AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819610 MtrunA17_Chr5g0438891 74.813 401 8 3 22 329 14 414 0.0 550
Msa0819610 MtrunA17_Chr7g0249221 31.724 290 111 9 40 250 23 304 6.77e-32 123
Msa0819610 MtrunA17_Chr7g0249221 37.864 103 40 4 44 137 275 362 8.96e-13 68.6
Msa0819610 MtrunA17_Chr1g0195891 32.414 290 136 11 26 272 69 341 1.03e-27 110
Msa0819610 MtrunA17_Chr4g0066941 60.000 85 25 2 44 125 43 121 2.21e-26 108
Msa0819610 MtrunA17_Chr4g0066941 41.667 84 31 3 45 121 333 405 2.19e-12 67.8
Msa0819610 MtrunA17_Chr2g0286151 56.322 87 28 2 44 126 44 124 9.70e-25 104
Msa0819610 MtrunA17_Chr8g0356241 30.502 259 129 9 34 251 177 425 5.11e-23 99.4
Msa0819610 MtrunA17_Chr8g0356241 30.830 253 118 9 45 250 232 474 1.98e-21 94.7
Msa0819610 MtrunA17_Chr8g0356241 40.964 83 41 2 44 121 395 474 6.73e-15 75.5
Msa0819610 MtrunA17_Chr4g0058011 31.801 261 139 13 24 266 261 500 1.04e-22 98.6
Msa0819610 MtrunA17_Chr4g0058011 42.353 85 39 3 44 124 458 536 2.68e-15 76.6
Msa0819610 MtrunA17_Chr3g0116431 29.474 285 126 9 44 266 171 442 4.49e-21 93.6
Msa0819610 MtrunA17_Chr3g0116431 37.374 99 52 2 27 121 383 475 6.79e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819610 AT1G04990.5 33.418 392 165 11 1 310 5 382 3.15e-55 184
Msa0819610 AT1G04990.1 37.217 309 135 7 1 265 5 298 8.58e-54 181
Msa0819610 AT1G04990.6 37.217 309 135 7 1 265 5 298 8.58e-54 181
Msa0819610 AT1G04990.2 37.217 309 135 7 1 265 5 298 8.58e-54 181
Msa0819610 AT2G32930.1 38.111 307 125 10 1 256 1 293 5.76e-52 178
Msa0819610 AT2G32930.2 37.621 311 125 10 1 256 1 297 4.32e-51 176
Msa0819610 AT2G32930.3 36.972 284 111 9 27 256 1 270 1.25e-44 158
Msa0819610 AT3G02830.1 30.743 296 126 11 21 250 18 300 9.54e-34 128
Msa0819610 AT3G02830.1 36.082 97 48 3 37 127 264 352 4.35e-14 72.8
Msa0819610 AT3G02830.2 31.673 281 117 10 36 250 9 280 1.43e-33 127
Msa0819610 AT3G02830.2 36.082 97 48 3 37 127 244 332 5.13e-14 72.8
Msa0819610 AT1G04990.4 31.561 301 145 10 55 310 17 301 1.65e-32 123
Msa0819610 AT2G47850.2 31.786 280 126 10 19 250 27 289 5.18e-32 124
Msa0819610 AT2G47850.2 42.308 78 43 1 44 121 260 335 2.06e-14 73.9
Msa0819610 AT1G04990.3 36.239 218 115 6 55 265 17 217 3.14e-31 120
Msa0819610 AT2G47850.1 30.233 301 129 9 19 250 27 315 1.70e-30 120
Msa0819610 AT2G47850.1 42.308 78 43 1 44 121 286 361 3.22e-14 73.6
Msa0819610 AT2G47850.3 30.233 301 129 9 19 250 27 315 1.70e-30 120
Msa0819610 AT2G47850.3 42.308 78 43 1 44 121 286 361 3.22e-14 73.6
Msa0819610 AT5G16540.2 34.298 242 113 9 44 250 39 269 2.63e-30 118
Msa0819610 AT5G16540.2 35.106 94 46 2 37 127 233 314 5.23e-14 72.4
Msa0819610 AT5G16540.1 34.298 242 113 9 44 250 39 269 2.76e-30 118
Msa0819610 AT5G16540.1 37.363 91 55 1 37 127 233 321 3.25e-14 73.2
Msa0819610 AT5G16540.4 33.471 242 115 8 44 250 18 248 3.64e-30 115
Msa0819610 AT5G16540.3 34.298 242 113 9 44 250 18 248 3.85e-30 117
Msa0819610 AT5G16540.3 37.363 91 55 1 37 127 212 300 3.87e-14 72.8
Msa0819610 AT3G06410.1 28.963 328 133 11 20 260 29 343 2.39e-28 114
Msa0819610 AT3G06410.1 42.857 77 42 2 44 120 304 378 1.92e-12 68.2
Msa0819610 AT3G12680.1 35.270 241 116 10 44 255 222 451 3.98e-28 114
Msa0819610 AT3G12680.1 44.186 86 43 2 41 121 414 499 1.24e-17 84.0
Msa0819610 AT5G18550.2 54.167 96 32 3 44 134 48 136 4.69e-28 113
Msa0819610 AT5G18550.3 54.167 96 32 3 44 134 16 104 4.70e-28 113
Msa0819610 AT5G18550.1 54.167 96 32 3 44 134 48 136 4.71e-28 114
Msa0819610 AT5G18550.4 54.167 96 32 3 44 134 48 136 6.49e-28 113
Msa0819610 AT5G63260.1 30.894 246 135 10 25 250 130 360 5.97e-21 93.2
Msa0819610 AT5G63260.1 41.558 77 43 2 44 120 331 405 2.54e-12 67.8
Msa0819610 AT5G63260.2 30.952 252 134 11 19 250 145 376 7.55e-21 93.2
Msa0819610 AT5G63260.2 41.558 77 43 2 44 120 347 421 2.56e-12 67.8
Msa0819610 AT3G48440.1 33.190 232 106 11 49 250 160 372 4.71e-19 87.8
Msa0819610 AT3G48440.1 42.857 84 38 3 44 123 343 420 2.06e-13 71.2
Msa0819610 AT1G48195.1 48.148 81 32 2 44 120 6 80 1.52e-16 73.9
Msa0819610 AT2G47850.4 42.308 78 43 1 44 121 164 239 1.20e-14 74.3
Msa0819610 AT2G47850.4 32.086 187 97 7 91 250 10 193 2.83e-14 73.2
Msa0819610 AT1G29600.2 33.051 118 60 6 41 156 125 225 1.78e-12 67.4
Msa0819610 AT1G29600.1 33.051 118 60 6 41 156 119 219 1.85e-12 67.4

Find 108 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAAACTTTGCAACATTT+TGG 0.120020 5_3:+56247494 None:intergenic
TTCATCTCTTGGGGTCAATT+TGG 0.215644 5_3:-56243086 Msa0819610:three_prime_UTR
CCGGCGGGAGAGACACTTTC+TGG 0.243331 5_3:-56244107 Msa0819610:CDS
AGACCCAGTTCTCATGTAAT+AGG 0.260132 5_3:+56244881 None:intergenic
ACCTTTGTCCGAGTCTTTAC+AGG 0.264902 5_3:-56243340 Msa0819610:CDS
AGAACTGGGTCTTGCAAGTT+TGG 0.276971 5_3:-56244870 Msa0819610:CDS
AGATTTCAGGTTACTCAATA+TGG 0.278926 5_3:-56246188 Msa0819610:intron
TGGACAGTTGAAAGCCTTCT+TGG 0.292560 5_3:+56243477 None:intergenic
AACTCACCTAGATGTTAAAA+AGG 0.326963 5_3:+56247326 None:intergenic
TGCTCATATTACAGAATCTA+TGG 0.337791 5_3:-56243615 Msa0819610:CDS
TTCGTATTGCAGAAGCTATT+CGG 0.340006 5_3:-56246544 Msa0819610:intron
CCGAGAATGTCATATTTATC+TGG 0.351902 5_3:-56244711 Msa0819610:CDS
ATCTATGGAGTATGCAAGTT+TGG 0.357289 5_3:-56243600 Msa0819610:CDS
TATAATAATAATATTCCAAT+TGG 0.364535 5_3:+56247461 None:intergenic
CCAGATAAATATGACATTCT+CGG 0.368337 5_3:+56244711 None:intergenic
CCACAACAGGCAGCTTCCTT+TGG 0.370576 5_3:-56244825 Msa0819610:CDS
TCCACAACTGTTACTTCATC+AGG 0.377937 5_3:-56244771 Msa0819610:CDS
GCATTATGCCTGCGCTGAGC+TGG 0.382644 5_3:-56244641 Msa0819610:CDS
GAGGGAGGGGACGCCGCCAC+TGG 0.385507 5_3:+56244792 None:intergenic
ATAAAACCAGTAGGCATTGC+AGG 0.387637 5_3:+56244161 None:intergenic
TGTCCCTATTACATGAGAAC+TGG 0.394120 5_3:-56244885 Msa0819610:CDS
TGCATGAATAGAGTTTCTAT+TGG 0.407759 5_3:-56243013 Msa0819610:three_prime_UTR
CTGCAGAATTGCAGATCAAA+AGG 0.410499 5_3:+56243225 None:intergenic
CTCAAATAATATACGCAGTC+AGG 0.416206 5_3:+56246446 None:intergenic
CTGACTGCGTATATTATTTG+AGG 0.418766 5_3:-56246445 Msa0819610:CDS
GTTGTTGTTAATGTTATTGT+CGG 0.419591 5_3:-56247534 None:intergenic
AAAGCCTTCTTGGATTAGTA+AGG 0.427107 5_3:+56243487 None:intergenic
GCCTCAATCAATGCCTTATC+CGG 0.436673 5_3:-56246483 Msa0819610:CDS
AAGAACTTCCTGAGAGAGTT+GGG 0.442954 5_3:-56246163 Msa0819610:CDS
GCAGGAAACCCACCAGCATA+TGG 0.444203 5_3:+56244744 None:intergenic
TCAGGTTGCCCAACTCTCTC+AGG 0.445004 5_3:+56246155 None:intergenic
TTCTGAGAGATAGCCACAAC+TGG 0.446204 5_3:+56243555 None:intergenic
AATAAACATACCTCACAATC+AGG 0.458208 5_3:+56246137 None:intergenic
GACCCAGTTCTCATGTAATA+GGG 0.459797 5_3:+56244882 None:intergenic
GGCATAATGCCTTGTGAAGA+AGG 0.459870 5_3:+56244654 None:intergenic
CAACAGGCAGCTTCCTTTGG+AGG 0.460678 5_3:-56244822 Msa0819610:CDS
CCATCTGGTGATAACATTGA+AGG 0.474193 5_3:-56247156 Msa0819610:intron
AGCTTGTTTAGATGAATCTT+CGG 0.476106 5_3:+56243386 None:intergenic
TGCGTATATTATTTGAGGAC+TGG 0.478797 5_3:-56246440 Msa0819610:CDS
TCACCAGGTCGATCCGGATA+AGG 0.480066 5_3:+56246470 None:intergenic
GGACTGGAATGTGTGGTTAC+GGG 0.482004 5_3:-56246424 Msa0819610:CDS
ATTGACCCCAAGAGATGAAA+GGG 0.482468 5_3:+56243090 None:intergenic
CAAGTTTCATCATCCACAAC+AGG 0.488215 5_3:-56244838 Msa0819610:CDS
TCAGGTTCACCAGGTCGATC+CGG 0.491203 5_3:+56246464 None:intergenic
AATGTCATATTTATCTGGAC+AGG 0.494113 5_3:-56244706 Msa0819610:CDS
