Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819420 | XP_003616826.1 | 92.857 | 364 | 20 | 1 | 1 | 358 | 25 | 388 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819420 | sp|Q8L8M9|IQD33_ARATH | 38.325 | 394 | 163 | 11 | 2 | 334 | 27 | 401 | 5.69e-66 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819420 | G7K7F4 | 92.857 | 364 | 20 | 1 | 1 | 358 | 25 | 388 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa0819420 | -0.813352 | 2.673318e-51 | -8.615850e-47 |
| Msa0081520 | Msa0819420 | 0.856023 | 4.257506e-62 | -8.615850e-47 |
| Msa0094850 | Msa0819420 | 0.805323 | 1.410717e-49 | -8.615850e-47 |
| Msa0626450 | Msa0819420 | 0.831314 | 1.791063e-55 | -8.615850e-47 |
| Msa0626490 | Msa0819420 | 0.831727 | 1.416632e-55 | -8.615850e-47 |
| Msa0638480 | Msa0819420 | 0.817474 | 3.236293e-52 | -8.615850e-47 |
| Msa0664600 | Msa0819420 | 0.828809 | 7.311151e-55 | -8.615850e-47 |
| Msa0724910 | Msa0819420 | 0.826402 | 2.766437e-54 | -8.615850e-47 |
| Msa0727640 | Msa0819420 | 0.821608 | 3.687549e-53 | -8.615850e-47 |
| Msa0738040 | Msa0819420 | 0.801316 | 9.535968e-49 | -8.615850e-47 |
| Msa0742740 | Msa0819420 | 0.806702 | 7.235975e-50 | -8.615850e-47 |
| Msa0765240 | Msa0819420 | 0.821459 | 3.991929e-53 | -8.615850e-47 |
| Msa0819420 | Msa0823820 | 0.805043 | 1.614745e-49 | -8.615850e-47 |
| Msa0819420 | Msa0859460 | 0.812956 | 3.266397e-51 | -8.615850e-47 |
| Msa0819420 | Msa0863010 | 0.800252 | 1.572186e-48 | -8.615850e-47 |
| Msa0819420 | Msa1072940 | 0.803883 | 2.817848e-49 | -8.615850e-47 |
| Msa0819420 | Msa1125940 | 0.814161 | 1.773554e-51 | -8.615850e-47 |
| Msa0819420 | Msa1160500 | 0.800293 | 1.542851e-48 | -8.615850e-47 |
| Msa0819420 | Msa1160920 | 0.824170 | 9.331150e-54 | -8.615850e-47 |
| Msa0819420 | Msa1174530 | 0.804530 | 2.066595e-49 | -8.615850e-47 |
| Msa0819420 | Msa1184330 | 0.802049 | 6.746321e-49 | -8.615850e-47 |
| Msa0819420 | Msa1313300 | 0.802358 | 5.826253e-49 | -8.615850e-47 |
| Msa0819420 | Msa1356830 | 0.852432 | 4.635630e-61 | -8.615850e-47 |
| Msa0819420 | Msa1369150 | 0.803975 | 2.696879e-49 | -8.615850e-47 |
| Msa0819420 | Msa1437940 | 0.846936 | 1.587839e-59 | -8.615850e-47 |
| Msa0819420 | Msa1440960 | 0.821602 | 3.700833e-53 | -8.615850e-47 |
| Msa0819420 | Msa1445190 | 0.805565 | 1.255631e-49 | -8.615850e-47 |
| Msa0819420 | Msa1449930 | 0.823176 | 1.594372e-53 | -8.615850e-47 |
| Msa0136650 | Msa0819420 | 0.806235 | 9.076930e-50 | -8.615850e-47 |
| Msa0173890 | Msa0819420 | 0.850907 | 1.253138e-60 | -8.615850e-47 |
| Msa0174450 | Msa0819420 | 0.800325 | 1.519653e-48 | -8.615850e-47 |
| Msa0196190 | Msa0819420 | 0.811050 | 8.498065e-51 | -8.615850e-47 |
| Msa0206840 | Msa0819420 | 0.836349 | 9.856191e-57 | -8.615850e-47 |
| Msa0378720 | Msa0819420 | 0.820135 | 8.050479e-53 | -8.615850e-47 |
| Msa0405710 | Msa0819420 | 0.808570 | 2.902779e-50 | -8.615850e-47 |
| Msa0430260 | Msa0819420 | 0.813428 | 2.572952e-51 | -8.615850e-47 |
