AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0859820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0859820 MtrunA17_Chr5g0438891 80.465 215 1 2 24 199 14 226 1.08e-116 337
Msa0859820 MtrunA17_Chr5g0438891 42.857 84 42 1 47 130 263 340 3.85e-14 70.1
Msa0859820 MtrunA17_Chr7g0249221 35.961 203 75 7 42 196 23 218 1.39e-28 110
Msa0859820 MtrunA17_Chr7g0249221 37.143 105 40 4 46 141 275 362 6.64e-13 66.2
Msa0859820 MtrunA17_Chr4g0066941 60.000 85 27 2 46 129 43 121 2.54e-27 107
Msa0859820 MtrunA17_Chr4g0066941 43.038 79 39 1 47 125 333 405 2.48e-14 70.9
Msa0859820 MtrunA17_Chr2g0286151 55.172 87 31 2 46 130 44 124 2.54e-25 102
Msa0859820 MtrunA17_Chr1g0195891 39.286 112 55 3 21 131 27 126 1.49e-22 93.2
Msa0859820 MtrunA17_Chr1g0195891 37.912 182 88 7 28 196 69 238 1.33e-21 90.5
Msa0859820 MtrunA17_Chr8g0356241 35.766 137 75 3 36 169 177 303 8.41e-19 83.6
Msa0859820 MtrunA17_Chr8g0356241 39.326 89 40 2 46 126 138 220 3.39e-17 79.0
Msa0859820 MtrunA17_Chr8g0356241 42.045 88 35 3 46 125 395 474 1.48e-16 77.0
Msa0859820 MtrunA17_Chr4g0058011 32.386 176 99 8 26 198 261 419 1.04e-18 83.6
Msa0859820 MtrunA17_Chr4g0058011 42.529 87 38 4 46 128 458 536 4.69e-16 75.9
Msa0859820 MtrunA17_Chr3g0116431 31.472 197 85 6 46 198 171 361 1.40e-17 80.1
Msa0859820 MtrunA17_Chr3g0116431 42.857 84 36 3 46 125 400 475 1.98e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0859820 AT1G04990.5 40.254 236 90 5 3 199 5 228 1.38e-48 162
Msa0859820 AT2G32930.1 40.984 244 84 7 3 199 1 231 1.73e-48 164
Msa0859820 AT1G04990.1 40.254 236 90 5 3 199 5 228 3.02e-48 162
Msa0859820 AT1G04990.6 40.254 236 90 5 3 199 5 228 3.02e-48 162
Msa0859820 AT1G04990.2 40.254 236 90 5 3 199 5 228 3.02e-48 162
Msa0859820 AT2G32930.2 40.323 248 84 7 3 199 1 235 9.97e-48 162
Msa0859820 AT2G32930.3 39.819 221 70 6 29 199 1 208 2.96e-41 144
Msa0859820 AT3G02830.1 47.321 112 48 3 23 133 18 119 1.54e-29 113
Msa0859820 AT3G02830.1 34.211 114 64 3 39 150 264 368 4.20e-15 73.2
Msa0859820 AT3G02830.2 52.577 97 39 2 38 133 9 99 2.92e-29 112
Msa0859820 AT3G02830.2 34.211 114 64 3 39 150 244 348 4.59e-15 72.8
Msa0859820 AT5G18550.3 52.632 95 37 2 46 138 16 104 6.56e-29 111
Msa0859820 AT5G18550.3 41.250 80 40 2 46 124 265 338 3.02e-12 65.1
Msa0859820 AT3G06410.1 46.281 121 55 3 22 140 29 141 7.49e-29 112
Msa0859820 AT3G06410.1 42.683 82 43 2 43 124 301 378 1.67e-13 68.6
Msa0859820 AT5G18550.1 52.632 95 37 2 46 138 48 136 7.61e-29 112
Msa0859820 AT5G18550.1 41.250 80 40 2 46 124 297 370 3.21e-12 64.7
Msa0859820 AT5G18550.2 52.632 95 37 2 46 138 48 136 8.39e-29 111
Msa0859820 AT5G18550.4 52.632 95 37 2 46 138 48 136 1.02e-28 111
Msa0859820 AT5G18550.4 41.250 80 40 2 46 124 297 370 4.03e-12 64.7
Msa0859820 AT5G16540.4 52.688 93 37 2 46 137 18 104 1.30e-28 108
Msa0859820 AT5G16540.2 52.688 93 37 2 46 137 39 125 1.60e-28 109
Msa0859820 AT5G16540.2 34.375 96 46 2 39 131 233 314 4.21e-14 70.1
Msa0859820 AT5G16540.1 52.688 93 37 2 46 137 39 125 1.77e-28 109
Msa0859820 AT5G16540.1 36.842 95 52 2 39 131 233 321 2.61e-15 73.6
Msa0859820 AT5G16540.3 52.688 93 37 2 46 137 18 104 2.32e-28 109
Msa0859820 AT5G16540.3 36.842 95 52 2 39 131 212 300 3.34e-15 73.2
Msa0859820 AT2G47850.2 44.545 110 44 3 21 129 27 120 8.95e-27 106
Msa0859820 AT2G47850.2 40.000 80 44 1 46 125 260 335 3.99e-15 73.2
Msa0859820 AT2G47850.1 44.545 110 44 3 21 129 27 120 1.68e-26 105
Msa0859820 AT2G47850.1 36.782 87 51 1 39 125 279 361 5.85e-15 72.8
Msa0859820 AT2G47850.3 44.545 110 44 3 21 129 27 120 1.68e-26 105
Msa0859820 AT2G47850.3 36.782 87 51 1 39 125 279 361 5.85e-15 72.8
Msa0859820 AT1G04990.4 40.411 146 69 5 57 199 17 147 4.32e-25 99.8
Msa0859820 AT1G04990.3 40.411 146 69 5 57 199 17 147 4.49e-25 99.8
Msa0859820 AT3G12680.1 51.852 81 32 2 46 126 222 295 1.92e-22 94.4
Msa0859820 AT3G12680.1 40.000 90 43 2 43 125 414 499 1.16e-17 80.9
Msa0859820 AT3G12680.1 40.217 92 42 2 46 130 171 256 1.40e-17 80.5
Msa0859820 AT3G12680.1 31.061 132 55 4 28 129 245 370 6.15e-15 72.8
Msa0859820 AT1G48195.1 48.148 81 34 2 46 124 6 80 1.53e-17 74.3
Msa0859820 AT5G63260.1 34.091 176 100 7 27 199 130 292 1.56e-17 80.1
Msa0859820 AT5G63260.1 38.750 80 43 2 46 124 331 405 7.90e-13 66.6
Msa0859820 AT5G63260.2 34.066 182 99 8 21 199 145 308 1.57e-17 80.1
Msa0859820 AT5G63260.2 38.750 80 43 2 46 124 347 421 7.39e-13 66.6
Msa0859820 AT3G48440.1 28.708 209 82 8 46 199 107 303 1.04e-15 75.1
Msa0859820 AT3G48440.1 43.902 82 42 3 46 127 343 420 7.91e-14 69.7
Msa0859820 AT2G47850.4 40.000 80 44 1 46 125 164 239 2.12e-15 73.6
Msa0859820 AT1G29600.1 32.500 120 60 6 43 160 119 219 1.25e-12 65.5
Msa0859820 AT1G29600.2 32.500 120 60 6 43 160 125 225 1.28e-12 65.5
Msa0859820 AT1G29570.1 46.552 58 23 1 37 94 43 92 8.59e-11 60.5