TGCAGAATTGCAGATCAAAA+GGG 0.495104 5_3:+56243226 None:intergenic
ATTAACCCTGCAATGCCTAC+TGG 0.496129 5_3:-56244167 Msa0819610:CDS
AATGCTGGTTCTAATCCATC+TGG 0.496458 5_3:-56247171 Msa0819610:CDS
ATTACAGGTGAAATGTTAGC+AGG 0.497677 5_3:+56246380 None:intergenic
CCAAAGGAAGCTGCCTGTTG+TGG 0.502820 5_3:+56244825 None:intergenic
TTGTGACAATCATGAGCTTG+TGG 0.505135 5_3:-56243177 Msa0819610:three_prime_UTR
ATGGAGATGTCTCGGTTGGT+TGG 0.505736 5_3:+56243457 None:intergenic
GATCTGCAATTCTGCAGGGT+TGG 0.514799 5_3:-56243219 Msa0819610:three_prime_UTR
AGGAGGCACATAAGATTGAA+TGG 0.519059 5_3:+56244683 None:intergenic
GAAGAACTTCCTGAGAGAGT+TGG 0.521193 5_3:-56246164 Msa0819610:CDS
AGGACTGGAATGTGTGGTTA+CGG 0.521390 5_3:-56246425 Msa0819610:CDS
CCTTCAATGTTATCACCAGA+TGG 0.522380 5_3:+56247156 None:intergenic
GGGTTGGATAGTTTGTTCAA+TGG 0.523230 5_3:-56243203 Msa0819610:three_prime_UTR
TGTGACAATCATGAGCTTGT+GGG 0.528817 5_3:-56243176 Msa0819610:three_prime_UTR
AGTAACAGTTGTGGAGGGAG+GGG 0.529224 5_3:+56244779 None:intergenic
TTCGATGGAGATGTCTCGGT+TGG 0.530171 5_3:+56243453 None:intergenic
TTGTCAGTTGATTGTTTCGA+TGG 0.531763 5_3:+56243438 None:intergenic
ATAATAATATTCCAATTGGA+TGG 0.532368 5_3:+56247465 None:intergenic
ATGCTGGTGGGTTTCCTGCA+TGG 0.533086 5_3:-56244740 Msa0819610:CDS
TTGTTGTTAATGTTATTGTC+GGG 0.538910 5_3:-56247533 None:intergenic
TGTCTACGACTACATGAATC+CGG 0.541765 5_3:-56244126 Msa0819610:CDS
TATACGCAGTCAGGTTCACC+AGG 0.548463 5_3:+56246455 None:intergenic
TCCTGTAAAGACTCGGACAA+AGG 0.551237 5_3:+56243339 None:intergenic
AGAGACACTTTCTGGTGGAC+AGG 0.555997 5_3:-56244099 Msa0819610:intron
GAAGTAACAGTTGTGGAGGG+AGG 0.561560 5_3:+56244777 None:intergenic
AAGTAACAGTTGTGGAGGGA+GGG 0.565711 5_3:+56244778 None:intergenic
TTGTTTCGATGGAGATGTCT+CGG 0.567749 5_3:+56243449 None:intergenic
CAAATTTGATCATCCAGTTG+TGG 0.569323 5_3:-56243568 Msa0819610:CDS
TCCGGATAAGGCATTGATTG+AGG 0.571672 5_3:+56246482 None:intergenic
AATTGACCCCAAGAGATGAA+AGG 0.573938 5_3:+56243089 None:intergenic
TAGTTGCTCCAGCTCAGCGC+AGG 0.575573 5_3:+56244633 None:intergenic
CTCTCCTTACTAATCCAAGA+AGG 0.580301 5_3:-56243491 Msa0819610:CDS
GCTGAGCTGGAGCAACTACA+TGG 0.582157 5_3:-56244628 Msa0819610:intron
GGATGATCAAATTTGCATGT+TGG 0.583840 5_3:+56243576 None:intergenic
CCAGAAAGTGTCTCTCCCGC+CGG 0.585264 5_3:+56244107 None:intergenic
GTGACAATCATGAGCTTGTG+GGG 0.594243 5_3:-56243175 Msa0819610:three_prime_UTR
ACCTGATGAAGTAACAGTTG+TGG 0.598830 5_3:+56244770 None:intergenic
GTCCCTATTACATGAGAACT+GGG 0.603851 5_3:-56244884 Msa0819610:CDS
TGGAGGAGCTTATCCAGTGG+CGG 0.605551 5_3:-56244805 Msa0819610:CDS
AGTTTATTCCTGTAAAGACT+CGG 0.607535 5_3:+56243332 None:intergenic
ATGCCTTATCCGGATCGACC+TGG 0.607838 5_3:-56246473 Msa0819610:CDS
TGATGAAGTAACAGTTGTGG+AGG 0.607944 5_3:+56244773 None:intergenic
GAATACTGATAGAGTAGGCG+AGG 0.609226 5_3:+56243521 None:intergenic
ATTCTCGGCATTGACCATGC+AGG 0.609928 5_3:+56244726 None:intergenic
GCATCGAATACTGATAGAGT+AGG 0.610445 5_3:+56243516 None:intergenic
GTGGCTATCTCTCAGAACTA+CGG 0.612160 5_3:-56243549 Msa0819610:CDS
TACGACTACATGAATCCGGC+GGG 0.613456 5_3:-56244122 Msa0819610:CDS
CACTGGATAAGCTCCTCCAA+AGG 0.616300 5_3:+56244809 None:intergenic
TTAGATCCAATAAAACCAGT+AGG 0.616664 5_3:+56244152 None:intergenic
GCAGAATTGCAGATCAAAAG+GGG 0.625119 5_3:+56243227 None:intergenic
GCGGGAGAGACACTTTCTGG+TGG 0.637718 5_3:-56244104 Msa0819610:CDS
TAAAACCAGTAGGCATTGCA+GGG 0.641286 5_3:+56244162 None:intergenic
CTTTGGAGGAGCTTATCCAG+TGG 0.642465 5_3:-56244808 Msa0819610:CDS
TTACAGGTGAAATGTTAGCA+GGG 0.642989 5_3:+56246381 None:intergenic
AGTTGGGCAACCTGATTGTG+AGG 0.647405 5_3:-56246147 Msa0819610:intron
TATTTGAGGACTGGAATGTG+TGG 0.661824 5_3:-56246431 Msa0819610:CDS
CTACGACTACATGAATCCGG+CGG 0.676232 5_3:-56244123 Msa0819610:CDS
AATACTGATAGAGTAGGCGA+GGG 0.679258 5_3:+56243522 None:intergenic
TGTTAGCAGGGTGATTATAG+CGG 0.683660 5_3:+56246393 None:intergenic
CAGAATTGCAGATCAAAAGG+GGG 0.684919 5_3:+56243228 None:intergenic
GATGAAGTAACAGTTGTGGA+GGG 0.690790 5_3:+56244774 None:intergenic
TTGACCCCAAGAGATGAAAG+GGG 0.697209 5_3:+56243091 None:intergenic
TGACAATCATGAGCTTGTGG+GGG 0.723888 5_3:-56243174 Msa0819610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATAATATTCCAAT+TGG + chr5_3:56243037-56243056 None:intergenic 10.0%
!!! ATAGTTTATAGATTATTTTT+TGG + chr5_3:56246724-56246743 None:intergenic 10.0%
!!! AAAAGTATCTTAAAATATTA+GGG + chr5_3:56246793-56246812 None:intergenic 10.0%
!!! TAAAAGTATCTTAAAATATT+AGG + chr5_3:56246794-56246813 None:intergenic 10.0%
!! AAAAAGAAAGAAAAAAAAAA+AGG + chr5_3:56247215-56247234 None:intergenic 10.0%
!!! TTTTTTTTCTTTCTTTTTTT+CGG - chr5_3:56247217-56247236 Msa0819610:intron 10.0%
!! TATAATAATAATATTCCAAT+TGG + chr5_3:56243037-56243056 None:intergenic 10.0%
!!! ATAGTTTATAGATTATTTTT+TGG + chr5_3:56246724-56246743 None:intergenic 10.0%
!!! AAAAGTATCTTAAAATATTA+GGG + chr5_3:56246793-56246812 None:intergenic 10.0%
!!! TAAAAGTATCTTAAAATATT+AGG + chr5_3:56246794-56246813 None:intergenic 10.0%
!! AAAAAGAAAGAAAAAAAAAA+AGG + chr5_3:56247215-56247234 None:intergenic 10.0%
!!! TTTTTTTTCTTTCTTTTTTT+CGG - chr5_3:56247217-56247236 Msa0819610:intron 10.0%
!!! GGTTTTATAATATGTAATTT+AGG - chr5_3:56244262-56244281 Msa0819610:intron 15.0%
!! ACAAAAATCTAATAAATGTT+TGG + chr5_3:56244874-56244893 None:intergenic 15.0%
!!! TTATTAGATTTTTGTTTTGA+TGG - chr5_3:56244879-56244898 Msa0819610:CDS 15.0%
!! CTCTTAATTAAGTTAATTAT+AGG + chr5_3:56245130-56245149 None:intergenic 15.0%
!! TTAACTTAATTAAGAGTTTA+TGG - chr5_3:56245134-56245153 Msa0819610:intron 15.0%
!! TACTAATATTAAATTCTGTT+TGG + chr5_3:56245317-56245336 None:intergenic 15.0%
!!! TTTTTTTCACAATAAAAAGT+TGG + chr5_3:56246623-56246642 None:intergenic 15.0%
!!! TTGAAGTTTTATTTTTCTTT+TGG - chr5_3:56247188-56247207 Msa0819610:CDS 15.0%
!!! GGTTTTATAATATGTAATTT+AGG - chr5_3:56244262-56244281 Msa0819610:intron 15.0%
!! ACAAAAATCTAATAAATGTT+TGG + chr5_3:56244874-56244893 None:intergenic 15.0%
!!! TTATTAGATTTTTGTTTTGA+TGG - chr5_3:56244879-56244898 Msa0819610:CDS 15.0%
!! CTCTTAATTAAGTTAATTAT+AGG + chr5_3:56245130-56245149 None:intergenic 15.0%
!! TTAACTTAATTAAGAGTTTA+TGG - chr5_3:56245134-56245153 Msa0819610:intron 15.0%
!! TACTAATATTAAATTCTGTT+TGG + chr5_3:56245317-56245336 None:intergenic 15.0%
!!! TTTTTTTCACAATAAAAAGT+TGG + chr5_3:56246623-56246642 None:intergenic 15.0%
!!! TTGAAGTTTTATTTTTCTTT+TGG - chr5_3:56247188-56247207 Msa0819610:CDS 15.0%
!! ATAATAATATTCCAATTGGA+TGG + chr5_3:56243033-56243052 None:intergenic 20.0%
!!! TTTTTACCTTTTTAACATCT+AGG - chr5_3:56243163-56243182 Msa0819610:three_prime_UTR 20.0%
!! ATTTCATCTTAAAAGCTTAA+AGG - chr5_3:56243212-56243231 Msa0819610:three_prime_UTR 20.0%
!! TTTCATCTTAAAAGCTTAAA+GGG - chr5_3:56243213-56243232 Msa0819610:three_prime_UTR 20.0%
!!! ATCTTGTTAAATTTTCTCAT+TGG - chr5_3:56244241-56244260 Msa0819610:intron 20.0%
!!! TAAAAAGTGAATTTGTTCAA+GGG + chr5_3:56244509-56244528 None:intergenic 20.0%
!!! ATGATATTTACTATTTTCCT+CGG - chr5_3:56244532-56244551 Msa0819610:intron 20.0%
!! AAATCTAATAAATGTTTGGA+AGG + chr5_3:56244870-56244889 None:intergenic 20.0%
!! ATCTAGTAAATAAATTCTAC+AGG + chr5_3:56244921-56244940 None:intergenic 20.0%
!!! TTATCTTTTTGTTATAGAAG+TGG + chr5_3:56245195-56245214 None:intergenic 20.0%