| Msa0447370 | Msa0819420 | 0.805749 | 1.148457e-49 | -8.615850e-47 |
| Msa0474730 | Msa0819420 | 0.810893 | 9.192610e-51 | -8.615850e-47 |
| Msa0249540 | Msa0819420 | 0.821287 | 4.375154e-53 | -8.615850e-47 |
| Msa0292400 | Msa0819420 | 0.806746 | 7.081919e-50 | -8.615850e-47 |
| Msa0307270 | Msa0819420 | 0.820388 | 7.041624e-53 | -8.615850e-47 |
| Msa0315980 | Msa0819420 | 0.840698 | 7.432662e-58 | -8.615850e-47 |
| Msa0500380 | Msa0819420 | 0.806215 | 9.166445e-50 | -8.615850e-47 |
| Msa0513160 | Msa0819420 | 0.809566 | 1.776416e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819420 | MtrunA17_Chr5g0438571 | 92.857 | 364 | 20 | 1 | 1 | 358 | 25 | 388 | 0.0 | 695 |
| Msa0819420 | MtrunA17_Chr6g0462191 | 29.032 | 186 | 106 | 6 | 67 | 234 | 94 | 271 | 4.05e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819420 | AT5G35670.1 | 38.325 | 394 | 163 | 11 | 2 | 334 | 27 | 401 | 5.79e-67 | 218 |
| Msa0819420 | AT3G52290.1 | 32.948 | 173 | 101 | 4 | 80 | 241 | 107 | 275 | 2.77e-13 | 71.2 |
| Msa0819420 | AT2G26410.2 | 34.078 | 179 | 97 | 6 | 80 | 242 | 147 | 320 | 1.29e-12 | 69.3 |
| Msa0819420 | AT2G26410.1 | 34.078 | 179 | 97 | 6 | 80 | 242 | 147 | 320 | 1.29e-12 | 69.3 |
| Msa0819420 | AT3G09710.1 | 27.969 | 261 | 160 | 8 | 35 | 282 | 66 | 311 | 1.87e-12 | 68.6 |
Find 48 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTGGAGTTTGAATT+TGG | 0.239655 | 5_3:-55896773 | None:intergenic |
| TTCTTCTTCATTCAATGATT+TGG | 0.248388 | 5_3:-55896786 | None:intergenic |
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5_3:+55896704 | Msa0819420:CDS |
| ACATAATTAGTTGACTTATT+TGG | 0.257575 | 5_3:-55899638 | None:intergenic |
| CTCAACAGTTTCTTCACTCT+TGG | 0.300918 | 5_3:-55896732 | None:intergenic |
| TTGAAATTGTTAAGCTTTGA+TGG | 0.308441 | 5_3:+55896167 | Msa0819420:five_prime_UTR |
| ATATTAAGATGTAATTATAA+TGG | 0.340152 | 5_3:+55899785 | Msa0819420:three_prime_UTR |
| GTCTTGCTTACATCTTGCTT+TGG | 0.351199 | 5_3:-55899541 | None:intergenic |
| CTTTGATGGGTTTCACTGTT+GGG | 0.384078 | 5_3:+55896181 | Msa0819420:five_prime_UTR |
| GAGATCATAAGCTCAGAAAA+TGG | 0.385879 | 5_3:+55897622 | Msa0819420:CDS |
| AAGTCCAGACAGAAAATCTA+TGG | 0.389860 | 5_3:+55897672 | Msa0819420:CDS |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5_3:-55896696 | None:intergenic |
| GGCTTATGCTTTCTCACAAC+AGG | 0.400902 | 5_3:+55898273 | Msa0819420:CDS |
| TTAAAATTAGTCTTCATTGT+TGG | 0.418324 | 5_3:-55898758 | None:intergenic |
| GCTTTGATGGGTTTCACTGT+TGG | 0.430356 | 5_3:+55896180 | Msa0819420:five_prime_UTR |
| ACATCAGTTGAAGTACAAAC+AGG | 0.432498 | 5_3:+55897697 | Msa0819420:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5_3:-55898815 | None:intergenic |
| ATCAGCATATAGAAGTTTCA+AGG | 0.448132 | 5_3:+55896826 | Msa0819420:CDS |
| AACTAAAGCAATAAAGCAAA+AGG | 0.480169 | 5_3:+55897792 | Msa0819420:CDS |
| TGAAATTGTTAAGCTTTGAT+GGG | 0.504288 | 5_3:+55896168 | Msa0819420:five_prime_UTR |
| GATGGGTTTCACTGTTGGGT+TGG | 0.505076 | 5_3:+55896185 | Msa0819420:five_prime_UTR |
