Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860290 | XP_003616933.3 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860290 | sp|Q7Y175|PUX5_ARATH | 55.981 | 418 | 149 | 11 | 31 | 419 | 9 | 420 | 2.99e-128 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860290 | A0A396HVH4 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0306110 | Msa0860290 | 0.869713 | 2.519286e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860290 | MtrunA17_Chr5g0439401 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Msa0860290 | MtrunA17_Chr2g0289211 | 64.120 | 301 | 96 | 7 | 126 | 419 | 7 | 302 | 3.58e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860290 | AT4G15410.1 | 55.981 | 418 | 149 | 11 | 31 | 419 | 9 | 420 | 3.04e-129 | 379 |
| Msa0860290 | AT4G04210.1 | 60.403 | 298 | 113 | 4 | 125 | 419 | 7 | 302 | 1.25e-110 | 327 |
| Msa0860290 | AT4G22150.1 | 59.386 | 293 | 108 | 5 | 132 | 419 | 15 | 301 | 2.63e-106 | 317 |
| Msa0860290 | AT3G21660.2 | 47.475 | 198 | 79 | 4 | 222 | 419 | 265 | 437 | 8.75e-49 | 172 |
| Msa0860290 | AT3G21660.2 | 33.333 | 186 | 89 | 6 | 105 | 290 | 62 | 212 | 6.43e-12 | 67.4 |
| Msa0860290 | AT3G21660.1 | 43.434 | 198 | 84 | 4 | 222 | 419 | 265 | 434 | 1.81e-40 | 149 |
| Msa0860290 | AT3G21660.1 | 33.333 | 186 | 89 | 6 | 105 | 290 | 62 | 212 | 6.26e-12 | 67.4 |
Find 128 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAATGGAAAACTAAAT+AGG | 0.198035 | 5_4:+58949826 | None:intergenic |
| ATCAGTTGGTTCAAGCTCTT+TGG | 0.246690 | 5_4:+58950411 | None:intergenic |
| CGTGGGGTTGGAAGAACTTT+AGG | 0.259691 | 5_4:-58950208 | Msa0860290:CDS |
| TTTGAATGGAAAACTAAATA+GGG | 0.295823 | 5_4:+58949827 | None:intergenic |
| TCCCAAACAACTTACTGATT+TGG | 0.297389 | 5_4:-58949921 | Msa0860290:CDS |
| CATAGTGATTTCAATTTGAA+TGG | 0.310575 | 5_4:+58949813 | None:intergenic |
| CTGTCAATGATGGTCCTTTA+CGG | 0.328650 | 5_4:-58951884 | Msa0860290:CDS |
| TTACACATGTGGTCACCTTT+TGG | 0.333647 | 5_4:-58951920 | Msa0860290:CDS |
| GAATCGCTTGATGAGGGTTT+CGG | 0.349947 | 5_4:+58954198 | None:intergenic |
| GTCCAAATCAGTAAGTTGTT+TGG | 0.365932 | 5_4:+58949919 | None:intergenic |
| GGAACCGCCAGATTGCTTTC+CGG | 0.374244 | 5_4:-58951981 | Msa0860290:CDS |
| AAAGAAAAGAGCTTCTTGTT+TGG | 0.382173 | 5_4:+58954134 | None:intergenic |
| TCAATCACCACCATGCAATC+AGG | 0.385554 | 5_4:-58950018 | Msa0860290:CDS |
| AAGTAGATCAATCAATGTTT+AGG | 0.391059 | 5_4:+58949784 | None:intergenic |
| TCAGTTGGTTCAAGCTCTTT+GGG | 0.394997 | 5_4:+58950412 | None:intergenic |
| TCCAAATCAGTAAGTTGTTT+GGG | 0.395118 | 5_4:+58949920 | None:intergenic |
| AGAGTAGCGGTGTCGTTTAG+AGG | 0.401868 | 5_4:+58954045 | None:intergenic |
| TTCACGAAAGCAATTCTGTA+TGG | 0.409401 | 5_4:+58949728 | None:intergenic |
| TGCCTCGCCGGAAAGCAATC+TGG | 0.411044 | 5_4:+58951974 | None:intergenic |
| TACCACCCCTGGTAGGATCT+TGG | 0.413499 | 5_4:+58952090 | None:intergenic |
| CTCCTGCTGAAAACTCTTCA+AGG | 0.416506 | 5_4:-58952019 | Msa0860290:CDS |
| GAATTTCACGGAATACTCAT+TGG | 0.417957 | 5_4:-58949757 | Msa0860290:three_prime_UTR |
| GTAGTAGGCAAAGTGGGATT+CGG | 0.455964 | 5_4:-58953870 | Msa0860290:CDS |
| CTGAAAACTCTTCAAGGTCT+AGG | 0.458449 | 5_4:-58952013 | Msa0860290:CDS |
| AGAAAAGCGGCTCTGGTAGT+AGG | 0.460070 | 5_4:-58953885 | Msa0860290:CDS |
| TACCAGCTTGCTCTATAGTC+TGG | 0.461193 | 5_4:+58949897 | None:intergenic |
| AGCAGATGGCACTGCCTCGC+CGG | 0.463954 | 5_4:+58951962 | None:intergenic |
| TGGTAATTTCTTGCCCCACC+AGG | 0.468820 | 5_4:+58949965 | None:intergenic |
| GCAGTATTGCGTGGCTTCAC+GGG | 0.469573 | 5_4:+58950235 | None:intergenic |
| TACCATCAGATAACCTTAGC+TGG | 0.471996 | 5_4:+58950059 | None:intergenic |
| AGCAGTATTGCGTGGCTTCA+CGG | 0.477508 | 5_4:+58950234 | None:intergenic |
| ACGTGAAGAAACAGAAAGAA+TGG | 0.478497 | 5_4:-58954232 | Msa0860290:CDS |
| AATTACCAACTGCAGACAAT+GGG | 0.481202 | 5_4:-58949950 | Msa0860290:CDS |
| ACTAAACCCATTGCTGGCGC+TGG | 0.481482 | 5_4:+58950112 | None:intergenic |
| GAATCATCGGGATGAAACTC+AGG | 0.481708 | 5_4:+58953982 | None:intergenic |
| CTTCGAGATCGAAGCTCATA+CGG | 0.482804 | 5_4:+58953919 | None:intergenic |
| CTTCGATCTCGAAGGTCGAT+TGG | 0.483202 | 5_4:-58953910 | Msa0860290:CDS |
| TGCTTGTCCAAGATCCTACC+AGG | 0.483934 | 5_4:-58952097 | Msa0860290:CDS |
| TCTACAACTAAACCCATTGC+TGG | 0.487368 | 5_4:+58950106 | None:intergenic |
| ACTGCTCCAGCGCCAGCAAT+GGG | 0.489106 | 5_4:-58950118 | Msa0860290:CDS |
| TTAGGTGACAGCAGTTCAAA+TGG | 0.492099 | 5_4:-58950190 | Msa0860290:CDS |
| ATTGGTAAGAAAAGCGGCTC+TGG | 0.495571 | 5_4:-58953892 | Msa0860290:CDS |
| TTGAATGGAAAACTAAATAG+GGG | 0.501687 | 5_4:+58949828 | None:intergenic |
| GGTTGAGACGGACAGAAGTT+CGG | 0.505855 | 5_4:+58950386 | None:intergenic |
| TGCGGTGGAATCGCTTGATG+AGG | 0.508482 | 5_4:+58954191 | None:intergenic |
| ACAGAAGTTCGGCGATCAGT+TGG | 0.512498 | 5_4:+58950397 | None:intergenic |
| TGTAACTGATTCTACTGGCT+GGG | 0.513304 | 5_4:+58951938 | None:intergenic |
| TACTGCTCCAGCGCCAGCAA+TGG | 0.515865 | 5_4:-58950119 | Msa0860290:CDS |
| AGCAGTAAGTGGGGAAGCAC+CGG | 0.520572 | 5_4:+58950135 | None:intergenic |
| GTGTAACTGATTCTACTGGC+TGG | 0.522415 | 5_4:+58951937 | None:intergenic |
| GCTGGCGCTGGAGCAGTAAG+TGG | 0.525015 | 5_4:+58950124 | None:intergenic |
| CCGTCTCAACCTCACAAGGC+GGG | 0.529508 | 5_4:-58950374 | Msa0860290:CDS |