Find 129 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTATCCTTTCTTT+AGG 0.127413 5_4:+58276433 None:intergenic
TTTATCTCTTGGGGTCAATT+TGG 0.227511 5_4:-58275545 Msa0859820:three_prime_UTR
CCGGCGGGAGAGACACTTTC+TGG 0.243331 5_4:-58276565 Msa0859820:three_prime_UTR
AGAAAAGACTGGTTCTGTTT+TGG 0.244589 5_4:+58276810 None:intergenic
AGACCCAGTTCTCATGTAAT+AGG 0.260132 5_4:+58277339 None:intergenic
AATTGACCCCAAGAGATAAA+AGG 0.275869 5_4:+58275548 None:intergenic
AGAACTGGGTCTTGCAAGTT+TGG 0.276971 5_4:-58277328 Msa0859820:CDS
AGATTTCAGGTTACTCAATA+TGG 0.278926 5_4:-58278642 Msa0859820:intron
TGGACAGTTGAAAGCCTTCT+TGG 0.292560 5_4:+58275935 None:intergenic
TCTGGTTGCTCAGGTCTATC+TGG 0.304316 5_4:+58276517 None:intergenic
AAGATACATTAAAATTAAAA+AGG 0.318889 5_4:-58275429 None:intergenic
AGCACCGGAACATGCAAATA+TGG 0.322651 5_4:-58276478 Msa0859820:three_prime_UTR
TTTGTGCTATCCTTTCTTTA+GGG 0.324288 5_4:+58276434 None:intergenic
TGCTCTTATTACAGAATCTA+TGG 0.326952 5_4:-58276073 Msa0859820:three_prime_UTR
ACATAGCCAAACATCCTAAA+AGG 0.329287 5_4:+58276767 None:intergenic
TTCGTATTGCAGAAGCTATT+CGG 0.340006 5_4:-58278998 Msa0859820:intron
TACATGCATTCAGTGGTTAC+TGG 0.345380 5_4:-58276721 Msa0859820:three_prime_UTR
ATTTGAGCGCCGAATGTGAT+TGG 0.349002 5_4:+58276845 None:intergenic
CCGAGAATGTCATATTTATC+TGG 0.351902 5_4:-58277169 Msa0859820:CDS
ACCTTCGACCGAGTCTTTAC+AGG 0.352984 5_4:-58275798 Msa0859820:three_prime_UTR
ATCTATGGAGTATGCAAGTT+TGG 0.357289 5_4:-58276058 Msa0859820:three_prime_UTR
CCAGATAAATATGACATTCT+CGG 0.368337 5_4:+58277169 None:intergenic
CCACAACAGGCAGCTTCCTT+TGG 0.370576 5_4:-58277283 Msa0859820:CDS
TCCACAACTGTTACTTCATC+AGG 0.377937 5_4:-58277229 Msa0859820:CDS
GCATTATGCCTGCGCTGAGC+TGG 0.382644 5_4:-58277099 Msa0859820:CDS
GAGGGAGGGGACGCCGCCAC+TGG 0.385507 5_4:+58277250 None:intergenic
CTATCCTTTCTTTAGGGTGG+TGG 0.386879 5_4:+58276440 None:intergenic
ATAAAACCAGTAGGCATTGC+AGG 0.387637 5_4:+58276619 None:intergenic
TGTCCCTATTACATGAGAAC+TGG 0.394120 5_4:-58277343 Msa0859820:CDS
TGCATGAATAGAGTTTCTAT+TGG 0.407759 5_4:-58275472 Msa0859820:three_prime_UTR
CTGCAGAATTGCAGATCAAA+AGG 0.410499 5_4:+58275684 None:intergenic
CATTGATTTCCAATCACATT+CGG 0.410566 5_4:-58276854 Msa0859820:three_prime_UTR
GAATTTCACTCAGTATTTGT+AGG 0.414918 5_4:+58275514 None:intergenic
CTCAAATAATATACGCAGTC+AGG 0.416206 5_4:+58278900 None:intergenic
CTGACTGCGTATATTATTTG+AGG 0.418766 5_4:-58278899 Msa0859820:CDS
AAAGCCTTCTTGGATTAGTA+AGG 0.427107 5_4:+58275945 None:intergenic
TATTTACAGTCTGGTTGCTC+AGG 0.430194 5_4:+58276508 None:intergenic
GCCTCAATCAATGCCTTATC+CGG 0.436673 5_4:-58278937 Msa0859820:CDS
AATGCACTTACAGGTCTCAT+AGG 0.440267 5_4:+58276385 None:intergenic
CTCATAAAGTATTTACAGTC+TGG 0.442202 5_4:+58276499 None:intergenic
AAGAACTTCCTGAGAGAGTT+GGG 0.442954 5_4:-58278617 Msa0859820:CDS
GCAGGAAACCCACCAGCATA+TGG 0.444203 5_4:+58277202 None:intergenic
TCAGGTTGCCCAACTCTCTC+AGG 0.445004 5_4:+58278609 None:intergenic
TTCTGAGAGATAGCCACAAC+TGG 0.446204 5_4:+58276013 None:intergenic
ATTGACCCCAAGAGATAAAA+GGG 0.454943 5_4:+58275549 None:intergenic
AATAAACATACCTCACAATC+AGG 0.458208 5_4:+58278591 None:intergenic
GACCCAGTTCTCATGTAATA+GGG 0.459797 5_4:+58277340 None:intergenic
GGCATAATGCCTTGTGAAGA+AGG 0.459870 5_4:+58277112 None:intergenic
CAACAGGCAGCTTCCTTTGG+AGG 0.460678 5_4:-58277280 Msa0859820:CDS
ATATACTGATTAACCTGGTA+TGG 0.468136 5_4:-58276997 Msa0859820:three_prime_UTR
AGATCCATATTTGCATGTTC+CGG 0.472187 5_4:+58276474 None:intergenic
CCATCTGGTGATAACATTGA+AGG 0.474193 5_4:-58279620 Msa0859820:intron
AGCTTGTTTAGATGAATCTT+CGG 0.476106 5_4:+58275844 None:intergenic
TGCGTATATTATTTGAGGAC+TGG 0.478797 5_4:-58278894 Msa0859820:CDS
TCACCAGGTCGATCCGGATA+AGG 0.480066 5_4:+58278924 None:intergenic
GGACTGGAATGTGTGGTTAC+GGG 0.482004 5_4:-58278878 Msa0859820:CDS
CAAGTTTCATCATCCACAAC+AGG 0.488215 5_4:-58277296 Msa0859820:CDS
TCAGGTTCACCAGGTCGATC+CGG 0.491203 5_4:+58278918 None:intergenic
AATGTCATATTTATCTGGAC+AGG 0.494113 5_4:-58277164 Msa0859820:CDS
TGCAGAATTGCAGATCAAAA+GGG 0.495104 5_4:+58275685 None:intergenic
ATTAACCCTGCAATGCCTAC+TGG 0.496129 5_4:-58276625 Msa0859820:three_prime_UTR
AATGCTGGTTCTAATCCATC+TGG 0.496458 5_4:-58279635 Msa0859820:CDS
ATTACAGGTGAAATGTTAGC+AGG 0.497677 5_4:+58278834 None:intergenic
CCAAAGGAAGCTGCCTGTTG+TGG 0.502820 5_4:+58277283 None:intergenic
TTGTGACAATCATGAGCTTG+TGG 0.505135 5_4:-58275636 Msa0859820:three_prime_UTR
ATGGAGATGTCTCGGTTGGT+TGG 0.505736 5_4:+58275915 None:intergenic
GATCTGCAATTCTGCAGGGT+TGG 0.514799 5_4:-58275678 Msa0859820:three_prime_UTR
GTGCTATCCTTTCTTTAGGG+TGG 0.514914 5_4:+58276437 None:intergenic
AGGAGGCACATAAGATTGAA+TGG 0.519059 5_4:+58277141 None:intergenic
GAAGAACTTCCTGAGAGAGT+TGG 0.521193 5_4:-58278618 Msa0859820:CDS
AGGACTGGAATGTGTGGTTA+CGG 0.521390 5_4:-58278879 Msa0859820:CDS