| ATTCATCCGAAAATAGAAGA+TGG | 0.516203 | 5_3:+55896573 | Msa0819420:CDS |
| GTAGCAATGTTTCGAAAATG+AGG | 0.518133 | 5_3:+55898206 | Msa0819420:CDS |
| AATGAGGATGCAAGACAGAA+TGG | 0.526107 | 5_3:+55898222 | Msa0819420:CDS |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5_3:-55898577 | None:intergenic |
| ACATGGAACAAAATATGAGC+TGG | 0.546448 | 5_3:+55898498 | Msa0819420:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5_3:-55897725 | None:intergenic |
| TGAGCTGGAGTTGGCTCGAA+AGG | 0.559271 | 5_3:+55898513 | Msa0819420:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5_3:+55898504 | Msa0819420:CDS |
| ATTTCATGATGAACATCCAA+AGG | 0.567837 | 5_3:+55898826 | Msa0819420:CDS |
| AAGCTAGGAGAACTGTGTCT+AGG | 0.575861 | 5_3:+55898780 | Msa0819420:CDS |
| CTCATTACTAGAAGCTCTGA+GGG | 0.578397 | 5_3:-55899709 | None:intergenic |
| TCGAAAGGTGGATGGCAACT+CGG | 0.586917 | 5_3:+55898528 | Msa0819420:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5_3:-55896640 | None:intergenic |
| GTCTTCTCAAGAAATCATGT+TGG | 0.603751 | 5_3:+55896216 | Msa0819420:five_prime_UTR |
| AACAAGGAGAGAAAGAGCAC+TGG | 0.604548 | 5_3:+55898252 | Msa0819420:CDS |
| CTAGGAGAACTGTGTCTAGG+AGG | 0.606464 | 5_3:+55898783 | Msa0819420:CDS |
| GAGTTGGCTCGAAAGGTGGA+TGG | 0.611180 | 5_3:+55898520 | Msa0819420:CDS |
| GAATAGTTATCAAAATGAAG+TGG | 0.611561 | 5_3:-55898695 | None:intergenic |
| TTGCAGGTAAGCATGAAAGA+TGG | 0.613045 | 5_3:+55899502 | Msa0819420:intron |
| GCTGGAGTTGGCTCGAAAGG+TGG | 0.621737 | 5_3:+55898516 | Msa0819420:CDS |
| ACAGAATGGAAGCAGCAACA+AGG | 0.622814 | 5_3:+55898236 | Msa0819420:CDS |
| TCAGTTAAATCATACTTGTG+TGG | 0.635037 | 5_3:+55896599 | Msa0819420:CDS |
| CATCAGTTGAAGTACAAACA+GGG | 0.652318 | 5_3:+55897698 | Msa0819420:CDS |
| TGTGTCTACTAGTATTGAGT+GGG | 0.660229 | 5_3:+55899660 | Msa0819420:three_prime_UTR |
| ACTCATTACTAGAAGCTCTG+AGG | 0.665670 | 5_3:-55899710 | None:intergenic |
| GTGTGTCTACTAGTATTGAG+TGG | 0.680075 | 5_3:+55899659 | Msa0819420:three_prime_UTR |
| ACTAGCAAAACATAACAACA+TGG | 0.703514 | 5_3:+55898481 | Msa0819420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAGATGTAATTATAA+TGG | + | chr5_3:55899785-55899804 | Msa0819420:three_prime_UTR | 10.0% |
| !!! | TATCATTTATATGACTTTTA+TGG | + | chr5_3:55897047-55897066 | Msa0819420:intron | 15.0% |
| !!! | AAATATTTTTAAAGATCCAA+CGG | + | chr5_3:55897087-55897106 | Msa0819420:intron | 15.0% |
| !! | TTAATATTGAAAAAGATTGA+AGG | - | chr5_3:55897430-55897449 | None:intergenic | 15.0% |
| !!! | AAATACTATTTTTTTATGCA+TGG | - | chr5_3:55897540-55897559 | None:intergenic | 15.0% |
| !! | GTATAATTAATTAAGAAAAG+TGG | - | chr5_3:55898033-55898052 | None:intergenic | 15.0% |
| !! | ATCTATTTAAAAGTAATTGA+GGG | - | chr5_3:55898939-55898958 | None:intergenic | 15.0% |
| !!! | CTTTAAAACTAATTTTGTTA+TGG | - | chr5_3:55899351-55899370 | None:intergenic | 15.0% |
| !! | CATTAATTGATTACTTCAAT+TGG | + | chr5_3:55896862-55896881 | Msa0819420:intron | 20.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | - | chr5_3:55896974-55896993 | None:intergenic | 20.0% |