!!! CTATTTTATTTGTCGAAAAA+GGG - chr5_3:56246301-56246320 Msa0819610:intron 20.0%
!! ATAATAATATTCCAATTGGA+TGG + chr5_3:56243033-56243052 None:intergenic 20.0%
!!! TTTTTACCTTTTTAACATCT+AGG - chr5_3:56243163-56243182 Msa0819610:three_prime_UTR 20.0%
!! ATTTCATCTTAAAAGCTTAA+AGG - chr5_3:56243212-56243231 Msa0819610:three_prime_UTR 20.0%
!! TTTCATCTTAAAAGCTTAAA+GGG - chr5_3:56243213-56243232 Msa0819610:three_prime_UTR 20.0%
!!! ATCTTGTTAAATTTTCTCAT+TGG - chr5_3:56244241-56244260 Msa0819610:intron 20.0%
!!! TAAAAAGTGAATTTGTTCAA+GGG + chr5_3:56244509-56244528 None:intergenic 20.0%
!!! ATGATATTTACTATTTTCCT+CGG - chr5_3:56244532-56244551 Msa0819610:intron 20.0%
!! AAATCTAATAAATGTTTGGA+AGG + chr5_3:56244870-56244889 None:intergenic 20.0%
!! ATCTAGTAAATAAATTCTAC+AGG + chr5_3:56244921-56244940 None:intergenic 20.0%
!!! TTATCTTTTTGTTATAGAAG+TGG + chr5_3:56245195-56245214 None:intergenic 20.0%
!!! CTATTTTATTTGTCGAAAAA+GGG - chr5_3:56246301-56246320 Msa0819610:intron 20.0%
!! TTGAAAACTTGTCTATTTTC+TGG + chr5_3:56243303-56243322 None:intergenic 25.0%
!!! TGATGATGTGTTTCTATTTT+TGG - chr5_3:56243500-56243519 Msa0819610:CDS 25.0%
! TTTGCTTTATGATGCAATAA+AGG - chr5_3:56243757-56243776 Msa0819610:intron 25.0%
! TTGCTTTATGATGCAATAAA+GGG - chr5_3:56243758-56243777 Msa0819610:intron 25.0%
! TTATTACTGCTTGAATTTGT+TGG - chr5_3:56243882-56243901 Msa0819610:intron 25.0%
! TCAGAAGAAAAATCATGAAA+AGG + chr5_3:56244160-56244179 None:intergenic 25.0%
! CTCATACTTTATTAGATTTC+AGG - chr5_3:56244294-56244313 Msa0819610:intron 25.0%
!!! TTGTGAGGTATGTTTATTTT+TGG - chr5_3:56244363-56244382 Msa0819610:intron 25.0%
! TTAAGAGTGAATTCAAGAAT+AGG - chr5_3:56244473-56244492 Msa0819610:intron 25.0%
!! GTAAAAAGTGAATTTGTTCA+AGG + chr5_3:56244510-56244529 None:intergenic 25.0%
!! ACTTAATTTTTGTCCTTTTG+TGG - chr5_3:56244579-56244598 Msa0819610:intron 25.0%
! AATTAGCAAGTATTTCAAAC+AGG + chr5_3:56244644-56244663 None:intergenic 25.0%
! TAGAACACCAATAAATGAAA+AGG - chr5_3:56244756-56244775 Msa0819610:CDS 25.0%
! AGAACACCAATAAATGAAAA+GGG - chr5_3:56244757-56244776 Msa0819610:CDS 25.0%
!! TTTCTTCCCTTTTCATTTAT+TGG + chr5_3:56244766-56244785 None:intergenic 25.0%
! CTTCTTCTTAAATTATGTCA+TGG + chr5_3:56244984-56245003 None:intergenic 25.0%
! TGACATAATTTAAGAAGAAG+AGG - chr5_3:56244984-56245003 Msa0819610:intron 25.0%
! AATAAGATGAAAAGATCTTC+AGG - chr5_3:56245261-56245280 Msa0819610:intron 25.0%
! ATAAGATGAAAAGATCTTCA+GGG - chr5_3:56245262-56245281 Msa0819610:intron 25.0%
!!! AATCTACAATTGTTGCTTTT+AGG - chr5_3:56245576-56245595 Msa0819610:intron 25.0%
!!! GCTATTTTATTTGTCGAAAA+AGG - chr5_3:56246300-56246319 Msa0819610:intron 25.0%
! ACATTATCAATTAATCCACT+TGG - chr5_3:56246541-56246560 Msa0819610:intron 25.0%
!! CATTTTCTTCTTAATGCTTA+GGG - chr5_3:56246587-56246606 Msa0819610:intron 25.0%
! CAATAAAAAGTTGGAACAAA+CGG + chr5_3:56246614-56246633 None:intergenic 25.0%
! AGTATCTTAAAATATTAGGG+AGG + chr5_3:56246790-56246809 None:intergenic 25.0%
!! GAATTTCACTCAGTATTTTT+AGG + chr5_3:56247443-56247462 None:intergenic 25.0%
!! TTGAAAACTTGTCTATTTTC+TGG + chr5_3:56243303-56243322 None:intergenic 25.0%
!!! TGATGATGTGTTTCTATTTT+TGG - chr5_3:56243500-56243519 Msa0819610:CDS 25.0%
! TTTGCTTTATGATGCAATAA+AGG - chr5_3:56243757-56243776 Msa0819610:intron 25.0%
! TTGCTTTATGATGCAATAAA+GGG - chr5_3:56243758-56243777 Msa0819610:intron 25.0%
! TTATTACTGCTTGAATTTGT+TGG - chr5_3:56243882-56243901 Msa0819610:intron 25.0%
! TCAGAAGAAAAATCATGAAA+AGG + chr5_3:56244160-56244179 None:intergenic 25.0%
! CTCATACTTTATTAGATTTC+AGG - chr5_3:56244294-56244313 Msa0819610:intron 25.0%
!!! TTGTGAGGTATGTTTATTTT+TGG - chr5_3:56244363-56244382 Msa0819610:intron 25.0%
! TTAAGAGTGAATTCAAGAAT+AGG - chr5_3:56244473-56244492 Msa0819610:intron 25.0%
!! GTAAAAAGTGAATTTGTTCA+AGG + chr5_3:56244510-56244529 None:intergenic 25.0%
!! ACTTAATTTTTGTCCTTTTG+TGG - chr5_3:56244579-56244598 Msa0819610:intron 25.0%
! AATTAGCAAGTATTTCAAAC+AGG + chr5_3:56244644-56244663 None:intergenic 25.0%
! TAGAACACCAATAAATGAAA+AGG - chr5_3:56244756-56244775 Msa0819610:CDS 25.0%
! AGAACACCAATAAATGAAAA+GGG - chr5_3:56244757-56244776 Msa0819610:CDS 25.0%
!! TTTCTTCCCTTTTCATTTAT+TGG + chr5_3:56244766-56244785 None:intergenic 25.0%
! CTTCTTCTTAAATTATGTCA+TGG + chr5_3:56244984-56245003 None:intergenic 25.0%
! TGACATAATTTAAGAAGAAG+AGG - chr5_3:56244984-56245003 Msa0819610:intron 25.0%
! AATAAGATGAAAAGATCTTC+AGG - chr5_3:56245261-56245280 Msa0819610:intron 25.0%
! ATAAGATGAAAAGATCTTCA+GGG - chr5_3:56245262-56245281 Msa0819610:intron 25.0%
!!! AATCTACAATTGTTGCTTTT+AGG - chr5_3:56245576-56245595 Msa0819610:intron 25.0%
!!! GCTATTTTATTTGTCGAAAA+AGG - chr5_3:56246300-56246319 Msa0819610:intron 25.0%
! ACATTATCAATTAATCCACT+TGG - chr5_3:56246541-56246560 Msa0819610:intron 25.0%
!! CATTTTCTTCTTAATGCTTA+GGG - chr5_3:56246587-56246606 Msa0819610:intron 25.0%
! CAATAAAAAGTTGGAACAAA+CGG + chr5_3:56246614-56246633 None:intergenic 25.0%
! AGTATCTTAAAATATTAGGG+AGG + chr5_3:56246790-56246809 None:intergenic 25.0%
!! GAATTTCACTCAGTATTTTT+AGG + chr5_3:56247443-56247462 None:intergenic 25.0%
AACTCACCTAGATGTTAAAA+AGG + chr5_3:56243172-56243191 None:intergenic 30.0%
! TGTTCTGATCATCATTGTTT+TGG - chr5_3:56243438-56243457 Msa0819610:CDS 30.0%
!! TTAACTTGTGTGAGTGAAAA+AGG - chr5_3:56243630-56243649 Msa0819610:CDS 30.0%
TGATTCTATGCAAGTAAACA+TGG + chr5_3:56243691-56243710 None:intergenic 30.0%
TTATTATACTTGATCGCACA+TGG - chr5_3:56243715-56243734 Msa0819610:intron 30.0%
CTGATCCAGTTTAATTGTAT+TGG - chr5_3:56243837-56243856 Msa0819610:intron 30.0%
ACAGTCCAATACAATTAAAC+TGG + chr5_3:56243845-56243864 None:intergenic 30.0%
GAAAAGGAAACAAAAGAAAG+AGG + chr5_3:56244144-56244163 None:intergenic 30.0%
! TTTTATGAACATGTAGTCTG+TGG - chr5_3:56244211-56244230 Msa0819610:intron 30.0%
!! AGATTTCAGGTTACTCAATA+TGG - chr5_3:56244307-56244326 Msa0819610:intron 30.0%
AATAAACATACCTCACAATC+AGG + chr5_3:56244361-56244380 None:intergenic 30.0%
GGACAAAAATTAAGTGCAAA+AGG + chr5_3:56244574-56244593 None:intergenic 30.0%
AGGCAAAACCTATTATTGAA+GGG + chr5_3:56244624-56244643 None:intergenic 30.0%
AGATCTCTCTATGACAATAA+TGG - chr5_3:56244937-56244956 Msa0819610:intron 30.0%
GAGGAAATAATATCAAGTTC+AGG - chr5_3:56245003-56245022 Msa0819610:intron 30.0%
! ACTGTTTTCATAAGTTATCC+TGG - chr5_3:56245226-56245245 Msa0819610:intron 30.0%
! TTTGGAATAGCTTATGGAAA+CGG + chr5_3:56245299-56245318 None:intergenic 30.0%
! ATTCTGTTTGGAATAGCTTA+TGG + chr5_3:56245305-56245324 None:intergenic 30.0%
! TTGCAGTATTTTCTTAAGAC+AGG - chr5_3:56245363-56245382 Msa0819610:intron 30.0%
!! ACCTAAAGTATTGAAGACAA+CGG + chr5_3:56245451-56245470 None:intergenic 30.0%
! AATAAAGCACTTGGTTCAAA+GGG + chr5_3:56245499-56245518 None:intergenic 30.0%
! AAATAAAGCACTTGGTTCAA+AGG + chr5_3:56245500-56245519 None:intergenic 30.0%
! TGTGGAAAAAATAAAGCACT+TGG + chr5_3:56245508-56245527 None:intergenic 30.0%
CATTAGAAGAGTAAACTTTG+TGG + chr5_3:56245526-56245545 None:intergenic 30.0%
CACAAAGTTTACTCTTCTAA+TGG - chr5_3:56245524-56245543 Msa0819610:intron 30.0%
CCAGATAAATATGACATTCT+CGG + chr5_3:56245787-56245806 None:intergenic 30.0%
AATGTCATATTTATCTGGAC+AGG - chr5_3:56245789-56245808 Msa0819610:intron 30.0%
! ATATACTGATTAACCTGGTA+TGG - chr5_3:56245956-56245975 Msa0819610:intron 30.0%
TTAGCTAAACGAATACATGA+AGG - chr5_3:56245999-56246018 Msa0819610:intron 30.0%