| TGCGAAGGAGGAGAATCATC+GGG | 0.531443 | 5_4:+58953970 | None:intergenic |
| CGGTTCATCAGAATCAGAAT+CGG | 0.532241 | 5_4:+58953816 | None:intergenic |
| AAACTCAGGGGAAAGAGAAT+CGG | 0.532439 | 5_4:+58953996 | None:intergenic |
| TTCTGATTCTGATGAACCGC+AGG | 0.535431 | 5_4:-58953812 | Msa0860290:CDS |
| CACGCAATACTGCTTTCCGT+GGG | 0.535644 | 5_4:-58950225 | Msa0860290:CDS |
| AGAAAACCCATTCCTCCAAA+AGG | 0.536739 | 5_4:+58951905 | None:intergenic |
| TCTACTGGCTGGGGAGCAGA+TGG | 0.544488 | 5_4:+58951948 | None:intergenic |
| TTGCGAAGGAGGAGAATCAT+CGG | 0.546136 | 5_4:+58953969 | None:intergenic |
| TGTGACGGTGATTGCGAAGG+AGG | 0.549095 | 5_4:+58953958 | None:intergenic |
| GTTGTCTAAGAAAGATGAAA+CGG | 0.549818 | 5_4:+58954080 | None:intergenic |
| AATACTGCTTTCCGTGGGGT+TGG | 0.550672 | 5_4:-58950220 | Msa0860290:CDS |
| GCGGTGGAATCGCTTGATGA+GGG | 0.553705 | 5_4:+58954192 | None:intergenic |
| CGCCAGATTGCTTTCCGGCG+AGG | 0.554024 | 5_4:-58951976 | Msa0860290:CDS |
| CTTAGCTGGATTGAGGTCAC+TGG | 0.555623 | 5_4:+58950073 | None:intergenic |
| CAATCACCACCATGCAATCA+GGG | 0.555905 | 5_4:-58950017 | Msa0860290:CDS |
| CCCGCCTTGTGAGGTTGAGA+CGG | 0.558341 | 5_4:+58950374 | None:intergenic |
| GGACCTAGTCAAACTACTGC+CGG | 0.558354 | 5_4:-58950154 | Msa0860290:CDS |
| AGATAACCTTAGCTGGATTG+AGG | 0.560345 | 5_4:+58950066 | None:intergenic |
| GGATCTTCCGACCTCCGTAA+AGG | 0.566377 | 5_4:+58951870 | None:intergenic |
| ATCCACAGAATTACCACCCC+TGG | 0.567943 | 5_4:+58952079 | None:intergenic |
| CTGGCGCTGGAGCAGTAAGT+GGG | 0.569503 | 5_4:+58950125 | None:intergenic |
| ACATGTGTAACTGATTCTAC+TGG | 0.569920 | 5_4:+58951933 | None:intergenic |
| TGATGCATCAAGACCTGGTG+GGG | 0.572769 | 5_4:-58949978 | Msa0860290:CDS |
| AAGAGAATCGGAAGGTGAAA+CGG | 0.572938 | 5_4:+58954008 | None:intergenic |
| TGATGGTCCTTTACGGAGGT+CGG | 0.576642 | 5_4:-58951877 | Msa0860290:CDS |
| GAAAACCCATTGTCTGCAGT+TGG | 0.578693 | 5_4:+58949945 | None:intergenic |
| TTCATTGATGCATCAAGACC+TGG | 0.579125 | 5_4:-58949983 | Msa0860290:CDS |
| GAGTAGCGGTGTCGTTTAGA+GGG | 0.585153 | 5_4:+58954046 | None:intergenic |
| CCACGCAATACTGCTTTCCG+TGG | 0.590418 | 5_4:-58950226 | Msa0860290:CDS |
| CTGTCCGTCTCAACCTCACA+AGG | 0.592041 | 5_4:-58950378 | Msa0860290:CDS |
| GACTGTGACGGTGATTGCGA+AGG | 0.592144 | 5_4:+58953955 | None:intergenic |
| AAATTACCAACTGCAGACAA+TGG | 0.595134 | 5_4:-58949951 | Msa0860290:CDS |
| CTCGAATATCCCTGATTGCA+TGG | 0.595950 | 5_4:+58950008 | None:intergenic |
| GTTATCTGATGGTACACGAA+TGG | 0.596346 | 5_4:-58950050 | Msa0860290:CDS |
| AGCTCATACGGAGCACGTGA+CGG | 0.596713 | 5_4:+58953931 | None:intergenic |
| CAGTGACCTCAATCCAGCTA+AGG | 0.597831 | 5_4:-58950072 | Msa0860290:CDS |
| TACCAGGGGTGGTAATTCTG+TGG | 0.600555 | 5_4:-58952081 | Msa0860290:CDS |
| AAATCAGTAAGTTGTTTGGG+AGG | 0.610070 | 5_4:+58949923 | None:intergenic |
| TCAAATGGTGAAGCTGCTAG+TGG | 0.617236 | 5_4:-58950175 | Msa0860290:CDS |
| AATCATCGGGATGAAACTCA+GGG | 0.618053 | 5_4:+58953983 | None:intergenic |
| GAACCGCAGGAGTATTATGC+TGG | 0.618612 | 5_4:-58953799 | Msa0860290:CDS |
| GCTCTGGTAGTAGGCAAAGT+GGG | 0.620239 | 5_4:-58953876 | Msa0860290:CDS |
| GCACCGGCAGTAGTTTGACT+AGG | 0.626229 | 5_4:+58950151 | None:intergenic |
| GGTGTCGTTTAGAGGGATAG+TGG | 0.627335 | 5_4:+58954053 | None:intergenic |
| TTGATGCATCAAGACCTGGT+GGG | 0.628623 | 5_4:-58949979 | Msa0860290:CDS |
| GGCTCTGGTAGTAGGCAAAG+TGG | 0.629593 | 5_4:-58953877 | Msa0860290:CDS |
| GACCAGACTATAGAGCAAGC+TGG | 0.629775 | 5_4:-58949899 | Msa0860290:CDS |
| GCACGTGACGGCGACTGTGA+CGG | 0.630121 | 5_4:+58953943 | None:intergenic |
| ATCCAGCTAAGGTTATCTGA+TGG | 0.632636 | 5_4:-58950061 | Msa0860290:CDS |
| GTCCAAGATCCTACCAGGGG+TGG | 0.635356 | 5_4:-58952092 | Msa0860290:CDS |
| CTCGCCGGAAAGCAATCTGG+CGG | 0.637134 | 5_4:+58951977 | None:intergenic |
| TCCGTCTCAACCTCACAAGG+CGG | 0.638683 | 5_4:-58950375 | Msa0860290:CDS |
| CCGCAGGAGTATTATGCTGG+TGG | 0.640112 | 5_4:-58953796 | Msa0860290:CDS |
| ATTATGCTGGTGGTCAGAAG+AGG | 0.640404 | 5_4:-58953786 | Msa0860290:intron |
| CTAAAGTTCTTCCAACCCCA+CGG | 0.643931 | 5_4:+58950209 | None:intergenic |
| AGGTCGATTGGTAAGAAAAG+CGG | 0.647196 | 5_4:-58953898 | Msa0860290:CDS |
| GAATGAGTTGATTAGTGCGG+TGG | 0.648943 | 5_4:+58954176 | None:intergenic |
| GTAACTGATTCTACTGGCTG+GGG | 0.650058 | 5_4:+58951939 | None:intergenic |
| ATTGATGCATCAAGACCTGG+TGG | 0.651831 | 5_4:-58949980 | Msa0860290:CDS |
| TGAATGGAAAACTAAATAGG+GGG | 0.653528 | 5_4:+58949829 | None:intergenic |
| ACAGAATTACCACCCCTGGT+AGG | 0.657209 | 5_4:+58952083 | None:intergenic |
| CGTATGAGCTTCGATCTCGA+AGG | 0.657519 | 5_4:-58953918 | Msa0860290:CDS |
| ACGCAATACTGCTTTCCGTG+GGG | 0.663360 | 5_4:-58950224 | Msa0860290:CDS |
| CCACGGAAAGCAGTATTGCG+TGG | 0.679106 | 5_4:+58950226 | None:intergenic |
| TGGCGCTGGAGCAGTAAGTG+GGG | 0.688489 | 5_4:+58950126 | None:intergenic |
| CCACCAGCATAATACTCCTG+CGG | 0.690867 | 5_4:+58953796 | None:intergenic |
| TCAATGATGGTCCTTTACGG+AGG | 0.691556 | 5_4:-58951881 | Msa0860290:CDS |
| GCTTGTCCAAGATCCTACCA+GGG | 0.692331 | 5_4:-58952096 | Msa0860290:CDS |
| AGTAGAATCAGTTACACATG+TGG | 0.699388 | 5_4:-58951931 | Msa0860290:CDS |
| GCAAAATGCAGAATTCCTTG+AGG | 0.705055 | 5_4:-58951847 | Msa0860290:intron |
| CTTGTCCAAGATCCTACCAG+GGG | 0.706116 | 5_4:-58952095 | Msa0860290:CDS |
| TCAGGGGAAAGAGAATCGGA+AGG | 0.707018 | 5_4:+58954000 | None:intergenic |