| !! | ATAAATGATAGTATTTGTGA+TGG | - | chr5_3:55897037-55897056 | None:intergenic | 20.0% |
| !!! | CATAATTTTTTGTGATATCA+CGG | + | chr5_3:55897262-55897281 | Msa0819420:intron | 20.0% |
| !! | ATGGAAATGGAAAAAATAAA+GGG | - | chr5_3:55897407-55897426 | None:intergenic | 20.0% |
| !!! | TTAAAATTAGTCTTCATTGT+TGG | - | chr5_3:55898761-55898780 | None:intergenic | 20.0% |
| !! | AATAAAGAAATTCTAACCTT+TGG | - | chr5_3:55898845-55898864 | None:intergenic | 20.0% |
| !! | TAGTACATTATATATGTTTG+TGG | + | chr5_3:55898899-55898918 | Msa0819420:intron | 20.0% |
| !! | GATCTATTTAAAAGTAATTG+AGG | - | chr5_3:55898940-55898959 | None:intergenic | 20.0% |
| !! | TTCATAGTATATCATAAACA+AGG | + | chr5_3:55899156-55899175 | Msa0819420:intron | 20.0% |
| !! | CATAAAAAATCTTGATGTTA+TGG | + | chr5_3:55899236-55899255 | Msa0819420:intron | 20.0% |
| !! | TTTGACACATTAAATGATAT+CGG | + | chr5_3:55899292-55899311 | Msa0819420:intron | 20.0% |
| !!! | ACATAATTAGTTGACTTATT+TGG | - | chr5_3:55899641-55899660 | None:intergenic | 20.0% |
| !! | TTGAAATTGTTAAGCTTTGA+TGG | + | chr5_3:55896167-55896186 | Msa0819420:five_prime_UTR | 25.0% |
| !! | TGAAATTGTTAAGCTTTGAT+GGG | + | chr5_3:55896168-55896187 | Msa0819420:five_prime_UTR | 25.0% |
| ! | TGATGTTATAGCTAAAATTG+CGG | + | chr5_3:55896433-55896452 | Msa0819420:intron | 25.0% |
| ! | ACAAAGAATGAGAACATAAT+TGG | - | chr5_3:55896484-55896503 | None:intergenic | 25.0% |
| !! | TGATATCCATCTTCTATTTT+CGG | - | chr5_3:55896582-55896601 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | - | chr5_3:55896776-55896795 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATTCAATGATT+TGG | - | chr5_3:55896789-55896808 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | - | chr5_3:55896917-55896936 | None:intergenic | 25.0% |
| !! | AAACTTTAAAGGTAAACTCA+TGG | - | chr5_3:55896941-55896960 | None:intergenic | 25.0% |
| !! | TGACAATGTAAAACGTTTTA+AGG | - | chr5_3:55897012-55897031 | None:intergenic | 25.0% |
| ! | CAAAAAATTATGGTCAAACA+CGG | - | chr5_3:55897254-55897273 | None:intergenic | 25.0% |
| ! | CGTGATATCACAAAAAATTA+TGG | - | chr5_3:55897264-55897283 | None:intergenic | 25.0% |
| !!! | CATAAAAAGGTTTTAAACTG+TGG | - | chr5_3:55897293-55897312 | None:intergenic | 25.0% |
| !!! | CACAGTTTAAAACCTTTTTA+TGG | + | chr5_3:55897291-55897310 | Msa0819420:intron | 25.0% |
| ! | TGGAAATGGAAAAAATAAAG+GGG | - | chr5_3:55897406-55897425 | None:intergenic | 25.0% |
| ! | GATGGAAATGGAAAAAATAA+AGG | - | chr5_3:55897408-55897427 | None:intergenic | 25.0% |
| ! | TATTGAAAAAGATTGAAGGA+TGG | - | chr5_3:55897426-55897445 | None:intergenic | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | - | chr5_3:55897728-55897747 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | + | chr5_3:55897727-55897746 | Msa0819420:CDS | 25.0% |