!! CATTGATTTCCAATCACATT+CGG - chr5_3:56246099-56246118 Msa0819610:intron 30.0%
!! GTTCTGTTTTGGATGTTAAT+CGG + chr5_3:56246135-56246154 None:intergenic 30.0%
TTAGATCCAATAAAACCAGT+AGG + chr5_3:56246346-56246365 None:intergenic 30.0%
! CTCATAAAGTATTTACAGTC+TGG + chr5_3:56246457-56246476 None:intergenic 30.0%
TGTAAATACTTTATGAGCAC+CGG - chr5_3:56246460-56246479 Msa0819610:CDS 30.0%
TTTGTGCTATCCTTTCTTTA+GGG + chr5_3:56246522-56246541 None:intergenic 30.0%
TAAGAAGAAAATGCACTTAC+AGG + chr5_3:56246580-56246599 None:intergenic 30.0%
! GCATTTTCTTCTTAATGCTT+AGG - chr5_3:56246586-56246605 Msa0819610:intron 30.0%
! TGATTTTCTGATTCCTATGT+TGG - chr5_3:56246835-56246854 Msa0819610:intron 30.0%
TGCTCATATTACAGAATCTA+TGG - chr5_3:56246880-56246899 Msa0819610:intron 30.0%
! AGCTTGTTTAGATGAATCTT+CGG + chr5_3:56247112-56247131 None:intergenic 30.0%
AGTTTATTCCTGTAAAGACT+CGG + chr5_3:56247166-56247185 None:intergenic 30.0%
TGCATGAATAGAGTTTCTAT+TGG - chr5_3:56247482-56247501 Msa0819610:five_prime_UTR 30.0%
AACTCACCTAGATGTTAAAA+AGG + chr5_3:56243172-56243191 None:intergenic 30.0%
! TGTTCTGATCATCATTGTTT+TGG - chr5_3:56243438-56243457 Msa0819610:CDS 30.0%
!! TTAACTTGTGTGAGTGAAAA+AGG - chr5_3:56243630-56243649 Msa0819610:CDS 30.0%
TGATTCTATGCAAGTAAACA+TGG + chr5_3:56243691-56243710 None:intergenic 30.0%
TTATTATACTTGATCGCACA+TGG - chr5_3:56243715-56243734 Msa0819610:intron 30.0%
CTGATCCAGTTTAATTGTAT+TGG - chr5_3:56243837-56243856 Msa0819610:intron 30.0%
ACAGTCCAATACAATTAAAC+TGG + chr5_3:56243845-56243864 None:intergenic 30.0%
GAAAAGGAAACAAAAGAAAG+AGG + chr5_3:56244144-56244163 None:intergenic 30.0%
! TTTTATGAACATGTAGTCTG+TGG - chr5_3:56244211-56244230 Msa0819610:intron 30.0%
!! AGATTTCAGGTTACTCAATA+TGG - chr5_3:56244307-56244326 Msa0819610:intron 30.0%
AATAAACATACCTCACAATC+AGG + chr5_3:56244361-56244380 None:intergenic 30.0%
GGACAAAAATTAAGTGCAAA+AGG + chr5_3:56244574-56244593 None:intergenic 30.0%
AGGCAAAACCTATTATTGAA+GGG + chr5_3:56244624-56244643 None:intergenic 30.0%
AGATCTCTCTATGACAATAA+TGG - chr5_3:56244937-56244956 Msa0819610:intron 30.0%
GAGGAAATAATATCAAGTTC+AGG - chr5_3:56245003-56245022 Msa0819610:intron 30.0%
! ACTGTTTTCATAAGTTATCC+TGG - chr5_3:56245226-56245245 Msa0819610:intron 30.0%
! TTTGGAATAGCTTATGGAAA+CGG + chr5_3:56245299-56245318 None:intergenic 30.0%
! ATTCTGTTTGGAATAGCTTA+TGG + chr5_3:56245305-56245324 None:intergenic 30.0%
! TTGCAGTATTTTCTTAAGAC+AGG - chr5_3:56245363-56245382 Msa0819610:intron 30.0%
!! ACCTAAAGTATTGAAGACAA+CGG + chr5_3:56245451-56245470 None:intergenic 30.0%
! AATAAAGCACTTGGTTCAAA+GGG + chr5_3:56245499-56245518 None:intergenic 30.0%
! AAATAAAGCACTTGGTTCAA+AGG + chr5_3:56245500-56245519 None:intergenic 30.0%
! TGTGGAAAAAATAAAGCACT+TGG + chr5_3:56245508-56245527 None:intergenic 30.0%
CATTAGAAGAGTAAACTTTG+TGG + chr5_3:56245526-56245545 None:intergenic 30.0%
CACAAAGTTTACTCTTCTAA+TGG - chr5_3:56245524-56245543 Msa0819610:intron 30.0%
CCAGATAAATATGACATTCT+CGG + chr5_3:56245787-56245806 None:intergenic 30.0%
AATGTCATATTTATCTGGAC+AGG - chr5_3:56245789-56245808 Msa0819610:intron 30.0%
! ATATACTGATTAACCTGGTA+TGG - chr5_3:56245956-56245975 Msa0819610:intron 30.0%
TTAGCTAAACGAATACATGA+AGG - chr5_3:56245999-56246018 Msa0819610:intron 30.0%
!! CATTGATTTCCAATCACATT+CGG - chr5_3:56246099-56246118 Msa0819610:intron 30.0%
!! GTTCTGTTTTGGATGTTAAT+CGG + chr5_3:56246135-56246154 None:intergenic 30.0%
TTAGATCCAATAAAACCAGT+AGG + chr5_3:56246346-56246365 None:intergenic 30.0%
! CTCATAAAGTATTTACAGTC+TGG + chr5_3:56246457-56246476 None:intergenic 30.0%
TGTAAATACTTTATGAGCAC+CGG - chr5_3:56246460-56246479 Msa0819610:CDS 30.0%
TTTGTGCTATCCTTTCTTTA+GGG + chr5_3:56246522-56246541 None:intergenic 30.0%
TAAGAAGAAAATGCACTTAC+AGG + chr5_3:56246580-56246599 None:intergenic 30.0%
! GCATTTTCTTCTTAATGCTT+AGG - chr5_3:56246586-56246605 Msa0819610:intron 30.0%
! TGATTTTCTGATTCCTATGT+TGG - chr5_3:56246835-56246854 Msa0819610:intron 30.0%
TGCTCATATTACAGAATCTA+TGG - chr5_3:56246880-56246899 Msa0819610:intron 30.0%
! AGCTTGTTTAGATGAATCTT+CGG + chr5_3:56247112-56247131 None:intergenic 30.0%
AGTTTATTCCTGTAAAGACT+CGG + chr5_3:56247166-56247185 None:intergenic 30.0%
TGCATGAATAGAGTTTCTAT+TGG - chr5_3:56247482-56247501 Msa0819610:five_prime_UTR 30.0%
! CTGCAAACTTTGCAACATTT+TGG + chr5_3:56243004-56243023 None:intergenic 35.0%
! TGCAGAATTTTCCATCCAAT+TGG - chr5_3:56243019-56243038 Msa0819610:three_prime_UTR 35.0%
TAAAAGCTTAAAGGGTCATC+AGG - chr5_3:56243221-56243240 Msa0819610:three_prime_UTR 35.0%
AAAAGCTTAAAGGGTCATCA+GGG - chr5_3:56243222-56243241 Msa0819610:three_prime_UTR 35.0%
!! AGACAAGTTTTCAAGAATGC+TGG - chr5_3:56243309-56243328 Msa0819610:three_prime_UTR 35.0%
!!! CTGATCATCATTGTTTTGGT+TGG - chr5_3:56243442-56243461 Msa0819610:CDS 35.0%
CAATGTTGTTGTATTGTGTG+AGG - chr5_3:56243580-56243599 Msa0819610:CDS 35.0%
TTCTGCAATACGAATCACAA+AGG + chr5_3:56243945-56243964 None:intergenic 35.0%
TTCGTATTGCAGAAGCTATT+CGG - chr5_3:56243951-56243970 Msa0819610:intron 35.0%
CTCAAATAATATACGCAGTC+AGG + chr5_3:56244052-56244071 None:intergenic 35.0%
CTGACTGCGTATATTATTTG+AGG - chr5_3:56244050-56244069 Msa0819610:intron 35.0%
TGCGTATATTATTTGAGGAC+TGG - chr5_3:56244055-56244074 Msa0819610:intron 35.0%
TTACAGGTGAAATGTTAGCA+GGG + chr5_3:56244117-56244136 None:intergenic 35.0%
ATTACAGGTGAAATGTTAGC+AGG + chr5_3:56244118-56244137 None:intergenic 35.0%
TGCTAACATTTCACCTGTAA+TGG - chr5_3:56244117-56244136 Msa0819610:CDS 35.0%
AAAAGAAAGAGGTCCATTAC+AGG + chr5_3:56244133-56244152 None:intergenic 35.0%
!! TTTCTTTCCCTCGTTTTGAA+CGG - chr5_3:56244407-56244426 Msa0819610:intron 35.0%
TGGAAATAAGAGACCACAAA+AGG + chr5_3:56244595-56244614 None:intergenic 35.0%
CTATTATTGAAGGGGTTGAA+TGG + chr5_3:56244615-56244634 None:intergenic 35.0%
CATTCAACCCCTTCAATAAT+AGG - chr5_3:56244613-56244632 Msa0819610:intron 35.0%
GGCAAAACCTATTATTGAAG+GGG + chr5_3:56244623-56244642 None:intergenic 35.0%
CAGGCAAAACCTATTATTGA+AGG + chr5_3:56244625-56244644 None:intergenic 35.0%
!! TGCTCTGAAATATTTAGCCT+AGG - chr5_3:56244719-56244738 Msa0819610:CDS 35.0%
!! GCTCTGAAATATTTAGCCTA+GGG - chr5_3:56244720-56244739 Msa0819610:CDS 35.0%
AAGAAACTGATGTAAGTCGT+AGG - chr5_3:56244780-56244799 Msa0819610:CDS 35.0%
AATAAGTTATCCTGCCAATG+TGG - chr5_3:56244827-56244846 Msa0819610:CDS 35.0%
! CAAAAGACGATTTTCCACAT+TGG + chr5_3:56244844-56244863 None:intergenic 35.0%
AAGACAGGAACATGTAAGTA+TGG - chr5_3:56245378-56245397 Msa0819610:intron 35.0%
AATATCATCATCCCAAAGAC+AGG - chr5_3:56245412-56245431 Msa0819610:intron 35.0%
!! CCTAAAGTATTGAAGACAAC+GGG + chr5_3:56245450-56245469 None:intergenic 35.0%
CCGAGAATGTCATATTTATC+TGG - chr5_3:56245784-56245803 Msa0819610:intron 35.0%
! CACACATATACTGATTAACC+TGG - chr5_3:56245951-56245970 Msa0819610:intron 35.0%
! GACAGTTTTTAAACCATACC+AGG + chr5_3:56245972-56245991 None:intergenic 35.0%
GCGACATCTAGTAGTAAAAA+TGG + chr5_3:56246048-56246067 None:intergenic 35.0%
TTTCCTAAACAAGACAAGAC+TGG + chr5_3:56246157-56246176 None:intergenic 35.0%
!! GGAAATATTCCTAGCCTTTT+AGG - chr5_3:56246172-56246191 Msa0819610:CDS 35.0%
ACATAGCCAAACATCCTAAA+AGG + chr5_3:56246189-56246208 None:intergenic 35.0%
AGATCCATATTTGCATGTTC+CGG + chr5_3:56246482-56246501 None:intergenic 35.0%
