859460:intron | 20.0% |
| !! | CATAAAAAATCTTGATGTTA+TGG | - | chr5_4:57790425-57790444 | Msa0859460:CDS | 20.0% |
| !! | TTTGTCACATTAAATGATAT+CGG | - | chr5_4:57790481-57790500 | Msa0859460:CDS | 20.0% |
| !! | TGATATTTATAATATGGTAG+TGG | + | chr5_4:57790660-57790679 | None:intergenic | 20.0% |
| !!! | ACATAATTAGTTGACTTATT+TGG | + | chr5_4:57790830-57790849 | None:intergenic | 20.0% |
| !! | TGTACTTACAAATAGAATAA+TGG | + | chr5_4:57791024-57791043 | None:intergenic | 20.0% |
| !! | TTGAAATTGTTAAGCTTTGA+TGG | - | chr5_4:57787312-57787331 | Msa0859460:three_prime_UTR | 25.0% |
| !! | TGAAATTGTTAAGCTTTGAT+GGG | - | chr5_4:57787313-57787332 | Msa0859460:three_prime_UTR | 25.0% |
| ! | TGATGTTATAGCTAAAATTG+CGG | - | chr5_4:57787560-57787579 | Msa0859460:exon | 25.0% |
| ! | ACAAAGAATGAGAACATAAT+TGG | + | chr5_4:57787611-57787630 | None:intergenic | 25.0% |
| !! | TGATATCCATCTTCTATTTT+CGG | + | chr5_4:57787709-57787728 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | + | chr5_4:57787903-57787922 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATTCAATGATT+TGG | + | chr5_4:57787916-57787935 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | + | chr5_4:57788050-57788069 | None:intergenic | 25.0% |
| ! | CATAAAAGTCATGTAAATGA+TGG | + | chr5_4:57788183-57788202 | None:intergenic | 25.0% |
| !! | CATCATTTACATGACTTTTA+TGG | - | chr5_4:57788181-57788200 | Msa0859460:intron | 25.0% |
| ! | ACACATTGATCTCAATAAAA+AGG | + | chr5_4:57788458-57788477 | None:intergenic | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | + | chr5_4:57788788-57788807 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | - | chr5_4:57788787-57788806 | Msa0859460:intron | 25.0% |
| ! | AACTAAAGCAATAAAGCAAA+AGG | - | chr5_4:57788852-57788871 | Msa0859460:intron | 25.0% |
| ! | TCAGAAAGAATTATCAGTTA+AGG | - | chr5_4:57789004-57789023 | Msa0859460:intron | 25.0% |
| ! | ATCAGAAAATATTAGAAGAG+TGG | - | chr5_4:57789091-57789110 | Msa0859460:intron | 25.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | - | chr5_4:57789118-57789137 | Msa0859460:intron | 25.0% |
| !!! | CTTGAATTTTAAAACATTGC+TGG | + | chr5_4:57789149-57789168 | None:intergenic | 25.0% |
| ! | ACTTAGACGAAGTATAATAT+AGG | - | chr5_4:57789277-57789296 | Msa0859460:intron | 25.0% |
| !!! | TTGAAATTTTTCAGGAAGAT+TGG | - | chr5_4:57789342-57789361 | Msa0859460:intron | 25.0% |
| !!! | TGAAATTTTTCAGGAAGATT+GGG | - | chr5_4:57789343-57789362 | Msa0859460:intron | 25.0% |
| !!! | AACCTTTTTAGAGACTAAAT+CGG | + | chr5_4:57789520-57789539 | None:intergenic | 25.0% |
| ! | GAATAGTTATCAAAATGAAG+TGG | + | chr5_4:57789887-57789906 | None:intergenic | 25.0% |