| AAGGCGGGATGAAAACTACC+CGG | 0.710643 | 5_4:-58950359 | Msa0860290:intron |
| GATGAATGAGTTGATTAGTG+CGG | 0.723819 | 5_4:+58954173 | None:intergenic |
| ATCATCGGGATGAAACTCAG+GGG | 0.744127 | 5_4:+58953984 | None:intergenic |
| GAATATCCCTGATTGCATGG+TGG | 0.750491 | 5_4:+58950011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGCAAATAAATAAATTTTT+AGG | - | chr5_4:58950586-58950605 | Msa0860290:intron | 10.0% |
| !!! | TTTAAAAAAAAAAGAGATTT+TGG | - | chr5_4:58950939-58950958 | Msa0860290:intron | 10.0% |
| !!! | AAAATGATTTTTTTAACAAA+AGG | - | chr5_4:58950986-58951005 | Msa0860290:intron | 10.0% |
| !! | TTGTTAAAATTTACAAAATA+TGG | + | chr5_4:58952178-58952197 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAGGTAAATATT+TGG | + | chr5_4:58952937-58952956 | None:intergenic | 10.0% |
| !!! | TTTAAAGAATTTAAAATTCT+AGG | + | chr5_4:58953170-58953189 | None:intergenic | 10.0% |
| !! | TAATGATTAATTGTGATATT+AGG | - | chr5_4:58950264-58950283 | Msa0860290:intron | 15.0% |
| !!! | TTTTTACGTCAAAAAAATTT+AGG | - | chr5_4:58950329-58950348 | Msa0860290:intron | 15.0% |
| !! | AAAGTGATTTATTAAACAAA+TGG | - | chr5_4:58950469-58950488 | Msa0860290:intron | 15.0% |
| !!! | TTTTTTTGATAGTAAACAAA+GGG | + | chr5_4:58950865-58950884 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGATAGTAAACAA+AGG | + | chr5_4:58950866-58950885 | None:intergenic | 15.0% |
| !!! | TCTAGTAAAATAATGATTTT+TGG | - | chr5_4:58951034-58951053 | Msa0860290:intron | 15.0% |
| !! | CTAAATTTAATTGAAAATGA+AGG | + | chr5_4:58952839-58952858 | None:intergenic | 15.0% |
| !! | CTATATTTAATTGAAAATGA+AGG | + | chr5_4:58953409-58953428 | None:intergenic | 15.0% |
| !!! | TTACTTATCTATTTTCTTTT+TGG | - | chr5_4:58953669-58953688 | Msa0860290:intron | 15.0% |
| !! | GAAGAAAAATTATGTTTAAA+TGG | - | chr5_4:58954236-58954255 | Msa0860290:CDS | 15.0% |
| !! | TTAATTGTGATATTAGGTTT+AGG | - | chr5_4:58950270-58950289 | Msa0860290:intron | 20.0% |
| !! | AAAAAAGAATATACTTAGAG+TGG | - | chr5_4:58950393-58950412 | Msa0860290:CDS | 20.0% |
| !!! | GCTTTTATATAGAATTCATA+AGG | + | chr5_4:58950681-58950700 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTATAAGCCATCT+TGG | + | chr5_4:58951189-58951208 | None:intergenic | 20.0% |
| !!! | AAAGCTTTTTTATTTGATGT+AGG | - | chr5_4:58951439-58951458 | Msa0860290:intron | 20.0% |
| !! | ATAAGATGTTTATACAAACA+GGG | + | chr5_4:58951465-58951484 | None:intergenic | 20.0% |
| !! | AATAAGATGTTTATACAAAC+AGG | + | chr5_4:58951466-58951485 | None:intergenic | 20.0% |
| !! | AATAAGTCTTTCTAAGTTAA+GGG | + | chr5_4:58951706-58951725 | None:intergenic | 20.0% |
| !!! | TTTTATTTGATGTAATTGAC+AGG | - | chr5_4:58951767-58951786 | Msa0860290:intron | 20.0% |
| !! | ATTTATTGAAAACTATTGCT+TGG | - | chr5_4:58952214-58952233 | Msa0860290:intron | 20.0% |
| !! | ATAACATAAAATACAAGATG+TGG | + | chr5_4:58952400-58952419 | None:intergenic | 20.0% |
| !!! | TGGAGAATTTATTTTTACAA+AGG | - | chr5_4:58952623-58952642 | Msa0860290:intron | 20.0% |
| !!! | TATTTTTACAAAGGTTTTGT+TGG | - | chr5_4:58952632-58952651 | Msa0860290:intron | 20.0% |
| !!! | ATTTTTACAAAGGTTTTGTT+GGG | - | chr5_4:58952633-58952652 | Msa0860290:intron | 20.0% |
| !!! | TAAATATTTGGTTCAAAAGA+GGG | + | chr5_4:58952925-58952944 | None:intergenic | 20.0% |
| !! | TTTGAATGGAAAACTAAATA+GGG | + | chr5_4:58954120-58954139 | None:intergenic | 20.0% |
| !! | ATTTGAATGGAAAACTAAAT+AGG | + | chr5_4:58954121-58954140 | None:intergenic | 20.0% |
| !!! | ATCTACTTTTATGAATTTCA+CGG | - | chr5_4:58954175-58954194 | Msa0860290:CDS | 20.0% |
| !! | GAAAAATTATGTTTAAATGG+AGG | - | chr5_4:58954239-58954258 | Msa0860290:CDS | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+AGG | - | chr5_4:58950721-58950740 | Msa0860290:intron | 25.0% |
| ! | CTCTTAGAAACTATTTGAAT+TGG | - | chr5_4:58950744-58950763 | Msa0860290:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | - | chr5_4:58951099-58951118 | Msa0860290:intron | 25.0% |
| !!! | TAAGCTCTTTTATTTGAAGT+AGG | - | chr5_4:58951268-58951287 | Msa0860290:intron | 25.0% |
| ! | GACATTTGTTTATTCAAACA+GGG | + | chr5_4:58951294-58951313 | None:intergenic | 25.0% |
| ! | AGACATTTGTTTATTCAAAC+AGG | + | chr5_4:58951295-58951314 | None:intergenic | 25.0% |
| ! | ATACAATACAAATATAGCCA+TGG | + | chr5_4:58951369-58951388 | None:intergenic | 25.0% |
| ! | ATTGTATCGTATACTTATTG+TGG | - | chr5_4:58951387-58951406 | Msa0860290:intron | 25.0% |
| ! | TTGTATCGTATACTTATTGT+GGG | - | chr5_4:58951388-58951407 | Msa0860290:intron | 25.0% |
| ! | AAAACAACTTATGAACATCA+TGG | - | chr5_4:58951602-58951621 | Msa0860290:intron | 25.0% |
| ! | AAACAACTTATGAACATCAT+GGG | - | chr5_4:58951603-58951622 | Msa0860290:intron | 25.0% |
| !! | AATATTTTGTGAGACTGTTT+GGG | + | chr5_4:58951646-58951665 | None:intergenic | 25.0% |
| !! | TAATATTTTGTGAGACTGTT+TGG | + | chr5_4:58951647-58951666 | None:intergenic | 25.0% |
| ! | CAATAAGTCTTTCTAAGTTA+AGG | + | chr5_4:58951707-58951726 | None:intergenic | 25.0% |
| ! | CTTAACTTAGAAAGACTTAT+TGG | - | chr5_4:58951705-58951724 | Msa0860290:intron | 25.0% |
| !! | AAGACTTATTGGTAACTTAT+TGG | - | chr5_4:58951716-58951735 | Msa0860290:intron | 25.0% |
| ! | ATAAAACTAAGTTCCAAGAT+GGG | + | chr5_4:58951753-58951772 | None:intergenic | 25.0% |
| ! | AATAAAACTAAGTTCCAAGA+TGG | + | chr5_4:58951754-58951773 | None:intergenic | 25.0% |