| ! | AACTAAAGCAATAAAGCAAA+AGG | + | chr5_3:55897792-55897811 | Msa0819420:CDS | 25.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | + | chr5_3:55897942-55897961 | Msa0819420:intron | 25.0% |
| !!! | CTTGAATTTTAAAACATTGC+TGG | - | chr5_3:55897973-55897992 | None:intergenic | 25.0% |
| ! | ACTTAGACGAAGTATAATAT+AGG | + | chr5_3:55898102-55898121 | Msa0819420:intron | 25.0% |
| !! | GAGTAACATTGAAATTTTTC+AGG | + | chr5_3:55898159-55898178 | Msa0819420:intron | 25.0% |
| !! | AACCGATTTATTCTCTAAAA+CGG | + | chr5_3:55898328-55898347 | Msa0819420:intron | 25.0% |
| !!! | AACCGTTTTAGAGAATAAAT+CGG | - | chr5_3:55898333-55898352 | None:intergenic | 25.0% |
| ! | AGTTTGACATAGTAAATTCA+AGG | + | chr5_3:55898378-55898397 | Msa0819420:intron | 25.0% |
| ! | GTTTGACATAGTAAATTCAA+GGG | + | chr5_3:55898379-55898398 | Msa0819420:intron | 25.0% |
| ! | GAATAGTTATCAAAATGAAG+TGG | - | chr5_3:55898698-55898717 | None:intergenic | 25.0% |
| !!! | TGAAGACTAATTTTAAAGCT+AGG | + | chr5_3:55898765-55898784 | Msa0819420:CDS | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | - | chr5_3:55898818-55898837 | None:intergenic | 25.0% |
| ! | TTCATAAATCATCTAAGTCA+AGG | + | chr5_3:55898868-55898887 | Msa0819420:intron | 25.0% |
| ! | TAAAGTGATTGAATATGTGT+TGG | - | chr5_3:55899080-55899099 | None:intergenic | 25.0% |
| !!! | ATTGTTGATTTGAAATCAGA+CGG | + | chr5_3:55899378-55899397 | Msa0819420:intron | 25.0% |
| !!! | TATCATTTTTATGTTGTTGC+AGG | + | chr5_3:55899486-55899505 | Msa0819420:intron | 25.0% |
| ATTCATCCGAAAATAGAAGA+TGG | + | chr5_3:55896573-55896592 | Msa0819420:CDS | 30.0% | |
| TCAGTTAAATCATACTTGTG+TGG | + | chr5_3:55896599-55896618 | Msa0819420:CDS | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | - | chr5_3:55896699-55896718 | None:intergenic | 30.0% | |
| !! | GAAGATTTGTTGAGTGATAA+AGG | + | chr5_3:55896704-55896723 | Msa0819420:CDS | 30.0% |
| ATCAGCATATAGAAGTTTCA+AGG | + | chr5_3:55896826-55896845 | Msa0819420:CDS | 30.0% | |
| ACACATTGATCTCCATAAAA+AGG | - | chr5_3:55897306-55897325 | None:intergenic | 30.0% | |
| AAAAGATTGAAGGATGGAAA+TGG | - | chr5_3:55897420-55897439 | None:intergenic | 30.0% | |
| CATGCTAAATATTTCAGTTG+AGG | + | chr5_3:55897587-55897606 | Msa0819420:intron | 30.0% | |
| AGACGAAGTATAATATAGGA+CGG | + | chr5_3:55898106-55898125 | Msa0819420:intron | 30.0% | |
| !!! | TTGAAATTTTTCAGGAAGAC+TGG | + | chr5_3:55898167-55898186 | Msa0819420:intron | 30.0% |
| !!! | TGAAATTTTTCAGGAAGACT+GGG | + | chr5_3:55898168-55898187 | Msa0819420:intron | 30.0% |
| ACTAGCAAAACATAACAACA+TGG | + | chr5_3:55898481-55898500 | Msa0819420:CDS | 30.0% | |
| !! | ACAAGATTTTTAGATGCTTC+TGG | + | chr5_3:55898635-55898654 | Msa0819420:CDS | 30.0% |
| ATTTCATGATGAACATCCAA+AGG | + | chr5_3:55898826-55898845 | Msa0819420:CDS | 30.0% | |
| GAAAACGTGTTTAGTACATA+TGG | + | chr5_3:55899013-55899032 | Msa0819420:intron | 30.0% | |
| ! | AGTTCTAATTATAGGTGATC+CGG | - | chr5_3:55899264-55899283 | None:intergenic | 30.0% |
| ! | CTACGTAGAGTTCTAATTAT+AGG | - | chr5_3:55899272-55899291 | None:intergenic | 30.0% |