| !!! | TGAAGACTAATTTTAAAGCT+AGG | - | chr5_4:57789954-57789973 | Msa0859460:intron | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | + | chr5_4:57790007-57790026 | None:intergenic | 25.0% |
| ! | TTCATAAATCATCTAAGTCA+AGG | - | chr5_4:57790057-57790076 | Msa0859460:intron | 25.0% |
| ! | TAAAGTGATTGAATATGTGT+TGG | + | chr5_4:57790269-57790288 | None:intergenic | 25.0% |
| !!! | ATTGTTGATTTGAAATCAGA+CGG | - | chr5_4:57790567-57790586 | Msa0859460:CDS | 25.0% |
| !!! | TATCATTTTTATGTTGTTGC+AGG | - | chr5_4:57790675-57790694 | Msa0859460:exon | 25.0% |
| ATTCATCCGAAAATAGAAGA+TGG | - | chr5_4:57787700-57787719 | Msa0859460:intron | 30.0% | |
| TCAGTTAAATCATACTTGTG+TGG | - | chr5_4:57787726-57787745 | Msa0859460:intron | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | + | chr5_4:57787826-57787845 | None:intergenic | 30.0% | |
| !! | GAAGATTTGTTGAGTGATAA+AGG | - | chr5_4:57787831-57787850 | Msa0859460:intron | 30.0% |
| ATCAGCATATAGAAGTTTCA+AGG | - | chr5_4:57787953-57787972 | Msa0859460:intron | 30.0% | |
| TTCCATGAGTTTACCTTTAA+AGG | - | chr5_4:57788069-57788088 | Msa0859460:intron | 30.0% | |
| ! | AACCTTTAAAGGTAAACTCA+TGG | + | chr5_4:57788074-57788093 | None:intergenic | 30.0% |
| !!! | GTAAAATGTTTTAAGGTGCA+TGG | + | chr5_4:57788138-57788157 | None:intergenic | 30.0% |
| TGTCAATCAATCATAACTGT+TGG | + | chr5_4:57788240-57788259 | None:intergenic | 30.0% | |
| CGACGCAATTATAATTTCAA+CGG | + | chr5_4:57788321-57788340 | None:intergenic | 30.0% | |
| AAATTATAATTGCGTCGTCA+GGG | - | chr5_4:57788324-57788343 | Msa0859460:intron | 30.0% | |
| TATGCTACATATTTCAGTTG+AGG | - | chr5_4:57788647-57788666 | Msa0859460:CDS | 30.0% | |
| AGACGAAGTATAATATAGGA+CGG | - | chr5_4:57789281-57789300 | Msa0859460:intron | 30.0% | |
| ! | AACCGATTTAGTCTCTAAAA+AGG | - | chr5_4:57789515-57789534 | Msa0859460:CDS | 30.0% |
| TTTGACACATAGTAAATTCG+AGG | - | chr5_4:57789567-57789586 | Msa0859460:CDS | 30.0% | |
| TTGACACATAGTAAATTCGA+GGG | - | chr5_4:57789568-57789587 | Msa0859460:CDS | 30.0% | |
| ACTAGCAAAACATAACAACA+TGG | - | chr5_4:57789670-57789689 | Msa0859460:CDS | 30.0% | |
| !! | ACAAGATTTTTAGATGCTTC+TGG | - | chr5_4:57789824-57789843 | Msa0859460:intron | 30.0% |
| ATTTCATGATGAACATCCAA+AGG | - | chr5_4:57790015-57790034 | Msa0859460:intron | 30.0% | |
| GAAAACGTGTTTAGTACATA+TGG | - | chr5_4:57790202-57790221 | Msa0859460:intron | 30.0% | |
| ! | AGTTCTAATTATAGGTGATC+CGG | + | chr5_4:57790453-57790472 | None:intergenic | 30.0% |
| ! | CTACGTAGAGTTCTAATTAT+AGG | + | chr5_4:57790461-57790480 | None:intergenic | 30.0% |
| !!! | ATCTTGCTTTAGTTTTTGCT+TGG | + | chr5_4:57790722-57790741 | None:intergenic | 30.0% |
| GTACATAATATTACGTGCTT+TGG | - | chr5_4:57791039-57791058 | Msa0859460:five_prime_UTR | 30.0% | |