| !! | AAAACAAAAGGTACATTAAC+AGG | + | chr5_4:58951811-58951830 | None:intergenic | 25.0% |
| ! | TTATTCATGTCATCTTCTAA+TGG | - | chr5_4:58952262-58952281 | Msa0860290:intron | 25.0% |
| ! | TATTCATGTCATCTTCTAAT+GGG | - | chr5_4:58952263-58952282 | Msa0860290:intron | 25.0% |
| !! | GGAAAATTGTTATTGACAAA+TGG | - | chr5_4:58952673-58952692 | Msa0860290:intron | 25.0% |
| !! | AAATATTTGGTTCAAAAGAG+GGG | + | chr5_4:58952924-58952943 | None:intergenic | 25.0% |
| !! | GTAAATATTTGGTTCAAAAG+AGG | + | chr5_4:58952926-58952945 | None:intergenic | 25.0% |
| !!! | TAAGGGGAGAAATTTTAATT+AGG | + | chr5_4:58952948-58952967 | None:intergenic | 25.0% |
| !!! | CTTTTTGGCAATATATGTAT+AGG | - | chr5_4:58953684-58953703 | Msa0860290:intron | 25.0% |
| !! | TTTTTGGATAACAACTGAAT+TGG | + | chr5_4:58954076-58954095 | None:intergenic | 25.0% |
| ! | AGTTGTTATCCAAAAACAAT+AGG | - | chr5_4:58954080-58954099 | Msa0860290:CDS | 25.0% |
| ! | TTGAATGGAAAACTAAATAG+GGG | + | chr5_4:58954119-58954138 | None:intergenic | 25.0% |
| ! | CATAGTGATTTCAATTTGAA+TGG | + | chr5_4:58954134-58954153 | None:intergenic | 25.0% |
| ! | AAGTAGATCAATCAATGTTT+AGG | + | chr5_4:58954163-58954182 | None:intergenic | 25.0% |
| AAAGAAAAGAGCTTCTTGTT+TGG | + | chr5_4:58949813-58949832 | None:intergenic | 30.0% | |
| GTTGTCTAAGAAAGATGAAA+CGG | + | chr5_4:58949867-58949886 | None:intergenic | 30.0% | |
| TAAAATGTGTGTGATTGCTT+AGG | - | chr5_4:58950234-58950253 | Msa0860290:CDS | 30.0% | |
| AGAATATACTTAGAGTGGTT+TGG | - | chr5_4:58950398-58950417 | Msa0860290:CDS | 30.0% | |
| !! | ATAAGCTCTTTTGTTTGACT+TGG | - | chr5_4:58950519-58950538 | Msa0860290:intron | 30.0% |
| !! | TAAGCTCTTTTGTTTGACTT+GGG | - | chr5_4:58950520-58950539 | Msa0860290:intron | 30.0% |
| AAAAATAAGCCAATCCAAAC+AGG | + | chr5_4:58950546-58950565 | None:intergenic | 30.0% | |
| TAGAATTCATAAGGTTGTCA+AGG | + | chr5_4:58950672-58950691 | None:intergenic | 30.0% | |
| ! | GAATTGGCTTATTTGAGTTT+AGG | - | chr5_4:58950760-58950779 | Msa0860290:intron | 30.0% |
| TTAACCTGAAAATGAAAAGC+TGG | + | chr5_4:58950967-58950986 | None:intergenic | 30.0% | |
| ! | CACAAAACTTACGTTTGTTT+TGG | + | chr5_4:58951090-58951109 | None:intergenic | 30.0% |
| !! | GTAAGTTTTGTGAAACTGTT+TGG | - | chr5_4:58951098-58951117 | Msa0860290:intron | 30.0% |
| ! | GCTTTTGATAAACTAAGACA+TGG | + | chr5_4:58951424-58951443 | None:intergenic | 30.0% |
| TATTTGCAGATTATAGCACA+AGG | - | chr5_4:58951482-58951501 | Msa0860290:intron | 30.0% | |
| ! | GTAACTTATTGGTTAGTTAG+AGG | - | chr5_4:58951727-58951746 | Msa0860290:intron | 30.0% |
| !!! | TTTTGTTTTCATTGTTGCAG+CGG | - | chr5_4:58951822-58951841 | Msa0860290:intron | 30.0% |
| !! | TGTGGATGATATTTTTGATC+AGG | - | chr5_4:58951881-58951900 | Msa0860290:CDS | 30.0% |
| !! | TATTTTTGATCAGGCTAAAC+AGG | - | chr5_4:58951890-58951909 | Msa0860290:CDS | 30.0% |
| TAACAAGTTAAGTTACCTCA+AGG | + | chr5_4:58952115-58952134 | None:intergenic | 30.0% | |
| ATCCACAAGTTGCAAATAAT+GGG | + | chr5_4:58952241-58952260 | None:intergenic | 30.0% | |
| ! | ACTTTCTGTTTCTCTTGAAT+CGG | - | chr5_4:58952859-58952878 | Msa0860290:intron | 30.0% |
| AGGAATGTAATGTAATGTTG+AGG | - | chr5_4:58953100-58953119 | Msa0860290:intron | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | - | chr5_4:58953118-58953137 | Msa0860290:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | - | chr5_4:58953119-58953138 | Msa0860290:intron | 30.0% | |
| ! | AGTTTCTGTTTCTCTTGAAT+CGG | - | chr5_4:58953429-58953448 | Msa0860290:intron | 30.0% |
| ATCTGATGACAATAAACAAG+AGG | + | chr5_4:58953615-58953634 | None:intergenic | 30.0% | |
| TCCAAATCAGTAAGTTGTTT+GGG | + | chr5_4:58954027-58954046 | None:intergenic | 30.0% | |
| TGAATGGAAAACTAAATAGG+GGG | + | chr5_4:58954118-58954137 | None:intergenic | 30.0% | |
| !!! | GAGGTATTTTTTTGCGTAAA+TGG | - | chr5_4:58954258-58954277 | Msa0860290:CDS | 30.0% |
| !!! | GTATTTTTTTGCGTAAATGG+AGG | - | chr5_4:58954261-58954280 | Msa0860290:CDS | 30.0% |
| ACGTGAAGAAACAGAAAGAA+TGG | - | chr5_4:58949712-58949731 | Msa0860290:three_prime_UTR | 35.0% | |
| !! | GATGAATGAGTTGATTAGTG+CGG | + | chr5_4:58949774-58949793 | None:intergenic | 35.0% |
| ! | ATAGTTTCTAAGAGCCTGTT+TGG | + | chr5_4:58950738-58950757 | None:intergenic | 35.0% |
| ! | TGTGATAAGCTGTTTCCATA+AGG | + | chr5_4:58951128-58951147 | None:intergenic | 35.0% |
| ACAGCTTATCACATGTTCAT+TGG | - | chr5_4:58951135-58951154 | Msa0860290:intron | 35.0% | |
| ! | TTTTCGTAAGTTGTCCAAGA+TGG | - | chr5_4:58951172-58951191 | Msa0860290:intron | 35.0% |
| AGCTTATACATAAGCGATCT+AGG | - | chr5_4:58951238-58951257 | Msa0860290:intron | 35.0% | |
| ATCCATAACATGACACACAT+CGG | - | chr5_4:58951343-58951362 | Msa0860290:intron | 35.0% | |
| GCTGCAACAATGAAAACAAA+AGG | + | chr5_4:58951823-58951842 | None:intergenic | 35.0% | |
| ! | ACATGTGTAACTGATTCTAC+TGG | + | chr5_4:58952014-58952033 | None:intergenic | 35.0% |
| AGTAGAATCAGTTACACATG+TGG | - | chr5_4:58952013-58952032 | Msa0860290:CDS | 35.0% | |
| !! | AATGGGTTTTCTGTCAATGA+TGG | - | chr5_4:58952050-58952069 | Msa0860290:CDS | 35.0% |
| ! | TCAAGGAATTCTGCATTTTG+CGG | + | chr5_4:58952098-58952117 | None:intergenic | 35.0% |
| TGTTTCCATGAGTTAAGACT+TGG | - | chr5_4:58952142-58952161 | Msa0860290:intron | 35.0% | |
| CATCCACAAGTTGCAAATAA+TGG | + | chr5_4:58952242-58952261 | None:intergenic | 35.0% | |