| GTCTTCTCAAGAAATCATGT+TGG | + | chr5_3:55896216-55896235 | Msa0819420:five_prime_UTR | 35.0% | |
| GAGAGAAGCAATACAAATTG+AGG | - | chr5_3:55896264-55896283 | None:intergenic | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | + | chr5_3:55896906-55896925 | Msa0819420:intron | 35.0% | |
| !! | ACCAACTTTTTCTTGGAATG+AGG | - | chr5_3:55896910-55896929 | None:intergenic | 35.0% |
| GCATCACAAGCAAACTTTAA+AGG | - | chr5_3:55896952-55896971 | None:intergenic | 35.0% | |
| !!! | GTAAAACGTTTTAAGGTGCA+TGG | - | chr5_3:55897005-55897024 | None:intergenic | 35.0% |
| TGTCAATCAATCATAACCGT+TGG | - | chr5_3:55897106-55897125 | None:intergenic | 35.0% | |
| GAGATCATAAGCTCAGAAAA+TGG | + | chr5_3:55897622-55897641 | Msa0819420:CDS | 35.0% | |
| AAGTCCAGACAGAAAATCTA+TGG | + | chr5_3:55897672-55897691 | Msa0819420:CDS | 35.0% | |
| ACATCAGTTGAAGTACAAAC+AGG | + | chr5_3:55897697-55897716 | Msa0819420:CDS | 35.0% | |
| CATCAGTTGAAGTACAAACA+GGG | + | chr5_3:55897698-55897717 | Msa0819420:CDS | 35.0% | |
| ! | TTTACAACAGTTTTCAGCAC+AGG | + | chr5_3:55897764-55897783 | Msa0819420:CDS | 35.0% |
| ! | TCTGAACTAGCACATGATTT+TGG | + | chr5_3:55897843-55897862 | Msa0819420:intron | 35.0% |
| ! | TTCAAGTGTGATGATGATGT+TGG | + | chr5_3:55897987-55898006 | Msa0819420:intron | 35.0% |
| TGGAAGTTTAATCTTCCACT+AGG | + | chr5_3:55898007-55898026 | Msa0819420:intron | 35.0% | |
| AATTAAGAAAAGTGGCCTAG+TGG | - | chr5_3:55898025-55898044 | None:intergenic | 35.0% | |
| GAAGTATAATATAGGACGGA+GGG | + | chr5_3:55898110-55898129 | Msa0819420:intron | 35.0% | |
| GTAGCAATGTTTCGAAAATG+AGG | + | chr5_3:55898206-55898225 | Msa0819420:CDS | 35.0% | |
| !! | ATTCTCTAAAACGGTTCATG+AGG | + | chr5_3:55898337-55898356 | Msa0819420:intron | 35.0% |
| ! | TATTTTACAACCGTTGTCGA+GGG | - | chr5_3:55898419-55898438 | None:intergenic | 35.0% |
| ACATGGAACAAAATATGAGC+TGG | + | chr5_3:55898498-55898517 | Msa0819420:CDS | 35.0% | |
| AACAAAATATGAGCTGGAGT+TGG | + | chr5_3:55898504-55898523 | Msa0819420:CDS | 35.0% | |
| !! | AGATTTTTAGATGCTTCTGG+TGG | + | chr5_3:55898638-55898657 | Msa0819420:CDS | 35.0% |
| AGTGATTGAATATGTGTTGG+TGG | - | chr5_3:55899077-55899096 | None:intergenic | 35.0% | |
| !!! | AAGGTTTTAAACCACGATTG+TGG | + | chr5_3:55899175-55899194 | Msa0819420:intron | 35.0% |
| ! | TTAAACCACGATTGTGGTTT+TGG | + | chr5_3:55899181-55899200 | Msa0819420:intron | 35.0% |
| AAATCTTGATGTTATGGACC+CGG | + | chr5_3:55899242-55899261 | Msa0819420:intron | 35.0% | |
| GTTCTAATTATAGGTGATCC+GGG | - | chr5_3:55899263-55899282 | None:intergenic | 35.0% | |
| TGTGCAATAACTACGTCATT+CGG | - | chr5_3:55899417-55899436 | None:intergenic | 35.0% | |
| !!! | ATCTTGCTTTGGTTTTTGCT+TGG | - | chr5_3:55899533-55899552 | None:intergenic | 35.0% |
| ! | TGTGTCTACTAGTATTGAGT+GGG | + | chr5_3:55899660-55899679 | Msa0819420:three_prime_UTR | 35.0% |
| !! | CTTTGATGGGTTTCACTGTT+GGG | + | chr5_3:55896181-55896200 | Msa0819420:five_prime_UTR | 40.0% |
| AAGCTGAATCTTCTTCTGCA+AGG | - | chr5_3:55896643-55896662 | None:intergenic | 40.0% | |