GTTTGTGCTATCCTTTCTTT+AGG + chr5_3:56246523-56246542 None:intergenic 35.0%
ATCTATGGAGTATGCAAGTT+TGG - chr5_3:56246895-56246914 Msa0819610:intron 35.0%
GGATGATCAAATTTGCATGT+TGG + chr5_3:56246922-56246941 None:intergenic 35.0%
CAAATTTGATCATCCAGTTG+TGG - chr5_3:56246927-56246946 Msa0819610:intron 35.0%
!! AAAGCCTTCTTGGATTAGTA+AGG + chr5_3:56247011-56247030 None:intergenic 35.0%
TTGTCAGTTGATTGTTTCGA+TGG + chr5_3:56247060-56247079 None:intergenic 35.0%
TGCAGAATTGCAGATCAAAA+GGG + chr5_3:56247272-56247291 None:intergenic 35.0%
! TTTTGATCTGCAATTCTGCA+GGG - chr5_3:56247272-56247291 Msa0819610:intron 35.0%
!!! GATAGAGGGCATTTTTTTTG+TGG - chr5_3:56247343-56247362 Msa0819610:five_prime_UTR 35.0%
! CTGCAAACTTTGCAACATTT+TGG + chr5_3:56243004-56243023 None:intergenic 35.0%
! TGCAGAATTTTCCATCCAAT+TGG - chr5_3:56243019-56243038 Msa0819610:three_prime_UTR 35.0%
TAAAAGCTTAAAGGGTCATC+AGG - chr5_3:56243221-56243240 Msa0819610:three_prime_UTR 35.0%
AAAAGCTTAAAGGGTCATCA+GGG - chr5_3:56243222-56243241 Msa0819610:three_prime_UTR 35.0%
!! AGACAAGTTTTCAAGAATGC+TGG - chr5_3:56243309-56243328 Msa0819610:three_prime_UTR 35.0%
!!! CTGATCATCATTGTTTTGGT+TGG - chr5_3:56243442-56243461 Msa0819610:CDS 35.0%
CAATGTTGTTGTATTGTGTG+AGG - chr5_3:56243580-56243599 Msa0819610:CDS 35.0%
TTCTGCAATACGAATCACAA+AGG + chr5_3:56243945-56243964 None:intergenic 35.0%
TTCGTATTGCAGAAGCTATT+CGG - chr5_3:56243951-56243970 Msa0819610:intron 35.0%
CTCAAATAATATACGCAGTC+AGG + chr5_3:56244052-56244071 None:intergenic 35.0%
CTGACTGCGTATATTATTTG+AGG - chr5_3:56244050-56244069 Msa0819610:intron 35.0%
TGCGTATATTATTTGAGGAC+TGG - chr5_3:56244055-56244074 Msa0819610:intron 35.0%
TTACAGGTGAAATGTTAGCA+GGG + chr5_3:56244117-56244136 None:intergenic 35.0%
ATTACAGGTGAAATGTTAGC+AGG + chr5_3:56244118-56244137 None:intergenic 35.0%
TGCTAACATTTCACCTGTAA+TGG - chr5_3:56244117-56244136 Msa0819610:CDS 35.0%
AAAAGAAAGAGGTCCATTAC+AGG + chr5_3:56244133-56244152 None:intergenic 35.0%
!! TTTCTTTCCCTCGTTTTGAA+CGG - chr5_3:56244407-56244426 Msa0819610:intron 35.0%
TGGAAATAAGAGACCACAAA+AGG + chr5_3:56244595-56244614 None:intergenic 35.0%
CTATTATTGAAGGGGTTGAA+TGG + chr5_3:56244615-56244634 None:intergenic 35.0%
CATTCAACCCCTTCAATAAT+AGG - chr5_3:56244613-56244632 Msa0819610:intron 35.0%
GGCAAAACCTATTATTGAAG+GGG + chr5_3:56244623-56244642 None:intergenic 35.0%
CAGGCAAAACCTATTATTGA+AGG + chr5_3:56244625-56244644 None:intergenic 35.0%
!! TGCTCTGAAATATTTAGCCT+AGG - chr5_3:56244719-56244738 Msa0819610:CDS 35.0%
!! GCTCTGAAATATTTAGCCTA+GGG - chr5_3:56244720-56244739 Msa0819610:CDS 35.0%
AAGAAACTGATGTAAGTCGT+AGG - chr5_3:56244780-56244799 Msa0819610:CDS 35.0%
AATAAGTTATCCTGCCAATG+TGG - chr5_3:56244827-56244846 Msa0819610:CDS 35.0%
! CAAAAGACGATTTTCCACAT+TGG + chr5_3:56244844-56244863 None:intergenic 35.0%
AAGACAGGAACATGTAAGTA+TGG - chr5_3:56245378-56245397 Msa0819610:intron 35.0%
AATATCATCATCCCAAAGAC+AGG - chr5_3:56245412-56245431 Msa0819610:intron 35.0%
!! CCTAAAGTATTGAAGACAAC+GGG + chr5_3:56245450-56245469 None:intergenic 35.0%
CCGAGAATGTCATATTTATC+TGG - chr5_3:56245784-56245803 Msa0819610:intron 35.0%
! CACACATATACTGATTAACC+TGG - chr5_3:56245951-56245970 Msa0819610:intron 35.0%
! GACAGTTTTTAAACCATACC+AGG + chr5_3:56245972-56245991 None:intergenic 35.0%
GCGACATCTAGTAGTAAAAA+TGG + chr5_3:56246048-56246067 None:intergenic 35.0%
TTTCCTAAACAAGACAAGAC+TGG + chr5_3:56246157-56246176 None:intergenic 35.0%
!! GGAAATATTCCTAGCCTTTT+AGG - chr5_3:56246172-56246191 Msa0819610:CDS 35.0%
ACATAGCCAAACATCCTAAA+AGG + chr5_3:56246189-56246208 None:intergenic 35.0%
AGATCCATATTTGCATGTTC+CGG + chr5_3:56246482-56246501 None:intergenic 35.0%
GTTTGTGCTATCCTTTCTTT+AGG + chr5_3:56246523-56246542 None:intergenic 35.0%
ATCTATGGAGTATGCAAGTT+TGG - chr5_3:56246895-56246914 Msa0819610:intron 35.0%
GGATGATCAAATTTGCATGT+TGG + chr5_3:56246922-56246941 None:intergenic 35.0%
CAAATTTGATCATCCAGTTG+TGG - chr5_3:56246927-56246946 Msa0819610:intron 35.0%
!! AAAGCCTTCTTGGATTAGTA+AGG + chr5_3:56247011-56247030 None:intergenic 35.0%
TTGTCAGTTGATTGTTTCGA+TGG + chr5_3:56247060-56247079 None:intergenic 35.0%
TGCAGAATTGCAGATCAAAA+GGG + chr5_3:56247272-56247291 None:intergenic 35.0%
! TTTTGATCTGCAATTCTGCA+GGG - chr5_3:56247272-56247291 Msa0819610:intron 35.0%
!!! GATAGAGGGCATTTTTTTTG+TGG - chr5_3:56247343-56247362 Msa0819610:five_prime_UTR 35.0%
!! AATGCTGGTTCTAATCCATC+TGG - chr5_3:56243324-56243343 Msa0819610:exon 40.0%
CCTTCAATGTTATCACCAGA+TGG + chr5_3:56243342-56243361 None:intergenic 40.0%
CCATCTGGTGATAACATTGA+AGG - chr5_3:56243339-56243358 Msa0819610:CDS 40.0%
ATTGTATTGGACTGTGAGTG+TGG - chr5_3:56243850-56243869 Msa0819610:intron 40.0%
TATTTGAGGACTGGAATGTG+TGG - chr5_3:56244064-56244083 Msa0819610:intron 40.0%
TGTTAGCAGGGTGATTATAG+CGG + chr5_3:56244105-56244124 None:intergenic 40.0%
AAGAACTTCCTGAGAGAGTT+GGG - chr5_3:56244332-56244351 Msa0819610:intron 40.0%
GTGCTTCATGAAATCGAATG+TGG - chr5_3:56244429-56244448 Msa0819610:intron 40.0%
CATGAAATCGAATGTGGATG+TGG - chr5_3:56244435-56244454 Msa0819610:intron 40.0%
CATGAGCACAAAATGTCTGT+AGG - chr5_3:56244668-56244687 Msa0819610:CDS 40.0%
ACCAAGACTATGCTCATACA+AGG - chr5_3:56244692-56244711 Msa0819610:CDS 40.0%
CCAAGACTATGCTCATACAA+GGG - chr5_3:56244693-56244712 Msa0819610:CDS 40.0%
CTAACAATGAACATGTCCCT+AGG + chr5_3:56244739-56244758 None:intergenic 40.0%
CTGATGTAAGTCGTAGGATA+CGG - chr5_3:56244786-56244805 Msa0819610:CDS 40.0%
TCCAGTGCAATGAAACTTGT+TGG - chr5_3:56245094-56245113 Msa0819610:intron 40.0%
ACCAACAAGTTTCATTGCAC+TGG + chr5_3:56245098-56245117 None:intergenic 40.0%
!! AGTGCAATGAAACTTGTTGG+TGG - chr5_3:56245097-56245116 Msa0819610:intron 40.0%
AAGTTATCCTGGAGAGCTTA+TGG - chr5_3:56245237-56245256 Msa0819610:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr5_3:56245247-56245266 None:intergenic 40.0%
TAGCTTATGGAAACGGCTTA+TGG + chr5_3:56245292-56245311 None:intergenic 40.0%
CCCGTTGTCTTCAATACTTT+AGG - chr5_3:56245447-56245466 Msa0819610:intron 40.0%
TGTCCCTATTACATGAGAAC+TGG - chr5_3:56245610-56245629 Msa0819610:intron 40.0%
GTCCCTATTACATGAGAACT+GGG - chr5_3:56245611-56245630 Msa0819610:intron 40.0%
GACCCAGTTCTCATGTAATA+GGG + chr5_3:56245616-56245635 None:intergenic 40.0%
AGACCCAGTTCTCATGTAAT+AGG + chr5_3:56245617-56245636 None:intergenic 40.0%
CAAGTTTCATCATCCACAAC+AGG - chr5_3:56245657-56245676 Msa0819610:intron 40.0%
GATGAAGTAACAGTTGTGGA+GGG + chr5_3:56245724-56245743 None:intergenic 40.0%
TGATGAAGTAACAGTTGTGG+AGG + chr5_3:56245725-56245744 None:intergenic 40.0%
! TCCACAACTGTTACTTCATC+AGG - chr5_3:56245724-56245743 Msa0819610:intron 40.0%
ACCTGATGAAGTAACAGTTG+TGG + chr5_3:56245728-56245747 None:intergenic 40.0%
! TCATCAGGTTTTCCATATGC+TGG - chr5_3:56245739-56245758 Msa0819610:intron 40.0%
! AGGAGGCACATAAGATTGAA+TGG + chr5_3:56245815-56245834 None:intergenic 40.0%
TGTGAAGAAGGCAAAAAAGG+AGG + chr5_3:56245832-56245851 None:intergenic 40.0%
CCTTGTGAAGAAGGCAAAAA+AGG + chr5_3:56245835-56245854 None:intergenic 40.0%
!!! CCTTTTTTGCCTTCTTCACA+AGG - chr5_3:56245832-56245851 Msa0819610:intron 40.0%
!!! AGACAAGACTGGTTCTGTTT+TGG + chr5_3:56246146-56246165 None:intergenic 40.0%
!! GAACCAGTCTTGTCTTGTTT+AGG - chr5_3:56246151-56246170 Msa0819610:CDS 40.0%
!!! TCCTAGCCTTTTAGGATGTT+TGG - chr5_3:56246180-56246199 Msa0819610:CDS 40.0%