| GTCTTCTCAAGAAATCATGT+TGG | - | chr5_4:57787361-57787380 | Msa0859460:three_prime_UTR | 35.0% | |
| GAGAGAAGCAATACAAATTG+AGG | + | chr5_4:57787409-57787428 | None:intergenic | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | - | chr5_4:57788039-57788058 | Msa0859460:intron | 35.0% | |
| !! | ACCAACTTTTTCTTGGAATG+AGG | + | chr5_4:57788043-57788062 | None:intergenic | 35.0% |
| GAAATTATAATTGCGTCGTC+AGG | - | chr5_4:57788323-57788342 | Msa0859460:intron | 35.0% | |
| TTATAATCGCAATGCAGTTG+CGG | + | chr5_4:57788362-57788381 | None:intergenic | 35.0% | |
| TTGAGATCAATGTGTGTATG+TGG | - | chr5_4:57788463-57788482 | Msa0859460:CDS | 35.0% | |
| GACATCATAAGCTCAGAAAA+TGG | - | chr5_4:57788682-57788701 | Msa0859460:CDS | 35.0% | |
| AAGTCCAGACAGAAAATCTA+TGG | - | chr5_4:57788732-57788751 | Msa0859460:intron | 35.0% | |
| ACATCAGTTGAAGTACAAAC+AGG | - | chr5_4:57788757-57788776 | Msa0859460:intron | 35.0% | |
| CATCAGTTGAAGTACAAACA+GGG | - | chr5_4:57788758-57788777 | Msa0859460:intron | 35.0% | |
| ! | TTTACAACAGTTTTCAGCAC+AGG | - | chr5_4:57788824-57788843 | Msa0859460:intron | 35.0% |
| ! | TCTGAACTAGCACATGATTT+TGG | - | chr5_4:57788903-57788922 | Msa0859460:intron | 35.0% |
| ! | TTCAAGTGTGATGATGATGT+TGG | - | chr5_4:57789163-57789182 | Msa0859460:intron | 35.0% |
| TGGAAGTTTAATCTTCCACT+AGG | - | chr5_4:57789183-57789202 | Msa0859460:intron | 35.0% | |
| AATTAAGAAAAGTGGCCTAG+TGG | + | chr5_4:57789201-57789220 | None:intergenic | 35.0% | |
| GAAGTATAATATAGGACGGA+GGG | - | chr5_4:57789285-57789304 | Msa0859460:intron | 35.0% | |
| GTAGCAATGTTTCGAAAATG+AGG | - | chr5_4:57789381-57789400 | Msa0859460:intron | 35.0% | |
| ! | AGTCTCTAAAAAGGTTCATG+AGG | - | chr5_4:57789524-57789543 | Msa0859460:CDS | 35.0% |
| ! | TATTTTACAACCGTTGTCGA+GGG | + | chr5_4:57789608-57789627 | None:intergenic | 35.0% |
| ACATGGAACAAAATATGAGC+TGG | - | chr5_4:57789687-57789706 | Msa0859460:CDS | 35.0% | |
| AACAAAATATGAGCTGGAGT+TGG | - | chr5_4:57789693-57789712 | Msa0859460:CDS | 35.0% | |
| !! | AGATTTTTAGATGCTTCTGG+TGG | - | chr5_4:57789827-57789846 | Msa0859460:intron | 35.0% |
| AGTGATTGAATATGTGTTGG+TGG | + | chr5_4:57790266-57790285 | None:intergenic | 35.0% | |
| !!! | AAGGTTTTAAACCACGATTG+TGG | - | chr5_4:57790364-57790383 | Msa0859460:intron | 35.0% |
| ! | TTAAACCACGATTGTGGTTT+TGG | - | chr5_4:57790370-57790389 | Msa0859460:intron | 35.0% |
| AAATCTTGATGTTATGGACC+CGG | - | chr5_4:57790431-57790450 | Msa0859460:CDS | 35.0% | |
| GTTCTAATTATAGGTGATCC+GGG | + | chr5_4:57790452-57790471 | None:intergenic | 35.0% | |
| TGTGCAATAACTACGTCATT+CGG | + | chr5_4:57790606-57790625 | None:intergenic | 35.0% | |