| ! | TGTCATCTTCTAATGGGTAT+TGG | - | chr5_4:58952269-58952288 | Msa0860290:intron | 35.0% |
| ! | GTCATCTTCTAATGGGTATT+GGG | - | chr5_4:58952270-58952289 | Msa0860290:intron | 35.0% |
| !! | TTCTAATGGGTATTGGGTTT+GGG | - | chr5_4:58952276-58952295 | Msa0860290:intron | 35.0% |
| TTCTATGAAGAGCTTTGCTT+TGG | - | chr5_4:58952784-58952803 | Msa0860290:intron | 35.0% | |
| ! | AGCTTTGCTTTGGATTTACA+AGG | - | chr5_4:58952794-58952813 | Msa0860290:intron | 35.0% |
| ! | GCTTTGCTTTGGATTTACAA+GGG | - | chr5_4:58952795-58952814 | Msa0860290:intron | 35.0% |
| ! | CTTTCTGTTTCTCTTGAATC+GGG | - | chr5_4:58952860-58952879 | Msa0860290:intron | 35.0% |
| TGAGGGAATGTAATGTTATG+AGG | - | chr5_4:58953038-58953057 | Msa0860290:intron | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr5_4:58953039-58953058 | Msa0860290:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr5_4:58953057-58953076 | Msa0860290:intron | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr5_4:58953074-58953093 | Msa0860290:intron | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | - | chr5_4:58953080-58953099 | Msa0860290:intron | 35.0% | |
| TACATTCCTCATCCAAACAA+TGG | + | chr5_4:58953089-58953108 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr5_4:58953057-58953076 | Msa0860290:intron | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr5_4:58953197-58953216 | None:intergenic | 35.0% | |
| TTCTATGAAGAGCTTTGCTT+TGG | - | chr5_4:58952784-58952803 | Msa0860290:intron | 35.0% | |
| TCTATGAAGAGCTTTGCTTT+GGG | - | chr5_4:58952785-58952804 | Msa0860290:intron | 35.0% | |
| ! | GTTTCTGTTTCTCTTGAATC+GGG | - | chr5_4:58953430-58953449 | Msa0860290:intron | 35.0% |
| ! | ACAATAAACAAGAGGCATAC+CGG | + | chr5_4:58953607-58953626 | None:intergenic | 35.0% |
| AAATTACCAACTGCAGACAA+TGG | - | chr5_4:58953993-58954012 | Msa0860290:CDS | 35.0% | |
| AATTACCAACTGCAGACAAT+GGG | - | chr5_4:58953994-58954013 | Msa0860290:CDS | 35.0% | |
| AAATCAGTAAGTTGTTTGGG+AGG | + | chr5_4:58954024-58954043 | None:intergenic | 35.0% | |
| ! | TCCCAAACAACTTACTGATT+TGG | - | chr5_4:58954023-58954042 | Msa0860290:CDS | 35.0% |
| GTCCAAATCAGTAAGTTGTT+TGG | + | chr5_4:58954028-58954047 | None:intergenic | 35.0% | |
| GAATTTCACGGAATACTCAT+TGG | - | chr5_4:58954187-58954206 | Msa0860290:CDS | 35.0% | |
| TTCACGAAAGCAATTCTGTA+TGG | + | chr5_4:58954219-58954238 | None:intergenic | 35.0% | |
| AAGAGAATCGGAAGGTGAAA+CGG | + | chr5_4:58949939-58949958 | None:intergenic | 40.0% | |
| AAACTCAGGGGAAAGAGAAT+CGG | + | chr5_4:58949951-58949970 | None:intergenic | 40.0% | |
| AATCATCGGGATGAAACTCA+GGG | + | chr5_4:58949964-58949983 | None:intergenic | 40.0% | |
| AGGTCGATTGGTAAGAAAAG+CGG | - | chr5_4:58950046-58950065 | Msa0860290:CDS | 40.0% | |
| CGGTTCATCAGAATCAGAAT+CGG | + | chr5_4:58950131-58950150 | None:intergenic | 40.0% | |
| ! | GGAACCAGCTTTTCATTTTC+AGG | - | chr5_4:58950960-58950979 | Msa0860290:intron | 40.0% |
| AAATCAGCTTGTATCACTGG+TGG | + | chr5_4:58951320-58951339 | None:intergenic | 40.0% | |
| CTGAAAACTCTTCAAGGTCT+AGG | - | chr5_4:58951931-58951950 | Msa0860290:CDS | 40.0% | |
| ! | TCAAGGTCTAGGAGTTTTAC+TGG | - | chr5_4:58951942-58951961 | Msa0860290:CDS | 40.0% |
| ! | TGTAACTGATTCTACTGGCT+GGG | + | chr5_4:58952009-58952028 | None:intergenic | 40.0% |
| ! | TTACACATGTGGTCACCTTT+TGG | - | chr5_4:58952024-58952043 | Msa0860290:CDS | 40.0% |
| AGAAAACCCATTCCTCCAAA+AGG | + | chr5_4:58952042-58952061 | None:intergenic | 40.0% | |
| CTGTCAATGATGGTCCTTTA+CGG | - | chr5_4:58952060-58952079 | Msa0860290:CDS | 40.0% | |
| GCAAAATGCAGAATTCCTTG+AGG | - | chr5_4:58952097-58952116 | Msa0860290:CDS | 40.0% | |
| TTCCATGAGTTAAGACTTGG+TGG | - | chr5_4:58952145-58952164 | Msa0860290:intron | 40.0% | |
| AACCACCAAGTCTTAACTCA+TGG | + | chr5_4:58952150-58952169 | None:intergenic | 40.0% | |
| GTCCCATTATTTGCAACTTG+TGG | - | chr5_4:58952236-58952255 | Msa0860290:intron | 40.0% | |
| !! | CTTCTAATGGGTATTGGGTT+TGG | - | chr5_4:58952275-58952294 | Msa0860290:intron | 40.0% |
| ! | CTCTATTCAGACTAGTTGCT+GGG | + | chr5_4:58952306-58952325 | None:intergenic | 40.0% |
| ! | TCTCTATTCAGACTAGTTGC+TGG | + | chr5_4:58952307-58952326 | None:intergenic | 40.0% |
| TACAGCATAGCAAGGAGTTA+AGG | + | chr5_4:58952456-58952475 | None:intergenic | 40.0% | |
| AAACGCAATACAGCATAGCA+AGG | + | chr5_4:58952464-58952483 | None:intergenic | 40.0% | |
| ! | TGGGTTAGATGCATCAAGAT+CGG | - | chr5_4:58952652-58952671 | Msa0860290:intron | 40.0% |
| CAAATGGTTTGATCTGTCGA+AGG | - | chr5_4:58952689-58952708 | Msa0860290:intron | 40.0% | |
| ! | ATTTGGTTCAAAAGAGGGGA+GGG | + | chr5_4:58952920-58952939 | None:intergenic | 40.0% |
| ! | TATTTGGTTCAAAAGAGGGG+AGG | + | chr5_4:58952921-58952940 | None:intergenic | 40.0% |
| CTCTGTATAGTTCAACGGAT+GGG | + | chr5_4:58952985-58953004 | None:intergenic | 40.0% | |
| TCTCTGTATAGTTCAACGGA+TGG | + | chr5_4:58952986-58953005 | None:intergenic | 40.0% | |
| AGGGTCTCTGTATAGTTCAA+CGG | + | chr5_4:58952990-58953009 | None:intergenic | 40.0% | |
| TTACCTCATCCAAACACACT+CGG | - | chr5_4:58953199-58953218 | Msa0860290:intron | 40.0% | |
| !!! | CTTTGTTTGGGAGTTTTGAG+TGG | - | chr5_4:58953223-58953242 | Msa0860290:intron | 40.0% |
| TTTGGGAGGTGAGGAATATA+GGG | - | chr5_4:58953261-58953280 | Msa0860290:intron | 40.0% | |