CCTTCAATGTTATCACCAGA+TGG 0.522380 5_4:+58279620 None:intergenic
GGGTTGGATAGTTTGTTCAA+TGG 0.523230 5_4:-58275662 Msa0859820:three_prime_UTR
TGTGACAATCATGAGCTTGT+GGG 0.528817 5_4:-58275635 Msa0859820:three_prime_UTR
AGTAACAGTTGTGGAGGGAG+GGG 0.529224 5_4:+58277237 None:intergenic
TTTCCTAAACAAGAAAAGAC+TGG 0.529646 5_4:+58276799 None:intergenic
TTCGATGGAGATGTCTCGGT+TGG 0.530171 5_4:+58275911 None:intergenic
TTGTCAGTTGATTGTTTCGA+TGG 0.531763 5_4:+58275896 None:intergenic
ATGCTGGTGGGTTTCCTGCA+TGG 0.533086 5_4:-58277198 Msa0859820:CDS
TGTCTACGACTACATGAATC+CGG 0.541765 5_4:-58276584 Msa0859820:three_prime_UTR
TATACGCAGTCAGGTTCACC+AGG 0.548463 5_4:+58278909 None:intergenic
TGTAAATACTTTATGAGCAC+CGG 0.550440 5_4:-58276493 Msa0859820:three_prime_UTR
AGAGACACTTTCTGGTGGAC+AGG 0.555997 5_4:-58276557 Msa0859820:three_prime_UTR
AGTTCCACCACCCTAAAGAA+AGG 0.558473 5_4:-58276444 Msa0859820:three_prime_UTR
GAAGTAACAGTTGTGGAGGG+AGG 0.561560 5_4:+58277235 None:intergenic
AAGTAACAGTTGTGGAGGGA+GGG 0.565711 5_4:+58277236 None:intergenic
GCCAAACATCCTAAAAGGCT+AGG 0.566574 5_4:+58276772 None:intergenic
TTGTTTCGATGGAGATGTCT+CGG 0.567749 5_4:+58275907 None:intergenic
CAAATTTGATCATCCAGTTG+TGG 0.569323 5_4:-58276026 Msa0859820:three_prime_UTR
TCCGGATAAGGCATTGATTG+AGG 0.571672 5_4:+58278936 None:intergenic
TAGTTGCTCCAGCTCAGCGC+AGG 0.575573 5_4:+58277091 None:intergenic
CACACATATACTGATTAACC+TGG 0.579424 5_4:-58277002 Msa0859820:three_prime_UTR
CTCTCCTTACTAATCCAAGA+AGG 0.580301 5_4:-58275949 Msa0859820:three_prime_UTR
GCTGAGCTGGAGCAACTACA+TGG 0.582157 5_4:-58277086 Msa0859820:CDS
GGATGATCAAATTTGCATGT+TGG 0.583840 5_4:+58276034 None:intergenic
TCCTGTAAAGACTCGGTCGA+AGG 0.583942 5_4:+58275797 None:intergenic
CCAGAAAGTGTCTCTCCCGC+CGG 0.585264 5_4:+58276565 None:intergenic
ACATTATCAATTAATCCACT+TGG 0.589067 5_4:-58276412 Msa0859820:three_prime_UTR
GTGACAATCATGAGCTTGTG+GGG 0.594243 5_4:-58275634 Msa0859820:three_prime_UTR
ACCTGATGAAGTAACAGTTG+TGG 0.598830 5_4:+58277228 None:intergenic
GTCCCTATTACATGAGAACT+GGG 0.603851 5_4:-58277342 Msa0859820:CDS
TGGAGGAGCTTATCCAGTGG+CGG 0.605551 5_4:-58277263 Msa0859820:CDS
ATGCCTTATCCGGATCGACC+TGG 0.607838 5_4:-58278927 Msa0859820:CDS
TGATGAAGTAACAGTTGTGG+AGG 0.607944 5_4:+58277231 None:intergenic
TCGTAACTACATGCATTCAG+TGG 0.608471 5_4:-58276728 Msa0859820:three_prime_UTR
GAATACTGATAGAGTAGGCG+AGG 0.609226 5_4:+58275979 None:intergenic
ATTCTCGGCATTGACCATGC+AGG 0.609928 5_4:+58277184 None:intergenic
GCATCGAATACTGATAGAGT+AGG 0.610445 5_4:+58275974 None:intergenic
GTGGCTATCTCTCAGAACTA+CGG 0.612160 5_4:-58276007 Msa0859820:three_prime_UTR
TACGACTACATGAATCCGGC+GGG 0.613456 5_4:-58276580 Msa0859820:three_prime_UTR
CACTGGATAAGCTCCTCCAA+AGG 0.616300 5_4:+58277267 None:intergenic
TTAGATCCAATAAAACCAGT+AGG 0.616664 5_4:+58276610 None:intergenic
GCAGAATTGCAGATCAAAAG+GGG 0.625119 5_4:+58275686 None:intergenic
AGTTTATTCCTGTAAAGACT+CGG 0.629022 5_4:+58275790 None:intergenic
TTAGCTAAACGAATACATGA+AGG 0.634123 5_4:-58276954 Msa0859820:three_prime_UTR
GCGGGAGAGACACTTTCTGG+TGG 0.637718 5_4:-58276562 Msa0859820:three_prime_UTR
TAAAACCAGTAGGCATTGCA+GGG 0.641286 5_4:+58276620 None:intergenic
CTTTGGAGGAGCTTATCCAG+TGG 0.642465 5_4:-58277266 Msa0859820:CDS
TTACAGGTGAAATGTTAGCA+GGG 0.642989 5_4:+58278835 None:intergenic
AGTTGGGCAACCTGATTGTG+AGG 0.647405 5_4:-58278601 Msa0859820:intron
TATTTGAGGACTGGAATGTG+TGG 0.661824 5_4:-58278885 Msa0859820:CDS
CTACGACTACATGAATCCGG+CGG 0.676232 5_4:-58276581 Msa0859820:three_prime_UTR
AATACTGATAGAGTAGGCGA+GGG 0.679258 5_4:+58275980 None:intergenic
TGTTAGCAGGGTGATTATAG+CGG 0.683660 5_4:+58278847 None:intergenic
CAGAATTGCAGATCAAAAGG+GGG 0.684919 5_4:+58275687 None:intergenic
TTGACCCCAAGAGATAAAAG+GGG 0.687659 5_4:+58275550 None:intergenic
GATGAAGTAACAGTTGTGGA+GGG 0.690790 5_4:+58277232 None:intergenic
GGTCTCATAGGAAGACCAAG+TGG 0.702644 5_4:+58276397 None:intergenic
TGACAATCATGAGCTTGTGG+GGG 0.723888 5_4:-58275633 Msa0859820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATAATATTCCAAT+TGG + chr5_4:58275551-58275570 None:intergenic 10.0%
!!! ATAGTTTATAGATTATTTTT+TGG + chr5_4:58279247-58279266 None:intergenic 10.0%
!!! AAAAGTATCTTAAAATATTA+GGG + chr5_4:58279316-58279335 None:intergenic 10.0%
!!! TAAAAGTATCTTAAAATATT+AGG + chr5_4:58279317-58279336 None:intergenic 10.0%
!! AAAAAAGAAAGAAAAAAAAA+AGG + chr5_4:58279739-58279758 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCTTTTTT+CGG - chr5_4:58279739-58279758 Msa0859820:intron 10.0%
!! CAAAAAACATTAATAAAGTA+AGG + chr5_4:58275456-58275475 None:intergenic 15.0%
!!! GGTTTTATAATATGTAATTT+AGG - chr5_4:58276789-58276808 Msa0859820:three_prime_UTR 15.0%
!! ACAAAAATCTAATAAATGTT+TGG + chr5_4:58277397-58277416 None:intergenic 15.0%
!!! TTATTAGATTTTTGTTTTGA+TGG - chr5_4:58277402-58277421 Msa0859820:intron 15.0%