| ! | TGTGTCTACTAGTATTGAGT+GGG | - | chr5_4:57790849-57790868 | Msa0859460:intron | 35.0% |
| !! | CTTTGATGGGTTTCACTGTT+GGG | - | chr5_4:57787326-57787345 | Msa0859460:three_prime_UTR | 40.0% |
| AAGCTGAATCTTCTTCTGCA+AGG | + | chr5_4:57787770-57787789 | None:intergenic | 40.0% | |
| CTCAACAGTTTCTTCACTCT+TGG | + | chr5_4:57787862-57787881 | None:intergenic | 40.0% | |
| GCATCACAAGCAACCTTTAA+AGG | + | chr5_4:57788085-57788104 | None:intergenic | 40.0% | |
| ! | GTAGCCATAGATTTTCTGTC+TGG | + | chr5_4:57788739-57788758 | None:intergenic | 40.0% |
| CGAAGTATAATATAGGACGG+AGG | - | chr5_4:57789284-57789303 | Msa0859460:intron | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | - | chr5_4:57789397-57789416 | Msa0859460:intron | 40.0% | |
| ! | TACAAGGAGAGAAAGAGCAT+TGG | - | chr5_4:57789427-57789446 | Msa0859460:intron | 40.0% |
| AATTCAGATTCCCTCGACAA+CGG | - | chr5_4:57789595-57789614 | Msa0859460:CDS | 40.0% | |
| ! | GTATTTTACAACCGTTGTCG+AGG | + | chr5_4:57789609-57789628 | None:intergenic | 40.0% |
| TTTCATACTGCTTCATCGCA+TGG | + | chr5_4:57789769-57789788 | None:intergenic | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | - | chr5_4:57789848-57789867 | Msa0859460:intron | 40.0% | |
| CACATGTAGTTACATTCACG+TGG | + | chr5_4:57790243-57790262 | None:intergenic | 40.0% | |
| GGTTGACATATACTAGCACA+TGG | + | chr5_4:57790639-57790658 | None:intergenic | 40.0% | |
| TTGCAGGTAAGCATGAAAGA+TGG | - | chr5_4:57790691-57790710 | Msa0859460:five_prime_UTR | 40.0% | |
| ! | GTGTGTCTACTAGTATTGAG+TGG | - | chr5_4:57790848-57790867 | Msa0859460:intron | 40.0% |
| ! | CTCATTACTAGAAGCTCTGA+GGG | + | chr5_4:57790901-57790920 | None:intergenic | 40.0% |
| ACTCATTACTAGAAGCTCTG+AGG | + | chr5_4:57790902-57790921 | None:intergenic | 40.0% | |
| !! | GCTTTGATGGGTTTCACTGT+TGG | - | chr5_4:57787325-57787344 | Msa0859460:three_prime_UTR | 45.0% |
| ! | ACCTCAAAGCATTAGCGTTG+AGG | - | chr5_4:57787516-57787535 | Msa0859460:three_prime_UTR | 45.0% |
| ACCTCAACGCTAATGCTTTG+AGG | + | chr5_4:57787520-57787539 | None:intergenic | 45.0% | |
| AGGTTGCTTGTGATGCCAAA+AGG | - | chr5_4:57788089-57788108 | Msa0859460:intron | 45.0% | |
| ACAGAATGGAAGCAGCTACA+AGG | - | chr5_4:57789411-57789430 | Msa0859460:intron | 45.0% | |
| GGCTTATGCTTTCTCACAAC+AGG | - | chr5_4:57789448-57789467 | Msa0859460:intron | 45.0% | |
| TATTCGTAGCTGCAACAACG+AGG | + | chr5_4:57789636-57789655 | None:intergenic | 45.0% | |
| AAGCTAGGAGAACTGTGTCT+AGG | - | chr5_4:57789969-57789988 | Msa0859460:intron | 45.0% | |
| GACAACCAAAACCACAATCG+TGG | + | chr5_4:57790378-57790397 | None:intergenic | 45.0% | |
| !! | TTACGTGCTTTGGAACGAGA+TGG | - | chr5_4:57791049-57791068 | Msa0859460:five_prime_UTR | 45.0% |