| ! | AGCTTTGCTTTGGGTTTACA+AGG | - | chr5_4:58953364-58953383 | Msa0860290:intron | 40.0% |
| ! | GCTTTGCTTTGGGTTTACAA+GGG | - | chr5_4:58953365-58953384 | Msa0860290:intron | 40.0% |
| CTTCTTTATGCTCTGCATTG+AGG | + | chr5_4:58953503-58953522 | None:intergenic | 40.0% | |
| ! | TCAGTTGGTTCAAGCTCTTT+GGG | + | chr5_4:58953535-58953554 | None:intergenic | 40.0% |
| ! | ATCAGTTGGTTCAAGCTCTT+TGG | + | chr5_4:58953536-58953555 | None:intergenic | 40.0% |
| ! | CAATAAACAAGAGGCATACC+GGG | + | chr5_4:58953606-58953625 | None:intergenic | 40.0% |
| TTAGGTGACAGCAGTTCAAA+TGG | - | chr5_4:58953754-58953773 | Msa0860290:intron | 40.0% | |
| TCTACAACTAAACCCATTGC+TGG | + | chr5_4:58953841-58953860 | None:intergenic | 40.0% | |
| AGATAACCTTAGCTGGATTG+AGG | + | chr5_4:58953881-58953900 | None:intergenic | 40.0% | |
| ATCCAGCTAAGGTTATCTGA+TGG | - | chr5_4:58953883-58953902 | Msa0860290:CDS | 40.0% | |
| TACCATCAGATAACCTTAGC+TGG | + | chr5_4:58953888-58953907 | None:intergenic | 40.0% | |
| GTTATCTGATGGTACACGAA+TGG | - | chr5_4:58953894-58953913 | Msa0860290:CDS | 40.0% | |
| TTCATTGATGCATCAAGACC+TGG | - | chr5_4:58953961-58953980 | Msa0860290:CDS | 40.0% | |
| AAAACTAAATAGGGGGAGAG+GGG | + | chr5_4:58954111-58954130 | None:intergenic | 40.0% | |
| GAAAACTAAATAGGGGGAGA+GGG | + | chr5_4:58954112-58954131 | None:intergenic | 40.0% | |
| GAATCGCTTGATGAGGGTTT+CGG | + | chr5_4:58949749-58949768 | None:intergenic | 45.0% | |
| !! | GAATGAGTTGATTAGTGCGG+TGG | + | chr5_4:58949771-58949790 | None:intergenic | 45.0% |
| !!! | GTCGTTTTGAGGAAGAGTAG+CGG | + | chr5_4:58949915-58949934 | None:intergenic | 45.0% |
| ATCATCGGGATGAAACTCAG+GGG | + | chr5_4:58949963-58949982 | None:intergenic | 45.0% | |
| GAATCATCGGGATGAAACTC+AGG | + | chr5_4:58949965-58949984 | None:intergenic | 45.0% | |
| TTGCGAAGGAGGAGAATCAT+CGG | + | chr5_4:58949978-58949997 | None:intergenic | 45.0% | |
| CTTCGAGATCGAAGCTCATA+CGG | + | chr5_4:58950028-58950047 | None:intergenic | 45.0% | |
| ATTGGTAAGAAAAGCGGCTC+TGG | - | chr5_4:58950052-58950071 | Msa0860290:CDS | 45.0% | |
| GTAGTAGGCAAAGTGGGATT+CGG | - | chr5_4:58950074-58950093 | Msa0860290:CDS | 45.0% | |
| TTCTGATTCTGATGAACCGC+AGG | - | chr5_4:58950132-58950151 | Msa0860290:CDS | 45.0% | |
| ATTATGCTGGTGGTCAGAAG+AGG | - | chr5_4:58950158-58950177 | Msa0860290:CDS | 45.0% | |
| !! | TTGTTTGACTTGGGCCTGTT+TGG | - | chr5_4:58950529-58950548 | Msa0860290:intron | 45.0% |
| ! | AAACTGTTTGGGACGCCTTA+TGG | - | chr5_4:58951110-58951129 | Msa0860290:intron | 45.0% |
| CGCAAATCAGCTTGTATCAC+TGG | + | chr5_4:58951323-58951342 | None:intergenic | 45.0% | |
| ! | CTTGAAGAGTTTTCAGCAGG+AGG | + | chr5_4:58951927-58951946 | None:intergenic | 45.0% |
| CTCCTGCTGAAAACTCTTCA+AGG | - | chr5_4:58951925-58951944 | Msa0860290:CDS | 45.0% | |
| ! | GACCTTGAAGAGTTTTCAGC+AGG | + | chr5_4:58951930-58951949 | None:intergenic | 45.0% |
| ! | GTAACTGATTCTACTGGCTG+GGG | + | chr5_4:58952008-58952027 | None:intergenic | 45.0% |
| ! | GTGTAACTGATTCTACTGGC+TGG | + | chr5_4:58952010-58952029 | None:intergenic | 45.0% |
| !! | TGGTCACCTTTTGGAGGAAT+GGG | - | chr5_4:58952033-58952052 | Msa0860290:CDS | 45.0% |
| TCAATGATGGTCCTTTACGG+AGG | - | chr5_4:58952063-58952082 | Msa0860290:CDS | 45.0% | |
| TATAGTTCAACGGATGGGAG+GGG | + | chr5_4:58952980-58952999 | None:intergenic | 45.0% | |
| GTATAGTTCAACGGATGGGA+GGG | + | chr5_4:58952981-58953000 | None:intergenic | 45.0% | |
| TGTATAGTTCAACGGATGGG+AGG | + | chr5_4:58952982-58953001 | None:intergenic | 45.0% | |
| AGAGACCCTTAGAGTGTGTT+TGG | - | chr5_4:58953001-58953020 | Msa0860290:intron | 45.0% | |
| ACCCTTAGAGTGTGTTTGGA+TGG | - | chr5_4:58953005-58953024 | Msa0860290:intron | 45.0% | |
| CCCATCCAAACACACTCTAA+GGG | + | chr5_4:58953009-58953028 | None:intergenic | 45.0% | |
| CCCTTAGAGTGTGTTTGGAT+GGG | - | chr5_4:58953006-58953025 | Msa0860290:intron | 45.0% | |
| CCTTAGAGTGTGTTTGGATG+GGG | - | chr5_4:58953007-58953026 | Msa0860290:intron | 45.0% | |
| CTTAGAGTGTGTTTGGATGG+GGG | - | chr5_4:58953008-58953027 | Msa0860290:intron | 45.0% | |
| ! | TTGGATGGGGGAATGTTTTG+AGG | - | chr5_4:58953020-58953039 | Msa0860290:intron | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | - | chr5_4:58953021-58953040 | Msa0860290:intron | 45.0% |
| TACCTCATCCAAACACACTC+GGG | - | chr5_4:58953200-58953219 | Msa0860290:intron | 45.0% | |
| AAACAAAGCCCGAGTGTGTT+TGG | + | chr5_4:58953211-58953230 | None:intergenic | 45.0% | |
| !! | AAACACACTCGGGCTTTGTT+TGG | - | chr5_4:58953210-58953229 | Msa0860290:intron | 45.0% |
| !! | AACACACTCGGGCTTTGTTT+GGG | - | chr5_4:58953211-58953230 | Msa0860290:intron | 45.0% |
| !!! | TGTTTGGGAGTTTTGAGTGG+AGG | - | chr5_4:58953226-58953245 | Msa0860290:intron | 45.0% |
| !!! | GTTTGGGAGTTTTGAGTGGA+GGG | - | chr5_4:58953227-58953246 | Msa0860290:intron | 45.0% |
| !!! | TTTGGGAGTTTTGAGTGGAG+GGG | - | chr5_4:58953228-58953247 | Msa0860290:intron | 45.0% |
| ! | CTTTGGGAGGTGAGGAATAT+AGG | - | chr5_4:58953260-58953279 | Msa0860290:intron | 45.0% |
| TTGGGAGGTGAGGAATATAG+GGG | - | chr5_4:58953262-58953281 | Msa0860290:intron | 45.0% | |
| CTAAAGTTCTTCCAACCCCA+CGG | + | chr5_4:58953738-58953757 | None:intergenic | 45.0% | |
| TCAAATGGTGAAGCTGCTAG+TGG | - | chr5_4:58953769-58953788 | Msa0860290:intron | 45.0% | |
| TCAATCACCACCATGCAATC+AGG | - | chr5_4:58953926-58953945 | Msa0860290:CDS | 45.0% | |