!! CTCTTAATTAAGTTAATTAT+AGG + chr5_4:58277653-58277672 None:intergenic 15.0%
!! TTAACTTAATTAAGAGTTTA+TGG - chr5_4:58277657-58277676 Msa0859820:intron 15.0%
!! TACTAATATTAAATTCTGTT+TGG + chr5_4:58277840-58277859 None:intergenic 15.0%
!!! TTTTTTTCACAATAAAAAGT+TGG + chr5_4:58279146-58279165 None:intergenic 15.0%
!!! TGAAGTTTTATTTTTCTTTT+TGG - chr5_4:58279712-58279731 Msa0859820:intron 15.0%
!! ATAATAATATTCCAATTGGA+TGG + chr5_4:58275547-58275566 None:intergenic 20.0%
!!! TTTTTACCTTTTTAACATCT+AGG - chr5_4:58275682-58275701 Msa0859820:three_prime_UTR 20.0%
!! ATTTCATCTTAAAAGCTTAA+AGG - chr5_4:58275731-58275750 Msa0859820:three_prime_UTR 20.0%
!! TTTCATCTTAAAAGCTTAAA+GGG - chr5_4:58275732-58275751 Msa0859820:three_prime_UTR 20.0%
!!! ATCTTGTTAAATTTTCTCAT+TGG - chr5_4:58276768-58276787 Msa0859820:three_prime_UTR 20.0%
!! GTAAAAAGTGAATTTATTCA+AGG + chr5_4:58277039-58277058 None:intergenic 20.0%
!!! ATGATATTTACTATTTTCCT+CGG - chr5_4:58277061-58277080 Msa0859820:exon 20.0%
!! AAATCTAATAAATGTTTGGA+AGG + chr5_4:58277393-58277412 None:intergenic 20.0%
!! ATCTAGTAAATAAATTCTAC+AGG + chr5_4:58277444-58277463 None:intergenic 20.0%
!!! TTATCTTTTTGTTATAGAAG+TGG + chr5_4:58277718-58277737 None:intergenic 20.0%
!!! CTATTTTATTTGTCGAAAAA+GGG - chr5_4:58278824-58278843 Msa0859820:intron 20.0%
!! GTTGTTGTTAATGTTATTGT+CGG - chr5_4:58275475-58275494 Msa0859820:three_prime_UTR 25.0%
!! TTGTTGTTAATGTTATTGTC+GGG - chr5_4:58275476-58275495 Msa0859820:three_prime_UTR 25.0%
!! TTGAAAACTTGTCTATTTTC+TGG + chr5_4:58275820-58275839 None:intergenic 25.0%
!!! TGATGATGTGTTTCTATTTT+TGG - chr5_4:58276027-58276046 Msa0859820:three_prime_UTR 25.0%
! TTTGCTTTATGATGCAATAA+AGG - chr5_4:58276284-58276303 Msa0859820:intron 25.0%
! TTGCTTTATGATGCAATAAA+GGG - chr5_4:58276285-58276304 Msa0859820:intron 25.0%
! TTGATCCAGTTTAATTGTAT+TGG - chr5_4:58276364-58276383 Msa0859820:intron 25.0%
! TTATTACTGCTTGAATTTGT+TGG - chr5_4:58276409-58276428 Msa0859820:three_prime_UTR 25.0%
! TCAGAAGAAAAATCATGAAA+AGG + chr5_4:58276687-58276706 None:intergenic 25.0%
! CTCATACTTTATTAGATTTC+AGG - chr5_4:58276821-58276840 Msa0859820:three_prime_UTR 25.0%
!!! TTGTGAGGTATGTTTATTTT+TGG - chr5_4:58276890-58276909 Msa0859820:three_prime_UTR 25.0%
! TTAAGAGTGAATTCAAGAAT+AGG - chr5_4:58277001-58277020 Msa0859820:three_prime_UTR 25.0%
!! ACTTAATTTTTGTCCTTTTG+TGG - chr5_4:58277108-58277127 Msa0859820:CDS 25.0%
! AATTAGCAAGTATTTCAAAC+AGG + chr5_4:58277173-58277192 None:intergenic 25.0%
! TAGAACACCAATAAATGAAA+AGG - chr5_4:58277279-58277298 Msa0859820:CDS 25.0%
! AGAACACCAATAAATGAAAA+GGG - chr5_4:58277280-58277299 Msa0859820:CDS 25.0%
!! TTTCTTCCCTTTTCATTTAT+TGG + chr5_4:58277289-58277308 None:intergenic 25.0%
! CTTCTTCTTAAATTATGTCA+TGG + chr5_4:58277507-58277526 None:intergenic 25.0%
! TGACATAATTTAAGAAGAAG+AGG - chr5_4:58277507-58277526 Msa0859820:intron 25.0%
! AATAAGATGAAAAGATCTTC+AGG - chr5_4:58277784-58277803 Msa0859820:intron 25.0%
! ATAAGATGAAAAGATCTTCA+GGG - chr5_4:58277785-58277804 Msa0859820:intron 25.0%
!!! AATCTACAATTGTTGCTTTT+AGG - chr5_4:58278099-58278118 Msa0859820:intron 25.0%
!!! GCTATTTTATTTGTCGAAAA+AGG - chr5_4:58278823-58278842 Msa0859820:intron 25.0%
! ACATTATCAATTAATCCACT+TGG - chr5_4:58279064-58279083 Msa0859820:intron 25.0%
!! CATTTTCTTCTTAATGCTTA+GGG - chr5_4:58279110-58279129 Msa0859820:intron 25.0%
! CAATAAAAAGTTGGAACAAA+TGG + chr5_4:58279137-58279156 None:intergenic 25.0%
! AGTATCTTAAAATATTAGGG+AGG + chr5_4:58279313-58279332 None:intergenic 25.0%
GTTGTTCAATGTGAAATCTA+TGG + chr5_4:58275585-58275604 None:intergenic 30.0%
AACTCACCTAGATGTTAAAA+AGG + chr5_4:58275691-58275710 None:intergenic 30.0%
! TGTTCTGATCATCATTGTTT+TGG - chr5_4:58275956-58275975 Msa0859820:three_prime_UTR 30.0%
!! TTAACTTGTGTGAGTGAAAA+AGG - chr5_4:58276157-58276176 Msa0859820:intron 30.0%
TGATTCTATGCAAGTAAACA+TGG + chr5_4:58276218-58276237 None:intergenic 30.0%
TTATTATACTTGATCGCACA+TGG - chr5_4:58276242-58276261 Msa0859820:intron 30.0%
ACAGTCCAATACAATTAAAC+TGG + chr5_4:58276372-58276391 None:intergenic 30.0%
GAAAAGGAAACAAAAGAAAG+AGG + chr5_4:58276671-58276690 None:intergenic 30.0%
! TTTTATGAACATGTAGTCTG+TGG - chr5_4:58276738-58276757 Msa0859820:three_prime_UTR 30.0%
!! AGATTTCAGGTTACTCAATA+TGG - chr5_4:58276834-58276853 Msa0859820:three_prime_UTR 30.0%
AATAAACATACCTCACAATC+AGG + chr5_4:58276888-58276907 None:intergenic 30.0%
GGACAAAAATTAAGTGCAAA+AGG + chr5_4:58277103-58277122 None:intergenic 30.0%
AGATCTCTCTATGACAATAA+TGG - chr5_4:58277460-58277479 Msa0859820:intron 30.0%
GAGGAAATAATATCAAGTTC+AGG - chr5_4:58277526-58277545 Msa0859820:intron 30.0%
! ACTGTTTTCATAAGTTATCC+TGG - chr5_4:58277749-58277768 Msa0859820:intron 30.0%
! TTTGGAATAGCTTATGGAAA+CGG + chr5_4:58277822-58277841 None:intergenic 30.0%
! ATTCTGTTTGGAATAGCTTA+TGG + chr5_4:58277828-58277847 None:intergenic 30.0%