TCGTAACTACATGCATTCAG+TGG - chr5_3:56246225-56246244 Msa0819610:intron 40.0%
TACATGCATTCAGTGGTTAC+TGG - chr5_3:56246232-56246251 Msa0819610:intron 40.0%
! TAAAACCAGTAGGCATTGCA+GGG + chr5_3:56246336-56246355 None:intergenic 40.0%
! ATAAAACCAGTAGGCATTGC+AGG + chr5_3:56246337-56246356 None:intergenic 40.0%
!!! GCAATGCCTACTGGTTTTAT+TGG - chr5_3:56246337-56246356 Msa0819610:intron 40.0%
TGTCTACGACTACATGAATC+CGG - chr5_3:56246369-56246388 Msa0819610:intron 40.0%
TATTTACAGTCTGGTTGCTC+AGG + chr5_3:56246448-56246467 None:intergenic 40.0%
AATGCACTTACAGGTCTCAT+AGG + chr5_3:56246571-56246590 None:intergenic 40.0%
AATACTGATAGAGTAGGCGA+GGG + chr5_3:56246976-56246995 None:intergenic 40.0%
GCATCGAATACTGATAGAGT+AGG + chr5_3:56246982-56247001 None:intergenic 40.0%
CTCTCCTTACTAATCCAAGA+AGG - chr5_3:56247004-56247023 Msa0819610:intron 40.0%
TTGTTTCGATGGAGATGTCT+CGG + chr5_3:56247049-56247068 None:intergenic 40.0%
AGATCAAAAGGGGGAATAGA+TGG + chr5_3:56247261-56247280 None:intergenic 40.0%
CAGAATTGCAGATCAAAAGG+GGG + chr5_3:56247270-56247289 None:intergenic 40.0%
GCAGAATTGCAGATCAAAAG+GGG + chr5_3:56247271-56247290 None:intergenic 40.0%
CTGCAGAATTGCAGATCAAA+AGG + chr5_3:56247273-56247292 None:intergenic 40.0%
! CTTTTGATCTGCAATTCTGC+AGG - chr5_3:56247271-56247290 Msa0819610:intron 40.0%
!! GGGTTGGATAGTTTGTTCAA+TGG - chr5_3:56247292-56247311 Msa0819610:intron 40.0%
TTGTGACAATCATGAGCTTG+TGG - chr5_3:56247318-56247337 Msa0819610:intron 40.0%
TGTGACAATCATGAGCTTGT+GGG - chr5_3:56247319-56247338 Msa0819610:intron 40.0%
! TCTTTTCCCCTTTCATCTCT+TGG - chr5_3:56247398-56247417 Msa0819610:five_prime_UTR 40.0%
! CTTTTCCCCTTTCATCTCTT+GGG - chr5_3:56247399-56247418 Msa0819610:five_prime_UTR 40.0%
! TTTTCCCCTTTCATCTCTTG+GGG - chr5_3:56247400-56247419 Msa0819610:five_prime_UTR 40.0%
ATTGACCCCAAGAGATGAAA+GGG + chr5_3:56247408-56247427 None:intergenic 40.0%
AATTGACCCCAAGAGATGAA+AGG + chr5_3:56247409-56247428 None:intergenic 40.0%
TTCATCTCTTGGGGTCAATT+TGG - chr5_3:56247409-56247428 Msa0819610:five_prime_UTR 40.0%
!! AATGCTGGTTCTAATCCATC+TGG - chr5_3:56243324-56243343 Msa0819610:exon 40.0%
CCTTCAATGTTATCACCAGA+TGG + chr5_3:56243342-56243361 None:intergenic 40.0%
CCATCTGGTGATAACATTGA+AGG - chr5_3:56243339-56243358 Msa0819610:CDS 40.0%
ATTGTATTGGACTGTGAGTG+TGG - chr5_3:56243850-56243869 Msa0819610:intron 40.0%
TATTTGAGGACTGGAATGTG+TGG - chr5_3:56244064-56244083 Msa0819610:intron 40.0%
TGTTAGCAGGGTGATTATAG+CGG + chr5_3:56244105-56244124 None:intergenic 40.0%
AAGAACTTCCTGAGAGAGTT+GGG - chr5_3:56244332-56244351 Msa0819610:intron 40.0%
GTGCTTCATGAAATCGAATG+TGG - chr5_3:56244429-56244448 Msa0819610:intron 40.0%
CATGAAATCGAATGTGGATG+TGG - chr5_3:56244435-56244454 Msa0819610:intron 40.0%
CATGAGCACAAAATGTCTGT+AGG - chr5_3:56244668-56244687 Msa0819610:CDS 40.0%
ACCAAGACTATGCTCATACA+AGG - chr5_3:56244692-56244711 Msa0819610:CDS 40.0%
CCAAGACTATGCTCATACAA+GGG - chr5_3:56244693-56244712 Msa0819610:CDS 40.0%
CTAACAATGAACATGTCCCT+AGG + chr5_3:56244739-56244758 None:intergenic 40.0%
CTGATGTAAGTCGTAGGATA+CGG - chr5_3:56244786-56244805 Msa0819610:CDS 40.0%
TCCAGTGCAATGAAACTTGT+TGG - chr5_3:56245094-56245113 Msa0819610:intron 40.0%
ACCAACAAGTTTCATTGCAC+TGG + chr5_3:56245098-56245117 None:intergenic 40.0%
!! AGTGCAATGAAACTTGTTGG+TGG - chr5_3:56245097-56245116 Msa0819610:intron 40.0%
AAGTTATCCTGGAGAGCTTA+TGG - chr5_3:56245237-56245256 Msa0819610:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr5_3:56245247-56245266 None:intergenic 40.0%
TAGCTTATGGAAACGGCTTA+TGG + chr5_3:56245292-56245311 None:intergenic 40.0%
CCCGTTGTCTTCAATACTTT+AGG - chr5_3:56245447-56245466 Msa0819610:intron 40.0%
TGTCCCTATTACATGAGAAC+TGG - chr5_3:56245610-56245629 Msa0819610:intron 40.0%
GTCCCTATTACATGAGAACT+GGG - chr5_3:56245611-56245630 Msa0819610:intron 40.0%
GACCCAGTTCTCATGTAATA+GGG + chr5_3:56245616-56245635 None:intergenic 40.0%
AGACCCAGTTCTCATGTAAT+AGG + chr5_3:56245617-56245636 None:intergenic 40.0%
CAAGTTTCATCATCCACAAC+AGG - chr5_3:56245657-56245676 Msa0819610:intron 40.0%
GATGAAGTAACAGTTGTGGA+GGG + chr5_3:56245724-56245743 None:intergenic 40.0%
TGATGAAGTAACAGTTGTGG+AGG + chr5_3:56245725-56245744 None:intergenic 40.0%
! TCCACAACTGTTACTTCATC+AGG - chr5_3:56245724-56245743 Msa0819610:intron 40.0%
ACCTGATGAAGTAACAGTTG+TGG + chr5_3:56245728-56245747 None:intergenic 40.0%
! TCATCAGGTTTTCCATATGC+TGG - chr5_3:56245739-56245758 Msa0819610:intron 40.0%
! AGGAGGCACATAAGATTGAA+TGG + chr5_3:56245815-56245834 None:intergenic 40.0%
TGTGAAGAAGGCAAAAAAGG+AGG + chr5_3:56245832-56245851 None:intergenic 40.0%
CCTTGTGAAGAAGGCAAAAA+AGG + chr5_3:56245835-56245854 None:intergenic 40.0%
!!! CCTTTTTTGCCTTCTTCACA+AGG - chr5_3:56245832-56245851 Msa0819610:intron 40.0%
!!! AGACAAGACTGGTTCTGTTT+TGG + chr5_3:56246146-56246165 None:intergenic 40.0%
!! GAACCAGTCTTGTCTTGTTT+AGG - chr5_3:56246151-56246170 Msa0819610:CDS 40.0%
!!! TCCTAGCCTTTTAGGATGTT+TGG - chr5_3:56246180-56246199 Msa0819610:CDS 40.0%
TCGTAACTACATGCATTCAG+TGG - chr5_3:56246225-56246244 Msa0819610:intron 40.0%
TACATGCATTCAGTGGTTAC+TGG - chr5_3:56246232-56246251 Msa0819610:intron 40.0%
! TAAAACCAGTAGGCATTGCA+GGG + chr5_3:56246336-56246355 None:intergenic 40.0%
! ATAAAACCAGTAGGCATTGC+AGG + chr5_3:56246337-56246356 None:intergenic 40.0%
!!! GCAATGCCTACTGGTTTTAT+TGG - chr5_3:56246337-56246356 Msa0819610:intron 40.0%
TGTCTACGACTACATGAATC+CGG - chr5_3:56246369-56246388 Msa0819610:intron 40.0%
TATTTACAGTCTGGTTGCTC+AGG + chr5_3:56246448-56246467 None:intergenic 40.0%
AATGCACTTACAGGTCTCAT+AGG + chr5_3:56246571-56246590 None:intergenic 40.0%
AATACTGATAGAGTAGGCGA+GGG + chr5_3:56246976-56246995 None:intergenic 40.0%
GCATCGAATACTGATAGAGT+AGG + chr5_3:56246982-56247001 None:intergenic 40.0%
CTCTCCTTACTAATCCAAGA+AGG - chr5_3:56247004-56247023 Msa0819610:intron 40.0%
TTGTTTCGATGGAGATGTCT+CGG + chr5_3:56247049-56247068 None:intergenic 40.0%
AGATCAAAAGGGGGAATAGA+TGG + chr5_3:56247261-56247280 None:intergenic 40.0%
CAGAATTGCAGATCAAAAGG+GGG + chr5_3:56247270-56247289 None:intergenic 40.0%
GCAGAATTGCAGATCAAAAG+GGG + chr5_3:56247271-56247290 None:intergenic 40.0%
CTGCAGAATTGCAGATCAAA+AGG + chr5_3:56247273-56247292 None:intergenic 40.0%
! CTTTTGATCTGCAATTCTGC+AGG - chr5_3:56247271-56247290 Msa0819610:intron 40.0%
!! GGGTTGGATAGTTTGTTCAA+TGG - chr5_3:56247292-56247311 Msa0819610:intron 40.0%
TTGTGACAATCATGAGCTTG+TGG - chr5_3:56247318-56247337 Msa0819610:intron 40.0%
TGTGACAATCATGAGCTTGT+GGG - chr5_3:56247319-56247338 Msa0819610:intron 40.0%
! TCTTTTCCCCTTTCATCTCT+TGG - chr5_3:56247398-56247417 Msa0819610:five_prime_UTR 40.0%
! CTTTTCCCCTTTCATCTCTT+GGG - chr5_3:56247399-56247418 Msa0819610:five_prime_UTR 40.0%
! TTTTCCCCTTTCATCTCTTG+GGG - chr5_3:56247400-56247419 Msa0819610:five_prime_UTR 40.0%
ATTGACCCCAAGAGATGAAA+GGG + chr5_3:56247408-56247427 None:intergenic 40.0%
AATTGACCCCAAGAGATGAA+AGG + chr5_3:56247409-56247428 None:intergenic 40.0%
TTCATCTCTTGGGGTCAATT+TGG - chr5_3:56247409-56247428 Msa0819610:five_prime_UTR 40.0%
GCCTCAATCAATGCCTTATC+CGG - chr5_3:56244012-56244031 Msa0819610:intron 45.0%
!! TCCGGATAAGGCATTGATTG+AGG + chr5_3:56244016-56244035 None:intergenic 45.0%
AGGACTGGAATGTGTGGTTA+CGG - chr5_3:56244070-56244089 Msa0819610:intron 45.0%