| CAATCACCACCATGCAATCA+GGG | - | chr5_4:58953927-58953946 | Msa0860290:CDS | 45.0% | |
| GAATATCCCTGATTGCATGG+TGG | + | chr5_4:58953936-58953955 | None:intergenic | 45.0% | |
| CTCGAATATCCCTGATTGCA+TGG | + | chr5_4:58953939-58953958 | None:intergenic | 45.0% | |
| ATTGATGCATCAAGACCTGG+TGG | - | chr5_4:58953964-58953983 | Msa0860290:CDS | 45.0% | |
| TTGATGCATCAAGACCTGGT+GGG | - | chr5_4:58953965-58953984 | Msa0860290:CDS | 45.0% | |
| GAAAACCCATTGTCTGCAGT+TGG | + | chr5_4:58954002-58954021 | None:intergenic | 45.0% | |
| ! | TACCAGCTTGCTCTATAGTC+TGG | + | chr5_4:58954050-58954069 | None:intergenic | 45.0% |
| AAACTAAATAGGGGGAGAGG+GGG | + | chr5_4:58954110-58954129 | None:intergenic | 45.0% | |
| GGAAAACTAAATAGGGGGAG+AGG | + | chr5_4:58954113-58954132 | None:intergenic | 45.0% | |
| !!! | TAAATTATTTTATATATTTG+TGG | - | chr5_4:58952603-58952622 | Msa0860290:intron | 5.0% |
| !! | GGTGTCGTTTAGAGGGATAG+TGG | + | chr5_4:58949894-58949913 | None:intergenic | 50.0% |
| !! | GAGTAGCGGTGTCGTTTAGA+GGG | + | chr5_4:58949901-58949920 | None:intergenic | 50.0% |
| !! | AGAGTAGCGGTGTCGTTTAG+AGG | + | chr5_4:58949902-58949921 | None:intergenic | 50.0% |
| !!! | GGTGAAACGGTGTCGTTTTG+AGG | + | chr5_4:58949926-58949945 | None:intergenic | 50.0% |
| TCAGGGGAAAGAGAATCGGA+AGG | + | chr5_4:58949947-58949966 | None:intergenic | 50.0% | |
| TGCGAAGGAGGAGAATCATC+GGG | + | chr5_4:58949977-58949996 | None:intergenic | 50.0% | |
| CGTATGAGCTTCGATCTCGA+AGG | - | chr5_4:58950026-58950045 | Msa0860290:CDS | 50.0% | |
| CTTCGATCTCGAAGGTCGAT+TGG | - | chr5_4:58950034-58950053 | Msa0860290:CDS | 50.0% | |
| ! | AGAAAAGCGGCTCTGGTAGT+AGG | - | chr5_4:58950059-58950078 | Msa0860290:CDS | 50.0% |
| GCTCTGGTAGTAGGCAAAGT+GGG | - | chr5_4:58950068-58950087 | Msa0860290:CDS | 50.0% | |
| !! | GAACCGCAGGAGTATTATGC+TGG | - | chr5_4:58950145-58950164 | Msa0860290:CDS | 50.0% |
| CCACCAGCATAATACTCCTG+CGG | + | chr5_4:58950151-58950170 | None:intergenic | 50.0% | |
| ! | TGACTTGGGCCTGTTTGGAT+TGG | - | chr5_4:58950534-58950553 | Msa0860290:intron | 50.0% |
| GGCCGATGTGTGTCATGTTA+TGG | + | chr5_4:58951348-58951367 | None:intergenic | 50.0% | |
| AACATGACACACATCGGCCA+TGG | - | chr5_4:58951349-58951368 | Msa0860290:intron | 50.0% | |
| ! | GGTTAGTTAGAGGCCCATCT+TGG | - | chr5_4:58951737-58951756 | Msa0860290:intron | 50.0% |
| TGCTTGTCCAAGATCCTACC+AGG | - | chr5_4:58951847-58951866 | Msa0860290:intron | 50.0% | |
| GCTTGTCCAAGATCCTACCA+GGG | - | chr5_4:58951848-58951867 | Msa0860290:CDS | 50.0% | |
| CTTGTCCAAGATCCTACCAG+GGG | - | chr5_4:58951849-58951868 | Msa0860290:CDS | 50.0% | |
| ACAGAATTACCACCCCTGGT+AGG | + | chr5_4:58951864-58951883 | None:intergenic | 50.0% | |
| TACCAGGGGTGGTAATTCTG+TGG | - | chr5_4:58951863-58951882 | Msa0860290:CDS | 50.0% | |
| ATCCACAGAATTACCACCCC+TGG | + | chr5_4:58951868-58951887 | None:intergenic | 50.0% | |
| ! | CACATGTGGTCACCTTTTGG+AGG | - | chr5_4:58952027-58952046 | Msa0860290:CDS | 50.0% |
| !! | GTGGTCACCTTTTGGAGGAA+TGG | - | chr5_4:58952032-58952051 | Msa0860290:CDS | 50.0% |
| TGATGGTCCTTTACGGAGGT+CGG | - | chr5_4:58952067-58952086 | Msa0860290:CDS | 50.0% | |
| TGACACGTGAGTTGCGCTAT+AGG | + | chr5_4:58952715-58952734 | None:intergenic | 50.0% | |
| GTTCAAAAGAGGGGAGGGTA+GGG | + | chr5_4:58952915-58952934 | None:intergenic | 50.0% | |
| !! | GGAGGGGAGGGATTTTTAAG+GGG | + | chr5_4:58952964-58952983 | None:intergenic | 50.0% |
| ! | GGGAGGGGAGGGATTTTTAA+GGG | + | chr5_4:58952965-58952984 | None:intergenic | 50.0% |
| ! | TGGGAGGGGAGGGATTTTTA+AGG | + | chr5_4:58952966-58952985 | None:intergenic | 50.0% |
| CCCCATCCAAACACACTCTA+AGG | + | chr5_4:58953010-58953029 | None:intergenic | 50.0% | |
| !!! | GAGTTTTGAGTGGAGGGGAA+GGG | - | chr5_4:58953233-58953252 | Msa0860290:intron | 50.0% |
| ACAGAAGTTCGGCGATCAGT+TGG | + | chr5_4:58953550-58953569 | None:intergenic | 50.0% | |
| GGTTGAGACGGACAGAAGTT+CGG | + | chr5_4:58953561-58953580 | None:intergenic | 50.0% | |
| ! | AGTTTTCATCCCGCCTTGTG+AGG | + | chr5_4:58953582-58953601 | None:intergenic | 50.0% |
| AAGGCGGGATGAAAACTACC+CGG | - | chr5_4:58953585-58953604 | Msa0860290:intron | 50.0% | |
| AGCAGTATTGCGTGGCTTCA+CGG | + | chr5_4:58953713-58953732 | None:intergenic | 50.0% | |
| CACGCAATACTGCTTTCCGT+GGG | - | chr5_4:58953719-58953738 | Msa0860290:intron | 50.0% | |
| ACGCAATACTGCTTTCCGTG+GGG | - | chr5_4:58953720-58953739 | Msa0860290:intron | 50.0% | |
| AATACTGCTTTCCGTGGGGT+TGG | - | chr5_4:58953724-58953743 | Msa0860290:intron | 50.0% | |
| CGTGGGGTTGGAAGAACTTT+AGG | - | chr5_4:58953736-58953755 | Msa0860290:intron | 50.0% | |
| GGACCTAGTCAAACTACTGC+CGG | - | chr5_4:58953790-58953809 | Msa0860290:CDS | 50.0% | |
| CTTAGCTGGATTGAGGTCAC+TGG | + | chr5_4:58953874-58953893 | None:intergenic | 50.0% | |
| CAGTGACCTCAATCCAGCTA+AGG | - | chr5_4:58953872-58953891 | Msa0860290:CDS | 50.0% | |
| TGATGCATCAAGACCTGGTG+GGG | - | chr5_4:58953966-58953985 | Msa0860290:CDS | 50.0% | |
| TGGTAATTTCTTGCCCCACC+AGG | + | chr5_4:58953982-58954001 | None:intergenic | 50.0% | |
| GACCAGACTATAGAGCAAGC+TGG | - | chr5_4:58954045-58954064 | Msa0860290:CDS | 50.0% | |
| ! | GGGGGGGAACCTATTGTTTT+TGG | + | chr5_4:58954092-58954111 | None:intergenic | 50.0% |
| AACTAAATAGGGGGAGAGGG+GGG | + | chr5_4:58954109-58954128 | None:intergenic | 50.0% | |