! TTGCAGTATTTTCTTAAGAC+AGG - chr5_4:58277886-58277905 Msa0859820:intron 30.0%
!! ACCTAAAGTATTGAAGACAA+CGG + chr5_4:58277974-58277993 None:intergenic 30.0%
! AATAAAGCACTTGGTTCAAA+GGG + chr5_4:58278022-58278041 None:intergenic 30.0%
! AAATAAAGCACTTGGTTCAA+AGG + chr5_4:58278023-58278042 None:intergenic 30.0%
! TGTGGAAAAAATAAAGCACT+TGG + chr5_4:58278031-58278050 None:intergenic 30.0%
CATTAGAAGAGTAAACTTTG+TGG + chr5_4:58278049-58278068 None:intergenic 30.0%
CACAAAGTTTACTCTTCTAA+TGG - chr5_4:58278047-58278066 Msa0859820:intron 30.0%
CCAGATAAATATGACATTCT+CGG + chr5_4:58278310-58278329 None:intergenic 30.0%
AATGTCATATTTATCTGGAC+AGG - chr5_4:58278312-58278331 Msa0859820:intron 30.0%
! ATATACTGATTAACCTGGTA+TGG - chr5_4:58278479-58278498 Msa0859820:intron 30.0%
TTAGCTAAACGAATACATGA+AGG - chr5_4:58278522-58278541 Msa0859820:intron 30.0%
!! CATTGATTTCCAATCACATT+CGG - chr5_4:58278622-58278641 Msa0859820:CDS 30.0%
!! GTTCTGTTTTGGATGTTAAT+CGG + chr5_4:58278658-58278677 None:intergenic 30.0%
TTTCCTAAACAAGAAAAGAC+TGG + chr5_4:58278680-58278699 None:intergenic 30.0%
TTAGATCCAATAAAACCAGT+AGG + chr5_4:58278869-58278888 None:intergenic 30.0%
! CTCATAAAGTATTTACAGTC+TGG + chr5_4:58278980-58278999 None:intergenic 30.0%
TGTAAATACTTTATGAGCAC+CGG - chr5_4:58278983-58279002 Msa0859820:CDS 30.0%
TTTGTGCTATCCTTTCTTTA+GGG + chr5_4:58279045-58279064 None:intergenic 30.0%
TAAGAAGAAAATGCACTTAC+AGG + chr5_4:58279103-58279122 None:intergenic 30.0%
! GCATTTTCTTCTTAATGCTT+AGG - chr5_4:58279109-58279128 Msa0859820:intron 30.0%
! TGATTTTCTGATTCCTATGT+TGG - chr5_4:58279358-58279377 Msa0859820:intron 30.0%
TGCTCTTATTACAGAATCTA+TGG - chr5_4:58279403-58279422 Msa0859820:intron 30.0%
! AGCTTGTTTAGATGAATCTT+CGG + chr5_4:58279635-58279654 None:intergenic 30.0%
AGTTTATTCCTGTAAAGACT+CGG + chr5_4:58279689-58279708 None:intergenic 30.0%
GAATTTCACTCAGTATTTGT+AGG + chr5_4:58279965-58279984 None:intergenic 30.0%
TGCATGAATAGAGTTTCTAT+TGG - chr5_4:58280004-58280023 Msa0859820:intron 30.0%
! CTGCAAACTTTGCAACATTT+TGG + chr5_4:58275518-58275537 None:intergenic 35.0%
! TGCAGAATTTTCCATCCAAT+TGG - chr5_4:58275533-58275552 Msa0859820:three_prime_UTR 35.0%
TAAAAGCTTAAAGGGTCATC+AGG - chr5_4:58275740-58275759 Msa0859820:three_prime_UTR 35.0%
AAAAGCTTAAAGGGTCATCA+GGG - chr5_4:58275741-58275760 Msa0859820:three_prime_UTR 35.0%
!! AGACAAGTTTTCAAGAATGC+TGG - chr5_4:58275826-58275845 Msa0859820:three_prime_UTR 35.0%
!!! CTGATCATCATTGTTTTGGT+TGG - chr5_4:58275960-58275979 Msa0859820:three_prime_UTR 35.0%
CAATGTTGTTGTATTGTGTG+AGG - chr5_4:58276107-58276126 Msa0859820:intron 35.0%
TTCTGCAATACGAATCACAA+AGG + chr5_4:58276472-58276491 None:intergenic 35.0%
TTCGTATTGCAGAAGCTATT+CGG - chr5_4:58276478-58276497 Msa0859820:three_prime_UTR 35.0%
CTCAAATAATATACGCAGTC+AGG + chr5_4:58276579-58276598 None:intergenic 35.0%
CTGACTGCGTATATTATTTG+AGG - chr5_4:58276577-58276596 Msa0859820:three_prime_UTR 35.0%
TGCGTATATTATTTGAGGAC+TGG - chr5_4:58276582-58276601 Msa0859820:three_prime_UTR 35.0%
TTACAGGTGAAATGTTAGCA+GGG + chr5_4:58276644-58276663 None:intergenic 35.0%
ATTACAGGTGAAATGTTAGC+AGG + chr5_4:58276645-58276664 None:intergenic 35.0%
TGCTAACATTTCACCTGTAA+TGG - chr5_4:58276644-58276663 Msa0859820:three_prime_UTR 35.0%
AAAAGAAAGAGGTCCATTAC+AGG + chr5_4:58276660-58276679 None:intergenic 35.0%
!! TTTCTTTCCCTCGTTTTGAA+CGG - chr5_4:58276934-58276953 Msa0859820:three_prime_UTR 35.0%
TGGAAATAAGAGACCACAAA+AGG + chr5_4:58277124-58277143 None:intergenic 35.0%
CTATTATTGAAGGGGTTGAA+TGG + chr5_4:58277144-58277163 None:intergenic 35.0%
CATTCAACCCCTTCAATAAT+AGG - chr5_4:58277142-58277161 Msa0859820:CDS 35.0%
AGGCGAAACCTATTATTGAA+GGG + chr5_4:58277153-58277172 None:intergenic 35.0%
!! GCTCTGAAATATTTAGCCTA+GGG - chr5_4:58277243-58277262 Msa0859820:CDS 35.0%
AAAAGGGAAGAAACTGATGT+AGG - chr5_4:58277296-58277315 Msa0859820:CDS 35.0%
AATAAGTTATCCTGCCAATG+TGG - chr5_4:58277350-58277369 Msa0859820:CDS 35.0%
! CAAAAGACGATTTTCCACAT+TGG + chr5_4:58277367-58277386 None:intergenic 35.0%
AAGACAGGAACATGTAAGTA+TGG - chr5_4:58277901-58277920 Msa0859820:intron 35.0%
AATATCATCATCCCAAAGAC+AGG - chr5_4:58277935-58277954 Msa0859820:intron 35.0%
!! CCTAAAGTATTGAAGACAAC+GGG + chr5_4:58277973-58277992 None:intergenic 35.0%
CCGAGAATGTCATATTTATC+TGG - chr5_4:58278307-58278326 Msa0859820:intron 35.0%
! CACACATATACTGATTAACC+TGG - chr5_4:58278474-58278493 Msa0859820:intron 35.0%
! GACAGTTTTTAAACCATACC+AGG + chr5_4:58278495-58278514 None:intergenic 35.0%
GCGACATCTAGTAGTAAAAA+TGG + chr5_4:58278571-58278590 None:intergenic 35.0%
!!! AGAAAAGACTGGTTCTGTTT+TGG + chr5_4:58278669-58278688 None:intergenic 35.0%
!! GAACCAGTCTTTTCTTGTTT+AGG - chr5_4:58278674-58278693 Msa0859820:intron 35.0%
!! GGAAATATTCCTAGCCTTTT+AGG - chr5_4:58278695-58278714 Msa0859820:intron 35.0%