GAAGAACTTCCTGAGAGAGT+TGG - chr5_3:56244331-56244350 Msa0819610:intron 45.0%
!! TGAAGCACCGTTCAAAACGA+GGG + chr5_3:56244417-56244436 None:intergenic 45.0%
!! ATGAAGCACCGTTCAAAACG+AGG + chr5_3:56244418-56244437 None:intergenic 45.0%
GAAACTAAGACTTCTGTCCG+AGG + chr5_3:56244552-56244571 None:intergenic 45.0%
CCCTTGTATGAGCATAGTCT+TGG + chr5_3:56244696-56244715 None:intergenic 45.0%
AAGTCGTAGGATACGGAATG+AGG - chr5_3:56244793-56244812 Msa0819610:CDS 45.0%
! AGACGATTTTCCACATTGGC+AGG + chr5_3:56244840-56244859 None:intergenic 45.0%
GATGTACAAACCTGACGCAT+GGG + chr5_3:56245477-56245496 None:intergenic 45.0%
AGAACTGGGTCTTGCAAGTT+TGG - chr5_3:56245625-56245644 Msa0819610:intron 45.0%
AAGTAACAGTTGTGGAGGGA+GGG + chr5_3:56245720-56245739 None:intergenic 45.0%
! TCAGGTTTTCCATATGCTGG+TGG - chr5_3:56245742-56245761 Msa0819610:intron 45.0%
! CAGGTTTTCCATATGCTGGT+GGG - chr5_3:56245743-56245762 Msa0819610:intron 45.0%
GGCATAATGCCTTGTGAAGA+AGG + chr5_3:56245844-56245863 None:intergenic 45.0%
!! ATTTGAGCGCCGAATGTGAT+TGG + chr5_3:56246111-56246130 None:intergenic 45.0%
GCCAAACATCCTAAAAGGCT+AGG + chr5_3:56246184-56246203 None:intergenic 45.0%
ATTAACCCTGCAATGCCTAC+TGG - chr5_3:56246328-56246347 Msa0819610:intron 45.0%
! AGCACCGGAACATGCAAATA+TGG - chr5_3:56246475-56246494 Msa0819610:CDS 45.0%
AGTTCCACCACCCTAAAGAA+AGG - chr5_3:56246509-56246528 Msa0819610:CDS 45.0%
!! CTATCCTTTCTTTAGGGTGG+TGG + chr5_3:56246516-56246535 None:intergenic 45.0%
! GTGCTATCCTTTCTTTAGGG+TGG + chr5_3:56246519-56246538 None:intergenic 45.0%
! TTCCTATGTTGGTTGTCTGC+AGG - chr5_3:56246846-56246865 Msa0819610:intron 45.0%
! TCCTATGTTGGTTGTCTGCA+GGG - chr5_3:56246847-56246866 Msa0819610:intron 45.0%
! TTCTGAGAGATAGCCACAAC+TGG + chr5_3:56246943-56246962 None:intergenic 45.0%
GTGGCTATCTCTCAGAACTA+CGG - chr5_3:56246946-56246965 Msa0819610:intron 45.0%
GAATACTGATAGAGTAGGCG+AGG + chr5_3:56246977-56246996 None:intergenic 45.0%
TGGACAGTTGAAAGCCTTCT+TGG + chr5_3:56247021-56247040 None:intergenic 45.0%
ACCTTTGTCCGAGTCTTTAC+AGG - chr5_3:56247155-56247174 Msa0819610:intron 45.0%
TCCTGTAAAGACTCGGACAA+AGG + chr5_3:56247159-56247178 None:intergenic 45.0%
GTGACAATCATGAGCTTGTG+GGG - chr5_3:56247320-56247339 Msa0819610:intron 45.0%
TGACAATCATGAGCTTGTGG+GGG - chr5_3:56247321-56247340 Msa0819610:intron 45.0%
TTGACCCCAAGAGATGAAAG+GGG + chr5_3:56247407-56247426 None:intergenic 45.0%
GCCTCAATCAATGCCTTATC+CGG - chr5_3:56244012-56244031 Msa0819610:intron 45.0%
!! TCCGGATAAGGCATTGATTG+AGG + chr5_3:56244016-56244035 None:intergenic 45.0%
AGGACTGGAATGTGTGGTTA+CGG - chr5_3:56244070-56244089 Msa0819610:intron 45.0%
GAAGAACTTCCTGAGAGAGT+TGG - chr5_3:56244331-56244350 Msa0819610:intron 45.0%
!! TGAAGCACCGTTCAAAACGA+GGG + chr5_3:56244417-56244436 None:intergenic 45.0%
!! ATGAAGCACCGTTCAAAACG+AGG + chr5_3:56244418-56244437 None:intergenic 45.0%
GAAACTAAGACTTCTGTCCG+AGG + chr5_3:56244552-56244571 None:intergenic 45.0%
CCCTTGTATGAGCATAGTCT+TGG + chr5_3:56244696-56244715 None:intergenic 45.0%
AAGTCGTAGGATACGGAATG+AGG - chr5_3:56244793-56244812 Msa0819610:CDS 45.0%
! AGACGATTTTCCACATTGGC+AGG + chr5_3:56244840-56244859 None:intergenic 45.0%
GATGTACAAACCTGACGCAT+GGG + chr5_3:56245477-56245496 None:intergenic 45.0%
AGAACTGGGTCTTGCAAGTT+TGG - chr5_3:56245625-56245644 Msa0819610:intron 45.0%
AAGTAACAGTTGTGGAGGGA+GGG + chr5_3:56245720-56245739 None:intergenic 45.0%
! TCAGGTTTTCCATATGCTGG+TGG - chr5_3:56245742-56245761 Msa0819610:intron 45.0%
! CAGGTTTTCCATATGCTGGT+GGG - chr5_3:56245743-56245762 Msa0819610:intron 45.0%
GGCATAATGCCTTGTGAAGA+AGG + chr5_3:56245844-56245863 None:intergenic 45.0%
!! ATTTGAGCGCCGAATGTGAT+TGG + chr5_3:56246111-56246130 None:intergenic 45.0%
GCCAAACATCCTAAAAGGCT+AGG + chr5_3:56246184-56246203 None:intergenic 45.0%
ATTAACCCTGCAATGCCTAC+TGG - chr5_3:56246328-56246347 Msa0819610:intron 45.0%
! AGCACCGGAACATGCAAATA+TGG - chr5_3:56246475-56246494 Msa0819610:CDS 45.0%
AGTTCCACCACCCTAAAGAA+AGG - chr5_3:56246509-56246528 Msa0819610:CDS 45.0%
!! CTATCCTTTCTTTAGGGTGG+TGG + chr5_3:56246516-56246535 None:intergenic 45.0%
! GTGCTATCCTTTCTTTAGGG+TGG + chr5_3:56246519-56246538 None:intergenic 45.0%
! TTCCTATGTTGGTTGTCTGC+AGG - chr5_3:56246846-56246865 Msa0819610:intron 45.0%
! TCCTATGTTGGTTGTCTGCA+GGG - chr5_3:56246847-56246866 Msa0819610:intron 45.0%
! TTCTGAGAGATAGCCACAAC+TGG + chr5_3:56246943-56246962 None:intergenic 45.0%
GTGGCTATCTCTCAGAACTA+CGG - chr5_3:56246946-56246965 Msa0819610:intron 45.0%
GAATACTGATAGAGTAGGCG+AGG + chr5_3:56246977-56246996 None:intergenic 45.0%
TGGACAGTTGAAAGCCTTCT+TGG + chr5_3:56247021-56247040 None:intergenic 45.0%
ACCTTTGTCCGAGTCTTTAC+AGG - chr5_3:56247155-56247174 Msa0819610:intron 45.0%
TCCTGTAAAGACTCGGACAA+AGG + chr5_3:56247159-56247178 None:intergenic 45.0%
GTGACAATCATGAGCTTGTG+GGG - chr5_3:56247320-56247339 Msa0819610:intron 45.0%
TGACAATCATGAGCTTGTGG+GGG - chr5_3:56247321-56247340 Msa0819610:intron 45.0%
TTGACCCCAAGAGATGAAAG+GGG + chr5_3:56247407-56247426 None:intergenic 45.0%
!!! ATTTATATTTTAATTTTCAT+TGG - chr5_3:56243135-56243154 Msa0819610:three_prime_UTR 5.0%
!!! ATTTATATTTTAATTTTCAT+TGG - chr5_3:56243135-56243154 Msa0819610:three_prime_UTR 5.0%
TATACGCAGTCAGGTTCACC+AGG + chr5_3:56244043-56244062 None:intergenic 50.0%
GGACTGGAATGTGTGGTTAC+GGG - chr5_3:56244071-56244090 Msa0819610:intron 50.0%
AGTTGGGCAACCTGATTGTG+AGG - chr5_3:56244348-56244367 Msa0819610:intron 50.0%
CATCATCCCAAAGACAGGAG+AGG - chr5_3:56245417-56245436 Msa0819610:intron 50.0%
TTTAGGTCTTCCCATGCGTC+AGG - chr5_3:56245464-56245483 Msa0819610:intron 50.0%
GGATGTACAAACCTGACGCA+TGG + chr5_3:56245478-56245497 None:intergenic 50.0%
CACTGGATAAGCTCCTCCAA+AGG + chr5_3:56245689-56245708 None:intergenic 50.0%
! CTTTGGAGGAGCTTATCCAG+TGG - chr5_3:56245687-56245706 Msa0819610:intron 50.0%
AGTAACAGTTGTGGAGGGAG+GGG + chr5_3:56245719-56245738 None:intergenic 50.0%
GAAGTAACAGTTGTGGAGGG+AGG + chr5_3:56245721-56245740 None:intergenic 50.0%
!! ATTCTCGGCATTGACCATGC+AGG + chr5_3:56245772-56245791 None:intergenic 50.0%
CTACGACTACATGAATCCGG+CGG - chr5_3:56246372-56246391 Msa0819610:intron 50.0%
TACGACTACATGAATCCGGC+GGG - chr5_3:56246373-56246392 Msa0819610:intron 50.0%
! AGAGACACTTTCTGGTGGAC+AGG - chr5_3:56246396-56246415 Msa0819610:CDS 50.0%
TCTGGTTGCTCAGGTCTATC+TGG + chr5_3:56246439-56246458 None:intergenic 50.0%
GGTCTCATAGGAAGACCAAG+TGG + chr5_3:56246559-56246578 None:intergenic 50.0%
TCCCTGCAGACAACCAACAT+AGG + chr5_3:56246851-56246870 None:intergenic 50.0%
ATGGAGATGTCTCGGTTGGT+TGG + chr5_3:56247041-56247060 None:intergenic 50.0%
TTCGATGGAGATGTCTCGGT+TGG + chr5_3:56247045-56247064 None:intergenic 50.0%
GATCTGCAATTCTGCAGGGT+TGG - chr5_3:56247276-56247295 Msa0819610:intron 50.0%
ATGAGCTTGTGGGGGATAGA+GGG - chr5_3:56247329-56247348 Msa0819610:intron 50.0%
TATACGCAGTCAGGTTCACC+AGG + chr5_3:56244043-56244062 None:intergenic 50.0%
GGACTGGAATGTGTGGTTAC+GGG - chr5_3:56244071-56244090 Msa0819610:intron 50.0%
AGTTGGGCAACCTGATTGTG+AGG - chr5_3:56244348-56244367 Msa0819610:intron 50.0%
CATCATCCCAAAGACAGGAG+AGG - chr5_3:56245417-56245436 Msa0819610:intron 50.0%
TTTAGGTCTTCCCATGCGTC+AGG - chr5_3:56245464-56245483 Msa0819610:intron 50.0%
GGATGTACAAACCTGACGCA+TGG + chr5_3:56245478-56245497 None:intergenic 50.0%
CACTGGATAAGCTCCTCCAA+AGG + chr5_3:56245689-56245708 None:intergenic 50.0%