| CTCAACAGTTTCTTCACTCT+TGG | - | chr5_3:55896735-55896754 | None:intergenic | 40.0% | |
| ! | AGTTTGCTTGTGATGCCAAA+AGG | + | chr5_3:55896956-55896975 | Msa0819420:intron | 40.0% |
| AAGATTATAACTGCGACGTC+AGG | + | chr5_3:55897172-55897191 | Msa0819420:intron | 40.0% | |
| AGATTATAACTGCGACGTCA+GGG | + | chr5_3:55897173-55897192 | Msa0819420:intron | 40.0% | |
| TATGGAGATCAATGTGTGTG+TGG | + | chr5_3:55897309-55897328 | Msa0819420:intron | 40.0% | |
| ! | GTAGCCATAGATTTTCTGTC+TGG | - | chr5_3:55897679-55897698 | None:intergenic | 40.0% |
| CGAAGTATAATATAGGACGG+AGG | + | chr5_3:55898109-55898128 | Msa0819420:intron | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | + | chr5_3:55898222-55898241 | Msa0819420:CDS | 40.0% | |
| AATTCAGATTCCCTCGACAA+CGG | + | chr5_3:55898406-55898425 | Msa0819420:intron | 40.0% | |
| ! | GTATTTTACAACCGTTGTCG+AGG | - | chr5_3:55898420-55898439 | None:intergenic | 40.0% |
| TTTCATACTGCTTCATCGCA+TGG | - | chr5_3:55898580-55898599 | None:intergenic | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | + | chr5_3:55898659-55898678 | Msa0819420:CDS | 40.0% | |
| CACATGTAGTTACATTCACG+TGG | - | chr5_3:55899054-55899073 | None:intergenic | 40.0% | |
| CATATACTAGCACATGGACT+TGG | - | chr5_3:55899444-55899463 | None:intergenic | 40.0% | |
| CGTTGACATATACTAGCACA+TGG | - | chr5_3:55899450-55899469 | None:intergenic | 40.0% | |
| TTGCAGGTAAGCATGAAAGA+TGG | + | chr5_3:55899502-55899521 | Msa0819420:intron | 40.0% | |
| GTCTTGCTTACATCTTGCTT+TGG | - | chr5_3:55899544-55899563 | None:intergenic | 40.0% | |
| ! | GTGTGTCTACTAGTATTGAG+TGG | + | chr5_3:55899659-55899678 | Msa0819420:three_prime_UTR | 40.0% |
| ! | CTCATTACTAGAAGCTCTGA+GGG | - | chr5_3:55899712-55899731 | None:intergenic | 40.0% |
| ACTCATTACTAGAAGCTCTG+AGG | - | chr5_3:55899713-55899732 | None:intergenic | 40.0% | |
| !! | GCTTTGATGGGTTTCACTGT+TGG | + | chr5_3:55896180-55896199 | Msa0819420:five_prime_UTR | 45.0% |
| ! | ACCTCAAAGCATTAGCGTTG+AGG | + | chr5_3:55896362-55896381 | Msa0819420:intron | 45.0% |
| ACCTCAACGCTAATGCTTTG+AGG | - | chr5_3:55896366-55896385 | None:intergenic | 45.0% | |
| ! | ACCTCAAAGCATTAGCGTTG+AGG | + | chr5_3:55896362-55896381 | Msa0819420:intron | 45.0% |
| ACCTCAACGCTAATGCTTTG+AGG | - | chr5_3:55896366-55896385 | None:intergenic | 45.0% | |
| ATGGTCAAACACGGTTGACA+TGG | - | chr5_3:55897245-55897264 | None:intergenic | 45.0% | |
| ACAGAATGGAAGCAGCAACA+AGG | + | chr5_3:55898236-55898255 | Msa0819420:CDS | 45.0% | |
| ! | AACAAGGAGAGAAAGAGCAC+TGG | + | chr5_3:55898252-55898271 | Msa0819420:CDS | 45.0% |
| GGCTTATGCTTTCTCACAAC+AGG | + | chr5_3:55898273-55898292 | Msa0819420:CDS | 45.0% | |
| AAGCTAGGAGAACTGTGTCT+AGG | + | chr5_3:55898780-55898799 | Msa0819420:CDS | 45.0% | |
| GACAACCAAAACCACAATCG+TGG | - | chr5_3:55899189-55899208 | None:intergenic | 45.0% | |
| !! | AATTATTATAAAATAAAACT+TGG | + | chr5_3:55897877-55897896 | Msa0819420:intron | 5.0% |