ACATAGCCAAACATCCTAAA+AGG + chr5_4:58278712-58278731 None:intergenic 35.0%
AGATCCATATTTGCATGTTC+CGG + chr5_4:58279005-58279024 None:intergenic 35.0%
GTTTGTGCTATCCTTTCTTT+AGG + chr5_4:58279046-58279065 None:intergenic 35.0%
ATCTATGGAGTATGCAAGTT+TGG - chr5_4:58279418-58279437 Msa0859820:intron 35.0%
GGATGATCAAATTTGCATGT+TGG + chr5_4:58279445-58279464 None:intergenic 35.0%
CAAATTTGATCATCCAGTTG+TGG - chr5_4:58279450-58279469 Msa0859820:intron 35.0%
!! AAAGCCTTCTTGGATTAGTA+AGG + chr5_4:58279534-58279553 None:intergenic 35.0%
TTGTCAGTTGATTGTTTCGA+TGG + chr5_4:58279583-58279602 None:intergenic 35.0%
TGCAGAATTGCAGATCAAAA+GGG + chr5_4:58279794-58279813 None:intergenic 35.0%
! TTTTGATCTGCAATTCTGCA+GGG - chr5_4:58279794-58279813 Msa0859820:intron 35.0%
!!! GATAGAGGGCATTTTTTTTG+TGG - chr5_4:58279865-58279884 Msa0859820:intron 35.0%
! TCTTTTCCCCTTTTATCTCT+TGG - chr5_4:58279920-58279939 Msa0859820:intron 35.0%
! CTTTTCCCCTTTTATCTCTT+GGG - chr5_4:58279921-58279940 Msa0859820:intron 35.0%
! TTTTCCCCTTTTATCTCTTG+GGG - chr5_4:58279922-58279941 Msa0859820:intron 35.0%
ATTGACCCCAAGAGATAAAA+GGG + chr5_4:58279930-58279949 None:intergenic 35.0%
AATTGACCCCAAGAGATAAA+AGG + chr5_4:58279931-58279950 None:intergenic 35.0%
TTTATCTCTTGGGGTCAATT+TGG - chr5_4:58279931-58279950 Msa0859820:intron 35.0%
!! AATGCTGGTTCTAATCCATC+TGG - chr5_4:58275841-58275860 Msa0859820:three_prime_UTR 40.0%
CCTTCAATGTTATCACCAGA+TGG + chr5_4:58275859-58275878 None:intergenic 40.0%
CCATCTGGTGATAACATTGA+AGG - chr5_4:58275856-58275875 Msa0859820:three_prime_UTR 40.0%
ATTGTATTGGACTGTGAGTG+TGG - chr5_4:58276377-58276396 Msa0859820:intron 40.0%
TATTTGAGGACTGGAATGTG+TGG - chr5_4:58276591-58276610 Msa0859820:three_prime_UTR 40.0%
TGTTAGCAGGGTGATTATAG+CGG + chr5_4:58276632-58276651 None:intergenic 40.0%
AAGAACTTCCTGAGAGAGTT+GGG - chr5_4:58276859-58276878 Msa0859820:three_prime_UTR 40.0%
GTGCTTCATGAAATCGAATG+TGG - chr5_4:58276956-58276975 Msa0859820:three_prime_UTR 40.0%
CATGAAATCGAATGTGGATG+TGG - chr5_4:58276962-58276981 Msa0859820:three_prime_UTR 40.0%
GGCGAAACCTATTATTGAAG+GGG + chr5_4:58277152-58277171 None:intergenic 40.0%
CAGGCGAAACCTATTATTGA+AGG + chr5_4:58277154-58277173 None:intergenic 40.0%
CATGAGCACAAAATGTCTGT+AGG - chr5_4:58277197-58277216 Msa0859820:CDS 40.0%
ACCAAGACTATGCTCATACA+AGG - chr5_4:58277221-58277240 Msa0859820:CDS 40.0%
!! GGCTCTGAAATATTTAGCCT+AGG - chr5_4:58277242-58277261 Msa0859820:CDS 40.0%
CTAACAATGAACATGTCCCT+AGG + chr5_4:58277262-58277281 None:intergenic 40.0%
AAGAAACTGATGTAGGTCGT+AGG - chr5_4:58277303-58277322 Msa0859820:CDS 40.0%
TCCAGTGCAATGAAACTTGT+TGG - chr5_4:58277617-58277636 Msa0859820:intron 40.0%
ACCAACAAGTTTCATTGCAC+TGG + chr5_4:58277621-58277640 None:intergenic 40.0%
!! AGTGCAATGAAACTTGTTGG+TGG - chr5_4:58277620-58277639 Msa0859820:intron 40.0%
AAGTTATCCTGGAGAGCTTA+TGG - chr5_4:58277760-58277779 Msa0859820:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr5_4:58277770-58277789 None:intergenic 40.0%
TAGCTTATGGAAACGGCTTA+TGG + chr5_4:58277815-58277834 None:intergenic 40.0%
CCCGTTGTCTTCAATACTTT+AGG - chr5_4:58277970-58277989 Msa0859820:intron 40.0%
TGTCCCTATTACATGAGAAC+TGG - chr5_4:58278133-58278152 Msa0859820:intron 40.0%
GTCCCTATTACATGAGAACT+GGG - chr5_4:58278134-58278153 Msa0859820:intron 40.0%
GACCCAGTTCTCATGTAATA+GGG + chr5_4:58278139-58278158 None:intergenic 40.0%
AGACCCAGTTCTCATGTAAT+AGG + chr5_4:58278140-58278159 None:intergenic 40.0%
CAAGTTTCATCATCCACAAC+AGG - chr5_4:58278180-58278199 Msa0859820:intron 40.0%
GATGAAGTAACAGTTGTGGA+GGG + chr5_4:58278247-58278266 None:intergenic 40.0%
TGATGAAGTAACAGTTGTGG+AGG + chr5_4:58278248-58278267 None:intergenic 40.0%
! TCCACAACTGTTACTTCATC+AGG - chr5_4:58278247-58278266 Msa0859820:intron 40.0%
ACCTGATGAAGTAACAGTTG+TGG + chr5_4:58278251-58278270 None:intergenic 40.0%
! TCATCAGGTTTTCCATATGC+TGG - chr5_4:58278262-58278281 Msa0859820:intron 40.0%
! AGGAGGCACATAAGATTGAA+TGG + chr5_4:58278338-58278357 None:intergenic 40.0%
TGTGAAGAAGGCAAAAAAGG+AGG + chr5_4:58278355-58278374 None:intergenic 40.0%
CCTTGTGAAGAAGGCAAAAA+AGG + chr5_4:58278358-58278377 None:intergenic 40.0%
!!! CCTTTTTTGCCTTCTTCACA+AGG - chr5_4:58278355-58278374 Msa0859820:intron 40.0%
!!! TCCTAGCCTTTTAGGATGTT+TGG - chr5_4:58278703-58278722 Msa0859820:intron 40.0%
TCGTAACTACATGCATTCAG+TGG - chr5_4:58278748-58278767 Msa0859820:intron 40.0%
TACATGCATTCAGTGGTTAC+TGG - chr5_4:58278755-58278774 Msa0859820:intron 40.0%
! TAAAACCAGTAGGCATTGCA+GGG + chr5_4:58278859-58278878 None:intergenic 40.0%
! ATAAAACCAGTAGGCATTGC+AGG + chr5_4:58278860-58278879 None:intergenic 40.0%
!!! GCAATGCCTACTGGTTTTAT+TGG - chr5_4:58278860-58278879 Msa0859820:CDS 40.0%
TGTCTACGACTACATGAATC+CGG - chr5_4:58278892-58278911 Msa0859820:CDS 40.0%
TATTTACAGTCTGGTTGCTC+AGG + chr5_4:58278971-58278990 None:intergenic 40.0%