| !! | AATTATTATAAAATAAAACT+TGG | - | chr5_4:57788937-57788956 | Msa0859460:CDS | 5.0% |
| !! | TAAAAATGATATTTATAATA+TGG | + | chr5_4:57790666-57790685 | None:intergenic | 5.0% |
| ! | GATGGGTTTCACTGTTGGGT+TGG | - | chr5_4:57787330-57787349 | Msa0859460:three_prime_UTR | 50.0% |
| TCGAAAGGTGGATGGCAACT+CGG | - | chr5_4:57789717-57789736 | Msa0859460:intron | 50.0% | |
| CTAGGAGAACTGTGTCTAGG+AGG | - | chr5_4:57789972-57789991 | Msa0859460:intron | 50.0% | |
| ! | GACGGAGGGAGTGTGACATA+AGG | - | chr5_4:57789299-57789318 | Msa0859460:intron | 55.0% |
| !! | TGAGCTGGAGTTGGCTCGAA+AGG | - | chr5_4:57789702-57789721 | Msa0859460:intron | 55.0% |
| !! | GAGTTGGCTCGAAAGGTGGA+TGG | - | chr5_4:57789709-57789728 | Msa0859460:intron | 55.0% |
| !! | GCTGGAGTTGGCTCGAAAGG+TGG | - | chr5_4:57789705-57789724 | Msa0859460:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57787300 | 57791076 | 57787300 | ID=Msa0859460;Name=Msa0859460 |
| chr5_4 | mRNA | 57787300 | 57791076 | 57787300 | ID=Msa0859460-mRNA-1;Parent=Msa0859460;Name=Msa0859460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|0.8|0.83|6|275|367 |
| chr5_4 | exon | 57787300 | 57787679 | 57787300 | ID=Msa0859460-mRNA-1:exon:17646;Parent=Msa0859460-mRNA-1 |
| chr5_4 | exon | 57788340 | 57788729 | 57788340 | ID=Msa0859460-mRNA-1:exon:17645;Parent=Msa0859460-mRNA-1 |
| chr5_4 | exon | 57788907 | 57789020 | 57788907 | ID=Msa0859460-mRNA-1:exon:17644;Parent=Msa0859460-mRNA-1 |
| chr5_4 | exon | 57789503 | 57789712 | 57789503 | ID=Msa0859460-mRNA-1:exon:17643;Parent=Msa0859460-mRNA-1 |
| chr5_4 | exon | 57790402 | 57790734 | 57790402 | ID=Msa0859460-mRNA-1:exon:17642;Parent=Msa0859460-mRNA-1 |
| chr5_4 | exon | 57790977 | 57791076 | 57790977 | ID=Msa0859460-mRNA-1:exon:17641;Parent=Msa0859460-mRNA-1 |
| chr5_4 | five_prime_UTR | 57790977 | 57791076 | 57790977 | ID=Msa0859460-mRNA-1:five_prime_utr;Parent=Msa0859460-mRNA-1 |
| chr5_4 | five_prime_UTR | 57790687 | 57790734 | 57790687 | ID=Msa0859460-mRNA-1:five_prime_utr;Parent=Msa0859460-mRNA-1 |
| chr5_4 | CDS | 57790402 | 57790686 | 57790402 | ID=Msa0859460-mRNA-1:cds;Parent=Msa0859460-mRNA-1 |
| chr5_4 | CDS | 57789503 | 57789712 | 57789503 | ID=Msa0859460-mRNA-1:cds;Parent=Msa0859460-mRNA-1 |
| chr5_4 | CDS | 57788907 | 57789020 | 57788907 | ID=Msa0859460-mRNA-1:cds;Parent=Msa0859460-mRNA-1 |
| chr5_4 | CDS | 57788340 | 57788729 | 57788340 | ID=Msa0859460-mRNA-1:cds;Parent=Msa0859460-mRNA-1 |
| chr5_4 | CDS | 57787575 | 57787679 | 57787575 | ID=Msa0859460-mRNA-1:cds;Parent=Msa0859460-mRNA-1 |
| chr5_4 | three_prime_UTR | 57787300 | 57787574 | 57787300 | ID=Msa0859460-mRNA-1:three_prime_utr;Parent=Msa0859460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