| !! | TAAAAATGATATTTATAATA+TGG | - | chr5_3:55899477-55899496 | None:intergenic | 5.0% |
| ! | GATGGGTTTCACTGTTGGGT+TGG | + | chr5_3:55896185-55896204 | Msa0819420:five_prime_UTR | 50.0% |
| TATTCGCAGCTGCAACAACG+AGG | - | chr5_3:55898447-55898466 | None:intergenic | 50.0% | |
| TCGAAAGGTGGATGGCAACT+CGG | + | chr5_3:55898528-55898547 | Msa0819420:CDS | 50.0% | |
| CTAGGAGAACTGTGTCTAGG+AGG | + | chr5_3:55898783-55898802 | Msa0819420:CDS | 50.0% | |
| ! | GACGGAGGGAGTGTGACATA+AGG | + | chr5_3:55898124-55898143 | Msa0819420:intron | 55.0% |
| !! | TGAGCTGGAGTTGGCTCGAA+AGG | + | chr5_3:55898513-55898532 | Msa0819420:CDS | 55.0% |
| !! | GAGTTGGCTCGAAAGGTGGA+TGG | + | chr5_3:55898520-55898539 | Msa0819420:CDS | 55.0% |
| !! | GCTGGAGTTGGCTCGAAAGG+TGG | + | chr5_3:55898516-55898535 | Msa0819420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55896155 | 55899884 | 55896155 | ID=Msa0819420;Name=Msa0819420 |
| chr5_3 | mRNA | 55896155 | 55899884 | 55896155 | ID=Msa0819420-mRNA-1;Parent=Msa0819420;Name=Msa0819420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=148|1|1|1|0.66|0.42|7|258|365 |
| chr5_3 | exon | 55896155 | 55896254 | 55896155 | ID=Msa0819420-mRNA-1:exon:16877;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55896515 | 55896847 | 55896515 | ID=Msa0819420-mRNA-1:exon:16878;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55897604 | 55897813 | 55897604 | ID=Msa0819420-mRNA-1:exon:16879;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55898181 | 55898294 | 55898181 | ID=Msa0819420-mRNA-1:exon:16880;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55898458 | 55898847 | 55898458 | ID=Msa0819420-mRNA-1:exon:16881;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55899508 | 55899848 | 55899508 | ID=Msa0819420-mRNA-1:exon:16882;Parent=Msa0819420-mRNA-1 |
| chr5_3 | exon | 55899869 | 55899884 | 55899869 | ID=Msa0819420-mRNA-1:exon:16883;Parent=Msa0819420-mRNA-1 |
| chr5_3 | five_prime_UTR | 55896155 | 55896254 | 55896155 | ID=Msa0819420-mRNA-1:five_prime_utr;Parent=Msa0819420-mRNA-1 |
| chr5_3 | five_prime_UTR | 55896515 | 55896562 | 55896515 | ID=Msa0819420-mRNA-1:five_prime_utr;Parent=Msa0819420-mRNA-1 |
| chr5_3 | CDS | 55896563 | 55896847 | 55896563 | ID=Msa0819420-mRNA-1:cds;Parent=Msa0819420-mRNA-1 |
| chr5_3 | CDS | 55897604 | 55897813 | 55897604 | ID=Msa0819420-mRNA-1:cds;Parent=Msa0819420-mRNA-1 |
| chr5_3 | CDS | 55898181 | 55898294 | 55898181 | ID=Msa0819420-mRNA-1:cds;Parent=Msa0819420-mRNA-1 |
| chr5_3 | CDS | 55898458 | 55898847 | 55898458 | ID=Msa0819420-mRNA-1:cds;Parent=Msa0819420-mRNA-1 |
| chr5_3 | CDS | 55899508 | 55899606 | 55899508 | ID=Msa0819420-mRNA-1:cds;Parent=Msa0819420-mRNA-1 |
| chr5_3 | three_prime_UTR | 55899607 | 55899848 | 55899607 | ID=Msa0819420-mRNA-1:three_prime_utr;Parent=Msa0819420-mRNA-1 |
| chr5_3 | three_prime_UTR | 55899869 | 55899884 | 55899869 | ID=Msa0819420-mRNA-1:three_prime_utr;Parent=Msa0819420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