AATGCACTTACAGGTCTCAT+AGG + chr5_4:58279094-58279113 None:intergenic 40.0%
AATACTGATAGAGTAGGCGA+GGG + chr5_4:58279499-58279518 None:intergenic 40.0%
GCATCGAATACTGATAGAGT+AGG + chr5_4:58279505-58279524 None:intergenic 40.0%
CTCTCCTTACTAATCCAAGA+AGG - chr5_4:58279527-58279546 Msa0859820:intron 40.0%
TTGTTTCGATGGAGATGTCT+CGG + chr5_4:58279572-58279591 None:intergenic 40.0%
AGATCAAAAGGGGGAATAGA+TGG + chr5_4:58279783-58279802 None:intergenic 40.0%
CAGAATTGCAGATCAAAAGG+GGG + chr5_4:58279792-58279811 None:intergenic 40.0%
GCAGAATTGCAGATCAAAAG+GGG + chr5_4:58279793-58279812 None:intergenic 40.0%
CTGCAGAATTGCAGATCAAA+AGG + chr5_4:58279795-58279814 None:intergenic 40.0%
! CTTTTGATCTGCAATTCTGC+AGG - chr5_4:58279793-58279812 Msa0859820:intron 40.0%
!! GGGTTGGATAGTTTGTTCAA+TGG - chr5_4:58279814-58279833 Msa0859820:intron 40.0%
TTGTGACAATCATGAGCTTG+TGG - chr5_4:58279840-58279859 Msa0859820:intron 40.0%
TGTGACAATCATGAGCTTGT+GGG - chr5_4:58279841-58279860 Msa0859820:intron 40.0%
TTGACCCCAAGAGATAAAAG+GGG + chr5_4:58279929-58279948 None:intergenic 40.0%
GCCTCAATCAATGCCTTATC+CGG - chr5_4:58276539-58276558 Msa0859820:three_prime_UTR 45.0%
!! TCCGGATAAGGCATTGATTG+AGG + chr5_4:58276543-58276562 None:intergenic 45.0%
AGGACTGGAATGTGTGGTTA+CGG - chr5_4:58276597-58276616 Msa0859820:three_prime_UTR 45.0%
GAAGAACTTCCTGAGAGAGT+TGG - chr5_4:58276858-58276877 Msa0859820:three_prime_UTR 45.0%
!! TGAAGCACCGTTCAAAACGA+GGG + chr5_4:58276944-58276963 None:intergenic 45.0%
!! ATGAAGCACCGTTCAAAACG+AGG + chr5_4:58276945-58276964 None:intergenic 45.0%
GAAACTAAGACTTCTGTCCG+AGG + chr5_4:58277081-58277100 None:intergenic 45.0%
GCCTTGTATGAGCATAGTCT+TGG + chr5_4:58277225-58277244 None:intergenic 45.0%
CTGATGTAGGTCGTAGGATA+CGG - chr5_4:58277309-58277328 Msa0859820:CDS 45.0%
! AGACGATTTTCCACATTGGC+AGG + chr5_4:58277363-58277382 None:intergenic 45.0%
GATGTACAAACCTGACGCAT+GGG + chr5_4:58278000-58278019 None:intergenic 45.0%
AGAACTGGGTCTTGCAAGTT+TGG - chr5_4:58278148-58278167 Msa0859820:intron 45.0%
AAGTAACAGTTGTGGAGGGA+GGG + chr5_4:58278243-58278262 None:intergenic 45.0%
! TCAGGTTTTCCATATGCTGG+TGG - chr5_4:58278265-58278284 Msa0859820:intron 45.0%
! CAGGTTTTCCATATGCTGGT+GGG - chr5_4:58278266-58278285 Msa0859820:intron 45.0%
GGCATAATGCCTTGTGAAGA+AGG + chr5_4:58278367-58278386 None:intergenic 45.0%
!! ATTTGAGCGCCGAATGTGAT+TGG + chr5_4:58278634-58278653 None:intergenic 45.0%
GCCAAACATCCTAAAAGGCT+AGG + chr5_4:58278707-58278726 None:intergenic 45.0%
ATTAACCCTGCAATGCCTAC+TGG - chr5_4:58278851-58278870 Msa0859820:CDS 45.0%
! AGCACCGGAACATGCAAATA+TGG - chr5_4:58278998-58279017 Msa0859820:intron 45.0%
AGTTCCACCACCCTAAAGAA+AGG - chr5_4:58279032-58279051 Msa0859820:intron 45.0%
!! CTATCCTTTCTTTAGGGTGG+TGG + chr5_4:58279039-58279058 None:intergenic 45.0%
! GTGCTATCCTTTCTTTAGGG+TGG + chr5_4:58279042-58279061 None:intergenic 45.0%
! TTCCTATGTTGGTTGTCTGC+AGG - chr5_4:58279369-58279388 Msa0859820:intron 45.0%
! TCCTATGTTGGTTGTCTGCA+GGG - chr5_4:58279370-58279389 Msa0859820:intron 45.0%
! TTCTGAGAGATAGCCACAAC+TGG + chr5_4:58279466-58279485 None:intergenic 45.0%
GTGGCTATCTCTCAGAACTA+CGG - chr5_4:58279469-58279488 Msa0859820:intron 45.0%
GAATACTGATAGAGTAGGCG+AGG + chr5_4:58279500-58279519 None:intergenic 45.0%
TGGACAGTTGAAAGCCTTCT+TGG + chr5_4:58279544-58279563 None:intergenic 45.0%
GTGACAATCATGAGCTTGTG+GGG - chr5_4:58279842-58279861 Msa0859820:intron 45.0%
TGACAATCATGAGCTTGTGG+GGG - chr5_4:58279843-58279862 Msa0859820:intron 45.0%
!!! ATTTATATTTTAATTTTCAT+TGG - chr5_4:58275652-58275671 Msa0859820:three_prime_UTR 5.0%
TATACGCAGTCAGGTTCACC+AGG + chr5_4:58276570-58276589 None:intergenic 50.0%
GGACTGGAATGTGTGGTTAC+GGG - chr5_4:58276598-58276617 Msa0859820:three_prime_UTR 50.0%
AGTTGGGCAACCTGATTGTG+AGG - chr5_4:58276875-58276894 Msa0859820:three_prime_UTR 50.0%
AGGTCGTAGGATACGGAATG+AGG - chr5_4:58277316-58277335 Msa0859820:CDS 50.0%
CATCATCCCAAAGACAGGAG+AGG - chr5_4:58277940-58277959 Msa0859820:intron 50.0%
TTTAGGTCTTCCCATGCGTC+AGG - chr5_4:58277987-58278006 Msa0859820:intron 50.0%
GGATGTACAAACCTGACGCA+TGG + chr5_4:58278001-58278020 None:intergenic 50.0%
CACTGGATAAGCTCCTCCAA+AGG + chr5_4:58278212-58278231 None:intergenic 50.0%
! CTTTGGAGGAGCTTATCCAG+TGG - chr5_4:58278210-58278229 Msa0859820:intron 50.0%
AGTAACAGTTGTGGAGGGAG+GGG + chr5_4:58278242-58278261 None:intergenic 50.0%
GAAGTAACAGTTGTGGAGGG+AGG + chr5_4:58278244-58278263 None:intergenic 50.0%
!! ATTCTCGGCATTGACCATGC+AGG + chr5_4:58278295-58278314 None:intergenic 50.0%
CTACGACTACATGAATCCGG+CGG - chr5_4:58278895-58278914 Msa0859820:CDS 50.0%
TACGACTACATGAATCCGGC+GGG - chr5_4:58278896-58278915 Msa0859820:CDS 50.0%
! AGAGACACTTTCTGGTGGAC+AGG - chr5_4:58278919-58278938 Msa0859820:CDS 50.0%
TCTGGTTGCTCAGGTCTATC+TGG + chr5_4:58278962-58278981 None:intergenic 50.0%