! CTTTGGAGGAGCTTATCCAG+TGG - chr5_3:56245687-56245706 Msa0819610:intron 50.0%
AGTAACAGTTGTGGAGGGAG+GGG + chr5_3:56245719-56245738 None:intergenic 50.0%
GAAGTAACAGTTGTGGAGGG+AGG + chr5_3:56245721-56245740 None:intergenic 50.0%
!! ATTCTCGGCATTGACCATGC+AGG + chr5_3:56245772-56245791 None:intergenic 50.0%
CTACGACTACATGAATCCGG+CGG - chr5_3:56246372-56246391 Msa0819610:intron 50.0%
TACGACTACATGAATCCGGC+GGG - chr5_3:56246373-56246392 Msa0819610:intron 50.0%
! AGAGACACTTTCTGGTGGAC+AGG - chr5_3:56246396-56246415 Msa0819610:CDS 50.0%
TCTGGTTGCTCAGGTCTATC+TGG + chr5_3:56246439-56246458 None:intergenic 50.0%
GGTCTCATAGGAAGACCAAG+TGG + chr5_3:56246559-56246578 None:intergenic 50.0%
TCCCTGCAGACAACCAACAT+AGG + chr5_3:56246851-56246870 None:intergenic 50.0%
ATGGAGATGTCTCGGTTGGT+TGG + chr5_3:56247041-56247060 None:intergenic 50.0%
TTCGATGGAGATGTCTCGGT+TGG + chr5_3:56247045-56247064 None:intergenic 50.0%
GATCTGCAATTCTGCAGGGT+TGG - chr5_3:56247276-56247295 Msa0819610:intron 50.0%
ATGAGCTTGTGGGGGATAGA+GGG - chr5_3:56247329-56247348 Msa0819610:intron 50.0%
ATGCCTTATCCGGATCGACC+TGG - chr5_3:56244022-56244041 Msa0819610:intron 55.0%
TCACCAGGTCGATCCGGATA+AGG + chr5_3:56244028-56244047 None:intergenic 55.0%
TCAGGTTCACCAGGTCGATC+CGG + chr5_3:56244034-56244053 None:intergenic 55.0%
! TCAGGTTGCCCAACTCTCTC+AGG + chr5_3:56244343-56244362 None:intergenic 55.0%
GCAGCACCTCTCCTGTCTTT+GGG + chr5_3:56245426-56245445 None:intergenic 55.0%
TGCAGCACCTCTCCTGTCTT+TGG + chr5_3:56245427-56245446 None:intergenic 55.0%
CCAAAGGAAGCTGCCTGTTG+TGG + chr5_3:56245673-56245692 None:intergenic 55.0%
CCACAACAGGCAGCTTCCTT+TGG - chr5_3:56245670-56245689 Msa0819610:intron 55.0%
CAACAGGCAGCTTCCTTTGG+AGG - chr5_3:56245673-56245692 Msa0819610:intron 55.0%
TGGAGGAGCTTATCCAGTGG+CGG - chr5_3:56245690-56245709 Msa0819610:intron 55.0%
GCAGGAAACCCACCAGCATA+TGG + chr5_3:56245754-56245773 None:intergenic 55.0%
!! ATGCTGGTGGGTTTCCTGCA+TGG - chr5_3:56245755-56245774 Msa0819610:intron 55.0%
GCTGAGCTGGAGCAACTACA+TGG - chr5_3:56245867-56245886 Msa0819610:intron 55.0%
CATGAGCTTGTGGGGGATAG+AGG - chr5_3:56247328-56247347 Msa0819610:intron 55.0%
ATGCCTTATCCGGATCGACC+TGG - chr5_3:56244022-56244041 Msa0819610:intron 55.0%
TCACCAGGTCGATCCGGATA+AGG + chr5_3:56244028-56244047 None:intergenic 55.0%
TCAGGTTCACCAGGTCGATC+CGG + chr5_3:56244034-56244053 None:intergenic 55.0%
! TCAGGTTGCCCAACTCTCTC+AGG + chr5_3:56244343-56244362 None:intergenic 55.0%
GCAGCACCTCTCCTGTCTTT+GGG + chr5_3:56245426-56245445 None:intergenic 55.0%
TGCAGCACCTCTCCTGTCTT+TGG + chr5_3:56245427-56245446 None:intergenic 55.0%
CCAAAGGAAGCTGCCTGTTG+TGG + chr5_3:56245673-56245692 None:intergenic 55.0%
CCACAACAGGCAGCTTCCTT+TGG - chr5_3:56245670-56245689 Msa0819610:intron 55.0%
CAACAGGCAGCTTCCTTTGG+AGG - chr5_3:56245673-56245692 Msa0819610:intron 55.0%
TGGAGGAGCTTATCCAGTGG+CGG - chr5_3:56245690-56245709 Msa0819610:intron 55.0%
GCAGGAAACCCACCAGCATA+TGG + chr5_3:56245754-56245773 None:intergenic 55.0%
!! ATGCTGGTGGGTTTCCTGCA+TGG - chr5_3:56245755-56245774 Msa0819610:intron 55.0%
GCTGAGCTGGAGCAACTACA+TGG - chr5_3:56245867-56245886 Msa0819610:intron 55.0%
CATGAGCTTGTGGGGGATAG+AGG - chr5_3:56247328-56247347 Msa0819610:intron 55.0%
GCATTATGCCTGCGCTGAGC+TGG - chr5_3:56245854-56245873 Msa0819610:intron 60.0%
TAGTTGCTCCAGCTCAGCGC+AGG + chr5_3:56245865-56245884 None:intergenic 60.0%
!! CCAGAAAGTGTCTCTCCCGC+CGG + chr5_3:56246391-56246410 None:intergenic 60.0%
GCGGGAGAGACACTTTCTGG+TGG - chr5_3:56246391-56246410 Msa0819610:CDS 60.0%
GCATTATGCCTGCGCTGAGC+TGG - chr5_3:56245854-56245873 Msa0819610:intron 60.0%
TAGTTGCTCCAGCTCAGCGC+AGG + chr5_3:56245865-56245884 None:intergenic 60.0%
!! CCAGAAAGTGTCTCTCCCGC+CGG + chr5_3:56246391-56246410 None:intergenic 60.0%
GCGGGAGAGACACTTTCTGG+TGG - chr5_3:56246391-56246410 Msa0819610:CDS 60.0%
CCGGCGGGAGAGACACTTTC+TGG - chr5_3:56246388-56246407 Msa0819610:CDS 65.0%
CCGGCGGGAGAGACACTTTC+TGG - chr5_3:56246388-56246407 Msa0819610:CDS 65.0%
! GAGGGAGGGGACGCCGCCAC+TGG + chr5_3:56245706-56245725 None:intergenic 80.0%
! GAGGGAGGGGACGCCGCCAC+TGG + chr5_3:56245706-56245725 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 56242970 56247547 56242970 ID=Msa0819610;Name=Msa0819610
chr5_3 mRNA 56242970 56247547 56242970 ID=Msa0819610-mRNA-1;Parent=Msa0819610;Name=Msa0819610-mRNA-1;_AED=0.28;_eAED=0.28;_QI=215|0.66|0.85|1|0.66|0.85|7|365|329
chr5_3 exon 56242970 56243649 56242970 ID=Msa0819610-mRNA-1:exon:16999;Parent=Msa0819610-mRNA-1
chr5_3 exon 56244100 56244195 56244100 ID=Msa0819610-mRNA-1:exon:16998;Parent=Msa0819610-mRNA-1
chr5_3 exon 56244629 56244919 56244629 ID=Msa0819610-mRNA-1:exon:16997;Parent=Msa0819610-mRNA-1
chr5_3 exon 56246148 56246201 56246148 ID=Msa0819610-mRNA-1:exon:16996;Parent=Msa0819610-mRNA-1
chr5_3 exon 56246385 56246554 56246385 ID=Msa0819610-mRNA-1:exon:16995;Parent=Msa0819610-mRNA-1
chr5_3 exon 56247157 56247220 56247157 ID=Msa0819610-mRNA-1:exon:16994;Parent=Msa0819610-mRNA-1
chr5_3 exon 56247333 56247547 56247333 ID=Msa0819610-mRNA-1:exon:16993;Parent=Msa0819610-mRNA-1
chr5_3 five_prime_UTR 56247333 56247547 56247333 ID=Msa0819610-mRNA-1:five_prime_utr;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56247157 56247220 56247157 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56246385 56246554 56246385 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56246148 56246201 56246148 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56244629 56244919 56244629 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56244100 56244195 56244100 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 CDS 56243335 56243649 56243335 ID=Msa0819610-mRNA-1:cds;Parent=Msa0819610-mRNA-1
chr5_3 three_prime_UTR 56242970 56243334 56242970 ID=Msa0819610-mRNA-1:three_prime_utr;Parent=Msa0819610-mRNA-1
Gene Sequence

>Msa0819610

ATGCCAGAAAATAGACAAGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCTATTCGGCGTTTGAAAATCAATAGTACTCGAGACAGAGATGCTGTGCCTCAATCAATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCGTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGCCGCTATAATCACCCTGCTAACATTTCACCTGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTTGGGCAACCTGATTGTGAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGCAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAACAGGCAGCTTCCTTTGGAGGAGCTTATCCAGTGGCGGCGTCCCCTCCCTCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTGCCTCCTTTTTTGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAACCCTGCAATGCCTACTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGGAGAGACACTTTCTGGTGGACAGGGAAATGCTATATGCTCATATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTGGCTATCTCTCAGAACTACGGCTTGCCCTCGCCTACTCTATCAGTATTCGATGCATCTCTCCTTACTAATCCAAGAAGGCTTTCAACTGTCCAACCAACCGAGACATCTCCATCGAAACAATCAACTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACCGAAGATTCATCTAAACAAGCTGACAGTACATCAACTTCTCGCACACCTTTGTCCGAGTCTTTACAGGAATAA
Protein sequence

>Msa0819610

MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTTVTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMGSINPAMPTGFIGSNLVYDYMNPAGETLSGGQGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNYGLPSPTLSVFDASLLTNPRRLSTVQPTETSPSKQSTDKLQQSDTKAATEDSSKQADSTSTSRTPLSESLQE*