| GCGGTGGAATCGCTTGATGA+GGG | + | chr5_4:58949755-58949774 | None:intergenic | 55.0% | |
| TGCGGTGGAATCGCTTGATG+AGG | + | chr5_4:58949756-58949775 | None:intergenic | 55.0% | |
| TGTGACGGTGATTGCGAAGG+AGG | + | chr5_4:58949989-58950008 | None:intergenic | 55.0% | |
| GACTGTGACGGTGATTGCGA+AGG | + | chr5_4:58949992-58950011 | None:intergenic | 55.0% | |
| AGCTCATACGGAGCACGTGA+CGG | + | chr5_4:58950016-58950035 | None:intergenic | 55.0% | |
| ! | GGCTCTGGTAGTAGGCAAAG+TGG | - | chr5_4:58950067-58950086 | Msa0860290:CDS | 55.0% |
| !! | CCGCAGGAGTATTATGCTGG+TGG | - | chr5_4:58950148-58950167 | Msa0860290:CDS | 55.0% |
| TACCACCCCTGGTAGGATCT+TGG | + | chr5_4:58951857-58951876 | None:intergenic | 55.0% | |
| GGAACCGCCAGATTGCTTTC+CGG | - | chr5_4:58951963-58951982 | Msa0860290:CDS | 55.0% | |
| GGATCTTCCGACCTCCGTAA+AGG | + | chr5_4:58952077-58952096 | None:intergenic | 55.0% | |
| GGTTCAAAAGAGGGGAGGGT+AGG | + | chr5_4:58952916-58952935 | None:intergenic | 55.0% | |
| AGCCCGAGTGTGTTTGGATG+AGG | + | chr5_4:58953205-58953224 | None:intergenic | 55.0% | |
| !!! | GGAGTTTTGAGTGGAGGGGA+AGG | - | chr5_4:58953232-58953251 | Msa0860290:intron | 55.0% |
| TTTGAGTGGAGGGGAAGGGA+AGG | - | chr5_4:58953237-58953256 | Msa0860290:intron | 55.0% | |
| CTGTCCGTCTCAACCTCACA+AGG | - | chr5_4:58953566-58953585 | Msa0860290:intron | 55.0% | |
| TCCGTCTCAACCTCACAAGG+CGG | - | chr5_4:58953569-58953588 | Msa0860290:intron | 55.0% | |
| GCAGTATTGCGTGGCTTCAC+GGG | + | chr5_4:58953712-58953731 | None:intergenic | 55.0% | |
| CCACGGAAAGCAGTATTGCG+TGG | + | chr5_4:58953721-58953740 | None:intergenic | 55.0% | |
| CCACGCAATACTGCTTTCCG+TGG | - | chr5_4:58953718-58953737 | Msa0860290:intron | 55.0% | |
| ! | GCACCGGCAGTAGTTTGACT+AGG | + | chr5_4:58953796-58953815 | None:intergenic | 55.0% |
| ! | AGCAGTAAGTGGGGAAGCAC+CGG | + | chr5_4:58953812-58953831 | None:intergenic | 55.0% |
| ACTAAACCCATTGCTGGCGC+TGG | + | chr5_4:58953835-58953854 | None:intergenic | 55.0% | |
| ACTAAATAGGGGGAGAGGGG+GGG | + | chr5_4:58954108-58954127 | None:intergenic | 55.0% | |
| GTCCAAGATCCTACCAGGGG+TGG | - | chr5_4:58951852-58951871 | Msa0860290:CDS | 60.0% | |
| CTCGCCGGAAAGCAATCTGG+CGG | + | chr5_4:58951970-58951989 | None:intergenic | 60.0% | |
| TGCCTCGCCGGAAAGCAATC+TGG | + | chr5_4:58951973-58951992 | None:intergenic | 60.0% | |
| ! | TCTACTGGCTGGGGAGCAGA+TGG | + | chr5_4:58951999-58952018 | None:intergenic | 60.0% |
| GTTCAACGGATGGGAGGGGA+GGG | + | chr5_4:58952976-58952995 | None:intergenic | 60.0% | |
| AGTTCAACGGATGGGAGGGG+AGG | + | chr5_4:58952977-58952996 | None:intergenic | 60.0% | |
| TGGAGGGGAAGGGAAGGCTT+TGG | - | chr5_4:58953243-58953262 | Msa0860290:intron | 60.0% | |
| GGAGGGGAAGGGAAGGCTTT+GGG | - | chr5_4:58953244-58953263 | Msa0860290:intron | 60.0% | |
| !! | AGGGAAGGCTTTGGGAGGTG+AGG | - | chr5_4:58953252-58953271 | Msa0860290:intron | 60.0% |
| CCCGCCTTGTGAGGTTGAGA+CGG | + | chr5_4:58953573-58953592 | None:intergenic | 60.0% | |
| CCGTCTCAACCTCACAAGGC+GGG | - | chr5_4:58953570-58953589 | Msa0860290:intron | 60.0% | |
| ! | TGGCGCTGGAGCAGTAAGTG+GGG | + | chr5_4:58953821-58953840 | None:intergenic | 60.0% |
| ! | CTGGCGCTGGAGCAGTAAGT+GGG | + | chr5_4:58953822-58953841 | None:intergenic | 60.0% |
| TACTGCTCCAGCGCCAGCAA+TGG | - | chr5_4:58953825-58953844 | Msa0860290:CDS | 60.0% | |
| ACTGCTCCAGCGCCAGCAAT+GGG | - | chr5_4:58953826-58953845 | Msa0860290:CDS | 60.0% | |
| GCACGTGACGGCGACTGTGA+CGG | + | chr5_4:58950004-58950023 | None:intergenic | 65.0% | |
| CGCCAGATTGCTTTCCGGCG+AGG | - | chr5_4:58951968-58951987 | Msa0860290:CDS | 65.0% | |
| AGCAGATGGCACTGCCTCGC+CGG | + | chr5_4:58951985-58952004 | None:intergenic | 65.0% | |
| !! | GGGGAAGGGAAGGCTTTGGG+AGG | - | chr5_4:58953247-58953266 | Msa0860290:intron | 65.0% |
| ! | GCTGGCGCTGGAGCAGTAAG+TGG | + | chr5_4:58953823-58953842 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 58949671 | 58954295 | 58949671 | ID=Msa0860290;Name=Msa0860290 |
| chr5_4 | mRNA | 58949671 | 58954295 | 58949671 | ID=Msa0860290-mRNA-1;Parent=Msa0860290;Name=Msa0860290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=15|1|1|1|1|1|4|194|420 |
| chr5_4 | exon | 58949671 | 58950260 | 58949671 | ID=Msa0860290-mRNA-1:exon:18032;Parent=Msa0860290-mRNA-1 |
| chr5_4 | exon | 58950360 | 58950455 | 58950360 | ID=Msa0860290-mRNA-1:exon:18031;Parent=Msa0860290-mRNA-1 |
| chr5_4 | exon | 58951848 | 58952124 | 58951848 | ID=Msa0860290-mRNA-1:exon:18030;Parent=Msa0860290-mRNA-1 |
| chr5_4 | exon | 58953787 | 58954295 | 58953787 | ID=Msa0860290-mRNA-1:exon:18029;Parent=Msa0860290-mRNA-1 |
| chr5_4 | five_prime_UTR | 58954281 | 58954295 | 58954281 | ID=Msa0860290-mRNA-1:five_prime_utr;Parent=Msa0860290-mRNA-1 |
| chr5_4 | CDS | 58953787 | 58954280 | 58953787 | ID=Msa0860290-mRNA-1:cds;Parent=Msa0860290-mRNA-1 |
| chr5_4 | CDS | 58951848 | 58952124 | 58951848 | ID=Msa0860290-mRNA-1:cds;Parent=Msa0860290-mRNA-1 |
| chr5_4 | CDS | 58950360 | 58950455 | 58950360 | ID=Msa0860290-mRNA-1:cds;Parent=Msa0860290-mRNA-1 |
| chr5_4 | CDS | 58949865 | 58950260 | 58949865 | ID=Msa0860290-mRNA-1:cds;Parent=Msa0860290-mRNA-1 |
| chr5_4 | three_prime_UTR | 58949671 | 58949864 | 58949671 | ID=Msa0860290-mRNA-1:three_prime_utr;Parent=Msa0860290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