GGTCTCATAGGAAGACCAAG+TGG + chr5_4:58279082-58279101 None:intergenic 50.0%
TCCCTGCAGACAACCAACAT+AGG + chr5_4:58279374-58279393 None:intergenic 50.0%
ATGGAGATGTCTCGGTTGGT+TGG + chr5_4:58279564-58279583 None:intergenic 50.0%
TTCGATGGAGATGTCTCGGT+TGG + chr5_4:58279568-58279587 None:intergenic 50.0%
ACCTTCGACCGAGTCTTTAC+AGG - chr5_4:58279678-58279697 Msa0859820:intron 50.0%
! TCCTGTAAAGACTCGGTCGA+AGG + chr5_4:58279682-58279701 None:intergenic 50.0%
GATCTGCAATTCTGCAGGGT+TGG - chr5_4:58279798-58279817 Msa0859820:intron 50.0%
ATGAGCTTGTGGGGGATAGA+GGG - chr5_4:58279851-58279870 Msa0859820:intron 50.0%
ATGCCTTATCCGGATCGACC+TGG - chr5_4:58276549-58276568 Msa0859820:three_prime_UTR 55.0%
TCACCAGGTCGATCCGGATA+AGG + chr5_4:58276555-58276574 None:intergenic 55.0%
TCAGGTTCACCAGGTCGATC+CGG + chr5_4:58276561-58276580 None:intergenic 55.0%
! TCAGGTTGCCCAACTCTCTC+AGG + chr5_4:58276870-58276889 None:intergenic 55.0%
GCAGCACCTCTCCTGTCTTT+GGG + chr5_4:58277949-58277968 None:intergenic 55.0%
TGCAGCACCTCTCCTGTCTT+TGG + chr5_4:58277950-58277969 None:intergenic 55.0%
CCAAAGGAAGCTGCCTGTTG+TGG + chr5_4:58278196-58278215 None:intergenic 55.0%
CCACAACAGGCAGCTTCCTT+TGG - chr5_4:58278193-58278212 Msa0859820:intron 55.0%
CAACAGGCAGCTTCCTTTGG+AGG - chr5_4:58278196-58278215 Msa0859820:intron 55.0%
TGGAGGAGCTTATCCAGTGG+CGG - chr5_4:58278213-58278232 Msa0859820:intron 55.0%
GCAGGAAACCCACCAGCATA+TGG + chr5_4:58278277-58278296 None:intergenic 55.0%
!! ATGCTGGTGGGTTTCCTGCA+TGG - chr5_4:58278278-58278297 Msa0859820:intron 55.0%
GCTGAGCTGGAGCAACTACA+TGG - chr5_4:58278390-58278409 Msa0859820:intron 55.0%
CATGAGCTTGTGGGGGATAG+AGG - chr5_4:58279850-58279869 Msa0859820:intron 55.0%
GCATTATGCCTGCGCTGAGC+TGG - chr5_4:58278377-58278396 Msa0859820:intron 60.0%
TAGTTGCTCCAGCTCAGCGC+AGG + chr5_4:58278388-58278407 None:intergenic 60.0%
!! CCAGAAAGTGTCTCTCCCGC+CGG + chr5_4:58278914-58278933 None:intergenic 60.0%
GCGGGAGAGACACTTTCTGG+TGG - chr5_4:58278914-58278933 Msa0859820:CDS 60.0%
CCGGCGGGAGAGACACTTTC+TGG - chr5_4:58278911-58278930 Msa0859820:CDS 65.0%
! GAGGGAGGGGACGCCGCCAC+TGG + chr5_4:58278229-58278248 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 58275430 58280068 58275430 ID=Msa0859820;Name=Msa0859820
chr5_4 mRNA 58275430 58280068 58275430 ID=Msa0859820-mRNA-1;Parent=Msa0859820;Name=Msa0859820-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.33|0.71|0.71|1|0.85|7|1360|199
chr5_4 exon 58275430 58276107 58275430 ID=Msa0859820-mRNA-1:exon:17760;Parent=Msa0859820-mRNA-1
chr5_4 exon 58276396 58277377 58276396 ID=Msa0859820-mRNA-1:exon:17759;Parent=Msa0859820-mRNA-1
chr5_4 exon 58278602 58278655 58278602 ID=Msa0859820-mRNA-1:exon:17758;Parent=Msa0859820-mRNA-1
chr5_4 exon 58278682 58278687 58278682 ID=Msa0859820-mRNA-1:exon:17757;Parent=Msa0859820-mRNA-1
chr5_4 exon 58278839 58279008 58278839 ID=Msa0859820-mRNA-1:exon:17756;Parent=Msa0859820-mRNA-1
chr5_4 exon 58279621 58279684 58279621 ID=Msa0859820-mRNA-1:exon:17755;Parent=Msa0859820-mRNA-1
chr5_4 exon 58280063 58280068 58280063 ID=Msa0859820-mRNA-1:exon:17754;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58280063 58280068 58280063 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58279621 58279684 58279621 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58278839 58279008 58278839 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58278682 58278687 58278682 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58278602 58278655 58278602 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 CDS 58277078 58277377 58277078 ID=Msa0859820-mRNA-1:cds;Parent=Msa0859820-mRNA-1
chr5_4 three_prime_UTR 58276396 58277077 58276396 ID=Msa0859820-mRNA-1:three_prime_utr;Parent=Msa0859820-mRNA-1
chr5_4 three_prime_UTR 58275430 58276107 58275430 ID=Msa0859820-mRNA-1:three_prime_utr;Parent=Msa0859820-mRNA-1
Gene Sequence

>Msa0859820

ATGTTCATGCCAGAAAATAGACAAGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCTATTCGGCGTTTGAAAATCAATAGTACTCGAGACAGAGATGCTGTGCCTCAATCAATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCGTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGCCGCTATAATCACCCTGCTAACATTTCACCTGTAAAAGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTTGGGCAACCTGATTGTGAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGCAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAACAGGCAGCTTCCTTTGGAGGAGCTTATCCAGTGGCGGCGTCCCCTCCCTCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTGCCTCCTTTTTTGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGTTAGTTAA
Protein sequence

>Msa0859820

MFMPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANISPVKVTQYGEELPERVGQPDCEEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTTVTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMVS*